Query 041849
Match_columns 293
No_of_seqs 170 out of 1522
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 5.3E-54 1.1E-58 385.9 20.7 179 75-253 79-257 (275)
2 COG0740 ClpP Protease subunit 100.0 1.1E-51 2.3E-56 363.7 21.4 192 67-258 5-197 (200)
3 PRK14514 ATP-dependent Clp pro 100.0 5.6E-49 1.2E-53 353.4 21.7 177 78-254 44-220 (221)
4 PRK14513 ATP-dependent Clp pro 100.0 2.1E-48 4.6E-53 345.5 23.0 179 77-255 16-194 (201)
5 PRK12552 ATP-dependent Clp pro 100.0 1.5E-48 3.3E-53 350.2 21.8 178 78-255 20-216 (222)
6 CHL00028 clpP ATP-dependent Cl 100.0 6.6E-48 1.4E-52 342.5 22.2 178 77-254 19-197 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 7.8E-48 1.7E-52 341.0 22.1 177 78-254 15-191 (196)
8 PRK14512 ATP-dependent Clp pro 100.0 8.7E-45 1.9E-49 322.0 21.4 182 74-255 9-190 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 1.1E-44 2.4E-49 319.9 21.8 176 77-252 15-190 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 4.4E-43 9.4E-48 311.8 22.0 180 76-255 19-198 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 1E-42 2.3E-47 310.9 21.5 181 77-257 24-206 (207)
12 PF00574 CLP_protease: Clp pro 100.0 3.8E-43 8.3E-48 306.4 15.9 176 78-253 6-181 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 3.1E-42 6.8E-47 299.0 19.1 171 80-250 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 1.4E-41 2.9E-46 292.9 20.5 162 89-250 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 3.3E-32 7.2E-37 232.8 18.5 156 90-250 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 6E-31 1.3E-35 228.8 17.5 157 90-255 3-167 (172)
17 cd00394 Clp_protease_like Case 100.0 5.2E-30 1.1E-34 218.7 18.1 159 90-250 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 5.8E-27 1.3E-31 206.0 19.1 161 90-254 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 1.4E-25 3.1E-30 196.2 17.2 158 90-255 3-173 (178)
20 COG0616 SppA Periplasmic serin 99.9 3.1E-22 6.7E-27 189.5 13.9 168 90-260 63-269 (317)
21 TIGR00706 SppA_dom signal pept 99.9 3.2E-21 7E-26 172.0 15.6 165 90-258 4-200 (207)
22 TIGR00705 SppA_67K signal pept 99.9 3.1E-21 6.7E-26 195.8 14.6 169 90-261 312-519 (584)
23 cd07023 S49_Sppa_N_C Signal pe 99.9 1.4E-20 3.1E-25 167.6 14.9 166 90-258 4-205 (208)
24 cd07014 S49_SppA Signal peptid 99.8 3.5E-20 7.5E-25 161.2 15.3 147 101-256 23-172 (177)
25 cd07022 S49_Sppa_36K_type Sign 99.8 4.3E-20 9.3E-25 165.5 15.6 164 90-257 4-210 (214)
26 PRK10949 protease 4; Provision 99.8 1.2E-20 2.7E-25 192.1 13.6 173 89-264 329-540 (618)
27 cd07019 S49_SppA_1 Signal pept 99.8 3.9E-19 8.4E-24 159.1 14.2 166 90-258 4-208 (211)
28 PRK11778 putative inner membra 99.8 4.3E-18 9.4E-23 161.4 15.3 164 90-259 94-292 (330)
29 cd07018 S49_SppA_67K_type Sign 99.8 6.8E-18 1.5E-22 152.1 13.4 160 95-258 24-218 (222)
30 COG1030 NfeD Membrane-bound se 99.7 2.9E-17 6.4E-22 159.1 14.7 159 89-255 29-190 (436)
31 PF01972 SDH_sah: Serine dehyd 99.6 6E-15 1.3E-19 135.7 15.9 147 93-246 68-241 (285)
32 TIGR00705 SppA_67K signal pept 99.4 2.3E-12 5E-17 131.3 14.4 155 100-257 76-273 (584)
33 PF01343 Peptidase_S49: Peptid 99.4 2.4E-12 5.1E-17 109.9 9.3 114 142-258 2-145 (154)
34 PRK10949 protease 4; Provision 99.3 1.9E-11 4E-16 125.2 14.2 156 100-258 95-293 (618)
35 cd06558 crotonase-like Crotona 99.0 1.4E-08 3E-13 88.5 14.7 141 96-255 22-183 (195)
36 COG3904 Predicted periplasmic 99.0 5.4E-09 1.2E-13 92.8 11.6 159 84-249 70-236 (245)
37 PRK05869 enoyl-CoA hydratase; 98.7 3.5E-07 7.6E-12 82.6 15.0 141 97-256 31-190 (222)
38 PRK08258 enoyl-CoA hydratase; 98.7 3.6E-07 7.8E-12 85.0 15.0 140 97-255 41-204 (277)
39 PRK06495 enoyl-CoA hydratase; 98.7 3.5E-07 7.6E-12 84.1 14.4 137 97-255 27-184 (257)
40 PRK06688 enoyl-CoA hydratase; 98.7 3.5E-07 7.6E-12 83.9 14.3 140 97-255 29-186 (259)
41 PRK07511 enoyl-CoA hydratase; 98.7 4.1E-07 8.9E-12 83.7 14.6 140 97-255 27-188 (260)
42 PRK03580 carnitinyl-CoA dehydr 98.7 5E-07 1.1E-11 83.2 14.3 140 97-255 26-184 (261)
43 PRK06143 enoyl-CoA hydratase; 98.6 7.4E-07 1.6E-11 82.0 13.8 139 97-255 31-189 (256)
44 PF00378 ECH: Enoyl-CoA hydrat 98.6 5.6E-07 1.2E-11 81.7 12.8 139 96-255 21-180 (245)
45 PRK11423 methylmalonyl-CoA dec 98.6 7E-07 1.5E-11 82.4 13.6 139 97-255 28-186 (261)
46 PRK06190 enoyl-CoA hydratase; 98.6 1.3E-06 2.8E-11 80.6 15.3 140 97-255 28-184 (258)
47 PRK06210 enoyl-CoA hydratase; 98.6 6.9E-07 1.5E-11 82.7 13.0 140 97-255 30-198 (272)
48 PRK07658 enoyl-CoA hydratase; 98.6 1.1E-06 2.3E-11 80.7 14.2 140 97-255 25-184 (257)
49 PRK05981 enoyl-CoA hydratase; 98.6 1E-06 2.3E-11 81.2 14.0 140 97-255 28-193 (266)
50 PRK09076 enoyl-CoA hydratase; 98.6 1.7E-06 3.6E-11 79.7 14.8 140 97-255 26-185 (258)
51 PRK07110 polyketide biosynthes 98.6 1.7E-06 3.6E-11 79.3 14.6 140 97-255 29-184 (249)
52 PRK09674 enoyl-CoA hydratase-i 98.6 9.5E-07 2.1E-11 81.1 13.0 140 97-255 26-182 (255)
53 PRK05980 enoyl-CoA hydratase; 98.6 1.1E-06 2.3E-11 80.9 13.4 140 97-255 27-190 (260)
54 PRK05809 3-hydroxybutyryl-CoA 98.6 1.1E-06 2.3E-11 80.9 13.3 138 97-255 28-187 (260)
55 PRK08150 enoyl-CoA hydratase; 98.6 2.2E-06 4.7E-11 78.9 15.1 139 97-256 26-183 (255)
56 PRK08260 enoyl-CoA hydratase; 98.6 1.3E-06 2.8E-11 82.1 13.8 141 96-255 27-203 (296)
57 TIGR03210 badI 2-ketocyclohexa 98.6 1E-06 2.3E-11 81.0 12.6 140 97-255 26-184 (256)
58 PLN02600 enoyl-CoA hydratase 98.5 1.9E-06 4E-11 79.1 14.2 140 97-255 19-178 (251)
59 TIGR01929 menB naphthoate synt 98.5 1.5E-06 3.3E-11 80.1 13.5 140 97-255 27-187 (259)
60 PRK07509 enoyl-CoA hydratase; 98.5 1.8E-06 3.9E-11 79.4 14.0 138 96-252 26-189 (262)
61 PRK06023 enoyl-CoA hydratase; 98.5 1.5E-06 3.3E-11 79.6 13.5 141 96-255 29-187 (251)
62 PRK08138 enoyl-CoA hydratase; 98.5 1.4E-06 3E-11 80.3 13.2 140 97-255 32-188 (261)
63 TIGR03189 dienoyl_CoA_hyt cycl 98.5 2.6E-06 5.5E-11 78.3 14.8 137 97-253 24-176 (251)
64 PLN02921 naphthoate synthase 98.5 1.5E-06 3.3E-11 83.0 13.7 140 97-255 91-251 (327)
65 PLN02664 enoyl-CoA hydratase/d 98.5 1.9E-06 4.2E-11 80.0 13.9 138 97-253 32-199 (275)
66 PRK05864 enoyl-CoA hydratase; 98.5 1.6E-06 3.5E-11 80.6 13.3 141 97-255 34-200 (276)
67 PLN02888 enoyl-CoA hydratase 98.5 2.4E-06 5.3E-11 79.0 14.3 140 97-255 34-189 (265)
68 PRK07938 enoyl-CoA hydratase; 98.5 1.8E-06 4E-11 79.1 13.3 137 97-255 25-181 (249)
69 PRK09245 enoyl-CoA hydratase; 98.5 1.7E-06 3.8E-11 79.8 13.2 140 97-255 27-193 (266)
70 PRK07854 enoyl-CoA hydratase; 98.5 2.1E-06 4.6E-11 78.4 13.5 138 96-253 23-174 (243)
71 PRK08139 enoyl-CoA hydratase; 98.5 3.5E-06 7.5E-11 78.0 15.0 139 97-255 35-193 (266)
72 PRK07396 dihydroxynaphthoic ac 98.5 1.9E-06 4.1E-11 80.0 13.3 141 96-255 36-197 (273)
73 PRK06142 enoyl-CoA hydratase; 98.5 2.7E-06 5.8E-11 78.8 14.2 138 97-253 30-197 (272)
74 PRK06127 enoyl-CoA hydratase; 98.5 3.5E-06 7.6E-11 78.0 14.8 140 97-255 35-196 (269)
75 PLN03214 probable enoyl-CoA hy 98.5 1.7E-06 3.7E-11 80.7 12.7 142 96-255 34-198 (278)
76 TIGR02280 PaaB1 phenylacetate 98.5 2.8E-06 6E-11 78.0 13.8 139 97-255 23-183 (256)
77 PRK07657 enoyl-CoA hydratase; 98.5 3.9E-06 8.5E-11 77.2 14.4 138 97-255 28-187 (260)
78 PRK05995 enoyl-CoA hydratase; 98.5 3.4E-06 7.3E-11 77.7 13.9 139 97-255 28-188 (262)
79 PRK07327 enoyl-CoA hydratase; 98.5 2.9E-06 6.3E-11 78.5 13.5 140 97-255 36-196 (268)
80 PRK07468 enoyl-CoA hydratase; 98.5 2.2E-06 4.8E-11 79.0 12.5 139 97-255 29-189 (262)
81 PRK05862 enoyl-CoA hydratase; 98.5 2.9E-06 6.4E-11 77.9 13.0 140 97-255 28-184 (257)
82 PRK06144 enoyl-CoA hydratase; 98.5 2.8E-06 6.1E-11 78.4 12.9 141 96-255 31-193 (262)
83 PRK07260 enoyl-CoA hydratase; 98.5 2.5E-06 5.4E-11 78.3 12.3 138 97-255 26-188 (255)
84 PRK08788 enoyl-CoA hydratase; 98.5 3.8E-06 8.2E-11 78.9 13.8 140 97-255 40-211 (287)
85 PRK06563 enoyl-CoA hydratase; 98.4 4.5E-06 9.8E-11 76.6 14.0 140 97-255 23-182 (255)
86 PRK06072 enoyl-CoA hydratase; 98.4 5.9E-06 1.3E-10 75.7 14.6 134 97-250 24-173 (248)
87 PRK06494 enoyl-CoA hydratase; 98.4 3.5E-06 7.6E-11 77.6 13.2 140 97-255 28-184 (259)
88 PRK06213 enoyl-CoA hydratase; 98.4 5.7E-06 1.2E-10 74.8 14.3 136 97-255 26-182 (229)
89 PRK08290 enoyl-CoA hydratase; 98.4 1.8E-06 3.8E-11 81.0 11.3 138 97-255 28-206 (288)
90 PLN02851 3-hydroxyisobutyryl-C 98.4 5.3E-06 1.2E-10 81.5 14.9 147 89-255 53-227 (407)
91 PRK08140 enoyl-CoA hydratase; 98.4 4.4E-06 9.6E-11 76.9 13.3 139 97-255 28-189 (262)
92 PRK09120 p-hydroxycinnamoyl Co 98.4 4.7E-06 1E-10 77.5 13.5 140 97-255 32-194 (275)
93 PRK08252 enoyl-CoA hydratase; 98.4 5.9E-06 1.3E-10 75.9 13.8 140 97-255 27-181 (254)
94 PRK05674 gamma-carboxygeranoyl 98.4 5.9E-06 1.3E-10 76.4 13.7 139 97-255 30-190 (265)
95 TIGR03200 dearomat_oah 6-oxocy 98.4 7.3E-06 1.6E-10 79.1 14.5 140 97-255 52-214 (360)
96 PRK08259 enoyl-CoA hydratase; 98.4 5.9E-06 1.3E-10 76.0 13.4 141 97-256 27-184 (254)
97 PRK08321 naphthoate synthase; 98.4 8.3E-06 1.8E-10 77.0 14.6 140 97-255 49-226 (302)
98 PRK07799 enoyl-CoA hydratase; 98.4 8.7E-06 1.9E-10 75.0 14.4 140 97-255 29-190 (263)
99 PRK12319 acetyl-CoA carboxylas 98.4 9.5E-06 2.1E-10 75.1 14.2 134 89-253 71-214 (256)
100 PRK05724 acetyl-CoA carboxylas 98.4 5.7E-06 1.2E-10 78.6 12.9 131 92-253 127-267 (319)
101 PRK08272 enoyl-CoA hydratase; 98.4 8.3E-06 1.8E-10 76.8 13.8 137 97-255 34-214 (302)
102 TIGR00513 accA acetyl-CoA carb 98.4 3.8E-06 8.3E-11 79.7 11.4 130 93-253 128-267 (316)
103 CHL00198 accA acetyl-CoA carbo 98.3 6.6E-06 1.4E-10 78.2 12.6 130 93-253 131-270 (322)
104 PRK12478 enoyl-CoA hydratase; 98.3 5.2E-06 1.1E-10 78.2 11.5 136 97-255 29-199 (298)
105 PLN03230 acetyl-coenzyme A car 98.3 6.2E-06 1.3E-10 80.6 12.2 128 95-253 200-337 (431)
106 PRK07112 polyketide biosynthes 98.3 1.2E-05 2.6E-10 73.9 13.6 137 97-255 28-185 (255)
107 PLN02267 enoyl-CoA hydratase/i 98.3 2.6E-05 5.6E-10 71.2 15.6 138 97-253 23-184 (239)
108 PRK05870 enoyl-CoA hydratase; 98.3 4.3E-06 9.3E-11 76.6 10.1 133 97-251 27-181 (249)
109 PRK07827 enoyl-CoA hydratase; 98.3 1.5E-05 3.2E-10 73.4 13.4 134 97-252 30-187 (260)
110 PRK07659 enoyl-CoA hydratase; 98.3 1E-05 2.3E-10 74.4 12.1 133 97-251 30-184 (260)
111 COG1024 CaiD Enoyl-CoA hydrata 98.3 1.2E-05 2.5E-10 73.9 12.4 136 96-253 28-186 (257)
112 KOG1680 Enoyl-CoA hydratase [L 98.3 6.7E-06 1.5E-10 76.2 10.2 138 97-256 61-218 (290)
113 PLN02157 3-hydroxyisobutyryl-C 98.2 3E-05 6.5E-10 76.1 14.7 139 97-255 61-222 (401)
114 PLN02874 3-hydroxyisobutyryl-C 98.2 3.6E-05 7.7E-10 75.0 14.2 140 97-256 35-195 (379)
115 PRK08184 benzoyl-CoA-dihydrodi 98.2 1.4E-05 3.1E-10 81.3 11.9 142 97-255 49-218 (550)
116 PLN02988 3-hydroxyisobutyryl-C 98.2 4.2E-05 9E-10 74.7 14.6 139 97-255 33-194 (381)
117 TIGR02440 FadJ fatty oxidation 98.2 2.8E-05 6.1E-10 81.3 14.2 140 97-255 26-188 (699)
118 PRK05617 3-hydroxyisobutyryl-C 98.2 1.1E-05 2.4E-10 77.5 10.2 137 97-256 27-190 (342)
119 PLN03229 acetyl-coenzyme A car 98.2 1.9E-05 4E-10 81.7 12.0 131 92-253 218-358 (762)
120 TIGR02437 FadB fatty oxidation 98.2 4.3E-05 9.3E-10 80.1 15.0 140 97-255 31-192 (714)
121 PRK11730 fadB multifunctional 98.2 2.9E-05 6.3E-10 81.4 13.7 140 97-255 31-192 (715)
122 PRK11154 fadJ multifunctional 98.1 6E-05 1.3E-09 78.9 15.0 140 97-255 31-193 (708)
123 TIGR03222 benzo_boxC benzoyl-C 98.1 3.6E-05 7.9E-10 78.3 12.2 155 97-267 45-237 (546)
124 TIGR03134 malonate_gamma malon 98.0 0.00014 3.1E-09 66.6 13.1 132 97-256 45-192 (238)
125 TIGR02441 fa_ox_alpha_mit fatt 97.9 0.00014 3E-09 76.6 13.6 137 97-253 38-198 (737)
126 TIGR03222 benzo_boxC benzoyl-C 97.8 0.00026 5.5E-09 72.2 12.9 142 97-255 295-467 (546)
127 TIGR01117 mmdA methylmalonyl-C 97.8 0.00022 4.7E-09 72.2 11.2 142 94-255 328-483 (512)
128 PRK08184 benzoyl-CoA-dihydrodi 97.6 0.00063 1.4E-08 69.4 11.5 143 96-255 298-471 (550)
129 PLN02820 3-methylcrotonyl-CoA 97.4 0.0016 3.4E-08 66.7 12.4 152 94-255 379-542 (569)
130 KOG1681 Enoyl-CoA isomerase [L 97.4 0.00022 4.8E-09 64.8 4.8 105 134-256 114-218 (292)
131 PRK05654 acetyl-CoA carboxylas 97.3 0.0037 8.1E-08 59.0 12.8 125 93-255 133-268 (292)
132 PF01039 Carboxyl_trans: Carbo 97.3 0.00062 1.3E-08 68.6 8.0 148 94-255 307-466 (493)
133 COG0825 AccA Acetyl-CoA carbox 97.3 0.0011 2.4E-08 62.1 8.8 107 118-253 150-266 (317)
134 TIGR00515 accD acetyl-CoA carb 97.1 0.0058 1.3E-07 57.6 11.4 125 93-255 132-267 (285)
135 TIGR03133 malonate_beta malona 97.0 0.006 1.3E-07 57.1 10.0 93 93-187 71-177 (274)
136 PRK07189 malonate decarboxylas 96.8 0.0078 1.7E-07 57.1 9.2 92 93-186 80-185 (301)
137 COG0447 MenB Dihydroxynaphthoi 96.4 0.012 2.5E-07 53.5 7.3 137 98-255 44-206 (282)
138 KOG1679 Enoyl-CoA hydratase [L 96.3 0.0093 2E-07 54.0 6.2 132 101-255 59-214 (291)
139 PF06833 MdcE: Malonate decarb 95.9 0.079 1.7E-06 48.5 10.4 114 114-255 60-189 (234)
140 PLN02820 3-methylcrotonyl-CoA 95.2 0.13 2.7E-06 53.0 9.8 90 93-186 141-244 (569)
141 COG4799 Acetyl-CoA carboxylase 94.4 0.17 3.8E-06 51.3 8.4 93 93-187 336-440 (526)
142 CHL00174 accD acetyl-CoA carbo 94.2 0.27 5.9E-06 46.6 8.8 91 93-187 145-247 (296)
143 KOG1682 Enoyl-CoA isomerase [L 93.5 0.31 6.8E-06 44.0 7.3 99 137-255 116-214 (287)
144 KOG0016 Enoyl-CoA hydratase/is 93.3 0.66 1.4E-05 43.1 9.4 136 97-253 32-195 (266)
145 TIGR01117 mmdA methylmalonyl-C 92.5 0.61 1.3E-05 47.5 8.8 91 93-187 94-194 (512)
146 PF01039 Carboxyl_trans: Carbo 90.3 0.46 1E-05 48.0 5.3 90 94-187 70-171 (493)
147 cd07560 Peptidase_S41_CPP C-te 89.9 1.9 4.2E-05 38.6 8.5 72 97-169 58-154 (211)
148 cd06567 Peptidase_S41 C-termin 89.6 2 4.4E-05 38.1 8.4 73 94-168 67-166 (224)
149 TIGR00225 prc C-terminal pepti 87.9 2.6 5.7E-05 40.1 8.4 80 89-169 152-257 (334)
150 cd07561 Peptidase_S41_CPP_like 86.0 4.8 0.0001 37.2 8.7 56 87-144 63-121 (256)
151 PLN00049 carboxyl-terminal pro 85.8 4.3 9.4E-05 39.7 8.8 78 88-166 194-299 (389)
152 PRK11186 carboxy-terminal prot 84.5 4.5 9.7E-05 42.6 8.6 79 88-167 353-458 (667)
153 COG0777 AccD Acetyl-CoA carbox 81.0 9.1 0.0002 36.1 8.3 88 92-187 133-235 (294)
154 smart00245 TSPc tail specific 80.7 13 0.00028 32.5 8.9 80 88-168 28-134 (192)
155 COG0793 Prc Periplasmic protea 80.1 7.5 0.00016 38.5 7.9 79 90-169 205-310 (406)
156 PF08496 Peptidase_S49_N: Pept 79.0 4.6 0.0001 34.8 5.4 42 93-134 105-147 (155)
157 PF03572 Peptidase_S41: Peptid 78.8 6.2 0.00013 32.8 6.1 68 100-168 15-112 (169)
158 KOG1684 Enoyl-CoA hydratase [L 78.2 8.1 0.00018 37.8 7.2 97 87-185 47-179 (401)
159 KOG0540 3-Methylcrotonyl-CoA c 76.9 21 0.00045 36.0 9.7 87 94-184 362-461 (536)
160 cd07562 Peptidase_S41_TRI Tric 73.1 19 0.00041 33.1 8.1 81 84-169 83-186 (266)
161 cd07563 Peptidase_S41_IRBP Int 72.2 21 0.00045 32.3 8.1 63 103-168 83-179 (250)
162 COG4799 Acetyl-CoA carboxylase 66.3 15 0.00033 37.6 6.3 89 94-186 104-202 (526)
163 TIGR02886 spore_II_AA anti-sig 55.3 84 0.0018 24.0 7.7 75 90-168 11-91 (106)
164 PLN00125 Succinyl-CoA ligase [ 53.3 38 0.00083 32.2 6.3 65 89-158 179-245 (300)
165 COG0074 SucD Succinyl-CoA synt 51.7 46 0.00099 31.6 6.4 67 103-181 186-253 (293)
166 cd07043 STAS_anti-anti-sigma_f 51.3 92 0.002 22.9 7.2 79 89-168 10-90 (99)
167 COG0757 AroQ 3-dehydroquinate 51.2 45 0.00098 28.4 5.7 31 123-154 70-100 (146)
168 cd07041 STAS_RsbR_RsbS_like Su 49.2 1.2E+02 0.0026 23.3 8.4 79 90-168 13-93 (109)
169 TIGR00377 ant_ant_sig anti-ant 49.1 1.1E+02 0.0024 23.2 7.5 73 90-166 15-93 (108)
170 PF01740 STAS: STAS domain; I 47.9 1.3E+02 0.0028 23.3 8.2 80 89-168 11-100 (117)
171 PTZ00187 succinyl-CoA syntheta 47.1 57 0.0012 31.3 6.5 66 89-158 198-264 (317)
172 PF13607 Succ_CoA_lig: Succiny 41.6 66 0.0014 26.9 5.3 61 88-156 29-91 (138)
173 PRK13015 3-dehydroquinate dehy 38.7 60 0.0013 27.8 4.6 46 104-154 56-101 (146)
174 PRK05395 3-dehydroquinate dehy 37.6 66 0.0014 27.5 4.7 46 104-154 56-101 (146)
175 cd02067 B12-binding B12 bindin 37.5 2E+02 0.0043 22.5 8.3 72 89-169 29-104 (119)
176 cd01455 vWA_F11C1-5a_type Von 37.5 1.4E+02 0.0031 26.5 7.1 74 80-156 75-152 (191)
177 cd00466 DHQase_II Dehydroquina 37.3 68 0.0015 27.3 4.7 46 104-154 54-99 (140)
178 COG3904 Predicted periplasmic 36.2 79 0.0017 28.9 5.2 69 93-165 53-129 (245)
179 TIGR01088 aroQ 3-dehydroquinat 35.7 71 0.0015 27.2 4.6 46 104-154 54-99 (141)
180 TIGR01579 MiaB-like-C MiaB-lik 34.9 1.4E+02 0.0031 29.1 7.3 70 91-160 2-77 (414)
181 PF02310 B12-binding: B12 bind 33.1 2.3E+02 0.005 21.9 7.5 68 89-165 30-98 (121)
182 COG1366 SpoIIAA Anti-anti-sigm 32.5 2.5E+02 0.0054 22.1 7.4 77 90-168 16-96 (117)
183 TIGR00282 metallophosphoestera 31.8 94 0.002 29.0 5.2 65 89-153 2-66 (266)
184 PRK06091 membrane protein FdrA 31.3 1.1E+02 0.0024 31.7 6.0 52 105-158 240-291 (555)
185 PRK13170 hisH imidazole glycer 29.5 47 0.001 29.1 2.7 29 128-156 45-80 (196)
186 TIGR02364 dha_pts dihydroxyace 29.5 2.5E+02 0.0054 23.0 6.8 55 88-145 28-85 (125)
187 COG1512 Beta-propeller domains 29.5 1.2E+02 0.0026 28.5 5.5 55 87-141 33-89 (271)
188 PF00681 Plectin: Plectin repe 27.9 39 0.00084 22.6 1.5 19 231-249 17-35 (45)
189 PF14566 PTPlike_phytase: Inos 27.9 1.6E+02 0.0034 24.7 5.6 51 88-143 91-149 (149)
190 TIGR00661 MJ1255 conserved hyp 26.9 1E+02 0.0022 28.8 4.6 35 121-156 2-37 (321)
191 PLN02918 pyridoxine (pyridoxam 26.8 2.4E+02 0.0052 29.2 7.5 35 121-155 137-171 (544)
192 cd01026 TOPRIM_OLD TOPRIM_OLD: 26.6 1.7E+02 0.0037 22.3 5.2 66 85-157 1-66 (97)
193 PF14538 Raptor_N: Raptor N-te 26.5 1.2E+02 0.0026 25.9 4.6 62 101-164 73-150 (154)
194 PF00549 Ligase_CoA: CoA-ligas 25.5 2.1E+02 0.0045 24.5 5.8 57 103-159 59-121 (153)
195 cd06844 STAS Sulphate Transpor 24.3 3.2E+02 0.0069 20.7 8.2 37 89-125 10-46 (100)
196 smart00250 PLEC Plectin repeat 24.3 50 0.0011 21.2 1.4 19 232-250 18-36 (38)
197 PF00919 UPF0004: Uncharacteri 23.6 3.6E+02 0.0078 21.0 6.7 57 90-146 4-63 (98)
198 cd07382 MPP_DR1281 Deinococcus 23.4 1.6E+02 0.0035 27.2 5.1 63 89-153 1-65 (255)
199 PRK00286 xseA exodeoxyribonucl 23.2 5E+02 0.011 25.6 9.0 77 100-183 176-257 (438)
200 cd01452 VWA_26S_proteasome_sub 22.5 3.7E+02 0.0079 23.7 7.0 40 118-157 107-147 (187)
201 cd05014 SIS_Kpsf KpsF-like pro 20.9 4.1E+02 0.0088 20.7 7.6 37 118-155 47-83 (128)
202 PLN02522 ATP citrate (pro-S)-l 20.6 2.6E+02 0.0056 29.4 6.4 65 89-158 196-262 (608)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-54 Score=385.93 Aligned_cols=179 Identities=54% Similarity=0.892 Sum_probs=176.2
Q ss_pred CCCccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 75 RGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 75 ~~~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
+..++|++++|+++|||||+++||+++++.|++||++|+.+++.++|++|||||||++++|++|||+|+.++.||.|+|.
T Consensus 79 ~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~ 158 (275)
T KOG0840|consen 79 RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICV 158 (275)
T ss_pred CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeeh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|+|||+|++|+++|.||+|+++|||++|||||.+++.|++.|+.++++|++++++.+.++|+++||++.|+|.++++||+
T Consensus 159 G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~ 238 (275)
T KOG0840|consen 159 GLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDR 238 (275)
T ss_pred hhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCC
Q 041849 235 YMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~ 253 (293)
||+|+||++|||||+|++.
T Consensus 239 fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 239 FMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred cCCHHHHHHhcchhhhhcC
Confidence 9999999999999999997
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-51 Score=363.68 Aligned_cols=192 Identities=51% Similarity=0.849 Sum_probs=182.1
Q ss_pred CCCccccCCCCc-cchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhc
Q 041849 67 PQTPATAMRGAE-ADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLV 145 (293)
Q Consensus 67 ~~~~~~~~~~~~-~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~ 145 (293)
|...+...++++ +|+|++++++|+|||+|+|++..++.++.||.+++.+++.++|+||||||||+|++|++|||+|+..
T Consensus 5 ~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i 84 (200)
T COG0740 5 PMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI 84 (200)
T ss_pred ccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc
Confidence 334444455555 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 041849 146 RADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQ 225 (293)
Q Consensus 146 ~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~ 225 (293)
++||+|+|.|+|||||++|+++|++|+|+++|||++|||||+++..|+++|++++++++.+++..+.++|+++||++.++
T Consensus 85 k~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~ 164 (200)
T COG0740 85 KPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEK 164 (200)
T ss_pred CCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 226 VQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 226 i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
+.+++++|+||+|+||++|||||+|++..+..+
T Consensus 165 i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~~ 197 (200)
T COG0740 165 IEKDTDRDTWMSAEEAKEYGLIDKVIESREAAA 197 (200)
T ss_pred HHHhhcccccCCHHHHHHcCCcceecccccccc
Confidence 999999999999999999999999999876543
No 3
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=5.6e-49 Score=353.43 Aligned_cols=177 Identities=50% Similarity=0.837 Sum_probs=172.9
Q ss_pred ccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccch
Q 041849 78 EADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 78 ~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~A 157 (293)
..|++++|+++|||||+|+||+.+++.+++||++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 44 ~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~A 123 (221)
T PRK14514 44 QMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMA 123 (221)
T ss_pred ccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 48999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
||||++|+++|++|+|++.|||++|+|||+++..|++.|+..+++++.++++.+.++|+++||++.++|.+++++|+||+
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmt 203 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMT 203 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCC
Q 041849 238 PIEAVEYGIIDGVIDRD 254 (293)
Q Consensus 238 a~EAle~GLID~I~~~~ 254 (293)
|+||++|||||+|++..
T Consensus 204 A~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 204 AQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHcCCccEEeecC
Confidence 99999999999998753
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=345.48 Aligned_cols=179 Identities=42% Similarity=0.750 Sum_probs=174.1
Q ss_pred CccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 041849 77 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 77 ~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~ 156 (293)
.+.|+++.|+++||+||+|+|++++++.|+++|++++.+++.++|+||||||||+|++|++|||+|+.++.+|+|+|.|+
T Consensus 16 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 16 RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGI 95 (201)
T ss_pred cccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEee
Confidence 34899999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|||||++|+++|++|+|++.|||++|||||+++..|++.|+..++++++++++.+.++|+++||++.++|.+++++++||
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~m 175 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFM 175 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
||+||++|||||+|++..+
T Consensus 176 sa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 176 SPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred CHHHHHHcCCCcEEeccCC
Confidence 9999999999999998744
No 5
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.5e-48 Score=350.19 Aligned_cols=178 Identities=42% Similarity=0.709 Sum_probs=172.8
Q ss_pred ccchhhhhccCcEEEEcceeCHh----------HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCC---------HHHHHHH
Q 041849 78 EADAMGLLLKERIVFLGNNIDDF----------VADAIISQLLLLDAQDPTKDIRLFVNSPGGS---------LSATMAI 138 (293)
Q Consensus 78 ~~di~~~l~~~riifL~G~Id~~----------~a~~ii~qL~~l~~~~~~~~I~L~INSPGGs---------V~ag~aI 138 (293)
+.|++++|+++|||||+|+|+++ +++.+++||++++.+++.++|+||||||||+ +++|++|
T Consensus 20 ~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaI 99 (222)
T PRK12552 20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI 99 (222)
T ss_pred CcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHH
Confidence 48999999999999999999999 9999999999999999899999999999988 7888999
Q ss_pred HHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 041849 139 YDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGF 218 (293)
Q Consensus 139 yd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~ 218 (293)
||+|+.++.+|+|+|.|+|||+|++|+++|++|+|++.|||++|||||+++..|++.|+..++++++++++.+.++|+++
T Consensus 100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~ 179 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN 179 (222)
T ss_pred HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 219 TGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 219 tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
||++.++|.+++++++||||+||++|||||+|++...
T Consensus 180 TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 180 TGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred HCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 9999999999999999999999999999999998754
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=6.6e-48 Score=342.53 Aligned_cols=178 Identities=42% Similarity=0.709 Sum_probs=173.3
Q ss_pred CccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 041849 77 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 77 ~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~ 156 (293)
.+.|++++|+++|||||+|+||+++++.+++||++++.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|+
T Consensus 19 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 19 TWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred ccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEe
Confidence 34899999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGG-ASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~-~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
|||||++|+++|++|+|++.|||++|+|||+++ ..|++.|+..++++++++++.+.++|+++||++.+++.+++++++|
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~ 178 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVF 178 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 999999999999999999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRD 254 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~ 254 (293)
|+|+||++|||||+|++..
T Consensus 179 lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 179 MSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CCHHHHHHcCCCcEEeecC
Confidence 9999999999999999764
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=7.8e-48 Score=341.01 Aligned_cols=177 Identities=49% Similarity=0.807 Sum_probs=173.2
Q ss_pred ccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccch
Q 041849 78 EADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 78 ~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~A 157 (293)
..|++++|+++||+||+|+||+.+++.++++|.+++.+++.++|+||||||||+|++|++|||+|+.++.+|+|+|.|+|
T Consensus 15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 48999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
||||++|+++|++|+|++.|||++|+|||+++..|++.|+..++++++++++.+.++|+++||++.++|.+++++++|||
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms 174 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMS 174 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCC
Q 041849 238 PIEAVEYGIIDGVIDRD 254 (293)
Q Consensus 238 a~EAle~GLID~I~~~~ 254 (293)
|+||++|||||+|++..
T Consensus 175 a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 175 PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999999874
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8.7e-45 Score=322.00 Aligned_cols=182 Identities=32% Similarity=0.585 Sum_probs=174.7
Q ss_pred CCCCccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 041849 74 MRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 74 ~~~~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv 153 (293)
++..+.+++++++++|+|||.|+|++++++.|+++|.+++..++.++|+|+||||||+|++|++|||+|+.++.||+|+|
T Consensus 9 ~~~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 9 KQTGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred ccCCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 45667889999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|||||++|+++|++|+|+++|||++|+|||+++..|++.++..++++++++++.+.++|+++||++.+++.++++++
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d 168 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD 168 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
+||||+||++|||||+|.+...
T Consensus 169 ~~lta~EA~~yGliD~I~~~~~ 190 (197)
T PRK14512 169 FWLDSSSAVKYGLVFEVVETRL 190 (197)
T ss_pred cccCHHHHHHcCCccEeecCcH
Confidence 9999999999999999998754
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.1e-44 Score=319.95 Aligned_cols=176 Identities=52% Similarity=0.884 Sum_probs=170.9
Q ss_pred CccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 041849 77 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 77 ~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~ 156 (293)
...|+++.|+++|+|||+|+|++.+++.++.+|.+++.+++.++|+|+||||||++++|++|||+|+.++.+|+|+|.|+
T Consensus 15 ~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~ 94 (191)
T TIGR00493 15 RSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQ 94 (191)
T ss_pred ccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 34999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|||||++|+++|++++|++.|||++|+|+|+++..|++.|++.++++++++++.+.++|+++||++.+++++++++++||
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~l 174 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFM 174 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecC
Q 041849 237 SPIEAVEYGIIDGVID 252 (293)
Q Consensus 237 sa~EAle~GLID~I~~ 252 (293)
+|+||++|||||+|++
T Consensus 175 ta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 175 SAEEAKEYGLIDSVLT 190 (191)
T ss_pred cHHHHHHcCCccEEec
Confidence 9999999999999975
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.4e-43 Score=311.81 Aligned_cols=180 Identities=50% Similarity=0.889 Sum_probs=173.6
Q ss_pred CCccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 041849 76 GAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 76 ~~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G 155 (293)
...+|+++.|+++|+|||+|+|++.+++.++++|.+++.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus 19 ~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 98 (200)
T PRK00277 19 ERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIG 98 (200)
T ss_pred cccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 34589999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|+|+|++|+++|++++|++.|++++|+|+|+++..|++.+++.++++++++++.+.++|+++||++.+++++++++++|
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNF 178 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
|+|+||++|||||+|++..+
T Consensus 179 lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 179 MSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred ccHHHHHHcCCccEEeecCC
Confidence 99999999999999998743
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1e-42 Score=310.91 Aligned_cols=181 Identities=47% Similarity=0.846 Sum_probs=173.4
Q ss_pred CccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 041849 77 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 77 ~~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~ 156 (293)
...|+++.++++|+|||+|+|++.+++.|+++|.+++.+++.++|+|+||||||++.+|++|||+|+.++.||+|+|.|.
T Consensus 24 ~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~ 103 (207)
T PRK12553 24 KESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQ 103 (207)
T ss_pred ccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 34899999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeeccc--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPM--GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~--~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|+|||++|+++|++|+|++.|+|++|+|+|+ ++..|++.++..++++++++++.+.++|+++||++.+++++++++++
T Consensus 104 aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~ 183 (207)
T PRK12553 104 AASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDK 183 (207)
T ss_pred hhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999998 56789999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCCCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDSII 257 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~~~ 257 (293)
||+|+||++|||||+|+++...+
T Consensus 184 ~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 184 WLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred cccHHHHHHcCCccEEcCchhhc
Confidence 99999999999999999886543
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=3.8e-43 Score=306.36 Aligned_cols=176 Identities=44% Similarity=0.712 Sum_probs=167.4
Q ss_pred ccchhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccch
Q 041849 78 EADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 78 ~~di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++|++++++++|+|||.|+||+++++.++++|.+++++++.++|+|+||||||+|.+|++|||+|+.++.+|+|+|.|.|
T Consensus 6 ~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 6 WYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp EEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred EEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 49999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
+|||++|+++|++++|++.|+|.||+|+|..+..|+..++..+.+++.++++.+.++|+++||++.+++.+++++++||+
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 99999999999998899999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCC
Q 041849 238 PIEAVEYGIIDGVIDR 253 (293)
Q Consensus 238 a~EAle~GLID~I~~~ 253 (293)
|+||++|||||+|++.
T Consensus 166 a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 166 AEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHTSSSEEESS
T ss_pred HHHHHHcCCCCEeccC
Confidence 9999999999999975
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=3.1e-42 Score=298.96 Aligned_cols=171 Identities=55% Similarity=0.931 Sum_probs=166.4
Q ss_pred chhhhhccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhh
Q 041849 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 80 di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
|++++++++|++|++|+|++++++.++++|.+++.++..++|+|+||||||++.+|++||+.|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68899999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|++|+++|++|+|++.|+|++|+|+|+.+..|+..++..+++++.++++.+.++|+++||++.+++.+++++++||+|+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 041849 240 EAVEYGIIDGV 250 (293)
Q Consensus 240 EAle~GLID~I 250 (293)
||++|||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.4e-41 Score=292.88 Aligned_cols=162 Identities=43% Similarity=0.716 Sum_probs=158.4
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCC
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGG 168 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag 168 (293)
|+|||.|+|++.+++.|+++|.+++.+++.++|+|+||||||+++++++||++|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 78999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCce
Q 041849 169 TKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIID 248 (293)
Q Consensus 169 ~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID 248 (293)
++|+|+++|++++|+|+|+++..|+..|++.+.+++++.++.+.++|+++||++.+++++++++++||+|+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 041849 249 GV 250 (293)
Q Consensus 249 ~I 250 (293)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=3.3e-32 Score=232.84 Aligned_cols=156 Identities=29% Similarity=0.422 Sum_probs=148.3
Q ss_pred EEEEcceeCH---hHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHhc
Q 041849 90 IVFLGNNIDD---FVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILG 166 (293)
Q Consensus 90 iifL~G~Id~---~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ 166 (293)
-|+|.|+|++ .+++.+.+.|..+..+ ++|+|+||||||++.++++|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4789999999 7999999999987754 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCC
Q 041849 167 GGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGI 246 (293)
Q Consensus 167 ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GL 246 (293)
+|++ |++.|+++||+|+|..+..|+..++....++++++++.+.+.|++++|++.+++.+++.+++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9996 99999999999999988888888888888999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 041849 247 IDGV 250 (293)
Q Consensus 247 ID~I 250 (293)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.97 E-value=6e-31 Score=228.76 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=139.0
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---cchhhHHHHHhc
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL---GMSASTASLILG 166 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~---G~AASag~lIl~ 166 (293)
++-+.|.|++...+.+.+.|..+.. ++.+.|+|+||||||++.++++||+.|+..++||+++|. |+|+|||++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 5678999999999999999988775 468999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCcEEEecceeeeeecccCCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 167 GGTKGKRFAMPNTRVMIHQPMGGASGQ-----VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 167 ag~kg~R~a~P~S~imiH~p~~~~~G~-----~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
+|++ |+|.|++++|.|+|..+ .|+ ..+.+.+..++.++++ +++++|++.+.++++++++.|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9997 99999999999999754 344 4455555555554444 999999999999999999999999999
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
++||+||.|..+.+
T Consensus 154 ~~~G~iD~ia~~~~ 167 (172)
T cd07015 154 LKYGVIEVVARDIN 167 (172)
T ss_pred HHcCCceeeeCCHH
Confidence 99999999998854
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=5.2e-30 Score=218.73 Aligned_cols=159 Identities=32% Similarity=0.508 Sum_probs=147.8
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCC
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGT 169 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~ 169 (293)
+|+|+|+|++.+.+.+++.|..++.++..+.|+|++|||||++.++.+|+++|+.+++||++++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceeeeeecccCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCc
Q 041849 170 KGKRFAMPNTRVMIHQPMGGASGQV--LDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGII 247 (293)
Q Consensus 170 kg~R~a~P~S~imiH~p~~~~~G~~--~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLI 247 (293)
+ ||+.|++.+++|++..+..+.. .+.+...+.+..+.+.+.+.+++++|++.+++.+.+.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 6 9999999999999987655544 56565667788899999999999999999999999999999999999999999
Q ss_pred eee
Q 041849 248 DGV 250 (293)
Q Consensus 248 D~I 250 (293)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.95 E-value=5.8e-27 Score=205.96 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=139.5
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---cchhhHHHHHhc
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL---GMSASTASLILG 166 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~---G~AASag~lIl~ 166 (293)
+|.|.|.|+++.++.+.++|..+..+ +.+.|+|+||||||++.++.+|++.|+.+++||+++|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 67789999999999999999998865 47999999999999999999999999999999999998 999999999999
Q ss_pred CCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCC
Q 041849 167 GGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGI 246 (293)
Q Consensus 167 ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GL 246 (293)
+|+. |++.|+++|++|+|..+..+...+...+.+.+..+.. +...|++.+|++.+.+++++..+++|+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9997 9999999999999975433332233334444444543 577899999999999999998999999999999999
Q ss_pred ceeecCCC
Q 041849 247 IDGVIDRD 254 (293)
Q Consensus 247 ID~I~~~~ 254 (293)
||+|.+..
T Consensus 159 vd~v~~~~ 166 (187)
T cd07020 159 IDLIAADL 166 (187)
T ss_pred cccccCCH
Confidence 99999886
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.94 E-value=1.4e-25 Score=196.17 Aligned_cols=158 Identities=17% Similarity=0.251 Sum_probs=136.9
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCC
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGT 169 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~ 169 (293)
+|.+.|+|++..++.+.+.|..+..++ .+.|+|+||||||.+.++..|++.|+.+++||++++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 577899999999999999998887765 8899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC-------------ccc
Q 041849 170 KGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD-------------RYM 236 (293)
Q Consensus 170 kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~-------------~~l 236 (293)
+ ++|.|++.+|.|.|.....+...+ +.+...-..+.+.+++.+|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 6 999999999999998654443222 12333333446669999999999999999988 599
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
|++||+++|++|.|..+.+
T Consensus 155 ta~eA~~~g~~d~ia~~~~ 173 (178)
T cd07021 155 TADEALKVGYAEGIAGSLD 173 (178)
T ss_pred CHHHHHHhCCeEEEECCHH
Confidence 9999999999999987653
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=3.1e-22 Score=189.49 Aligned_cols=168 Identities=26% Similarity=0.252 Sum_probs=135.8
Q ss_pred EEEEcceeCHhH-------HHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCC--CeEEEEccchhhH
Q 041849 90 IVFLGNNIDDFV-------ADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRA--DVSTVALGMSAST 160 (293)
Q Consensus 90 iifL~G~Id~~~-------a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~--pV~tvv~G~AASa 160 (293)
+|.+.|.|.... .+.+.+.|..+..+++.++|.|+||||||+|.++..|+++|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 355688888554 6788888888888889999999999999999999999999998875 6999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCC------------------CCC-----------Ch-hHHHHHHHHHHHHHHH
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGG------------------ASG-----------QV-LDVEIQAREIMHNKDN 210 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~------------------~~G-----------~~-~dl~~~~~el~~~~~~ 210 (293)
||||+|+|++ ++|.|+|.++--.+... ..| .. ++.....+++++..+.
T Consensus 143 GY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999996 99999988653222110 011 11 2222233566778889
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCCCC
Q 041849 211 FTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLV 260 (293)
Q Consensus 211 i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~~~ 260 (293)
|.+.+++.++.+.+.+.+..+ +++|++++|++.||||++++.++++...
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~~~av~~~ 269 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGLDDAVKDA 269 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCHHHHHHHH
Confidence 999999999999988777555 7888999999999999999999877655
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.87 E-value=3.2e-21 Score=172.02 Aligned_cols=165 Identities=20% Similarity=0.274 Sum_probs=135.3
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEccchhhHHHHHhcC
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVR--ADVSTVALGMSASTASLILGG 167 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~--~pV~tvv~G~AASag~lIl~a 167 (293)
+|.+.|+|+ .+.+.+.+.|..+..++..+.|+|++|||||++..+..|+++|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 678899998 56788999999998888899999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcEEEecceeeeeecccC------------C------CCCC----------h--hHHHHHHHHHHHHHHHHHHHHHH
Q 041849 168 GTKGKRFAMPNTRVMIHQPMG------------G------ASGQ----------V--LDVEIQAREIMHNKDNFTRIISG 217 (293)
Q Consensus 168 g~kg~R~a~P~S~imiH~p~~------------~------~~G~----------~--~dl~~~~~el~~~~~~i~~~ya~ 217 (293)
|++ |++.|++.++...+.. | ..|. . ++.+...+.++.+.+.|.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 996 9999998765433211 0 0111 1 12222234556778888999999
Q ss_pred hhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 218 FTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 218 ~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
.+|++.+.++++++. ..|+++||+++||||+|+..++++.
T Consensus 161 ~R~~~~~~~~~~~~~-~~~~~~~A~~~gLvD~i~~~~~~~~ 200 (207)
T TIGR00706 161 GRNLPVEDVKKFADG-RVFTGRQALKLRLVDKLGTEDDALK 200 (207)
T ss_pred cCCCCHHHHHHHhcC-CcccHHHHHHcCCCcccCCHHHHHH
Confidence 999999999998875 5679999999999999998876544
No 22
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.86 E-value=3.1e-21 Score=195.81 Aligned_cols=169 Identities=24% Similarity=0.229 Sum_probs=137.7
Q ss_pred EEEEcceeCHh-------HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEccchhh
Q 041849 90 IVFLGNNIDDF-------VADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLV---RADVSTVALGMSAS 159 (293)
Q Consensus 90 iifL~G~Id~~-------~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~---~~pV~tvv~G~AAS 159 (293)
+|++.|+|.+. ..+.+.++|..+..++.++.|+|+||||||++.++..|+++|+.. ++||++++.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 67889999853 257788899998888889999999999999999999999998744 58999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceee------eeecccC------C------CCC-----------ChhHHHHHHHHHHHHHHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRV------MIHQPMG------G------ASG-----------QVLDVEIQAREIMHNKDN 210 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~i------miH~p~~------~------~~G-----------~~~dl~~~~~el~~~~~~ 210 (293)
+||+|+++|++ +++.|++.+ +.+.... | ..| +.++.+.....++...+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999996 999999876 3331100 0 011 223444445667788889
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCCCCC
Q 041849 211 FTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVP 261 (293)
Q Consensus 211 i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~~~~ 261 (293)
|.+.+++.+|++.++++++++ +++|+++||+++||||+|++.++++..++
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~-Grv~tg~eA~~~GLVD~ig~~~~Ai~~a~ 519 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQ-GRVWTGEDAVSNGLVDALGGLDEAVAKAA 519 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHh-CCCcCHHHHHHcCCcccCCCHHHHHHHHH
Confidence 999999999999999998877 57779999999999999999988877653
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.85 E-value=1.4e-20 Score=167.59 Aligned_cols=166 Identities=27% Similarity=0.320 Sum_probs=135.1
Q ss_pred EEEEcceeC---HhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEccchhhHHHH
Q 041849 90 IVFLGNNID---DFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLV---RADVSTVALGMSASTASL 163 (293)
Q Consensus 90 iifL~G~Id---~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~---~~pV~tvv~G~AASag~l 163 (293)
++.+.|+|+ ..+...++++|..++.++..+.|+|.+|||||++..+..|++.|+.. ++||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 678999999 78899999999999988889999999999999999999999988655 579999999999999999
Q ss_pred HhcCCCCCcEEEecceeeeeecccC------------C------CCC------C------hhHHHHHHHHHHHHHHHHHH
Q 041849 164 ILGGGTKGKRFAMPNTRVMIHQPMG------------G------ASG------Q------VLDVEIQAREIMHNKDNFTR 213 (293)
Q Consensus 164 Il~ag~kg~R~a~P~S~imiH~p~~------------~------~~G------~------~~dl~~~~~el~~~~~~i~~ 213 (293)
|+++|++ |++.|++.++...... | ..| + .++.+.....++.+.+.|.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 9999998874322110 0 011 1 12233333556678888999
Q ss_pred HHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 214 IISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 214 ~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
.+++.+|++.+++.++.+. ..|++++|+++||||+|+..++++.
T Consensus 162 ~Va~~R~~~~~~~~~~~~~-~~~~a~~A~~~gLiD~i~~~~~~~~ 205 (208)
T cd07023 162 VVAEGRGMSGERLDKLADG-RVWTGRQALELGLVDELGGLDDAIA 205 (208)
T ss_pred HHHhcCCCCHHHHHHhcCC-cEEEHHHHHHcCCCcccCCHHHHHH
Confidence 9999999999999987774 5568999999999999998776543
No 24
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.84 E-value=3.5e-20 Score=161.21 Aligned_cols=147 Identities=22% Similarity=0.170 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHH---hcCCCeEEEEccchhhHHHHHhcCCCCCcEEEec
Q 041849 101 VADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQ---LVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177 (293)
Q Consensus 101 ~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~---~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P 177 (293)
+.+.+.+.|..++.++..+.|+|.+|||||++.....+++.++ .+++||++++.|.|+|+|++|+++|+. +++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 3578999999999888899999999999999998888877665 457899999999999999999999996 99999
Q ss_pred ceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCC
Q 041849 178 NTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 178 ~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~ 256 (293)
++.|++|....+ .......+..+.+.+.+.+++.+|++.+++.+++..+.+|+|+||+++||||+|+..++.
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~ 172 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDA 172 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHH
Confidence 999999966543 111224566788889999999999999999999988899999999999999999986543
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.84 E-value=4.3e-20 Score=165.49 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=132.0
Q ss_pred EEEEcceeCH-----------hHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEccc
Q 041849 90 IVFLGNNIDD-----------FVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVR--ADVSTVALGM 156 (293)
Q Consensus 90 iifL~G~Id~-----------~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~--~pV~tvv~G~ 156 (293)
+|.+.|+|.+ .+...+++.|..++.++..+.|+|.+|||||++.....|+++|+.++ +||++++.|.
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3455666655 35689999999999888899999999999999999999999999987 9999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccC------------C------CCCC------------hhHHHHHHHHHHH
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMG------------G------ASGQ------------VLDVEIQAREIMH 206 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~------------~------~~G~------------~~dl~~~~~el~~ 206 (293)
|+|+|++++++|++ +++.|++.++...... | ..|. .++-+...+.++.
T Consensus 84 a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~ 161 (214)
T cd07022 84 AASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDA 161 (214)
T ss_pred hhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999996 9999999864332210 0 0111 1222222344567
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCC
Q 041849 207 NKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSII 257 (293)
Q Consensus 207 ~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~ 257 (293)
+.+.|.+.+++.+|++.+++.+.+ +.+|+++||+++||||+|+..++++
T Consensus 162 ~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 162 LYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 888899999999999999998877 6778999999999999999877644
No 26
>PRK10949 protease 4; Provisional
Probab=99.84 E-value=1.2e-20 Score=192.07 Aligned_cols=173 Identities=21% Similarity=0.197 Sum_probs=137.0
Q ss_pred cEEEEcceeCHh-------HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEccchh
Q 041849 89 RIVFLGNNIDDF-------VADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLV---RADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~Id~~-------~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~---~~pV~tvv~G~AA 158 (293)
-||.+.|.|.++ ..+.++++|..+..++.+++|+|+||||||++.++..|+++|+.. ++||++++.++||
T Consensus 329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 346679999764 356889999999999999999999999999999999999999654 5899999999999
Q ss_pred hHHHHHhcCCCCCcEEEecceeee------eeccc------CC------CCCC-----------hhHHHHHHHHHHHHHH
Q 041849 159 STASLILGGGTKGKRFAMPNTRVM------IHQPM------GG------ASGQ-----------VLDVEIQAREIMHNKD 209 (293)
Q Consensus 159 Sag~lIl~ag~kg~R~a~P~S~im------iH~p~------~~------~~G~-----------~~dl~~~~~el~~~~~ 209 (293)
|+||||+++|++ +|+.|++..+ .|.-. .| ..|. .++.+.....++...+
T Consensus 409 SggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~ 486 (618)
T PRK10949 409 SGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYK 486 (618)
T ss_pred cHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999996 9999976532 22110 00 0111 1222222345667788
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCCCCCCCc
Q 041849 210 NFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPE 264 (293)
Q Consensus 210 ~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~~~~~p~ 264 (293)
.|...+++.++++.++++++.+ +++|++++|+++||||++++.++++..++.-.
T Consensus 487 ~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a 540 (618)
T PRK10949 487 RFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 540 (618)
T ss_pred HHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCHHHHHHHHHHHc
Confidence 9999999999999999988665 68899999999999999999999888664333
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.81 E-value=3.9e-19 Score=159.07 Aligned_cols=166 Identities=23% Similarity=0.174 Sum_probs=131.9
Q ss_pred EEEEcceeCHhH-------HHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHH---HhcCCCeEEEEccchhh
Q 041849 90 IVFLGNNIDDFV-------ADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVV---QLVRADVSTVALGMSAS 159 (293)
Q Consensus 90 iifL~G~Id~~~-------a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I---~~~~~pV~tvv~G~AAS 159 (293)
||.+.|+|.+.. .+.+.+.|..+..++..+.|+|.+|||||++....+++++| +.+++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 566777776653 46799999999998889999999999999999998888865 45678999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeeccc------------CC-------CCCC----------hhHHHHHHHHHHHHHHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPM------------GG-------ASGQ----------VLDVEIQAREIMHNKDN 210 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~------------~~-------~~G~----------~~dl~~~~~el~~~~~~ 210 (293)
+|++|+++|++ +|+.|++.++..... .| ..|. .++-......++.+.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999996 999999876533321 00 0011 11112223456778889
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 211 FTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 211 i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
+.+.+++.++++.+++.+..+ +.+|+++||+++||||+|++.+++++
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 999999999999999988665 68999999999999999999877554
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.78 E-value=4.3e-18 Score=161.44 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=114.8
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhh-hCCCCCCeEEEEeCCCCCHHHHHHHHHH---HHhcCCCeEEEEccchhhHHHHHh
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLD-AQDPTKDIRLFVNSPGGSLSATMAIYDV---VQLVRADVSTVALGMSASTASLIL 165 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~-~~~~~~~I~L~INSPGGsV~ag~aIyd~---I~~~~~pV~tvv~G~AASag~lIl 165 (293)
||.+.|.|+......+.+.+..+. ...+.+.|+|+||||||+|.++..++.. ++..++||++++.++|||+||||+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 455689999876544444443321 1122378999999999999875555554 455668999999999999999999
Q ss_pred cCCCCCcEEEecceeeeeecccCC------------------CCCC----------h--hHHHHHHHHHHHHHHHHHHHH
Q 041849 166 GGGTKGKRFAMPNTRVMIHQPMGG------------------ASGQ----------V--LDVEIQAREIMHNKDNFTRII 215 (293)
Q Consensus 166 ~ag~kg~R~a~P~S~imiH~p~~~------------------~~G~----------~--~dl~~~~~el~~~~~~i~~~y 215 (293)
|+|++ +|+.|.+.++....... ..|. . ++-+....+++...+.|.+.+
T Consensus 174 saAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~V 251 (330)
T PRK11778 174 CVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFV 251 (330)
T ss_pred HhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99999988654332110 0111 1 122222345667778888889
Q ss_pred HHhhC-CCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCCC
Q 041849 216 SGFTG-RSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPL 259 (293)
Q Consensus 216 a~~tg-~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~~ 259 (293)
++.++ .+. ++..+ +.+|++++|+++||||+|++.++++..
T Consensus 252 a~~R~~l~~---~~va~-G~v~~g~~Al~~GLVD~Ig~~dd~i~~ 292 (330)
T PRK11778 252 QRYRPQLDI---DKVAT-GEHWYGQQALELGLVDEIQTSDDYLLE 292 (330)
T ss_pred HhcCCcCCH---HHHHh-CCCcCHHHHHHCCCCCcCCCHHHHHHH
Confidence 98875 444 34344 567899999999999999999887653
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.76 E-value=6.8e-18 Score=152.13 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=128.7
Q ss_pred ceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCeEEEEccchhhHHHHHhcCCCCC
Q 041849 95 NNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL---VRADVSTVALGMSASTASLILGGGTKG 171 (293)
Q Consensus 95 G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~---~~~pV~tvv~G~AASag~lIl~ag~kg 171 (293)
+..+..+...+++.|..+..++.++.|+|.+|||||.+.+..+|+++|+. .++||++++.+ |+|+|++|+++|++
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 34445667899999999999888999999999999999999999999865 45899999987 99999999999996
Q ss_pred cEEEecceeeeeecccCC------------------CCCCh--------------hHHHHHHHHHHHHHHHHHHHHHHhh
Q 041849 172 KRFAMPNTRVMIHQPMGG------------------ASGQV--------------LDVEIQAREIMHNKDNFTRIISGFT 219 (293)
Q Consensus 172 ~R~a~P~S~imiH~p~~~------------------~~G~~--------------~dl~~~~~el~~~~~~i~~~ya~~t 219 (293)
+|+.|++.+++...... ..|.. .+-+...+.++.+.+.|.+.+++.+
T Consensus 102 -I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 102 -IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred -EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887643211 01111 1111122445567888999999999
Q ss_pred CCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 220 GRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 220 g~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
+++.+.++++.+ +..|++++|++.||||+|+..++++.
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~e~~~ 218 (222)
T cd07018 181 GLSPDALEALID-LGGDSAEEALEAGLVDGLAYRDELEA 218 (222)
T ss_pred CCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHHHHHH
Confidence 999999999877 67889999999999999998776543
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.9e-17 Score=159.09 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=133.7
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---cchhhHHHHHh
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL---GMSASTASLIL 165 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~---G~AASag~lIl 165 (293)
-++.+.|+|++.+++.+.+.|..+++++ ...++|.+|+|||-++++++|.+.|..++.||+.|+. ++|+|||+||+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 4566799999999999999999888654 6899999999999999999999999999999888883 57999999999
Q ss_pred cCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcC
Q 041849 166 GGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245 (293)
Q Consensus 166 ~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~G 245 (293)
++++. .+|.|++.++-.+|..+.....++-. ..+.-..+.+-.++..|++.+..+++..++.-++++||.+.|
T Consensus 108 m~~hi--aaMAPgT~iGaa~Pi~~~g~~~~~~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATHI--AAMAPGTNIGAATPIAGGGTSAKEAN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HhcCh--hhhCCCCcccccceecCCCCCccchh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 99996 89999999999999754422222222 122222445568899999999999999999999999999999
Q ss_pred CceeecCCCC
Q 041849 246 IIDGVIDRDS 255 (293)
Q Consensus 246 LID~I~~~~~ 255 (293)
+||-|..+..
T Consensus 181 vid~iA~~~~ 190 (436)
T COG1030 181 VIDLIARDLN 190 (436)
T ss_pred ccccccCCHH
Confidence 9999987643
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.64 E-value=6e-15 Score=135.69 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=111.5
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCc
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGK 172 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~ 172 (293)
+...||.+.++.+.+.+..... .++|.|.||||||.+.++..|.++|+.+..+++++|...|.|||++|+++|++
T Consensus 68 i~~~I~i~dse~v~raI~~~~~---~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe-- 142 (285)
T PF01972_consen 68 IYRYIDIDDSEFVLRAIREAPK---DKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE-- 142 (285)
T ss_pred cceeEcHhhHHHHHHHHHhcCC---CCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--
Confidence 4567999999999888876543 56899999999999999999999999999999999999999999999999996
Q ss_pred EEEecceeeeeecccCCCCC-----------ChhHHHH--------HHHHHHHHHHHHHHHHHHhhCCCHHHHHHh---h
Q 041849 173 RFAMPNTRVMIHQPMGGASG-----------QVLDVEI--------QAREIMHNKDNFTRIISGFTGRSFEQVQKD---I 230 (293)
Q Consensus 173 R~a~P~S~imiH~p~~~~~G-----------~~~dl~~--------~~~el~~~~~~i~~~ya~~tg~~~e~i~~~---~ 230 (293)
++|.|+|.++--.|..+..- ..+++.+ ..+.+.++++.+.+++..+ .+.++.++. +
T Consensus 143 IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~--~~~eka~~ia~~L 220 (285)
T PF01972_consen 143 IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDK--MDEEKAEEIAEKL 220 (285)
T ss_pred EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHh
Confidence 99999999998888654211 0011110 1133445555556666544 444444433 2
Q ss_pred -----cCCcccCHHHHHHcCC
Q 041849 231 -----DRDRYMSPIEAVEYGI 246 (293)
Q Consensus 231 -----~~~~~lsa~EAle~GL 246 (293)
..|+.++.+||+++||
T Consensus 221 ~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 221 SSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred cCCCCCCCCCCCHHHHHHcCC
Confidence 2477799999999998
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.42 E-value=2.3e-12 Score=131.30 Aligned_cols=155 Identities=9% Similarity=-0.041 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHhhhCCCCCCeEEEEeC-CCCCHHHHHHHHHHHHhc---CCCeEEEEccchhhHHHHHhcCCCCCcEEE
Q 041849 100 FVADAIISQLLLLDAQDPTKDIRLFVNS-PGGSLSATMAIYDVVQLV---RADVSTVALGMSASTASLILGGGTKGKRFA 175 (293)
Q Consensus 100 ~~a~~ii~qL~~l~~~~~~~~I~L~INS-PGGsV~ag~aIyd~I~~~---~~pV~tvv~G~AASag~lIl~ag~kg~R~a 175 (293)
.....++.+|..+..++.+++|+|.+|+ |||.+....+|+++|+.. ++||+++..+ ++|++|||+++|++ +|+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EEE
Confidence 4568999999999999999999999996 678888889999998855 4899998765 47999999999996 999
Q ss_pred ecceeeeeecccCC------------------CCC------------C--hhHHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 041849 176 MPNTRVMIHQPMGG------------------ASG------------Q--VLDVEIQAREIMHNKDNFTRIISGFTGRSF 223 (293)
Q Consensus 176 ~P~S~imiH~p~~~------------------~~G------------~--~~dl~~~~~el~~~~~~i~~~ya~~tg~~~ 223 (293)
.|.+.++++..... ..| . .++-+.....+..+.+.+.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99998866543211 011 1 111121224456677888999999999999
Q ss_pred HHHHHhhcCCcc-------cCHHHHHHcCCceeecCCCCCC
Q 041849 224 EQVQKDIDRDRY-------MSPIEAVEYGIIDGVIDRDSII 257 (293)
Q Consensus 224 e~i~~~~~~~~~-------lsa~EAle~GLID~I~~~~~~~ 257 (293)
+++.+..+.-.| .++++|++.||||+|+..++..
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~ 273 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAG 273 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHH
Confidence 999887764222 2899999999999999877643
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.37 E-value=2.4e-12 Score=109.90 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=82.5
Q ss_pred HHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccC------------C------CCC----------C
Q 041849 142 VQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMG------------G------ASG----------Q 193 (293)
Q Consensus 142 I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~------------~------~~G----------~ 193 (293)
.+..++||++++.++|+|+||+|+++|++ +|+.|.+.++...... | ..| .
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 46778999999999999999999999996 9999998876543221 0 011 1
Q ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCCCC
Q 041849 194 V--LDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 194 ~--~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
. ++-+...+.++.+.+.|.+.+++.+|++.++++++.+. ..|+++||+++||||+|+..++++.
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHHHHHH
Confidence 1 22222235566788889999999999999999998774 8889999999999999998876544
No 34
>PRK10949 protease 4; Provisional
Probab=99.32 E-value=1.9e-11 Score=125.20 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHH-HHHHHHHHhc---CCCeEEEEccchhhHHHHHhcCCCCCcEEE
Q 041849 100 FVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSAT-MAIYDVVQLV---RADVSTVALGMSASTASLILGGGTKGKRFA 175 (293)
Q Consensus 100 ~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag-~aIyd~I~~~---~~pV~tvv~G~AASag~lIl~ag~kg~R~a 175 (293)
-....+++.|..+..++..++|+|.+|||||...+. .+|+++|+.. ++||+++ ...++|++|||+++|++ +|+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~l 171 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IYL 171 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EEE
Confidence 445789999999999999999999999998876554 7899998765 4799986 66778999999999996 999
Q ss_pred ecceeeeeecccCC------------------CCCC------h---hHHHH-----HHHHHHHHHHHHHHHHHHhhCCCH
Q 041849 176 MPNTRVMIHQPMGG------------------ASGQ------V---LDVEI-----QAREIMHNKDNFTRIISGFTGRSF 223 (293)
Q Consensus 176 ~P~S~imiH~p~~~------------------~~G~------~---~dl~~-----~~~el~~~~~~i~~~ya~~tg~~~ 223 (293)
.|.+.++++..... ..|. + +++.. ....+..+.+.+.+.+++.++++.
T Consensus 172 ~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~ 251 (618)
T PRK10949 172 SPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITP 251 (618)
T ss_pred CCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99998876653221 0111 0 11111 123355677788889999999999
Q ss_pred HHHHHhhc----C---CcccCHHHHHHcCCceeecCCCCCCC
Q 041849 224 EQVQKDID----R---DRYMSPIEAVEYGIIDGVIDRDSIIP 258 (293)
Q Consensus 224 e~i~~~~~----~---~~~lsa~EAle~GLID~I~~~~~~~~ 258 (293)
+.+....+ . -..++|++|++.||||+|+..++...
T Consensus 252 ~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~~~ 293 (618)
T PRK10949 252 QQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEK 293 (618)
T ss_pred HHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHHHH
Confidence 98854332 1 12358999999999999998876543
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.99 E-value=1.4e-08 Score=88.49 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=100.2
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHH-----------------HHHHHHHHHHhcCCCeEEEEc
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLS-----------------ATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~-----------------ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.++..+.+.+.+.|..++.++..+.|+|.=+ |.|+++. ....++..|..+++||++.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 4677888999999999887666666666554 5566643 224566667788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|.++|..++++|+. |++.+++.|.+.....|..-.... ... +.+..| .....+++-.++
T Consensus 102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g~-------~~~--------l~~~~g--~~~a~~~~l~g~ 162 (195)
T cd06558 102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGGG-------TQR--------LPRLVG--PARARELLLTGR 162 (195)
T ss_pred CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCcH-------HHH--------HHHHhC--HHHHHHHHHcCC
Confidence 9999999999999996 999999999887665432200000 011 111112 233344455578
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||++.||||++.+.++
T Consensus 163 ~~~a~ea~~~Glv~~~~~~~~ 183 (195)
T cd06558 163 RISAEEALELGLVDEVVPDEE 183 (195)
T ss_pred ccCHHHHHHcCCCCeecChhH
Confidence 899999999999999998743
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.98 E-value=5.4e-09 Score=92.81 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=109.6
Q ss_pred hhccCcEE--EEcceeCHhHHHHHHHHHHHhhhCCCCCCeE-EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhH
Q 041849 84 LLLKERIV--FLGNNIDDFVADAIISQLLLLDAQDPTKDIR-LFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 84 ~l~~~rii--fL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~-L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
..+.+|.. .+++++-+..+......+. .+.+...++ +.+|||||+|..++++...|++.+..+..--..+|+|+
T Consensus 70 ~~~dgr~l~VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~Casa 146 (245)
T COG3904 70 KTLDGRQLPVVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASA 146 (245)
T ss_pred hhccCceeeEEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhcc
Confidence 34455554 4566666555544444443 223344455 78999999999999999999999998888888999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhc----CCcc
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ-VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDID----RDRY 235 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~-~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~----~~~~ 235 (293)
+.+++++|.. |++.+.+.+++||+.....-. .... +++-..+....-...|...+|+...-++.+.+ +-++
T Consensus 147 Cpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~tpp~dir~ 222 (245)
T COG3904 147 CPLMFAGGVR--RVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTARLAAYLREMGIGPGLLQMMLATPPSDIRQ 222 (245)
T ss_pred chhhhhccee--eeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcCChHhhhh
Confidence 9999999986 999999999999998642221 1111 11111111111133466778888876655543 3488
Q ss_pred cCHHHHHHcCCcee
Q 041849 236 MSPIEAVEYGIIDG 249 (293)
Q Consensus 236 lsa~EAle~GLID~ 249 (293)
++.+|..++.|+.+
T Consensus 223 l~~kem~~~~L~t~ 236 (245)
T COG3904 223 LGLKEMTAMKLVTS 236 (245)
T ss_pred hhHHHHhhhccccc
Confidence 99999999998764
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.74 E-value=3.5e-07 Score=82.58 Aligned_cols=141 Identities=15% Similarity=0.198 Sum_probs=96.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH---------------HHHHHHHHhcCCCeEEEEccch
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT---------------MAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag---------------~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 110 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYA 110 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 777888899999998887766665555311 344554321 2456678888999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
..+|..++++||. |++.++++|.+-....|..-..--.. .+.+..| .....+++-.+.+++
T Consensus 111 ~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~ig--~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 111 LGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGDGMA---------------RLTRAAG--PSRAKELVFSGRFFD 171 (222)
T ss_pred ecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCccHHH---------------HHHHHhC--HHHHHHHHHcCCCcC
Confidence 9999999999996 99999998877554433211110000 0111122 223445555578999
Q ss_pred HHHHHHcCCceeecCCCCC
Q 041849 238 PIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 238 a~EAle~GLID~I~~~~~~ 256 (293)
|+||+++||||++...++.
T Consensus 172 a~eA~~~Glv~~vv~~~~l 190 (222)
T PRK05869 172 AEEALALGLIDEMVAPDDV 190 (222)
T ss_pred HHHHHHCCCCCEeeCchHH
Confidence 9999999999999976543
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=3.6e-07 Score=84.98 Aligned_cols=140 Identities=12% Similarity=0.182 Sum_probs=96.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT-------------------MAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~~~pV~tvv 153 (293)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 777888888888888876555554444211 445555431 145667788899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS-GQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~-G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
.|.|..+|.-|+++||. |++.++++|++.....|.. ....-.. .+.+..|. ....+++-.
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~---------------~l~~~vG~--~~a~~l~lt 181 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGACA---------------LLPRIIGQ--GRASELLYT 181 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchHHH---------------HHHHHhCH--HHHHHHHHc
Confidence 99999999999999996 9999999998876654432 1111100 01111122 223445555
Q ss_pred CcccCHHHHHHcCCceeecCCCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+..++|+||+++||||+|...++
T Consensus 182 g~~~~a~eA~~~Glv~~vv~~~~ 204 (277)
T PRK08258 182 GRSMSAEEGERWGFFNRLVEPEE 204 (277)
T ss_pred CCCCCHHHHHHcCCCcEecCHHH
Confidence 68899999999999999987654
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3.5e-07 Score=84.09 Aligned_cols=137 Identities=11% Similarity=0.107 Sum_probs=96.9
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH-----------------HHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT-----------------MAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag-----------------~aIyd~I~~~~~pV~tvv~G 155 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||++.+.|
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (257)
T PRK06495 27 LSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNG 106 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788888999999998887665554444311 344444321 13456677889999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|.-++++||. |++.++++|.+-....|..|...- +.+..| .....+++-.+..
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~~~~g--~~~a~~lll~g~~ 164 (257)
T PRK06495 107 PALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGKH------------------AMRLFG--HSLTRRMMLTGYR 164 (257)
T ss_pred eeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHHH------------------HHHHhC--HHHHHHHHHcCCe
Confidence 999999999999996 999999999876655444321110 111222 3344555556788
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
++++||+++||||+|...++
T Consensus 165 ~~a~eA~~~GLv~~vv~~~~ 184 (257)
T PRK06495 165 VPAAELYRRGVIEACLPPEE 184 (257)
T ss_pred eCHHHHHHcCCcceecCHHH
Confidence 99999999999999987654
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3.5e-07 Score=83.91 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=96.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEE----EeCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEccchh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLF----VNSPGGSLSA--------------TMAIYDVVQLVRADVSTVALGMSA 158 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~----INSPGGsV~a--------------g~aIyd~I~~~~~pV~tvv~G~AA 158 (293)
++.++.+.+.+.+..++.++..+.|+|. .=|.|+++.. ...+++.|..+++||++.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 7888899999999988876656655554 1245555432 234566777889999999999999
Q ss_pred hHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCH
Q 041849 159 STASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSP 238 (293)
Q Consensus 159 Sag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa 238 (293)
.+|..++++||. |++.++++|.+.....|..-...-.. . +.+..| .....+++-.+..+++
T Consensus 109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~-------~--------l~~~~G--~~~a~~l~l~g~~~~a 169 (259)
T PRK06688 109 GVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGGSA-------L--------LPRLIG--RARAAEMLLLGEPLSA 169 (259)
T ss_pred cHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcchhh-------H--------HHHHhh--HHHHHHHHHhCCccCH
Confidence 999999999996 99999999987665443211110000 0 111111 1223344444678999
Q ss_pred HHHHHcCCceeecCCCC
Q 041849 239 IEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 239 ~EAle~GLID~I~~~~~ 255 (293)
+||+++||||+|...++
T Consensus 170 ~eA~~~Glv~~v~~~~~ 186 (259)
T PRK06688 170 EEALRIGLVNRVVPAAE 186 (259)
T ss_pred HHHHHcCCcceecCHHH
Confidence 99999999999987644
No 41
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=4.1e-07 Score=83.66 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=95.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|.|+++... ..++..|..+++||++.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 106 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVE 106 (260)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 78888899999998888766555444421 1344554321 2345567788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|..|+++||. |++.++++|.+.....|..-...- . . .+.+.. ......+++-.+.
T Consensus 107 G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~---~----~--------~l~~~v--g~~~a~~l~ltg~ 167 (260)
T PRK07511 107 GAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGGG---S----W--------FLARAL--PRQLATELLLEGK 167 (260)
T ss_pred CeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCchH---H----H--------HHHHHh--CHHHHHHHHHhCC
Confidence 9999999999999996 999999999876554432211100 0 0 011111 2333455555578
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||++.||||+|.+.++
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~~ 188 (260)
T PRK07511 168 PISAERLHALGVVNRLAEPGQ 188 (260)
T ss_pred CCCHHHHHHcCCccEeeCchH
Confidence 899999999999999997654
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.68 E-value=5e-07 Score=83.23 Aligned_cols=140 Identities=15% Similarity=0.067 Sum_probs=94.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEE-----EeCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEccch
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLF-----VNSPGGSLSA--------------TMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~-----INSPGGsV~a--------------g~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++..+.+.+.+.|..++.++.++.|+|. .=|.|+++.. ...++..|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYA 105 (261)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCee
Confidence 7777888898998888876555555553 1255566542 12345667888999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
..+|.-++++||. |++.++++|.+-....|.. -+.... .. +.+..| .....+++-.+..++
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~g~~----~~--------l~~~vg--~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 106 FGGGFELALAADF--IVCADNASFALPEAKLGIV---PDSGGV----LR--------LPKRLP--PAIANEMVMTGRRMD 166 (261)
T ss_pred ehHHHHHHHHCCE--EEecCCCEEeCcccccCcC---CCccHH----HH--------HHHHhC--HHHHHHHHHhCCccC
Confidence 9999999999996 9999999887644333321 111100 00 111112 233445544577899
Q ss_pred HHHHHHcCCceeecCCCC
Q 041849 238 PIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 238 a~EAle~GLID~I~~~~~ 255 (293)
++||+++||||+|...++
T Consensus 167 a~eA~~~Glv~~vv~~~~ 184 (261)
T PRK03580 167 AEEALRWGIVNRVVPQAE 184 (261)
T ss_pred HHHHHHcCCCcEecCHhH
Confidence 999999999999988654
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=7.4e-07 Score=82.03 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=96.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE-----eCCCCCHHH---------------HHHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV-----NSPGGSLSA---------------TMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-----NSPGGsV~a---------------g~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 78888999999999888766555555532 134555432 1235566778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-++++||. |++.++++|.+-....|. +.... . ..+.+..|. ....+++-.+..+
T Consensus 111 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~~-~------------~~l~~~iG~--~~a~~l~l~g~~~ 170 (256)
T PRK06143 111 CLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVIH-A------------ALLPRLIGW--ARTRWLLLTGETI 170 (256)
T ss_pred EeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCccH-H------------HHHHHhcCH--HHHHHHHHcCCcC
Confidence 99999999999996 999999998764443332 11110 0 012222332 3345555567889
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+|+||+++||||+|.+.++
T Consensus 171 ~a~eA~~~Glv~~vv~~~~ 189 (256)
T PRK06143 171 DAAQALAWGLVDRVVPLAE 189 (256)
T ss_pred CHHHHHHCCCcCeecCHHH
Confidence 9999999999999998654
No 44
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.62 E-value=5.6e-07 Score=81.74 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=96.3
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCC------CCCH---------------HHHHHHHHHHHhcCCCeEEEEc
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFVNSP------GGSL---------------SATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSP------GGsV---------------~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.++.++.+.+...|..++.++..+ .|.+.+. |+++ .....++..|..+++||++.+.
T Consensus 21 ~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 21 ALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp EBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 478889999999999999877666 3334433 4444 3334667778899999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|..++++||. |++.+++.|.+.....|..-...-... +.+..|. ....+++-.+.
T Consensus 99 G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~---------------l~r~~g~--~~a~~l~l~g~ 159 (245)
T PF00378_consen 99 GHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTFR---------------LPRLIGP--SRARELLLTGE 159 (245)
T ss_dssp SEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHHH---------------HHHHHHH--HHHHHHHHHTC
T ss_pred ccccccccccccccce--EEeecccceeeeecccCcccccccccc---------------cceeeec--ccccccccccc
Confidence 9999999999999996 999999998766554332211111110 1111111 12233333467
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++|+||+++||||+|...++
T Consensus 160 ~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 160 PISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp EEEHHHHHHTTSSSEEESGGG
T ss_pred cchhHHHHhhcceeEEcCchh
Confidence 889999999999999998765
No 45
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.62 E-value=7e-07 Score=82.40 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=94.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe------CCCCCHHHH--------------HHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN------SPGGSLSAT--------------MAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN------SPGGsV~ag--------------~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++..+.+.+.+.+..++.++ ++.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 78888899999998887654 555554321 445555321 235566788899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-|+++||. |++.++++|.+-....|..-...-.. .+.+..| .....+++-.+..+
T Consensus 107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g~~~---------------~l~~~vg--~~~a~~l~l~g~~~ 167 (261)
T PRK11423 107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLSGIL---------------NFTNDAG--FHIVKEMFFTASPI 167 (261)
T ss_pred EechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCccHHH---------------HHHHHhH--HHHHHHHHHcCCCc
Confidence 99999999999996 99999998876544333210000010 1111112 23344555557889
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+|+||+++||||+|...++
T Consensus 168 ~a~eA~~~GLv~~vv~~~~ 186 (261)
T PRK11423 168 TAQRALAVGILNHVVEVEE 186 (261)
T ss_pred CHHHHHHcCCcCcccCHHH
Confidence 9999999999999988654
No 46
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=1.3e-06 Score=80.62 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=97.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA-------------TMAIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a-------------g~aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788889999999998887665655555321 55666543 1245667889999999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.+++.|.+-....|. .-+.... . .+.+..| .....+++-.+..++|+
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~--------~l~r~vG--~~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHARVGI---LPGWGLS----V--------RLPQKVG--IGRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccccCc---CCCccHH----H--------HHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999996 999999998754433221 1111000 0 1111222 33444555567889999
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
||+++||||++...++
T Consensus 169 eA~~~GLv~~vv~~~~ 184 (258)
T PRK06190 169 DALRAGLVTEVVPHDE 184 (258)
T ss_pred HHHHcCCCeEecCHhH
Confidence 9999999999987654
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=6.9e-07 Score=82.67 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=94.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH-------------------------HHHHHHHHhcCC
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT-------------------------MAIYDVVQLVRA 147 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag-------------------------~aIyd~I~~~~~ 147 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 109 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRK 109 (272)
T ss_pred CCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCC
Confidence 788888999999988876554544444311 234554321 122456778899
Q ss_pred CeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 041849 148 DVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQ 227 (293)
Q Consensus 148 pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~ 227 (293)
||++.+.|.|..+|.-|+++||. |++.++++|.+.....|..- +..... . +.+.. ......
T Consensus 110 PvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~~~----~--------l~~~i--g~~~a~ 170 (272)
T PRK06210 110 PVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIA---EHGISW----I--------LPRLV--GHANAL 170 (272)
T ss_pred CEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCC---CCchhh----h--------hHhhh--CHHHHH
Confidence 99999999999999999999996 99999999987665433210 100000 0 00111 233455
Q ss_pred HhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 228 KDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 228 ~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+++-.+..++|+||+++||||+|...++
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 6555678889999999999999987654
No 48
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=1.1e-06 Score=80.67 Aligned_cols=140 Identities=13% Similarity=0.183 Sum_probs=95.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHH----------------HHHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSA----------------TMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++.++.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...++..|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 77788889988988888766555555532 144566532 1235566778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-++++||. |++.++++|.+-....|.. -+.... .. +.+..| .....+++-.+..+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~vG--~~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGLI---PGFAGT----QR--------LPRYVG--KAKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCCC---CCCcHH----HH--------HHHHhC--HHHHHHHHHcCCCc
Confidence 99999999999996 9999999887654433321 111100 00 111122 22334555557889
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 166 ~a~eA~~~Glv~~vv~~~~ 184 (257)
T PRK07658 166 TGAEALKWGLVNGVFPEET 184 (257)
T ss_pred CHHHHHHcCCcCeecChhH
Confidence 9999999999999987654
No 49
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=1e-06 Score=81.22 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=93.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCC-CCCeEEEEe----CCCCCHHH--------------H-------HHHHHHHHhcCCCeE
Q 041849 97 IDDFVADAIISQLLLLDAQDP-TKDIRLFVN----SPGGSLSA--------------T-------MAIYDVVQLVRADVS 150 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~-~~~I~L~IN----SPGGsV~a--------------g-------~aIyd~I~~~~~pV~ 150 (293)
++.++.+.+.+.|..++.++. .+.|+|.=. |-|+++.. + ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 788888999999988875433 444444321 34455432 1 134566788899999
Q ss_pred EEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 041849 151 TVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDI 230 (293)
Q Consensus 151 tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~ 230 (293)
+.+.|.|..+|.-++++||. |++.+++.|.+..+..|..- +.... ..+ .+..| .....+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p---~~g~~----~~l--------~~~vg--~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVP---DGGST----WLL--------PRLVG--KARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCC---CccHH----HHH--------HHHhH--HHHHHHHH
Confidence 99999999999999999996 99999999887665433211 11000 001 11111 12234444
Q ss_pred cCCcccCHHHHHHcCCceeecCCCC
Q 041849 231 DRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 231 ~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
-.++.|+++||+++||||+|...++
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCHhH
Confidence 4567899999999999999998654
No 50
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=1.7e-06 Score=79.68 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=93.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSA---------------TMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~a---------------g~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++.++.+.+...+..++.++.++.|+|.=. |.|+++.. ...++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 777888888888888887655554544321 33455432 1234566778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-++++||. |++.++++|.+-....|.. -+.... . .+.+..|. ....+++-.+..+
T Consensus 106 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~iG~--~~a~~l~l~g~~~ 166 (258)
T PRK09076 106 AMGGGLECALACDI--RIAEEQAQMALPEASVGLL---PCAGGT----Q--------NLPWLVGE--GWAKRMILCGERV 166 (258)
T ss_pred EecHHHHHHHhCCE--EEecCCCEeeCcccccCCC---CCccHH----H--------HHHHHhCH--HHHHHHHHcCCcC
Confidence 99999999999996 9999999987654433321 110000 0 01111222 2233444456788
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 167 ~a~eA~~~Glv~~vv~~~~ 185 (258)
T PRK09076 167 DAATALRIGLVEEVVEKGE 185 (258)
T ss_pred CHHHHHHCCCCceecCchh
Confidence 9999999999999998764
No 51
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.58 E-value=1.7e-06 Score=79.32 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=97.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEccchhhH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------MAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++..|..+++||++.+.|.|..+
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence 778888899898888887655555555311 445665431 2566778899999999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHH
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~E 240 (293)
|..++++||. |++.+++.|.+.....|.. ..... .. .+.+..| .....+++-.+..++++|
T Consensus 109 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~--------~l~~~~g--~~~a~~llltg~~~~a~e 169 (249)
T PRK07110 109 GLVLGLYADI--VVLSRESVYTANFMKYGFT---PGMGA----TA--------ILPEKLG--LALGQEMLLTARYYRGAE 169 (249)
T ss_pred HHHHHHhCCE--EEEeCCCEecCchhccCCC---CCchH----HH--------HHHHHhC--HHHHHHHHHcCCccCHHH
Confidence 9999999996 9999999887654433321 11110 00 1111222 334556666678899999
Q ss_pred HHHcCCceeecCCCC
Q 041849 241 AVEYGIIDGVIDRDS 255 (293)
Q Consensus 241 Ale~GLID~I~~~~~ 255 (293)
|+++||||+|.+.++
T Consensus 170 A~~~Glv~~vv~~~~ 184 (249)
T PRK07110 170 LKKRGVPFPVLPRAE 184 (249)
T ss_pred HHHcCCCeEEeChHH
Confidence 999999999997654
No 52
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.57 E-value=9.5e-07 Score=81.13 Aligned_cols=140 Identities=9% Similarity=0.055 Sum_probs=96.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSA-------------TMAIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~a-------------g~aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
++..+.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 78888899999998888766555555421 145565532 1235666788999999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.++++|.+.....|.. .+.... ..+.+..| .....+++-.+..|+++
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~ig--~~~a~~l~l~g~~~~a~ 166 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLGIM---PGAGGT------------QRLIRSVG--KSLASQMVLTGESITAQ 166 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcCCC---CCccHH------------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999996 9999999987765543321 111000 01112223 23344555557889999
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
||+++||||+|...++
T Consensus 167 eA~~~Glv~~vv~~~~ 182 (255)
T PRK09674 167 QAQQAGLVSEVFPPEL 182 (255)
T ss_pred HHHHcCCCcEecChHH
Confidence 9999999999987654
No 53
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=1.1e-06 Score=80.87 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=94.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT-------------------MAIYDVVQLVRADVSTV 152 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag-------------------~aIyd~I~~~~~pV~tv 152 (293)
++.++.+.+.+.|..++.++.++.|+|.=+ |-|+++... ..+++.|..+++||++.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888999999988887665555555321 334554320 12455677889999999
Q ss_pred EccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 153 v~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
+.|.|..+|.-++++||. |++.++++|++-....|.. -..... . .+.+..| .....+++-.
T Consensus 107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG--~~~a~~l~l~ 167 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMP---PTFGGT----Q--------RLPRLAG--RKRALELLLT 167 (260)
T ss_pred EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCC---CCchHh----h--------HHHhhcC--HHHHHHHHHc
Confidence 999999999999999996 9999999887644433321 111000 0 1111122 2234455555
Q ss_pred CcccCHHHHHHcCCceeecCCCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+..++++||+++||||+|...++
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 168 GDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred CCccCHHHHHHcCCCCcccCHHH
Confidence 78899999999999999987654
No 54
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.57 E-value=1.1e-06 Score=80.92 Aligned_cols=138 Identities=12% Similarity=0.142 Sum_probs=93.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG-------GSLSA---------------TMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG-------GsV~a---------------g~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.+..++.++.++.|+| .+.| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 778888888888888876655544443 3433 44321 12456678888999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-++++||. |++.++++|++.....|.. .++... . .+.+..|. ....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGIT---PGFGGT----Q--------RLARIVGP--GKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCC---CCccHH----H--------HHHHHhCH--HHHHHHHHhCC
Confidence 9999999999999996 9999999988755443322 111100 0 01111221 23445555567
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEPEK 187 (260)
T ss_pred CCCHHHHHHcCCCCcccChHH
Confidence 889999999999999987654
No 55
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=2.2e-06 Score=78.90 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=92.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEccch
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA---------------TMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a---------------g~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++.++.+.+.+.|..++ +..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788888888888776 33554444322 33455532 12345667788999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
..+|.-++++||. |++.++++|++-....|.. -...... . +.+..| .....+++-.+..|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~----~--------l~~~iG--~~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRGIF---VGGGGSV----R--------VPRLIG--VARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccCCC---CCccHHH----H--------HHHHhC--HHHHHHHHHcCCcCC
Confidence 9999999999996 9999999887644433321 1110000 0 111122 223344454567899
Q ss_pred HHHHHHcCCceeecCCCCC
Q 041849 238 PIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 238 a~EAle~GLID~I~~~~~~ 256 (293)
++||+++||||+|...++.
T Consensus 165 a~eA~~~Glv~~vv~~~~l 183 (255)
T PRK08150 165 AQEGERLGLAQYLVPAGEA 183 (255)
T ss_pred HHHHHHcCCccEeeCchHH
Confidence 9999999999999987653
No 56
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1.3e-06 Score=82.08 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=95.2
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH--------------------------------HHHH
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT--------------------------------MAIY 139 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag--------------------------------~aIy 139 (293)
.++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++
T Consensus 27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (296)
T PRK08260 27 AFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVT 106 (296)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 3788888899999988876655554444211 444554321 1245
Q ss_pred HHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041849 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFT 219 (293)
Q Consensus 140 d~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~t 219 (293)
..|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+.....|.. -+..... . +.+..
T Consensus 107 ~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~----~--------l~r~v 169 (296)
T PRK08260 107 LRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIV---PEAASSW----F--------LPRLV 169 (296)
T ss_pred HHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcC---CCcchhh----h--------HHHhh
Confidence 6677889999999999999999999999996 9999999998765543321 1110000 0 11111
Q ss_pred CCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 220 GRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 220 g~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
| .....+++-.+..++++||+++||||+|...++
T Consensus 170 G--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~ 203 (296)
T PRK08260 170 G--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPDE 203 (296)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHCCCceeecCHHH
Confidence 2 233445555577899999999999999987654
No 57
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.55 E-value=1e-06 Score=80.98 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=95.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE-----eCCCCCHHHH--------------HHHHHHHHhcCCCeEEEEccch
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV-----NSPGGSLSAT--------------MAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-----NSPGGsV~ag--------------~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++.++.+.+.+.|..++.++.++.|+|.= =|.||++... ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788888988888887766555555532 1445665431 2355678888999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
..+|.-++++||. |++.++++|.+-.+..|.. +...... .+.+..|. ....+++-.+..++
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~~~-------------~l~~~vG~--~~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYGTA-------------LLARVVGE--KKAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccHHH-------------HHHHHhCH--HHHHHHHHhCCCcC
Confidence 9999999999996 9999999987754433311 0100000 11222222 22334444467899
Q ss_pred HHHHHHcCCceeecCCCC
Q 041849 238 PIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 238 a~EAle~GLID~I~~~~~ 255 (293)
|+||+++||||+|...++
T Consensus 167 a~eA~~~Glv~~vv~~~~ 184 (256)
T TIGR03210 167 AQEALAMGLVNAVVPHDQ 184 (256)
T ss_pred HHHHHHcCCceeeeCHHH
Confidence 999999999999987654
No 58
>PLN02600 enoyl-CoA hydratase
Probab=98.55 E-value=1.9e-06 Score=79.09 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=94.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH---------------HHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT---------------MAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag---------------~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++..+.+.+.+.+..++.++.++.|+|.=. |.|+++... ..++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 788888999999988887665555555311 445655421 123455778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-++++||. |++.++++|++-....|. ..+.... .. +.+..| .....+++-.+..|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~~--------l~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGLAI---IPGAGGT----QR--------LPRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccccCc---CCCchHH----HH--------HHHHhC--HHHHHHHHHhCCcc
Confidence 99999999999996 999999998774433222 1111100 00 111112 22334555456789
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 160 ~a~eA~~~Glv~~vv~~~~ 178 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGE 178 (251)
T ss_pred CHHHHHHcCCCcEeeChhH
Confidence 9999999999999988665
No 59
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.54 E-value=1.5e-06 Score=80.06 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=93.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSA----------------TMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~G 155 (293)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 777788888888888876655554444221 33455421 113556778889999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|.-|+++||. |++.++++|++-....|..-..--.. . +.+..| .....+++-.+..
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~~~~-------~--------l~~~vG--~~~a~~l~l~g~~ 167 (259)
T TIGR01929 107 YAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGYGSS-------Y--------LARIVG--QKKAREIWFLCRQ 167 (259)
T ss_pred EEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCccHHH-------H--------HHHHhH--HHHHHHHHHhCCc
Confidence 999999999999996 99999999987665443210000000 0 111111 1233445555678
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
++++||+++||||+|...++
T Consensus 168 ~~a~eA~~~Glv~~vv~~~~ 187 (259)
T TIGR01929 168 YDAEQALDMGLVNTVVPLAD 187 (259)
T ss_pred cCHHHHHHcCCcccccCHHH
Confidence 99999999999999988654
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.8e-06 Score=79.43 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEE----EeCCCCCHHHH----------------------HHHHHHHHhcCCCe
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLF----VNSPGGSLSAT----------------------MAIYDVVQLVRADV 149 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~----INSPGGsV~ag----------------------~aIyd~I~~~~~pV 149 (293)
.++..+.+.+.+.|..++.++.++.|+|. .=|.|+++... ..++..|+.+++||
T Consensus 26 al~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv 105 (262)
T PRK07509 26 ALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPV 105 (262)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCE
Confidence 37888889999999988876655544442 11445554321 11334467889999
Q ss_pred EEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHh
Q 041849 150 STVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKD 229 (293)
Q Consensus 150 ~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~ 229 (293)
++.+.|.|..+|.-++++||. |++.+++.|.+.....|.. -+.... . .+.+..| .....++
T Consensus 106 Iaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~~g--~~~a~~l 166 (262)
T PRK07509 106 IAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLV---PDMAGT----V--------SLRGLVR--KDVAREL 166 (262)
T ss_pred EEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCC---CCchHH----H--------HHHHHhC--HHHHHHH
Confidence 999999999999999999996 9999999988765543321 111000 0 1111122 2334555
Q ss_pred hcCCcccCHHHHHHcCCceeecC
Q 041849 230 IDRDRYMSPIEAVEYGIIDGVID 252 (293)
Q Consensus 230 ~~~~~~lsa~EAle~GLID~I~~ 252 (293)
+-.++.++++||+++||||+|.+
T Consensus 167 ~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 167 TYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HHcCCCcCHHHHHHcCChhhhhc
Confidence 55678899999999999999975
No 61
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.5e-06 Score=79.63 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=95.3
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEccch
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSA--------------TMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~a--------------g~aIyd~I~~~~~pV~tvv~G~A 157 (293)
.++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.|
T Consensus 29 al~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 108 (251)
T PRK06023 29 AITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLA 108 (251)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCce
Confidence 378888899999999888765555554421 144455432 12455678888999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccC
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ls 237 (293)
..+|.-++++||. |++.++++|.+.....|.. .+..... .+.+..| .....+++-.++.++
T Consensus 109 ~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~~g--~~~a~~l~l~g~~~~ 169 (251)
T PRK06023 109 IGIGTTIHLHCDL--TFASPRSLFRTPFVDLALV---PEAGSSL------------LAPRLMG--HQRAFALLALGEGFS 169 (251)
T ss_pred ecHHHHHHHhCCE--EEEeCCCEecCcccccCCC---CCchHHH------------HHHHHHh--HHHHHHHHHhCCCCC
Confidence 9999999999996 9999999998655443321 1110000 0111112 223344444567899
Q ss_pred HHHHHHcCCceeecCCCC
Q 041849 238 PIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 238 a~EAle~GLID~I~~~~~ 255 (293)
++||+++||||+|...++
T Consensus 170 a~eA~~~Glv~~vv~~~~ 187 (251)
T PRK06023 170 AEAAQEAGLIWKIVDEEA 187 (251)
T ss_pred HHHHHHcCCcceeeCHHH
Confidence 999999999999987654
No 62
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.4e-06 Score=80.31 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=94.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSA-------------TMAIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~a-------------g~aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 78888899999998888765555555431 144555432 1235566778899999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.++++|.+-....|.. -+..... .+.+..| .....+++-.+..++++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~vG--~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGLM---PGAGGTQ------------RLVRAVG--KFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCcccccccC---CCCcHHH------------HHHHHhC--HHHHHHHHHcCCCCCHH
Confidence 99999999996 9999999887644433321 1110000 1112222 22344455556789999
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
||+++||||+|...++
T Consensus 173 eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 173 EALAIGLVSEVVEDEQ 188 (261)
T ss_pred HHHHCCCCcEecCchH
Confidence 9999999999987654
No 63
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.54 E-value=2.6e-06 Score=78.29 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=94.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEccchhhH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------MAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 788888999999998887665554444321 445554321 1345567788999999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHH
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~E 240 (293)
|.-|+++||- |++.++++|.+-....|... . .... .+.+..| .....+++-.+..++++|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p--~-~~~~-------------~l~~~vg--~~~a~~l~ltg~~~~a~e 163 (251)
T TIGR03189 104 GLEVAAAGNL--MFAAPDAKLGQPEIVLGVFA--P-AASC-------------LLPERMG--RVAAEDLLYSGRSIDGAE 163 (251)
T ss_pred HHHHHHhCCE--EEEcCCCEEeCchhhcCCCC--C-chHH-------------HHHHHhC--HHHHHHHHHcCCCCCHHH
Confidence 9999999996 99999998877544333221 1 1100 1122223 233455555567899999
Q ss_pred HHHcCCceeecCC
Q 041849 241 AVEYGIIDGVIDR 253 (293)
Q Consensus 241 Ale~GLID~I~~~ 253 (293)
|+++||||+|.+.
T Consensus 164 A~~~Glv~~v~~~ 176 (251)
T TIGR03189 164 GARIGLANAVAED 176 (251)
T ss_pred HHHCCCcceecCc
Confidence 9999999999864
No 64
>PLN02921 naphthoate synthase
Probab=98.54 E-value=1.5e-06 Score=83.03 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=96.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH----------------HHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT----------------MAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag----------------~aIyd~I~~~~~pV~tvv~G 155 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |.||++... ..++..|+.+++||++.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788899999999998887655544443311 445655321 12455678889999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|..|+++||. |++.+++.|++..+..|.... ..... .+.+..| .....+++-.++.
T Consensus 171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~--~gg~~-------------~L~rliG--~~~A~ellltG~~ 231 (327)
T PLN02921 171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDA--GYGSS-------------IMARLVG--QKKAREMWFLARF 231 (327)
T ss_pred EEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCC--ccHHH-------------HHHHHhC--HHHHHHHHHcCCc
Confidence 999999999999996 999999999887665442210 00000 0111122 2334455555788
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
|+|+||+++||||+|...++
T Consensus 232 ~~A~eA~~~GLV~~vv~~~~ 251 (327)
T PLN02921 232 YTASEALKMGLVNTVVPLDE 251 (327)
T ss_pred CCHHHHHHCCCceEEeCHHH
Confidence 99999999999999997654
No 65
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.53 E-value=1.9e-06 Score=80.01 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=92.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH--------------------------HHHHHHHHhcC
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT--------------------------MAIYDVVQLVR 146 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag--------------------------~aIyd~I~~~~ 146 (293)
++.++.+.+.+.|..++.++.++.|+|.= =|-|+++... ..+++.|..++
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCR 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888899999999888765555443321 1334554321 12455677889
Q ss_pred CCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 041849 147 ADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQV 226 (293)
Q Consensus 147 ~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i 226 (293)
+||++.+.|.|..+|.-|+++||- |++.++++|.+-....|..- +.... .. +.+..| ....
T Consensus 112 kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~~----~~--------l~~~vG--~~~A 172 (275)
T PLN02664 112 KPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITA---DLGTL----QR--------LPSIVG--YGNA 172 (275)
T ss_pred CCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCC---CccHH----HH--------HHHHhC--HHHH
Confidence 999999999999999999999996 99999999876544333211 11100 00 111122 2233
Q ss_pred HHhhcCCcccCHHHHHHcCCceeecCC
Q 041849 227 QKDIDRDRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 227 ~~~~~~~~~lsa~EAle~GLID~I~~~ 253 (293)
.+++-.+..|+++||+++||||+|...
T Consensus 173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 173 MELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 455545788899999999999999874
No 66
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=1.6e-06 Score=80.55 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=94.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH----------------------HHHHHHHHhcCCCeE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT----------------------MAIYDVVQLVRADVS 150 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag----------------------~aIyd~I~~~~~pV~ 150 (293)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..+++.|..+++||+
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 78888889999998888765555555532 1455655421 124456778899999
Q ss_pred EEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 041849 151 TVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDI 230 (293)
Q Consensus 151 tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~ 230 (293)
+.+.|.|..+|.-++++||. |++.+++.|.+-....|..- .+.... ..+.+..| .....+++
T Consensus 114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~------------~~l~~~vG--~~~A~~l~ 175 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS------------YLLPRAIG--SSRAFEIM 175 (276)
T ss_pred EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh------------eehHhhhC--HHHHHHHH
Confidence 99999999999999999996 99999998876444332210 011100 01112223 22344444
Q ss_pred cCCcccCHHHHHHcCCceeecCCCC
Q 041849 231 DRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 231 ~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
-.+..++|+||+++||||+|...++
T Consensus 176 l~g~~~~a~eA~~~Glv~~vv~~~~ 200 (276)
T PRK05864 176 LTGRDVDAEEAERIGLVSRQVPDEQ 200 (276)
T ss_pred HcCCccCHHHHHHcCCcceeeCHHH
Confidence 4467789999999999999987654
No 67
>PLN02888 enoyl-CoA hydratase
Probab=98.52 E-value=2.4e-06 Score=79.04 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEccchhhH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------MAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
++.++...+.+.|..++.++..+.|+|.=. |-|+++... ..++..|..+++||++.+.|.|..+
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 788888999999998887665555554311 334565421 2344567788999999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHH
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~E 240 (293)
|..++++||. |++.+++.|.+-....|.. -..... ..+.+..| .....+++-.+..++++|
T Consensus 114 G~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG--~~~a~~l~ltg~~~~a~e 174 (265)
T PLN02888 114 GFEIALACDI--LVASRGAKFIDTHAKFGIF---PSWGLS------------QKLSRIIG--ANRAREVSLTAMPLTAET 174 (265)
T ss_pred HHHHHHhCCE--EEecCCCEecCccccccCC---CCccHh------------hHHHHHhC--HHHHHHHHHhCCccCHHH
Confidence 9999999996 9999999887643332221 111000 01111222 223344444567889999
Q ss_pred HHHcCCceeecCCCC
Q 041849 241 AVEYGIIDGVIDRDS 255 (293)
Q Consensus 241 Ale~GLID~I~~~~~ 255 (293)
|+++||||+|...++
T Consensus 175 A~~~Glv~~vv~~~~ 189 (265)
T PLN02888 175 AERWGLVNHVVEESE 189 (265)
T ss_pred HHHcCCccEeeChHH
Confidence 999999999997654
No 68
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.8e-06 Score=79.07 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=94.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH----------------HHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT----------------MAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag----------------~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++.++.+.+.+.|..++.++.++.|+|.= =|-|+++..- ..+++.|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67778888888888887666555444431 1445665431 124456778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-|+++||. |++.++++|.+-....|..|... .+.+..| .....+++-.+..+
T Consensus 105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~------------------~l~~~vg--~~~a~~l~ltg~~~ 162 (249)
T PRK07938 105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAAT------------------HLQRLVP--QHLMRALFFTAATI 162 (249)
T ss_pred EeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHH------------------HHHHhcC--HHHHHHHHHhCCcC
Confidence 99999999999996 99999999876544333322110 0111222 23345555557889
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 163 ~a~eA~~~Glv~~vv~~~~ 181 (249)
T PRK07938 163 TAAELHHFGSVEEVVPRDQ 181 (249)
T ss_pred CHHHHHHCCCccEEeCHHH
Confidence 9999999999999998654
No 69
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.7e-06 Score=79.77 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=91.7
Q ss_pred eCH-hHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH----------------------HHHHHHHHhcCCCe
Q 041849 97 IDD-FVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT----------------------MAIYDVVQLVRADV 149 (293)
Q Consensus 97 Id~-~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag----------------------~aIyd~I~~~~~pV 149 (293)
++. .+.+.+.+.+..++.++.++.|+|.=+ |-|+++... ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 554 677888888888876655555554321 445554321 12445677889999
Q ss_pred EEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHh
Q 041849 150 STVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKD 229 (293)
Q Consensus 150 ~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~ 229 (293)
++.+.|.|..+|.-|+++||- |++.+++.|++.....|..-...-.. .+.+..| .....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~~~vG--~~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGGAW---------------LLPRIIG--MARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcchhh---------------hHHHHhh--HHHHHHH
Confidence 999999999999999999996 99999999876555433211100000 0111111 1223444
Q ss_pred hcCCcccCHHHHHHcCCceeecCCCC
Q 041849 230 IDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 230 ~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+-.+..|+++||+++||||+|...++
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPADQ 193 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCHHH
Confidence 54567899999999999999987654
No 70
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.1e-06 Score=78.43 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=91.3
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEE----EeCCCCCHHH----------HHHHHHHHHhcCCCeEEEEccchhhHH
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLF----VNSPGGSLSA----------TMAIYDVVQLVRADVSTVALGMSASTA 161 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~----INSPGGsV~a----------g~aIyd~I~~~~~pV~tvv~G~AASag 161 (293)
.++..+.+.+.+.+..++. +..+.|+|. .=|-|+++.. ...++..|..+++||++.+.|.|..+|
T Consensus 23 al~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 23 ALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAG 101 (243)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccH
Confidence 3788888899888888774 334434432 1134455431 134566778889999999999999999
Q ss_pred HHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 162 SLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 162 ~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
.-++++||- |++.++++|.+-....|. .-+... . ..+.+..| .....+++-.+..++++||
T Consensus 102 ~~lal~cD~--~ia~~~a~f~~pe~~~G~---~p~~g~----~--------~~l~~~~G--~~~a~~l~ltg~~~~a~eA 162 (243)
T PRK07854 102 LQLAMACDL--RVVAPEAYFQFPVAKYGI---ALDNWT----I--------RRLSSLVG--GGRARAMLLGAEKLTAEQA 162 (243)
T ss_pred HHHHHhCCE--EEEcCCCEEecccccccc---CCCccH----H--------HHHHHHhC--HHHHHHHHHcCCCcCHHHH
Confidence 999999996 999999998753333222 111100 0 01222223 2234455555788999999
Q ss_pred HHcCCceeecCC
Q 041849 242 VEYGIIDGVIDR 253 (293)
Q Consensus 242 le~GLID~I~~~ 253 (293)
+++||||+|.+.
T Consensus 163 ~~~Glv~~v~~~ 174 (243)
T PRK07854 163 LATGMANRIGTL 174 (243)
T ss_pred HHCCCcccccCH
Confidence 999999999653
No 71
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.51 E-value=3.5e-06 Score=77.99 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=94.3
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH----------------HHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT----------------MAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag----------------~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++.++.+.+.+.|..++.++.++.|+|.=+ |-|+++... ..++..|..+++||++.+.|.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 778888899888888876554544444211 334544311 124556778899999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|.-++++||- |++.++++|.+-....|....... . .+.+..| .....+++-.++.+
T Consensus 115 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~---~-------------~l~r~vG--~~~A~~l~ltg~~~ 174 (266)
T PRK08139 115 ATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPM---V-------------ALSRNVP--RKQAMEMLLTGEFI 174 (266)
T ss_pred eeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccH---H-------------HHHHHhC--HHHHHHHHHcCCcc
Confidence 99999999999996 999999998776554443211110 0 0111122 23345555557888
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 175 ~a~eA~~~GLv~~vv~~~~ 193 (266)
T PRK08139 175 DAATAREWGLVNRVVPADA 193 (266)
T ss_pred CHHHHHHcCCccEeeChhH
Confidence 9999999999999997654
No 72
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.51 E-value=1.9e-06 Score=80.04 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=95.5
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-----eCCCCCHHHH----------------HHHHHHHHhcCCCeEEEEc
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFV-----NSPGGSLSAT----------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-----NSPGGsV~ag----------------~aIyd~I~~~~~pV~tvv~ 154 (293)
.++.++.+.+.+.|..++.++.++.|+|.= =|.|+++... ..+++.|..+++||++.+.
T Consensus 36 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 115 (273)
T PRK07396 36 AFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVA 115 (273)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEEC
Confidence 378888899999999888766555555532 1345554320 1245567888999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||. |++.++++|.+-.+..|..-..--.. .+.+..| .....+++-.+.
T Consensus 116 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~~---------------~l~~~vG--~~~a~~l~ltg~ 176 (273)
T PRK07396 116 GYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGYGAS---------------YLARIVG--QKKAREIWFLCR 176 (273)
T ss_pred CEEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCchHHH---------------HHHHHhh--HHHHHHHHHhCC
Confidence 9999999999999996 99999999887555433210000000 0111122 223445555577
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.|+|+||+++||||+|...++
T Consensus 177 ~~~A~eA~~~GLv~~vv~~~~ 197 (273)
T PRK07396 177 QYDAQEALDMGLVNTVVPLAD 197 (273)
T ss_pred CcCHHHHHHcCCcCeecCHHH
Confidence 899999999999999987654
No 73
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.7e-06 Score=78.82 Aligned_cols=138 Identities=18% Similarity=0.176 Sum_probs=92.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH--------------------------HHHHHHHHhcC
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT--------------------------MAIYDVVQLVR 146 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag--------------------------~aIyd~I~~~~ 146 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |-|+++..- ..+++.|..++
T Consensus 30 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCR 109 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCC
Confidence 888888999999988876554444444321 333554321 23445577889
Q ss_pred CCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 041849 147 ADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQV 226 (293)
Q Consensus 147 ~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i 226 (293)
+||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -..... . .+.+..| ....
T Consensus 110 kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~~G--~~~a 170 (272)
T PRK06142 110 KPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMV---ADVGSL----Q--------RLPRIIG--DGHL 170 (272)
T ss_pred CCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCC---CCchHH----H--------HHHHHhC--HHHH
Confidence 999999999999999999999996 9999999887655443321 111100 0 0111122 1233
Q ss_pred HHhhcCCcccCHHHHHHcCCceeecCC
Q 041849 227 QKDIDRDRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 227 ~~~~~~~~~lsa~EAle~GLID~I~~~ 253 (293)
.+++-.+..++|+||+++||||+|...
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 454545677899999999999999975
No 74
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=3.5e-06 Score=78.03 Aligned_cols=140 Identities=16% Similarity=0.091 Sum_probs=95.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH-----------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT-----------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag-----------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.|+|.=+ |.|+++... ..+++.|..+++||++.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 114 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIR 114 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 788888999999998887665554444321 224554320 1234557788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||. |++.++++|.+.....|..-...-.. .+.+..| .....+++-.+.
T Consensus 115 G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~vG--~~~a~~l~ltg~ 175 (269)
T PRK06127 115 GYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVK---------------NLVDLVG--PSAAKDLFYTAR 175 (269)
T ss_pred CEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHH---------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999996 99999999987665443221110000 0111122 233455555678
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 176 ~~~a~eA~~~Glv~~vv~~~~ 196 (269)
T PRK06127 176 RFDAAEALRIGLVHRVTAADD 196 (269)
T ss_pred CCCHHHHHHcCCCCEeeCHHH
Confidence 899999999999999997654
No 75
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.50 E-value=1.7e-06 Score=80.71 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=97.2
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE------eCCCCCHHHH-----------------HHHHHHHHhcCCCeEEE
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFV------NSPGGSLSAT-----------------MAIYDVVQLVRADVSTV 152 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I------NSPGGsV~ag-----------------~aIyd~I~~~~~pV~tv 152 (293)
.++..+.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCA 113 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 377888899999999888766566555532 1445554321 11345677888999999
Q ss_pred EccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 153 v~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
+.|.|..+|.-++++||. |++.++++|.+-....|.. ..+... ...+.+..| .....+++-.
T Consensus 114 V~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~~~G--~~~a~~lllt 175 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGRVID--RKVAESLLLR 175 (278)
T ss_pred EcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH------------HHHHHHhcC--HHHHHHHHHc
Confidence 999999999999999996 9999999987754433321 011110 001222233 3345566666
Q ss_pred CcccCHHHHHHcCCceeecCCCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+.-|+++||+++||||+|...++
T Consensus 176 g~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 176 GRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred CCccCHHHHHHcCCCcEecChHH
Confidence 78899999999999999987654
No 76
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.49 E-value=2.8e-06 Score=78.04 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=92.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++ .+.|+|.=+ |-|+++... ..+++.|..+++||++.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 77888899999999888765 655555311 334444210 1234567788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-++++||. |++.+++.|.+-....|. ..+..... .+.+..| .....+++-.+.
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~---~p~~g~~~------------~l~~~vG--~~~a~~l~l~g~ 162 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAKIGL---IPDSGGTW------------SLPRLVG--RARAMGLAMLGE 162 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCC---CCCccHHH------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999996 999999998764433221 11100000 0111112 123344555567
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 163 ~~~a~eA~~~Glv~~vv~~~~ 183 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDDAA 183 (256)
T ss_pred CCCHHHHHHcCCcceeeChHH
Confidence 899999999999999987654
No 77
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=3.9e-06 Score=77.22 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=93.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG-------GSLSA---------------TMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG-------GsV~a---------------g~aIyd~I~~~~~pV~tvv~ 154 (293)
++.++...+.+.+..++.++..+.|+| .+-| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 788888999999998887655554444 3433 44322 12345667788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||- |++.++++|.+-....|..-.... .. . +.+..| .....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g~---~~----~--------l~~~vG--~~~a~~l~l~g~ 166 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAGG---TQ----R--------LPRLIG--VGRAKELIYTGR 166 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCccH---HH----H--------HHHHhC--HHHHHHHHHhCC
Confidence 9999999999999996 999999998775554332111000 00 0 011112 123344454567
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK07657 167 RISAQEAKEIGLVEFVVPAHL 187 (260)
T ss_pred CCCHHHHHHcCCCCeecCHHH
Confidence 799999999999999998665
No 78
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=3.4e-06 Score=77.66 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=93.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|.|+++..- ..++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 77888889999998887665454444421 1334554320 1244567788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||. |++.++++|++-....|... +.... .+.+..| .....+++-.+.
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~~-------------~l~~~vg--~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIP---ATISP-------------YVIRAMG--ERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCc---cchHH-------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999996 99999999877554433211 11100 0111222 333445555577
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++|+||+++||||+|...++
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~~ 188 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVPAEA 188 (262)
T ss_pred ccCHHHHHHcCCCCeecCHHH
Confidence 889999999999999996543
No 79
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=2.9e-06 Score=78.52 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=91.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH-----------------HHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT-----------------MAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag-----------------~aIyd~I~~~~~pV~tvv~G 155 (293)
++..+.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 78888889999998888766555554421 1344544311 12344566788999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|.-++++||. |++.++++|.+-....|......-.. . +.+..|. ....+++-.+..
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~-------~--------l~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAAI-------V--------WPLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchhh-------H--------HHHHhCH--HHHHHHHHcCCc
Confidence 999999999999996 99999998875433333211100000 0 0111111 233344445678
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
|+|+||+++||||+|...++
T Consensus 177 ~~a~eA~~~Glv~~vv~~~~ 196 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDDDE 196 (268)
T ss_pred cCHHHHHHcCCcceecCHHH
Confidence 99999999999999987654
No 80
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=2.2e-06 Score=79.04 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=94.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++..- ..+++.|+.+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 777888888888888776554554444322 334554320 1256678889999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-. .+..+ +......+++-.+.
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~-------------~~~~~--vG~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLI---PATISP-------------YVVAR--MGEANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCC---cccchh-------------hHHhh--ccHHHHHHHHHhCC
Confidence 9999999999999996 9999999887655443321 111000 00111 22234455666678
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 169 ~~~a~eA~~~Glv~~v~~~~~ 189 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPAER 189 (262)
T ss_pred ccCHHHHHHcCCcceecCHHH
Confidence 899999999999999987654
No 81
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=2.9e-06 Score=77.93 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=93.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA-------------TMAIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a-------------g~aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 778888999999988887665555555311 23454432 1234456788899999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.++++|.+-....|.. .+.... . .+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG--~~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGVL---PGMGGS----Q--------RLTRAVG--KAKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCcC---CCccHH----H--------HHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999996 9999999887644333221 111100 0 1112222 12334445556789999
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
||+++||||+|...++
T Consensus 169 eA~~~Glv~~vv~~~~ 184 (257)
T PRK05862 169 EAERAGLVSRVVPADK 184 (257)
T ss_pred HHHHcCCCCEeeCHhH
Confidence 9999999999988654
No 82
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=2.8e-06 Score=78.39 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=94.1
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEc
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSA----------------TMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~ 154 (293)
.++..+.+.+...|..++.++.++.|+|.=+ |.|+++.. ...+...|..+++||++.+.
T Consensus 31 al~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 110 (262)
T PRK06144 31 AMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIA 110 (262)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3677888889899988886655555554321 33555432 11244556788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeeccc-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPM-GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~-~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
|.|..+|.-++++||. |++.+++.|.+-... .|. .-..... . .+.+..| .....+++-.+
T Consensus 111 G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~---~p~~g~~----~--------~l~~~vG--~~~a~~l~l~g 171 (262)
T PRK06144 111 GACVGGGAAIAAACDL--RIATPSARFGFPIARTLGN---CLSMSNL----A--------RLVALLG--AARVKDMLFTA 171 (262)
T ss_pred CeeeehHHHHHHhCCE--EEecCCCEeechhHHhccC---CCCccHH----H--------HHHHHhC--HHHHHHHHHcC
Confidence 9999999999999996 999999998764331 221 1111000 0 1222223 23344555567
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++|+||+++||||+|...++
T Consensus 172 ~~~~a~eA~~~Glv~~vv~~~~ 193 (262)
T PRK06144 172 RLLEAEEALAAGLVNEVVEDAA 193 (262)
T ss_pred CCcCHHHHHHcCCcCeecCHHH
Confidence 8899999999999999998654
No 83
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=2.5e-06 Score=78.32 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=92.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC------CCHHH-------------------HHHHHHHHHhcCCCeEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG------GSLSA-------------------TMAIYDVVQLVRADVST 151 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG------GsV~a-------------------g~aIyd~I~~~~~pV~t 151 (293)
++..+.+.+.+.|..++.++..+.|+| .+-| +++.. ...++..|..+++||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 778888888888888876655554443 4444 44431 12344567788999999
Q ss_pred EEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhc
Q 041849 152 VALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDID 231 (293)
Q Consensus 152 vv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~ 231 (293)
.+.|.|..+|.-++++||. |++.++++|.+-....|.. -+..... .+.+..| .....+++-
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~vg--~~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLA---PDAGGLF------------LLTRAIG--LNRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCC---CCCchhh------------hhHHhhC--HHHHHHHHH
Confidence 9999999999999999996 9999999887533222211 1100000 0111122 233455565
Q ss_pred CCcccCHHHHHHcCCceeecCCCC
Q 041849 232 RDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 232 ~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.+..++|+||+++||||+|.+.++
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred hCCccCHHHHHHcCCcceecCHhH
Confidence 678899999999999999987654
No 84
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.45 E-value=3.8e-06 Score=78.92 Aligned_cols=140 Identities=13% Similarity=0.052 Sum_probs=90.7
Q ss_pred eCHhHHHHHHHHHHHhhh-----CCCCCCeEEEEe-----CCCCCHHHH----------------HHHHHHHH------h
Q 041849 97 IDDFVADAIISQLLLLDA-----QDPTKDIRLFVN-----SPGGSLSAT----------------MAIYDVVQ------L 144 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~-----~~~~~~I~L~IN-----SPGGsV~ag----------------~aIyd~I~------~ 144 (293)
++.++.+.+...+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 677788888888888876 443444444222 445554421 11233333 5
Q ss_pred cCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 041849 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFE 224 (293)
Q Consensus 145 ~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e 224 (293)
+++||++.+.|.|..+|.-|+++||. |++.+++.|.+-....|. .-+.... ..+.+..| ..
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl---~p~~g~~------------~~l~~~vG--~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNL---FPGMGAY------------SFLARRVG--PK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCc---CCCchHH------------HHHHHHhh--HH
Confidence 78899999999999999999999996 999999988764433221 1111100 01122222 23
Q ss_pred HHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 225 QVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 225 ~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
...+++-.+..|+++||+++||||++...++
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~~e 211 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVEDGQ 211 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 3455565678899999999999999987654
No 85
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=4.5e-06 Score=76.60 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=91.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH---------------HH-HHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT---------------MA-IYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag---------------~a-Iyd~I~~~~~pV~tvv~G~ 156 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|-|+++... .. +...|+.+++||++.+.|.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCe
Confidence 77888889988888887655444333321 0334554321 11 1224667889999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|..+|..++++||. |++.+++.|.+.....|.. -...... . +.+..| .....+++-.+..|
T Consensus 103 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~----~--------l~~~vG--~~~a~~l~ltg~~~ 163 (255)
T PRK06563 103 CLTLGIELMLAADI--VVAADNTRFAQLEVQRGIL---PFGGATL----R--------FPQAAG--WGNAMRYLLTGDEF 163 (255)
T ss_pred eecHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHHH----H--------HHHHhh--HHHHHHHHHcCCCc
Confidence 99999999999996 9999999988765543321 0100000 0 111122 12234555557788
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
+++||+++||||+|...++
T Consensus 164 ~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK06563 164 DAQEALRLGLVQEVVPPGE 182 (255)
T ss_pred CHHHHHHcCCCcEeeCHHH
Confidence 9999999999999987654
No 86
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=5.9e-06 Score=75.66 Aligned_cols=134 Identities=15% Similarity=0.137 Sum_probs=89.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEccchhhH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------MAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
++..+.+.+.+.+..++.++.++.|+|.=. |.|+++..- ..++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 788888999999998887655554544311 455665421 1345567788899999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHH
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~E 240 (293)
|.-++++||. |++.+++.|.+.....|.. -+..... .+.+..| . ...+++-.+..++|+|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~~~~~~Gl~---p~~g~~~------------~l~~~~g--~-~a~~lll~g~~~~a~e 163 (248)
T PRK06072 104 CIGIALSTDF--KFASRDVKFVTAFQRLGLA---SDTGVAY------------FLLKLTG--Q-RFYEILVLGGEFTAEE 163 (248)
T ss_pred HHHHHHhCCE--EEEcCCCEEecchhhcCcC---CCchHHH------------HHHHHhh--H-HHHHHHHhCCccCHHH
Confidence 9999999996 9999999987655443322 1111000 0111122 1 2233333456789999
Q ss_pred HHHcCCceee
Q 041849 241 AVEYGIIDGV 250 (293)
Q Consensus 241 Ale~GLID~I 250 (293)
|+++||||.+
T Consensus 164 A~~~Glv~~~ 173 (248)
T PRK06072 164 AERWGLLKIS 173 (248)
T ss_pred HHHCCCcccc
Confidence 9999999964
No 87
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=3.5e-06 Score=77.57 Aligned_cols=140 Identities=11% Similarity=0.024 Sum_probs=93.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHHH----------HH--HHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSATM----------AI--YDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag~----------aI--yd~I~~~~~pV~tvv~G~AAS 159 (293)
++.++.+.+.+.|..++.++.++.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 777788889888888887665555555322 3356654311 11 122346789999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.++++|.+.....|.. -+.... . .+.+..| .....+++-.+..++|+
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vg--~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGLA---ALAGGL----H--------RLPRQIG--LKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCCC---CCchHH----H--------HHHHHcC--HHHHHHHHHcCCcCCHH
Confidence 99999999996 9999999998765543321 111100 0 1112223 33344555557889999
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
||+++||||+|...++
T Consensus 169 eA~~~GLv~~vv~~~~ 184 (259)
T PRK06494 169 EGLELGFVNEVVPAGE 184 (259)
T ss_pred HHHHcCCCcEecCHhH
Confidence 9999999999988654
No 88
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=5.7e-06 Score=74.75 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=88.8
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCC------CCCHHH--------------HHHHHHHHHhcCCCeEEEEccc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSP------GGSLSA--------------TMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSP------GGsV~a--------------g~aIyd~I~~~~~pV~tvv~G~ 156 (293)
++.++.+.+.+.|..++ + ..+ + |.|... |+++.. ...++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~-~~~-v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-D-DRA-V-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-c-cCc-E-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 77788888888888776 2 233 3 333333 444321 1234555677889999999999
Q ss_pred hhhHHHHHhcCCCCCcEEEecc-eeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 157 SASTASLILGGGTKGKRFAMPN-TRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~-S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
|..+|..|+++||. |++.++ ++|.+-....|.. +.... .. .+.++.|. ....+++-.+..
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~~-----~~--------~l~~~~g~--~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHAA-----IE--------LARDRLTP--SAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChHH-----HH--------HHHHHcCH--HHHHHHHHcCcc
Confidence 99999999999996 999998 8887644433211 11100 00 01111221 233444556788
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
++|+||+++||||+|...++
T Consensus 163 ~~a~eA~~~Glv~~vv~~~~ 182 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVPPEQ 182 (229)
T ss_pred cCHHHHHHCCCceeccChHH
Confidence 99999999999999987654
No 89
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=1.8e-06 Score=80.98 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=93.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH-------------------------------------H
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA-------------------------------------T 135 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a-------------------------------------g 135 (293)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. .
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 777888888888888876655554544211 33344321 0
Q ss_pred HHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 041849 136 MAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRII 215 (293)
Q Consensus 136 ~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~y 215 (293)
..++..|+.+++||++.+.|.|..+|.-|+++||. |++.+++.|.+-....|..| .... .+.
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~~-----~l~------- 169 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEYF-----AHP------- 169 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chHH-----HHH-------
Confidence 12345577889999999999999999999999996 99999999876444444322 1100 000
Q ss_pred HHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 216 SGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 216 a~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
...| .....+++-.++.++|+||+++||||+|...++
T Consensus 170 -~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~ 206 (288)
T PRK08290 170 -WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRDE 206 (288)
T ss_pred -HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHH
Confidence 1112 233455555578899999999999999987654
No 90
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.43 E-value=5.3e-06 Score=81.48 Aligned_cols=147 Identities=9% Similarity=-0.023 Sum_probs=97.5
Q ss_pred cEEEEcce-----eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHHH-------------------HHHH
Q 041849 89 RIVFLGNN-----IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSATM-------------------AIYD 140 (293)
Q Consensus 89 riifL~G~-----Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag~-------------------aIyd 140 (293)
++|.|+-+ ++.++...+...|..++.++..+.|+|.=+ |-||++.+.. .+..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 56667655 888899999999999887766654444322 4567664321 1222
Q ss_pred HHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041849 141 VVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTG 220 (293)
Q Consensus 141 ~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg 220 (293)
.|..+++|+++.+.|.|+.+|.-|+++|+. |++.++++|.+-....|.. -++.... .+.++ .|
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~---PdvG~s~-~L~rl-----------~g 195 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFH---PDAGASY-YLSRL-----------PG 195 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCC---CCccHHH-HHHHh-----------cC
Confidence 355778999999999999999999999996 9999998887655543322 1211110 01111 11
Q ss_pred CCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 221 RSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 221 ~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.. -..++-.+..++|+||+++||+|+++...+
T Consensus 196 ~~---g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 196 YL---GEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred HH---HHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 10 112333467889999999999999998764
No 91
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=4.4e-06 Score=76.88 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=93.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT-------------------MAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag-------------------~aIyd~I~~~~~pV~tvv 153 (293)
++.++.+.+.+.+..++ ++.++.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888889999998888 66565555531 1444554321 114556778899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|..+|.-|+++||- |++.+++.|.+-....|. ........ . +.+..| .....+++-.+
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~---~p~~g~~~----~--------l~~~vG--~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKIGL---VPDSGGTW----F--------LPRLVG--MARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEeccccccCC---CCCccHHH----H--------HHHHhC--HHHHHHHHHcC
Confidence 99999999999999996 999999998754333221 11110000 0 111112 22334555557
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
+.++++||+++||||+|...++
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred CCcCHHHHHHcCCccEeeChHH
Confidence 8899999999999999998654
No 92
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.42 E-value=4.7e-06 Score=77.55 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=94.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT-------------------MAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag-------------------~aIyd~I~~~~~pV~tvv 153 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|-|+++... ..++..|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888889999888888766555555532 1334554321 123456778899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|..+|.-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++-.+
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG--~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIP---PGGGVS------------KAMADTVG--HRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCC---CCcchH------------HHHHHHcC--HHHHHHHHhcC
Confidence 99999999999999996 9999999987644333221 111000 01111222 23344555556
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++|+||+++||||+|...++
T Consensus 173 ~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred CccCHHHHHHcCCcceecCHHH
Confidence 7899999999999999988654
No 93
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=5.9e-06 Score=75.85 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=92.9
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEE----EeCCCCCHHHHH----------HHHHHH-HhcCCCeEEEEccchhhHH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLF----VNSPGGSLSATM----------AIYDVV-QLVRADVSTVALGMSASTA 161 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~----INSPGGsV~ag~----------aIyd~I-~~~~~pV~tvv~G~AASag 161 (293)
++.++.+.+.+.|..++.++.++.|+|. .=|.|+++.... .+...+ ..+++||++.+.|.|..+|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 7888889999999988876655555542 124556654311 111111 3577999999999999999
Q ss_pred HHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 162 SLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 162 ~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
.-++++||. |++.+++.|.+-....|.. -+.... . .+.+..| .....+++-.+..++++||
T Consensus 107 ~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vg--~~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 107 FELALACDL--IVAARDAKFGLPEVKRGLV---AAGGGL----L--------RLPRRIP--YHIAMELALTGDMLTAERA 167 (254)
T ss_pred HHHHHhCCE--EEEeCCCEEeCchhhcCCC---CCchHH----H--------HHHHHcC--HHHHHHHHHcCCccCHHHH
Confidence 999999996 9999999887644433321 111100 0 1112223 3344555556788999999
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
+++||||+|...++
T Consensus 168 ~~~Glv~~vv~~~~ 181 (254)
T PRK08252 168 HELGLVNRLTEPGQ 181 (254)
T ss_pred HHcCCcceecCcch
Confidence 99999999998654
No 94
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.40 E-value=5.9e-06 Score=76.41 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=93.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.|+|.=+ |.|+++... ..+...|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 777788888888888877665555555221 445554310 1344556788899999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-++++||- |++.++++|.+-....|.. -+.... .+.+..|. ....+++-.+.
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~---p~~~~~-------------~l~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA---PAVISP-------------FVVKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC---cchhHH-------------HHHHHhCH--HHHHHHHHhCc
Confidence 9999999999999996 9999999987744433321 111100 01111222 23444444567
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.|+|+||+++||||+|...++
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~~ 190 (265)
T PRK05674 170 RFDGRRARELGLLAESYPAAE 190 (265)
T ss_pred ccCHHHHHHCCCcceecCHHH
Confidence 889999999999999987543
No 95
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.40 E-value=7.3e-06 Score=79.07 Aligned_cols=140 Identities=15% Similarity=0.024 Sum_probs=92.9
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHH------------------HHHHHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSA------------------TMAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~a------------------g~aIyd~I~~~~~pV~tvv 153 (293)
++..+...+...+..++.++.++.|+|.=. |-|+++.. ...+.+.|..+++||++.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788888999999998886655544444221 23444332 1235566788899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|..+|.-|+++||. |++.++++|.+-....|.. -+.... . .+.+..|. .....++-.+
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~---P~~Ggt-~-----------rLprlvG~--~rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSA---PIGGAT-D-----------FLPLMIGC--EQAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCC---CCccHH-H-----------HHHHhhCH--HHHHHHHHhC
Confidence 99999999999999996 9999999988755543321 110000 0 01111121 2223333346
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..|+|+||+++||||+|....+
T Consensus 193 e~~sA~EA~~~GLVd~VVp~~~ 214 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPALK 214 (360)
T ss_pred CcCcHHHHHHcCChheecCchh
Confidence 7889999999999999988654
No 96
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=5.9e-06 Score=75.96 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=93.0
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHHH-----H--------HHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSATM-----A--------IYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag~-----a--------Iyd~I~~~~~pV~tvv~G~AAS 159 (293)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... . +...+..+++||++.+.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 788888999999998887665555554321 4556654311 0 0112235689999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
+|.-++++||. |++.++++|.+-....|. ...... .. .+.+..| .....+++-.+..|+++
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l~~~iG--~~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCRRWGV---PLIDGG----TV--------RLPRLIG--HSRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCcccccCC---CCCccH----HH--------HHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999996 999999988764433221 111000 00 1111223 23345555567889999
Q ss_pred HHHHcCCceeecCCCCC
Q 041849 240 EAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 240 EAle~GLID~I~~~~~~ 256 (293)
||+++||||+|...++.
T Consensus 168 eA~~~Glv~~vv~~~~l 184 (254)
T PRK08259 168 EALAIGLANRVVPKGQA 184 (254)
T ss_pred HHHHcCCCCEeeChhHH
Confidence 99999999999987653
No 97
>PRK08321 naphthoate synthase; Validated
Probab=98.39 E-value=8.3e-06 Score=76.97 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=96.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEE-----------EeCCCCCHHHH-----------------------H---HHH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLF-----------VNSPGGSLSAT-----------------------M---AIY 139 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~-----------INSPGGsV~ag-----------------------~---aIy 139 (293)
++.++...+.+.|..++.++..+.|+|. .=|-||++... . .+.
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 8888899999999988877666666664 33677776420 1 234
Q ss_pred HHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEe-cceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 041849 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAM-PNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGF 218 (293)
Q Consensus 140 d~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~-P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~ 218 (293)
+.|..+++||++.+.|.|..+|.-|+++||. |++. ++++|.+-....|.. +.... . ..+.+.
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--p~~~~-~------------~~L~r~ 191 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSF--DGGYG-S------------AYLARQ 191 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccC--CCchH-H------------HHHHHH
Confidence 5677889999999999999999999999996 9998 589887644332211 01000 0 011222
Q ss_pred hCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 219 TGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 219 tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.| .....+++-.+..++|+||+++||||+|...++
T Consensus 192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~ 226 (302)
T PRK08321 192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAE 226 (302)
T ss_pred hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHHH
Confidence 23 223445555678899999999999999998654
No 98
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=8.7e-06 Score=75.04 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=93.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHHH----------------HH--HHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSATM----------------AI--YDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag~----------------aI--yd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.|+|.=+ |.|+++.... .+ ...+..+++||++.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 108 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE 108 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence 788889999999998887665554444321 3445553210 01 1113567899999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-++++||- |++.++++|.+.....|.. -+.... . .+.+..| .....+++-.+.
T Consensus 109 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~r~vG--~~~a~~l~ltg~ 169 (263)
T PRK07799 109 GPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLF---PMGGSA----V--------RLVRQIP--YTVACDLLLTGR 169 (263)
T ss_pred CeEeccHHHHHHhCCE--EEecCCCEecCcccccCcC---CCccHH----H--------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999996 9999999987755443321 111100 0 0111122 234455565678
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 170 HITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred CCCHHHHHHcCCccEecCcch
Confidence 899999999999999998765
No 99
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.38 E-value=9.5e-06 Score=75.12 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=93.1
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH-------HHHHHHHHH---hcCCCeEEEEccchh
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA-------TMAIYDVVQ---LVRADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a-------g~aIyd~I~---~~~~pV~tvv~G~AA 158 (293)
++....|.++.+.++...+.+..+++. .-+|+-.+||||..+.. +..+...+. ..+.|+++++.|-|.
T Consensus 71 ~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~ 148 (256)
T PRK12319 71 NLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGG 148 (256)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 444456778888888887777766653 46999999999987422 234444444 446899999999999
Q ss_pred hHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCH
Q 041849 159 STASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSP 238 (293)
Q Consensus 159 Sag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa 238 (293)
|+|++.++.++. .+|.|++.+.+-.|.+. ....++ . . ...++..+.+ -+++
T Consensus 149 gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~-------a~il~~------~---------~-~~a~~aa~~~----~~~a 199 (256)
T PRK12319 149 SGGALALAVADQ--VWMLENTMYAVLSPEGF-------ASILWK------D---------G-SRATEAAELM----KITA 199 (256)
T ss_pred cHHHHHhhcCCE--EEEecCceEEEcCHHHH-------HHHHhc------C---------c-ccHHHHHHHc----CCCH
Confidence 999999999986 99999999987766431 000000 0 0 1112222322 3499
Q ss_pred HHHHHcCCceeecCC
Q 041849 239 IEAVEYGIIDGVIDR 253 (293)
Q Consensus 239 ~EAle~GLID~I~~~ 253 (293)
.++.+.|+||+|+..
T Consensus 200 ~~l~~~g~iD~ii~e 214 (256)
T PRK12319 200 GELLEMGVVDKVIPE 214 (256)
T ss_pred HHHHHCCCCcEecCC
Confidence 999999999999986
No 100
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.37 E-value=5.7e-06 Score=78.65 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=90.8
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH-------HHHHHHH---HHhcCCCeEEEEccchhhHH
Q 041849 92 FLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA-------TMAIYDV---VQLVRADVSTVALGMSASTA 161 (293)
Q Consensus 92 fL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a-------g~aIyd~---I~~~~~pV~tvv~G~AASag 161 (293)
...|.++.+.++...+.+..+++- .-+|+-.+||||..+.. +.+|... +.....|+++++.|-|.|+|
T Consensus 127 ~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGG 204 (319)
T PRK05724 127 RNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGG 204 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHH
Confidence 445777788888877777766653 46999999999965321 2234444 44667899999999999999
Q ss_pred HHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 162 SLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 162 ~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
++.++.++. .+|.|++.+.+-.|.+. ....++. ... .++..+ ..-+++.++
T Consensus 205 Ala~~~aD~--v~m~~~A~~svisPEg~-------a~Il~~~---------------~~~-a~~aae----~~~ita~~l 255 (319)
T PRK05724 205 ALAIGVGDR--VLMLEYSTYSVISPEGC-------ASILWKD---------------ASK-APEAAE----AMKITAQDL 255 (319)
T ss_pred HHHHhccCe--eeeecCceEeecCHHHH-------HHHHhcC---------------chh-HHHHHH----HcCCCHHHH
Confidence 999988886 89999999987766431 1111110 011 122222 233799999
Q ss_pred HHcCCceeecCC
Q 041849 242 VEYGIIDGVIDR 253 (293)
Q Consensus 242 le~GLID~I~~~ 253 (293)
++.|+||+|+..
T Consensus 256 ~~~g~iD~II~E 267 (319)
T PRK05724 256 KELGIIDEIIPE 267 (319)
T ss_pred HHCCCceEeccC
Confidence 999999999974
No 101
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.36 E-value=8.3e-06 Score=76.83 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=94.3
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH-------------------------------------
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------------------------------- 135 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------------------------- 135 (293)
++..+...+.+.|..++.++..+.|+|.=+ |-|+++...
T Consensus 34 l~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T PRK08272 34 ITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMM 113 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHH
Confidence 788888999999988887665554444321 344554321
Q ss_pred ---HHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHH
Q 041849 136 ---MAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFT 212 (293)
Q Consensus 136 ---~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~ 212 (293)
..++..|..+++||++.+.|.|..+|.-|+++||- |++.+++.|++-.... .|-+.. . .
T Consensus 114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~~--gg~~~~-~-----~-------- 175 (302)
T PRK08272 114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTRV--WGVPAT-G-----M-------- 175 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchhc--ccCChH-H-----H--------
Confidence 12455677889999999999999999999999996 9999999886543321 121111 0 0
Q ss_pred HHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 213 RIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 213 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
+.... ......+++-.+..++|+||+++||||++...++
T Consensus 176 --~~~~v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~ 214 (302)
T PRK08272 176 --WAYRL--GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEE 214 (302)
T ss_pred --HHHHh--hHHHHHHHHHcCCccCHHHHHHcCCCceecCHHH
Confidence 01112 2334456666678899999999999999987654
No 102
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.36 E-value=3.8e-06 Score=79.74 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=90.7
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEccchhhHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA-------TMAIYDVV---QLVRADVSTVALGMSASTAS 162 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a-------g~aIyd~I---~~~~~pV~tvv~G~AASag~ 162 (293)
..|.++.+.++...+.+..+++- .-+|+-++||||..+.. +.+|...+ .....|+++++.|-|+|+|+
T Consensus 128 ~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGA 205 (316)
T TIGR00513 128 NFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGA 205 (316)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHH
Confidence 34778888888877777766653 46999999999987322 33455544 35568999999999999999
Q ss_pred HHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHH
Q 041849 163 LILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAV 242 (293)
Q Consensus 163 lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAl 242 (293)
+.++.++. .+|.|++.+.+-.|.+. ....++.- ...++..+. .-+++.++.
T Consensus 206 la~~~aD~--v~m~~~a~~sVisPEg~-------a~Il~kd~----------------~~a~~aae~----~~~ta~~l~ 256 (316)
T TIGR00513 206 LAIGVGDK--VNMLEYSTYSVISPEGC-------AAILWKDA----------------SKAPKAAEA----MKITAPDLK 256 (316)
T ss_pred hhhccCCE--EEEecCceEEecCHHHH-------HHHhccch----------------hhHHHHHHH----ccCCHHHHH
Confidence 98888885 89999999988766431 11111100 001222221 335899999
Q ss_pred HcCCceeecCC
Q 041849 243 EYGIIDGVIDR 253 (293)
Q Consensus 243 e~GLID~I~~~ 253 (293)
+.|+||+|+..
T Consensus 257 ~~G~iD~II~e 267 (316)
T TIGR00513 257 ELGLIDSIIPE 267 (316)
T ss_pred HCCCCeEeccC
Confidence 99999999985
No 103
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.34 E-value=6.6e-06 Score=78.23 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=91.1
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHH-------HHHHHHHHH---HhcCCCeEEEEccchhhHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS-------ATMAIYDVV---QLVRADVSTVALGMSASTAS 162 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~-------ag~aIyd~I---~~~~~pV~tvv~G~AASag~ 162 (293)
..|..+++.++...+.+..++.. .-+|+-++||||..+. .+.+|...+ ...+.|+++++.|-|.|+|+
T Consensus 131 ~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGA 208 (322)
T CHL00198 131 NFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGA 208 (322)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHH
Confidence 34666777777777777666653 4699999999997642 233455544 45568999999999999999
Q ss_pred HHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHH
Q 041849 163 LILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAV 242 (293)
Q Consensus 163 lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAl 242 (293)
+.++.+|. .+|.++|.+.+-.|.+. ..+.++ +.++..+..+ -.-+||++.+
T Consensus 209 lal~~aD~--V~m~e~a~~sVisPEg~-------a~Il~~-------------------d~~~a~~aA~-~~~ita~dL~ 259 (322)
T CHL00198 209 LGIGIGDS--IMMLEYAVYTVATPEAC-------AAILWK-------------------DSKKSLDAAE-ALKITSEDLK 259 (322)
T ss_pred HhhhcCCe--EEEeCCeEEEecCHHHH-------HHHHhc-------------------chhhHHHHHH-HcCCCHHHHH
Confidence 98888885 89999999988776431 111111 1112222222 2447999999
Q ss_pred HcCCceeecCC
Q 041849 243 EYGIIDGVIDR 253 (293)
Q Consensus 243 e~GLID~I~~~ 253 (293)
++|+||+|+..
T Consensus 260 ~~giiD~ii~E 270 (322)
T CHL00198 260 VLGIIDEIIPE 270 (322)
T ss_pred hCCCCeEeccC
Confidence 99999999974
No 104
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=5.2e-06 Score=78.25 Aligned_cols=136 Identities=16% Similarity=0.022 Sum_probs=94.8
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH-------------------H-----------HHHHHHH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA-------------------T-----------MAIYDVV 142 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a-------------------g-----------~aIyd~I 142 (293)
++..+.+.+.+.|..++.++.++.|+|.=+ |-||++.. . ...+..|
T Consensus 29 l~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (298)
T PRK12478 29 IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAI 108 (298)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHH
Confidence 788888999999988887655555555311 33454421 0 0134457
Q ss_pred HhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 041849 143 QLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMG-GASGQVLDVEIQAREIMHNKDNFTRIISGFTGR 221 (293)
Q Consensus 143 ~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~-~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~ 221 (293)
..+++||++.+.|.|..+|.-|+++||- |++.++++|.+-.... |... .. . . . .. +
T Consensus 109 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~---~---~--~---------~~--v 165 (298)
T PRK12478 109 WRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TG---M---W--L---------YR--L 165 (298)
T ss_pred HhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hh---H---H--H---------HH--h
Confidence 7889999999999999999999999996 9999999998755542 3221 00 0 0 0 11 1
Q ss_pred CHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 222 SFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 222 ~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
......+++-.+..++|+||+++||||+|...++
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~ 199 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQAAEAELINEAVPFER 199 (298)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 2344556666678999999999999999997654
No 105
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.32 E-value=6.2e-06 Score=80.57 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=88.6
Q ss_pred ceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEccchhhHHHHH
Q 041849 95 NNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA-------TMAIYDVV---QLVRADVSTVALGMSASTASLI 164 (293)
Q Consensus 95 G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a-------g~aIyd~I---~~~~~pV~tvv~G~AASag~lI 164 (293)
|.++++.++...+.+..++.- .-+|+-+|||||..+.. +.+|...+ -..+.|+++++.|-|.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 557777778777777766653 46999999999976421 23455544 4556899999999999999999
Q ss_pred hcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHc
Q 041849 165 LGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEY 244 (293)
Q Consensus 165 l~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~ 244 (293)
+++|+. .+|.+++.+.+-.|.+ ...+.++.- .. .++..+ ..-+|+.+++++
T Consensus 278 lg~aD~--VlMle~A~ysVisPEg-------aAsILwkd~---------------~~-A~eAAe----alkitA~dL~~~ 328 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEA-------CAAILWKSA---------------AA-APKAAE----ALRITAAELVKL 328 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHH-------HHHHHhccc---------------cc-hHHHHH----HcCCCHHHHHhC
Confidence 988885 8999999987776642 111111100 00 111112 235799999999
Q ss_pred CCceeecCC
Q 041849 245 GIIDGVIDR 253 (293)
Q Consensus 245 GLID~I~~~ 253 (293)
|+||+|+..
T Consensus 329 GiID~II~E 337 (431)
T PLN03230 329 GVVDEIVPE 337 (431)
T ss_pred CCCeEeccC
Confidence 999999974
No 106
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.32 E-value=1.2e-05 Score=73.86 Aligned_cols=137 Identities=10% Similarity=0.033 Sum_probs=91.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH-----------------HHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT-----------------MAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag-----------------~aIyd~I~~~~~pV~tvv~G 155 (293)
++.++.+.+.+.|..++. ..+.|+|.= =|.|+++... ..++..|..+++||++.|.|
T Consensus 28 l~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 777888888888887762 244444321 1445554320 12445567788999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|..++++||. |++.++++|.+.....|... .... . .+.+..| .....+++-.+..
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~~~-----~--------~l~~~vg--~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP---ACVL-----P--------FLIRRIG--TQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc---chhh-----H--------HHHHHhC--HHHHHHHHHhCCc
Confidence 999999999999996 99999999987655443321 1110 0 1112222 2233445555678
Q ss_pred cCHHHHHHcCCceeecCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~ 255 (293)
++++||+++||||+|....+
T Consensus 166 ~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred ccHHHHHHcCCCceecCcHH
Confidence 99999999999999987543
No 107
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.32 E-value=2.6e-05 Score=71.20 Aligned_cols=138 Identities=15% Similarity=0.145 Sum_probs=89.8
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH-----------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT-----------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag-----------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.+..++.++....++|.=. |.|+++... ..++..|..+++||++.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 788888888888888876544333444322 345554321 1244557788899999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEec-ceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH-HHhhcC
Q 041849 155 GMSASTASLILGGGTKGKRFAMP-NTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQV-QKDIDR 232 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P-~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i-~~~~~~ 232 (293)
|.|..+|..++++||. |++.+ .+.|.+-....|.. ..... ...+.+..|.. .. .+++-.
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~~~vG~~--~a~~~lllt 163 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLRAKIGSP--AARRDVLLR 163 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCC--CChHH-------------HHHHHHHcChH--HHHHHHHHc
Confidence 9999999999999996 99975 45776544433321 11111 00122223322 22 345555
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~ 253 (293)
++.|+|+||+++||||+|...
T Consensus 164 G~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 164 AAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred CCcCCHHHHHHCCCcceecCC
Confidence 788999999999999999874
No 108
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.30 E-value=4.3e-06 Score=76.56 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=90.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH---------------HHHHHHHHhcCCCeEEEEccch
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT---------------MAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag---------------~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++.++.+.+.+.|..++.++.++.|+|.= =|-|+++... ...+..|..+++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 77888899999998888665555444421 1344554321 1234456788999999999999
Q ss_pred hhHHHHHhcCCCCCcEEEecceeeeeecccCCCC---CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 158 ASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS---GQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 158 ASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~---G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
..+|.-++++||. |++.++++|.+.....|.. |-..- +.+.. ......+++-.++
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~~--G~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWM------------------LQRAV--GPQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceee------------------HHhhh--CHHHHHHHHHhCC
Confidence 9999999999996 9999999987655433321 11100 11111 2233445555578
Q ss_pred ccCHHHHHHcCCceeec
Q 041849 235 YMSPIEAVEYGIIDGVI 251 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~ 251 (293)
.++++||+++||||+|.
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 89999999999999998
No 109
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.29 E-value=1.5e-05 Score=73.37 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=86.5
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC------CCHHH------------------HHHHHHHHHhcCCCeEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG------GSLSA------------------TMAIYDVVQLVRADVSTV 152 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG------GsV~a------------------g~aIyd~I~~~~~pV~tv 152 (293)
++.++.+.+.+.|..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677888888888888776554444444 4444 33321 022445567888999999
Q ss_pred EccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 153 v~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
+.|.|..+|.-++++||. |++.++++|.+-....|.. .++... ..+.+. + .....+++-.
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~l~~l---------~--~~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVA---PAIISL----TLLPRL---------S--PRAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCC---CCcccc----hhHHhh---------h--HHHHHHHHHh
Confidence 999999999999999996 9999999887644433321 111100 000000 0 0112333344
Q ss_pred CcccCHHHHHHcCCceeecC
Q 041849 233 DRYMSPIEAVEYGIIDGVID 252 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~ 252 (293)
+..++++||+++||||++.+
T Consensus 168 g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 168 GEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred CCccCHHHHHHcCCcccchH
Confidence 67789999999999999964
No 110
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.28 E-value=1e-05 Score=74.45 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=89.3
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeC------CCCCHHHH----------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNS------PGGSLSAT----------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INS------PGGsV~ag----------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++.++.+.+.+.|..++ ++..+. |.+.+ .|+++... ..++..|..+++||++.+.
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vrv--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~ 106 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAHI--VVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH 106 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCeeE--EEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 77888889999888873 443433 33333 34554321 1234456677899999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-++++||. |++.++++|.+.....|..-...-. . .+.+.. ......+++-.+.
T Consensus 107 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~-------~--------~L~~~v--g~~~a~~l~ltg~ 167 (260)
T PRK07659 107 GPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGH-------F--------FLQKRV--GENKAKQIIWEGK 167 (260)
T ss_pred CceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchh-------h--------hHHHhc--CHHHHHHHHHhCC
Confidence 9999999999999996 9999999988766543321100000 0 011112 2334556666678
Q ss_pred ccCHHHHHHcCCceeec
Q 041849 235 YMSPIEAVEYGIIDGVI 251 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~ 251 (293)
.++++||+++||||+|.
T Consensus 168 ~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 168 KLSATEALDLGLIDEVI 184 (260)
T ss_pred ccCHHHHHHcCChHHHh
Confidence 89999999999999998
No 111
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.27 E-value=1.2e-05 Score=73.91 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=96.8
Q ss_pred eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHHH----------------HHHHHHHhcCCCeEEEEcc
Q 041849 96 NIDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSATM----------------AIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag~----------------aIyd~I~~~~~pV~tvv~G 155 (293)
.++.++.+.+.+.|..++.++.++.|+|.= =|-||++.... .+...|+.+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 588889999999999988775555444432 24456655421 2566788999999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCC---CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS---GQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~---G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
.|..+|.-|+++||. |++.+++.|++.....|.. |...- +.+..|. ....+++-.
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~~------------------l~r~~G~--~~a~~l~lt 165 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQR------------------LPRLLGR--GRAKELLLT 165 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHHH------------------HHHhcCH--HHHHHHHHc
Confidence 999999999999997 9999999998877654321 11111 1111121 122334445
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~ 253 (293)
+..++++||+++||||++...
T Consensus 166 g~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 166 GEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred CCcCCHHHHHHcCCcCeeeCC
Confidence 788899999999999998875
No 112
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.25 E-value=6.7e-06 Score=76.22 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=100.9
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHHH-------------HHHHHHHhcCCCeEEEEccchhh
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSATM-------------AIYDVVQLVRADVSTVALGMSAS 159 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag~-------------aIyd~I~~~~~pV~tvv~G~AAS 159 (293)
++..+...+.+.+..+++++..+.|+|+= =|-|+++.+.. ..++.+..+++||++.+.|.|-.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 67778889999999999888776666652 13344443332 34555667889999999999999
Q ss_pred HHHHHhcCCCCCcEEEecceeeeeecccCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGA---SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~P~S~imiH~p~~~~---~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
+|.-+++.||- |||.+++.|+.-++..|. .|-..-+. +..|.+ +..+++-.++.+
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~------------------r~vG~s--~Ale~~ltg~~~ 198 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLP------------------RIVGKS--RALEMILTGRRL 198 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHH------------------HHhChH--HHHHHHHhcCcc
Confidence 99999999997 999999999987776542 22222111 122322 234556667899
Q ss_pred CHHHHHHcCCceeecCCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~~ 256 (293)
+++||++.|||++|....++
T Consensus 199 ~AqeA~~~GlVn~Vvp~~~~ 218 (290)
T KOG1680|consen 199 GAQEAKKIGLVNKVVPSGDA 218 (290)
T ss_pred cHHHHHhCCceeEeecchhH
Confidence 99999999999999998874
No 113
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.23 E-value=3e-05 Score=76.13 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=94.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHHH----------------H---HHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSATM----------------A---IYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag~----------------a---Iyd~I~~~~~pV~tvv 153 (293)
++.++...+...|..++.++.++.|+|.=. |-||++.+-. . +...|..+++||++.+
T Consensus 61 Ls~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v 140 (401)
T PLN02157 61 LTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAIL 140 (401)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788899999999998887766655544322 5677764310 1 2234778899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|..+|.-|+++|+. |++.+++.|.+-....|.. -++..... + .+..|. ....++-.+
T Consensus 141 ~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~---Pd~G~s~~-L-----------~rl~G~---~a~~L~LTG 200 (401)
T PLN02157 141 NGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFH---PDAGASFN-L-----------SHLPGR---LGEYLGLTG 200 (401)
T ss_pred eCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCC---CCccHHHH-H-----------HHhhhH---HHHHHHHcC
Confidence 99999999999999996 9999999887655443322 12111100 1 111121 122333446
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++|+||+++||||+++..++
T Consensus 201 ~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 201 LKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred CcCCHHHHHHcCCceEEeCHhH
Confidence 8899999999999999998764
No 114
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.19 E-value=3.6e-05 Score=75.02 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=91.7
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE----eCCCCCHHHH----------H-------HHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV----NSPGGSLSAT----------M-------AIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I----NSPGGsV~ag----------~-------aIyd~I~~~~~pV~tvv~G 155 (293)
++..+...+...|..++.++.++.|+|.= =|-||++... . .+...|..+++||++.+.|
T Consensus 35 l~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G 114 (379)
T PLN02874 35 ISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHG 114 (379)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 78888899999999888765555444421 1345554321 0 1123467788999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcc
Q 041849 156 MSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~ 235 (293)
.|..+|.-|+++|+. |++.++++|.+-....|.. -+..... .+.+ ..|. ....++-.+..
T Consensus 115 ~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~---p~~g~~~-~L~r-----------l~g~---~a~~l~ltG~~ 174 (379)
T PLN02874 115 LVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFH---TDCGFSY-ILSR-----------LPGH---LGEYLALTGAR 174 (379)
T ss_pred eEEecHHHHHHhCCe--EEEeCCeEEeccccccCcC---CChhHHH-HHHh-----------hhHH---HHHHHHHcCCc
Confidence 999999999999996 9999999987655543322 1211110 0111 1110 11233334678
Q ss_pred cCHHHHHHcCCceeecCCCCC
Q 041849 236 MSPIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 236 lsa~EAle~GLID~I~~~~~~ 256 (293)
++++||+++||||++...++.
T Consensus 175 i~a~eA~~~GLv~~vv~~~~l 195 (379)
T PLN02874 175 LNGKEMVACGLATHFVPSEKL 195 (379)
T ss_pred ccHHHHHHcCCccEEeCHHHH
Confidence 999999999999999986544
No 115
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.19 E-value=1.4e-05 Score=81.29 Aligned_cols=142 Identities=10% Similarity=0.019 Sum_probs=92.4
Q ss_pred eCHhHHHHHHHHHHHhh-hCCCCCCeEEEEe-----CCCCCHHHHH---------------H----HHHHHHhcCCCeEE
Q 041849 97 IDDFVADAIISQLLLLD-AQDPTKDIRLFVN-----SPGGSLSATM---------------A----IYDVVQLVRADVST 151 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~-~~~~~~~I~L~IN-----SPGGsV~ag~---------------a----Iyd~I~~~~~pV~t 151 (293)
++..+...+.+.|..++ .++..+.|+|.=+ |.|+++.... . +.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67778888889888887 4455555555432 5566654210 1 34566778999999
Q ss_pred EEccchhhHHHHHhcCCCCCcEEEecc--eeeeeeccc-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Q 041849 152 VALGMSASTASLILGGGTKGKRFAMPN--TRVMIHQPM-GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQK 228 (293)
Q Consensus 152 vv~G~AASag~lIl~ag~kg~R~a~P~--S~imiH~p~-~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~ 228 (293)
.+.|.|..+|..|+++||. |++.++ ++|.+-... .|. ........ .+...+........+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl---~P~~gg~~------------rl~~~~~vg~~~A~~ 191 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGV---LPGTGGLT------------RVTDKRKVRRDLADI 191 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhcccc---CCCcchHH------------HhhhhhhcCHHHHHH
Confidence 9999999999999999996 999887 667653331 221 11111000 011112223334445
Q ss_pred hhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 229 DIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 229 ~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
++-.+..++++||+++||||++...++
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~ 218 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSK 218 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHH
Confidence 554567899999999999999988653
No 116
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.18 E-value=4.2e-05 Score=74.66 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=91.9
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHHH-------------------HHHHHHHhcCCCeEEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSATM-------------------AIYDVVQLVRADVSTVA 153 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag~-------------------aIyd~I~~~~~pV~tvv 153 (293)
++..+...+.+.|..++.++.++.|+|.=+ |-||++.... .+...|..+++||++.+
T Consensus 33 Ls~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v 112 (381)
T PLN02988 33 LSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSIL 112 (381)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 788889999999998887665555444321 4467664311 12235678899999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|.|..+|.-|+++|+. |++.++++|.+-....|.. -++.... .+.++ . |. ....++-.+
T Consensus 113 ~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~---Pd~G~s~-~L~rl----~-------G~---~~~~l~LTG 172 (381)
T PLN02988 113 NGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLF---PDVGASY-FLSRL----P-------GF---FGEYVGLTG 172 (381)
T ss_pred cCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcC---CCccHHH-HHHHH----H-------HH---HHHHHHHcC
Confidence 99999999999999996 9999999887544433321 1111110 01111 1 10 011233346
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++|+||++.||||+++..++
T Consensus 173 ~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 173 ARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred CCCCHHHHHHcCCceEecCHhH
Confidence 7889999999999999998654
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.18 E-value=2.8e-05 Score=81.27 Aligned_cols=140 Identities=13% Similarity=0.138 Sum_probs=94.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE-----eCCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV-----NSPGGSLSA----------------TMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-----NSPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~G 155 (293)
++..+.+.+.+.|..++.++.++.|+|.= =|-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788888988888888665555554431 144555543 123566788899999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecc--eeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 156 MSASTASLILGGGTKGKRFAMPN--TRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~--S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|..+|.-++++||. |++.++ +.|++.....|..-...-. . .+.+..| .....+++-.+
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g~~-------~--------~L~r~vG--~~~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSGGT-------Q--------RLPRLIG--VSTALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCccHH-------H--------HHHHhcC--HHHHHHHHHcC
Confidence 999999999999996 999876 5666655443321000000 0 1111122 22334555567
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++++||+++||||+|...++
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~~ 188 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQSI 188 (699)
T ss_pred CcCCHHHHHhCCCCcEecChhH
Confidence 8899999999999999998654
No 118
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.17 E-value=1.1e-05 Score=77.50 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=90.6
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSAT-------------------MAIYDVVQLVRADVSTV 152 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag-------------------~aIyd~I~~~~~pV~tv 152 (293)
++..+.+.+.+.+..++.++.++.|+|.=. |-|+++..- ..++..|..+++||++.
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 106 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIAL 106 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 778888888888888876554444433211 234544321 12345677889999999
Q ss_pred EccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHh
Q 041849 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGA---SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKD 229 (293)
Q Consensus 153 v~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~---~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~ 229 (293)
+.|.|..+|.-++++||- |++.++++|++-....|. .|...-+ .+..| .....+
T Consensus 107 VnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L------------------~r~~g---~~a~~l 163 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFL------------------SRAPG---ALGTYL 163 (342)
T ss_pred EcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEe------------------hhccc---HHHHHH
Confidence 999999999999999996 999999998775544332 1111100 01111 112333
Q ss_pred hcCCcccCHHHHHHcCCceeecCCCCC
Q 041849 230 IDRDRYMSPIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 230 ~~~~~~lsa~EAle~GLID~I~~~~~~ 256 (293)
+-.+..++|+||+++||||++...++.
T Consensus 164 lltG~~i~A~eA~~~GLv~~vv~~~~l 190 (342)
T PRK05617 164 ALTGARISAADALYAGLADHFVPSADL 190 (342)
T ss_pred HHcCCCCCHHHHHHcCCcceecCHHHH
Confidence 444678899999999999999986543
No 119
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.16 E-value=1.9e-05 Score=81.70 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=90.4
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHH-------HHHHHHHHHH---hcCCCeEEEEccchhhHH
Q 041849 92 FLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS-------ATMAIYDVVQ---LVRADVSTVALGMSASTA 161 (293)
Q Consensus 92 fL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~-------ag~aIyd~I~---~~~~pV~tvv~G~AASag 161 (293)
...|..++..++...+.+..++.. .-+|+-+|||||..+. .+.+|...+. ....|+++++.|-|+|+|
T Consensus 218 rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGG 295 (762)
T PLN03229 218 RNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGG 295 (762)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 345566677777777777666553 4699999999998752 3445555555 456899999999999999
Q ss_pred HHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 162 SLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 162 ~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
++.++.|+. .+|.|++.+.+-.|-+ ...+.++ +.+...+..+ -.-+||++-
T Consensus 296 AlA~g~aD~--VlMle~A~~sVisPEg-------aAsILwk-------------------d~~~A~eAAe-~lkiTa~dL 346 (762)
T PLN03229 296 ALAIGCANK--LLMLENAVFYVASPEA-------CAAILWK-------------------SAKAAPKAAE-KLRITAQEL 346 (762)
T ss_pred HHHhhcCCE--EEEecCCeEEecCHHH-------HHHHHhc-------------------CcccHHHHHH-HcCCCHHHH
Confidence 999999986 8999999887765542 1111111 1111112122 244799999
Q ss_pred HHcCCceeecCC
Q 041849 242 VEYGIIDGVIDR 253 (293)
Q Consensus 242 le~GLID~I~~~ 253 (293)
+++|+||+|+..
T Consensus 347 ~~lGiiD~IIpE 358 (762)
T PLN03229 347 CRLQIADGIIPE 358 (762)
T ss_pred HhCCCCeeeccC
Confidence 999999999874
No 120
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.15 E-value=4.3e-05 Score=80.11 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=95.1
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSA------------------TMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~a------------------g~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++..+.|+|.=+ |-|+++.. +..+++.|..+++||++.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~ 110 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN 110 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677888999999998887665555554322 33445432 23466778889999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++|+. |++.+++.|++-....|.. -..... .. +.+..|. ....+++-.+.
T Consensus 111 G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~---Pg~Ggt----~r--------L~rliG~--~~A~~llltG~ 171 (714)
T TIGR02437 111 GIALGGGCECVLATDF--RIADDTAKIGLPETKLGIM---PGFGGT----VR--------LPRVIGA--DNALEWIASGK 171 (714)
T ss_pred CeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCC---CCccHH----HH--------HHHHhCH--HHHHHHHHcCC
Confidence 9999999999999996 9999999988755443321 110000 00 1111122 22334454577
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++++||+++||||+|...++
T Consensus 172 ~~~A~eA~~~GLvd~vv~~~~ 192 (714)
T TIGR02437 172 ENRAEDALKVGAVDAVVTADK 192 (714)
T ss_pred cCCHHHHHHCCCCcEeeChhH
Confidence 899999999999999987543
No 121
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.15 E-value=2.9e-05 Score=81.40 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=95.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe----CCCCCHHHH------------------HHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN----SPGGSLSAT------------------MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|..+++||++.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 678888899999988877655555554321 345555321 1245567788999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCc
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDR 234 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~ 234 (293)
|.|..+|.-|+++||. |++.++++|++-....|.. -+..... .+.+..| .....+++-.++
T Consensus 111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~---p~~g~~~------------~L~rlvG--~~~A~~llltG~ 171 (715)
T PRK11730 111 GYALGGGCECVLATDY--RVASPDARIGLPETKLGIM---PGFGGTV------------RLPRLIG--ADNALEWIAAGK 171 (715)
T ss_pred CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchHHH------------HHHHhcC--HHHHHHHHHcCC
Confidence 9999999999999996 9999999987755443321 1111000 0111122 223445555578
Q ss_pred ccCHHHHHHcCCceeecCCCC
Q 041849 235 YMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 235 ~lsa~EAle~GLID~I~~~~~ 255 (293)
.++|+||+++||||+|...++
T Consensus 172 ~~~A~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 172 DVRAEDALKVGAVDAVVAPEK 192 (715)
T ss_pred cCCHHHHHHCCCCeEecCHHH
Confidence 899999999999999997654
No 122
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.11 E-value=6e-05 Score=78.93 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=94.3
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSA----------------TMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~G 155 (293)
++..+.+.+...|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888889888888876554444444311 34455432 123567788899999999999
Q ss_pred chhhHHHHHhcCCCCCcEEEecce--eeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 041849 156 MSASTASLILGGGTKGKRFAMPNT--RVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233 (293)
Q Consensus 156 ~AASag~lIl~ag~kg~R~a~P~S--~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~ 233 (293)
.|..+|.-|+++||. |++.+++ +|++.....|.. -..... ..+.+..| .....+++-.+
T Consensus 111 ~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~---p~~gg~------------~~L~r~vG--~~~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLL---PGSGGT------------QRLPRLIG--VSTALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCC---CCccHH------------hHHHhhcC--HHHHHHHHHhC
Confidence 999999999999996 9999875 676665543321 110000 01111222 23344555567
Q ss_pred cccCHHHHHHcCCceeecCCCC
Q 041849 234 RYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 234 ~~lsa~EAle~GLID~I~~~~~ 255 (293)
..++++||+++||||++...++
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~~~ 193 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPHSI 193 (708)
T ss_pred CcCCHHHHHHCCCCcEecChHH
Confidence 8899999999999999998654
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.07 E-value=3.6e-05 Score=78.27 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=97.1
Q ss_pred eCHhHHHHHHHHHHHhh-hCCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHHhcCCCeEE
Q 041849 97 IDDFVADAIISQLLLLD-AQDPTKDIRLFVN-----SPGGSLSAT-------------------MAIYDVVQLVRADVST 151 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~-~~~~~~~I~L~IN-----SPGGsV~ag-------------------~aIyd~I~~~~~pV~t 151 (293)
++.++.+.+.+.|..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66778888888888887 4555555555432 567765431 1244556788999999
Q ss_pred EEccchhhHHHHHhcCCCCCcEEEecc--eeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHh
Q 041849 152 VALGMSASTASLILGGGTKGKRFAMPN--TRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKD 229 (293)
Q Consensus 152 vv~G~AASag~lIl~ag~kg~R~a~P~--S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~ 229 (293)
.+.|.|..+|.-|+++||- |++.++ ++|.+-... ..|-.-....... +............++
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~--~lGl~P~~gg~~~------------l~~~~~vg~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVP--LLGVLPGTGGLTR------------VTDKRRVRRDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchh--ccCcCCccchhhh------------ccccchhCHHHHHHH
Confidence 9999999999999999996 999886 566553221 0111111100000 000011122234444
Q ss_pred hcCCcccCHHHHHHcCCceeecCCCCC-----------CCCCCCCcCcC
Q 041849 230 IDRDRYMSPIEAVEYGIIDGVIDRDSI-----------IPLVPVPEKVK 267 (293)
Q Consensus 230 ~~~~~~lsa~EAle~GLID~I~~~~~~-----------~~~~~~p~~~~ 267 (293)
+-.++.++++||+++||||++...++. ....+.|..+|
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~~~~~~ 237 (546)
T TIGR03222 189 CTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDRPADAK 237 (546)
T ss_pred HHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCCCcCCC
Confidence 445678899999999999999886532 22456666655
No 124
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.98 E-value=0.00014 Score=66.61 Aligned_cols=132 Identities=19% Similarity=0.151 Sum_probs=85.8
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCC----------HHHHHHHHHHHHhc---CCCeEEEEccchhhHHHH
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGS----------LSATMAIYDVVQLV---RADVSTVALGMSASTASL 163 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGs----------V~ag~aIyd~I~~~---~~pV~tvv~G~AASag~l 163 (293)
++..-+......+.....++..-+|+..+|+||-. ..+.-.+..++... +.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 55555555555555532222457999999999954 34444444555544 499999999999999988
Q ss_pred HhcC-CCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC--CcccCHHH
Q 041849 164 ILGG-GTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR--DRYMSPIE 240 (293)
Q Consensus 164 Il~a-g~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~--~~~lsa~E 240 (293)
.+.. ++ ..|+.|++.+.+..|.+. ++.+.++.+++.+..+. ..-.+++.
T Consensus 125 amg~~ad--~v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQAD--RIIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcC--eEEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHH
Confidence 8853 55 499999999976655321 11111233334333322 23457888
Q ss_pred HHHcCCceeecCCCCC
Q 041849 241 AVEYGIIDGVIDRDSI 256 (293)
Q Consensus 241 Ale~GLID~I~~~~~~ 256 (293)
+.+.|+||+|++..+.
T Consensus 177 ~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 177 FVKLGGVHALLDVADA 192 (238)
T ss_pred HHhCCCccEEeCCCCc
Confidence 9999999999997553
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.92 E-value=0.00014 Score=76.56 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=91.3
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe------CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEc
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVN------SPGGSLSA----------------TMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN------SPGGsV~a----------------g~aIyd~I~~~~~pV~tvv~ 154 (293)
++..+.+.+.+.|..++.++.++.++| +. |-|+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677788888898888876554443333 33 33455432 22466778889999999999
Q ss_pred cchhhHHHHHhcCCCCCcEEEecce--eeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 041849 155 GMSASTASLILGGGTKGKRFAMPNT--RVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDR 232 (293)
Q Consensus 155 G~AASag~lIl~ag~kg~R~a~P~S--~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~ 232 (293)
|.|..+|.-|+++|+. |++.+++ .|++.....|.. -..... . .+.+..|. ....+++-.
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~---Pg~Ggt----~--------rLprliG~--~~A~~l~lt 177 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLL---PGAGGT----Q--------RLPKLTGV--PAALDMMLT 177 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCC---CCccHh----h--------hHHHhhCH--HHHHHHHHc
Confidence 9999999999999996 9999874 666655433321 010000 0 01111222 223345556
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 041849 233 DRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 233 ~~~lsa~EAle~GLID~I~~~ 253 (293)
+..++++||+++||||+|...
T Consensus 178 G~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 178 GKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CCcCCHHHHHHCCCCeEecCC
Confidence 788999999999999999875
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.81 E-value=0.00026 Score=72.16 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=91.5
Q ss_pred eCHhHHHHHHHHHHHhhhC-CCCCCeEEEEe-----CCCCCHH-----------HH----HHHHHHHHhcCCCeEEEE-c
Q 041849 97 IDDFVADAIISQLLLLDAQ-DPTKDIRLFVN-----SPGGSLS-----------AT----MAIYDVVQLVRADVSTVA-L 154 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~-~~~~~I~L~IN-----SPGGsV~-----------ag----~aIyd~I~~~~~pV~tvv-~ 154 (293)
++..+...+.+.+..++.+ +..+.|+|.=. |-|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 7778888888888888744 33333333221 2334431 11 125567888899999999 8
Q ss_pred cchhhHH-HHHhcCCCCCcEEE-------ecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-CCCHHH
Q 041849 155 GMSASTA-SLILGGGTKGKRFA-------MPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFT-GRSFEQ 225 (293)
Q Consensus 155 G~AASag-~lIl~ag~kg~R~a-------~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~t-g~~~e~ 225 (293)
|.|..+| .=|+++||- |++ .++++|++-....|..-...... .+.+.. |.....
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~---------------~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS---------------RLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHH---------------HHHHHhcCchhHH
Confidence 9999999 999999996 999 89999877665444221111100 122222 433332
Q ss_pred HHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 226 VQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 226 i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
-.+++-.+..++|+||+++|||+++.+.++
T Consensus 438 ~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~ 467 (546)
T TIGR03222 438 AAVRDKIGQALDAEEAERLGLVTAAPDDID 467 (546)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcccccCchH
Confidence 222333467889999999999999987654
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.75 E-value=0.00022 Score=72.22 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=95.1
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCC----------CHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGG----------SLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGG----------sV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
+|.++...++.+.+.+..+++. .-+|+..+||||- .+..+..+..++.....|+++++.|.|+++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~~--~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDAF--NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 5889999999988888776653 5799999999996 355666677777777899999999999999877
Q ss_pred HhcC----CCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHH
Q 041849 164 ILGG----GTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239 (293)
Q Consensus 164 Il~a----g~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 239 (293)
.+++ ++ ..++.|++.+++-.|.+.. .+. ..+++.+..+. ++ .-.+++.+..+ .+.++.
T Consensus 406 am~~~~~~~d--~~~a~p~a~~~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~---~~~~~~~~~~~--~~~~~~ 467 (512)
T TIGR01117 406 AMCSKHLGAD--QVYAWPTAEIAVMGPAGAA-----NII-FRKDIKEAKDP-----AA---TRKQKIAEYRE--EFANPY 467 (512)
T ss_pred HhccccCCCC--EEEEcCCCeEeecCHHHHH-----HHH-hhhhcccccCH-----HH---HHHHHHHHHHH--hhcCHH
Confidence 7764 44 4889999999888775311 000 00111000000 00 00112222222 355889
Q ss_pred HHHHcCCceeecCCCC
Q 041849 240 EAVEYGIIDGVIDRDS 255 (293)
Q Consensus 240 EAle~GLID~I~~~~~ 255 (293)
.|.+.|+||.|++-.+
T Consensus 468 ~~a~~g~vD~VI~P~~ 483 (512)
T TIGR01117 468 KAAARGYVDDVIEPKQ 483 (512)
T ss_pred HHHhcCCCCeeEChHH
Confidence 9999999999998654
No 128
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.57 E-value=0.00063 Score=69.44 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=89.3
Q ss_pred eeCHhHHHHHHHHHHHhhh-CCCCCCeEEEEe-----CCCCCHH-----------HH----HHHHHHHHhcCCCeEEEEc
Q 041849 96 NIDDFVADAIISQLLLLDA-QDPTKDIRLFVN-----SPGGSLS-----------AT----MAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 96 ~Id~~~a~~ii~qL~~l~~-~~~~~~I~L~IN-----SPGGsV~-----------ag----~aIyd~I~~~~~pV~tvv~ 154 (293)
.++..+...+.+.|..++. ++..+.|+|.=. |-|+++. .. ..++..|..+++||++.+.
T Consensus 298 al~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 377 (550)
T PRK08184 298 WWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIE 377 (550)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3677888888888888775 343444444221 3344421 10 1244567778899999997
Q ss_pred -cchhhHH-HHHhcCCCCCcEEEe-------cceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh-hCCCHH
Q 041849 155 -GMSASTA-SLILGGGTKGKRFAM-------PNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGF-TGRSFE 224 (293)
Q Consensus 155 -G~AASag-~lIl~ag~kg~R~a~-------P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~-tg~~~e 224 (293)
|.|..+| .-|+++||. |++. ++++|++-....|..-...... .+.+. .|....
T Consensus 378 ~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~---------------~L~r~~vG~~~A 440 (550)
T PRK08184 378 PGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLS---------------RLARRFYGEPDP 440 (550)
T ss_pred CCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHH---------------HhHHHhcChHHH
Confidence 9999999 999999996 9999 9999887665443221110000 01111 132211
Q ss_pred HHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 225 QVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 225 ~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.-..++-.+..++++||+++||||+|...++
T Consensus 441 ~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~ 471 (550)
T PRK08184 441 LAAVRAKIGQPLDADAAEELGLVTAAPDDID 471 (550)
T ss_pred HHHHHHHhCCcCCHHHHHHcCCcccccChHH
Confidence 1111112467889999999999999988654
No 129
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.44 E-value=0.0016 Score=66.74 Aligned_cols=152 Identities=16% Similarity=0.040 Sum_probs=93.2
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCC----------CHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGG----------SLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGG----------sV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
+|.++.+.++...+-+...+.. .-+|+..+|+||- .+..+..+..++.....|+.+++.|.|+.+|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQR--GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHhc--CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 5778888888776666655543 4699999999994 455566777777788899999999999999999
Q ss_pred HhcCC--CCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 164 ILGGG--TKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 164 Il~ag--~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
.+++. ..+..++.|++.+.+..|.+. . .+. ..+++.+..+.-.+.-.+....-.+++.+..+ ...++..|
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~e~a----a-~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~a 528 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGGAQA----A-GVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYS 528 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCHHHH----H-HHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHH
Confidence 98743 223478889999977655321 1 111 11111111110000000000000112223222 25578889
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
-+.|+||+|++-.+
T Consensus 529 a~~~~vD~VIdP~d 542 (569)
T PLN02820 529 TARLWDDGVIDPAD 542 (569)
T ss_pred HHcCCcCcccCHHH
Confidence 99999999998654
No 130
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.38 E-value=0.00022 Score=64.84 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 041849 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTR 213 (293)
Q Consensus 134 ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~ 213 (293)
....-+.+|..|++||++-+.|.|-.+|.=|..||+. ||+...+.|-+...-. |-+.|+.. ++++-+.
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDv---glaADvGT----L~Rlpkv--- 181 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDV---GLAADVGT----LNRLPKV--- 181 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeee---ehhhchhh----HhhhhHH---
Confidence 3345566778899999999999999999999999997 9999999998877654 33444432 2222221
Q ss_pred HHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCCC
Q 041849 214 IISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 256 (293)
Q Consensus 214 ~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~~ 256 (293)
.| +...+.++.-..+-|+|.||++.|||-+|.+..+.
T Consensus 182 -----VG-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ 218 (292)
T KOG1681|consen 182 -----VG-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEE 218 (292)
T ss_pred -----hc-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHH
Confidence 11 11234444444577899999999999999987653
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.34 E-value=0.0037 Score=59.04 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=86.5
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHH-------HHHHH---HhcCCCeEEEEccchhhHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMA-------IYDVV---QLVRADVSTVALGMSASTAS 162 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~a-------Iyd~I---~~~~~pV~tvv~G~AASag~ 162 (293)
++|.++...++.+.+.+..+... .-+++++.+|+|....++.. +..++ .....|.++++.|-|+.+++
T Consensus 133 ~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 133 MGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred ccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 48889999999999988877654 46899999999987666542 22233 23358999999999988877
Q ss_pred HHhc-CCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 163 LILG-GGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 163 lIl~-ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
+.++ .++. +++.|++.+++..|.. + .+.++ +++.+. +-+++-+
T Consensus 211 as~a~~~D~--iia~p~A~ig~aGprv---------------i-----------e~~~~---e~lpe~-----~~~ae~~ 254 (292)
T PRK05654 211 ASFAMLGDI--IIAEPKALIGFAGPRV---------------I-----------EQTVR---EKLPEG-----FQRAEFL 254 (292)
T ss_pred HHHHHcCCE--EEEecCcEEEecCHHH---------------H-----------Hhhhh---hhhhhh-----hcCHHHH
Confidence 6654 4774 8899999998875510 0 01111 111111 3367777
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
.+.|+||.|++..+
T Consensus 255 ~~~G~vD~Vv~~~e 268 (292)
T PRK05654 255 LEHGAIDMIVHRRE 268 (292)
T ss_pred HhCCCCcEEECHHH
Confidence 89999999998754
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.34 E-value=0.00062 Score=68.55 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=92.1
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----------GSLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG----------GsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
.|.++.+.++...+-+...+.. .-+|+...|+|| |.+..+-.+.+++..+..|+.+++.|.+.++|++
T Consensus 307 ~G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~ 384 (493)
T PF01039_consen 307 AGALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYY 384 (493)
T ss_dssp GGEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchh
Confidence 3789999988887776666653 459999999999 6678888999999999999999999999999888
Q ss_pred HhcCCCC--CcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 164 ILGGGTK--GKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 164 Il~ag~k--g~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
.+++... +..++.|++.+.+..|.+.. .+. ..+++......=.+ .++. ..+.+.+..+ ...++..|
T Consensus 385 am~~~~~~~~~~~Awp~a~~~vm~~e~a~-----~i~-~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~--~~~~~~~~ 452 (493)
T PF01039_consen 385 AMCGRGYGPDFVFAWPTAEIGVMGPEGAA-----SIL-YRDELEAAEAEGAD-PEAQ---RAEKIAEYED--ELSSPYRA 452 (493)
T ss_dssp HTTGGGGTTSEEEEETT-EEESS-HHHHH-----HHH-THHHHHHSCHCCHS-HHHH---HHHHHHHHHH--HHSSHHHH
T ss_pred hhcccccchhhhhhhhcceeeecChhhhh-----eee-ehhhhhhhhcccch-hHHH---HHHHHHHHHH--hcCCHHHH
Confidence 8876622 24889999999877664310 110 00111100000000 0000 1122222222 34579999
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
.+.|++|.|++-.+
T Consensus 453 a~~~~~D~ii~p~~ 466 (493)
T PF01039_consen 453 ASRGYVDDIIDPAE 466 (493)
T ss_dssp HHTTSSSEESSGGG
T ss_pred HhcCCCCCccCHHH
Confidence 99999999998754
No 133
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.32 E-value=0.0011 Score=62.09 Aligned_cols=107 Identities=20% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCCeEEEEeCCCCCH-------HHHHHHHHHHH---hcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeeccc
Q 041849 118 TKDIRLFVNSPGGSL-------SATMAIYDVVQ---LVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPM 187 (293)
Q Consensus 118 ~~~I~L~INSPGGsV-------~ag~aIyd~I~---~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~ 187 (293)
.-+|+.+||+||-.. ..+.+|..-+. .++.||+++|.|...|+|++-+..||+ -+|..||.+.+-.|-
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 469999999999442 23456665554 556899999999999999999999996 788899999888775
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCC
Q 041849 188 GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 188 ~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 253 (293)
+- ++ +.|+.-. +.. +..+. .-+++.+-+++||||.|+..
T Consensus 228 G~----As---ILWkD~~---------------ka~-eAAe~----mkita~dLk~lgiID~II~E 266 (317)
T COG0825 228 GC----AS---ILWKDAS---------------KAK-EAAEA----MKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred hh----hh---hhhcChh---------------hhH-HHHHH----cCCCHHHHHhCCCcceeccC
Confidence 41 11 1111111 111 12222 23689999999999999875
No 134
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.11 E-value=0.0058 Score=57.56 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=87.7
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHH-------HHHH---HHhcCCCeEEEEccchhhHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMA-------IYDV---VQLVRADVSTVALGMSASTAS 162 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~a-------Iyd~---I~~~~~pV~tvv~G~AASag~ 162 (293)
++|.+.....+.+.+.++.+... .-++++..+|+|.....+.. +... +.....|.++++.|-|+.+++
T Consensus 132 ~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 132 MGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred cCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 47888888999999988877654 46999999999987655542 2222 223358999999999988877
Q ss_pred HHhc-CCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCcccCHHHH
Q 041849 163 LILG-GGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241 (293)
Q Consensus 163 lIl~-ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 241 (293)
+.++ .++. +++.|++.+++..|. + +.+.++ +.+. +.+-+++=+
T Consensus 210 as~a~~~D~--iia~p~A~ig~aGpr---------V-----------------ie~ti~-------e~lp-e~~q~ae~~ 253 (285)
T TIGR00515 210 ASFAMLGDL--NIAEPKALIGFAGPR---------V-----------------IEQTVR-------EKLP-EGFQTSEFL 253 (285)
T ss_pred HHHHhCCCE--EEEECCeEEEcCCHH---------H-----------------HHHHhc-------Cccc-hhcCCHHHH
Confidence 7664 7775 899999999876552 0 111122 1111 124467778
Q ss_pred HHcCCceeecCCCC
Q 041849 242 VEYGIIDGVIDRDS 255 (293)
Q Consensus 242 le~GLID~I~~~~~ 255 (293)
.+.|+||.|++..+
T Consensus 254 ~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 254 LEHGAIDMIVHRPE 267 (285)
T ss_pred HhCCCCcEEECcHH
Confidence 89999999998754
No 135
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.96 E-value=0.006 Score=57.12 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCC---CCCCeEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEccc--hh
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQD---PTKDIRLFVNSPGGSLSATM-------AIYDVVQLVR--ADVSTVALGM--SA 158 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~---~~~~I~L~INSPGGsV~ag~-------aIyd~I~~~~--~pV~tvv~G~--AA 158 (293)
++|.+.+...+.+...++.+..++ ..-++++.++|.|+.+..+. .++..+..++ .|+++++.|- |+
T Consensus 71 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~ 150 (274)
T TIGR03133 71 QGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCF 150 (274)
T ss_pred cCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence 478888888899988888776421 23489999999999876644 3444444343 7999999999 88
Q ss_pred hHHHHHhcCCCCCcEEEecceeeeeeccc
Q 041849 159 STASLILGGGTKGKRFAMPNTRVMIHQPM 187 (293)
Q Consensus 159 Sag~lIl~ag~kg~R~a~P~S~imiH~p~ 187 (293)
.+++++++.|+. .+|.+++++++-.|.
T Consensus 151 GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 151 GGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred hHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 999999899985 899999999887763
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.77 E-value=0.0078 Score=57.07 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=72.1
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCC---CCCCeEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEccc--hh
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQD---PTKDIRLFVNSPGGSLSATM-------AIYDVVQLVR--ADVSTVALGM--SA 158 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~---~~~~I~L~INSPGGsV~ag~-------aIyd~I~~~~--~pV~tvv~G~--AA 158 (293)
++|.+.+...+.+...++.+.... ..-++++.++|.|+.+..+. .++..+..++ .|+++++.|- |+
T Consensus 80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~ 159 (301)
T PRK07189 80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCF 159 (301)
T ss_pred cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 488888888899988888765532 12689999999998865433 3444444444 7999999998 99
Q ss_pred hHHHHHhcCCCCCcEEEecceeeeeecc
Q 041849 159 STASLILGGGTKGKRFAMPNTRVMIHQP 186 (293)
Q Consensus 159 Sag~lIl~ag~kg~R~a~P~S~imiH~p 186 (293)
.+++++++.|+. .+|.+++++++-.|
T Consensus 160 GG~a~~a~l~D~--iIm~~~a~iglaGP 185 (301)
T PRK07189 160 GGMGIAAALCSY--LIVSEEGRLGLSGP 185 (301)
T ss_pred HHHHHHHhcCCE--EEEECCcEEeccCH
Confidence 999999999985 99999999988777
No 137
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.41 E-value=0.012 Score=53.52 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=90.6
Q ss_pred CHhHHHHHHHHHHHhhhCCCCCCeEEEEe-------CCCCC----------H-------HHHHHHHHHHHhcCCCeEEEE
Q 041849 98 DDFVADAIISQLLLLDAQDPTKDIRLFVN-------SPGGS----------L-------SATMAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 98 d~~~a~~ii~qL~~l~~~~~~~~I~L~IN-------SPGGs----------V-------~ag~aIyd~I~~~~~pV~tvv 153 (293)
.+.++..++..|..+..+..+.-|+|.=| |.||+ + -..+.+-..||.+++||++.|
T Consensus 44 rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V 123 (282)
T COG0447 44 RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMV 123 (282)
T ss_pred CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEE
Confidence 34567888888888887666655555544 33333 2 223456677999999999999
Q ss_pred ccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCH-HHHHHhhc
Q 041849 154 LGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS-GQVLDVEIQAREIMHNKDNFTRIISGFTGRSF-EQVQKDID 231 (293)
Q Consensus 154 ~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~-G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~-e~i~~~~~ 231 (293)
.|.|..+|-.+-..|+- -++..|++|+=..|..+.+ |-... . .+++..|+.. .+|.=+
T Consensus 124 ~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs-----~-----------ylar~VGqKkArEIwfL-- 183 (282)
T COG0447 124 AGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGS-----S-----------YLARIVGQKKAREIWFL-- 183 (282)
T ss_pred eeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccH-----H-----------HHHHHhhhhhhHHhhhh--
Confidence 99999999999999985 6788899998777764421 11110 0 1112222211 123222
Q ss_pred CCcccCHHHHHHcCCceeecCCCC
Q 041849 232 RDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 232 ~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.+-++|+||++.|+|..|...++
T Consensus 184 -cR~Y~A~eal~MGlVN~Vvp~~~ 206 (282)
T COG0447 184 -CRQYDAEEALDMGLVNTVVPHAD 206 (282)
T ss_pred -hhhccHHHHHhcCceeeeccHHH
Confidence 24569999999999999987654
No 138
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.32 E-value=0.0093 Score=54.05 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCC--------------------HHHHHHHHHHHHhcCCCeEEEEccchhhH
Q 041849 101 VADAIISQLLLLDAQDPTKDIRLFVNSPGGS--------------------LSATMAIYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 101 ~a~~ii~qL~~l~~~~~~~~I~L~INSPGGs--------------------V~ag~aIyd~I~~~~~pV~tvv~G~AASa 160 (293)
+.+.+.+.|..+..+++..-|.|+=-+||=- |..-..+++.|..++.||++-+.|.|-.+
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 4455666666677766666666666667721 44455778888899999999999999999
Q ss_pred HHHHhcCCCCCcEEEecceeeeeecccC----CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc
Q 041849 161 ASLILGGGTKGKRFAMPNTRVMIHQPMG----GASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236 (293)
Q Consensus 161 g~lIl~ag~kg~R~a~P~S~imiH~p~~----~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l 236 (293)
|-=++++||. |++..++.+++-.... |..|.- -+ - +..|. ...++++-..+.|
T Consensus 139 GLElALACDi--Rva~s~akmGLvET~laiiPGaGGtQ-RL-------p-----------R~vg~--alaKELIftarvl 195 (291)
T KOG1679|consen 139 GLELALACDI--RVAASSAKMGLVETKLAIIPGAGGTQ-RL-------P-----------RIVGV--ALAKELIFTARVL 195 (291)
T ss_pred chhhhhhccc--eehhhhccccccccceeeecCCCccc-hh-------H-----------HHHhH--HHHHhHhhhheec
Confidence 9999999997 9999998887655321 223321 11 0 01111 1234555557899
Q ss_pred CHHHHHHcCCceeecCCCC
Q 041849 237 SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 237 sa~EAle~GLID~I~~~~~ 255 (293)
++.||.++|||.++.+..+
T Consensus 196 ~g~eA~~lGlVnhvv~qne 214 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNE 214 (291)
T ss_pred cchhHHhcchHHHHHhcCc
Confidence 9999999999999988764
No 139
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.94 E-value=0.079 Score=48.50 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=78.9
Q ss_pred hCCCCCCeEEEEeCCC---CCHHHHHHH----------HHHHHhcCCCeEEEEccchhhHHHHHh-cCCCCCcEEEecce
Q 041849 114 AQDPTKDIRLFVNSPG---GSLSATMAI----------YDVVQLVRADVSTVALGMSASTASLIL-GGGTKGKRFAMPNT 179 (293)
Q Consensus 114 ~~~~~~~I~L~INSPG---GsV~ag~aI----------yd~I~~~~~pV~tvv~G~AASag~lIl-~ag~kg~R~a~P~S 179 (293)
.+.+..+|++.+++|| |.-++.+.| |+.-|..+.||++.+.|.|+|+|.+-. +.++. .|+.|++
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~ga 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALPGA 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCCCC
Confidence 4456789999999999 444444444 444466678999999999999886544 34453 8888844
Q ss_pred eeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCccc--CHHHHHHcCCceeecCCCC
Q 041849 180 RVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM--SPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 180 ~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~~~~~~~~l--sa~EAle~GLID~I~~~~~ 255 (293)
. +|- + + ....++.|.++.|+++++...--.| ..+--.++|.++++.+.+.
T Consensus 138 ~--i~v-M--------~---------------~~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~~~ 189 (234)
T PF06833_consen 138 M--IHV-M--------G---------------KPSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWDGDL 189 (234)
T ss_pred e--eec-C--------C---------------hHHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcccc
Confidence 3 341 0 0 1235667889999999887665444 4566678899999988543
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.16 E-value=0.13 Score=53.02 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=67.4
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHH----------HHHHHHHHH-Hhc--CCCeEEEEccchhh
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS----------ATMAIYDVV-QLV--RADVSTVALGMSAS 159 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~----------ag~aIyd~I-~~~--~~pV~tvv~G~AAS 159 (293)
++|.+.....+.+.+.+..+.+. .-+|+..++|+|+.+. ..-.|+..+ +.+ ..|.++++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~--~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQC--RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 37888888999998888876654 4699999999998761 112344442 323 47999999999999
Q ss_pred HHHHHhcCCCCCcEEEe-cceeeeeecc
Q 041849 160 TASLILGGGTKGKRFAM-PNTRVMIHQP 186 (293)
Q Consensus 160 ag~lIl~ag~kg~R~a~-P~S~imiH~p 186 (293)
+|+++.+.++. .++. +++.+.+-.|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999887775 5555 5788888776
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.40 E-value=0.17 Score=51.33 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=69.5
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEccchhhHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----------GSLSATMAIYDVVQLVRADVSTVALGMSASTAS 162 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG----------GsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~ 162 (293)
++|.|+.+.++.-.+-+ .+.... .=+|++..|.|| |-+.-|-.|..++-.+..|..|++.+.++.+|+
T Consensus 336 ~~G~l~~~sa~KaArFI-~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFI-RLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHH-Hhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 37788888877654444 444332 458999999999 556778889999999999999999999999998
Q ss_pred HHhcCCCCC--cEEEecceeeeeeccc
Q 041849 163 LILGGGTKG--KRFAMPNTRVMIHQPM 187 (293)
Q Consensus 163 lIl~ag~kg--~R~a~P~S~imiH~p~ 187 (293)
+.+++..-+ .-|+.|++++.+..|.
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~e 440 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGPE 440 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCHH
Confidence 887754332 2566688888766543
No 142
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=94.18 E-value=0.27 Score=46.57 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=67.6
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHH----H---H----HHHHHhcCCCeEEEEccchhhHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM----A---I----YDVVQLVRADVSTVALGMSASTA 161 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~----a---I----yd~I~~~~~pV~tvv~G~AASag 161 (293)
++|.+.....+.+.+.++.+... .-++++...|-|+.+..+. + + ....+.-..|.++++.|-|+.++
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~ 222 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGV 222 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence 47778888889999988877654 4689999999998765544 2 2 21122345799999999988888
Q ss_pred HHHhcC-CCCCcEEEecceeeeeeccc
Q 041849 162 SLILGG-GTKGKRFAMPNTRVMIHQPM 187 (293)
Q Consensus 162 ~lIl~a-g~kg~R~a~P~S~imiH~p~ 187 (293)
++.++. |+. +++.|++.+++..|.
T Consensus 223 aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 223 TASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 877664 885 788899999887663
No 143
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=93.47 E-value=0.31 Score=44.03 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 041849 137 AIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIIS 216 (293)
Q Consensus 137 aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya 216 (293)
.+.+.||.++.||.+-|.|.|+-+|.-+.++|+. -++..+|.|..-....|.+-..-.+. +.+.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-----laRa--------- 179 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-----LARA--------- 179 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-----Hhhh---------
Confidence 4566688999999999999999999999999985 66777777643222222221221111 1110
Q ss_pred HhhCCCHHHHHHhhcCCcccCHHHHHHcCCceeecCCCC
Q 041849 217 GFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255 (293)
Q Consensus 217 ~~tg~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~~ 255 (293)
.+......++-.+.-++++||+-.|++.++...++
T Consensus 180 ----vpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 180 ----VPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEE 214 (287)
T ss_pred ----cchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHH
Confidence 11122222333356678999999999998887654
No 144
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=93.33 E-value=0.66 Score=43.11 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=81.4
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC------CCHH----------------HHHH------HHHHHHhcCCC
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG------GSLS----------------ATMA------IYDVVQLVRAD 148 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG------GsV~----------------ag~a------Iyd~I~~~~~p 148 (293)
++.++...+.+.|..++.++.+ ....+.|-| ++.. .... ..++...+++|
T Consensus 32 l~~e~y~~i~~al~~a~~dds~--~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kp 109 (266)
T KOG0016|consen 32 LNREDYVYIQRALEEANDDDSV--SITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKP 109 (266)
T ss_pred ccHHHHHHHHHHHHHhhcccce--EEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCC
Confidence 6667888898888877765433 444555554 2211 1111 55677788999
Q ss_pred eEEEEccchhhHHHHHhcCCCCCcEEEecceeeeeecccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Q 041849 149 VSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQK 228 (293)
Q Consensus 149 V~tvv~G~AASag~lIl~ag~kg~R~a~P~S~imiH~p~~~~~G~~~dl~~~~~el~~~~~~i~~~ya~~tg~~~e~i~~ 228 (293)
+++.+.|=|-.-|..|+.-+|- -|+. =...+|.|+... |+..|--... .+-+..| .+...+
T Consensus 110 lia~vNGPAIGlgasil~lcD~--V~A~--Dka~F~TPfa~l-Gq~PEG~Ss~------------t~p~imG--~~~A~E 170 (266)
T KOG0016|consen 110 LVALVNGPAIGLGASILPLCDY--VWAS--DKAWFQTPFAKL-GQSPEGCSSV------------TLPKIMG--SASANE 170 (266)
T ss_pred EEEEecCCccchhhHHhhhhhe--EEec--cceEEeccchhc-CCCCCcceee------------eehHhhc--hhhHHH
Confidence 9999999999988888888884 4554 334456776421 2111100000 0000011 112233
Q ss_pred hhcCCcccCHHHHHHcCCceeecCC
Q 041849 229 DIDRDRYMSPIEAVEYGIIDGVIDR 253 (293)
Q Consensus 229 ~~~~~~~lsa~EAle~GLID~I~~~ 253 (293)
++=-+.-|+|+||.+.|||++|...
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcCh
Confidence 3333577899999999999999875
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=92.49 E-value=0.61 Score=47.47 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=68.8
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHH-------HHHHH-HHh-cCCCeEEEEccchhhHHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM-------AIYDV-VQL-VRADVSTVALGMSASTASL 163 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~-------aIyd~-I~~-~~~pV~tvv~G~AASag~l 163 (293)
++|.+.....+.+++.++.+.++ .-+++.+++|-|+.+..+. .++.. .+. -..|+++++.|-|+.++++
T Consensus 94 ~gGS~g~~~~~K~~r~~e~A~~~--~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~ 171 (512)
T TIGR01117 94 MGGSLGEMHAAKIVKIMDLAMKM--GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVY 171 (512)
T ss_pred cccCCCHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHH
Confidence 47888888899999888877654 4689999999998864432 22322 222 2479999999999999999
Q ss_pred HhcCCCCCcEEEecc-eeeeeeccc
Q 041849 164 ILGGGTKGKRFAMPN-TRVMIHQPM 187 (293)
Q Consensus 164 Il~ag~kg~R~a~P~-S~imiH~p~ 187 (293)
.++.|+. .+|.++ +.+++-.|.
T Consensus 172 ~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 172 SPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHhcCc--eEEeccceEEEecChH
Confidence 9999986 889996 467777663
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=90.30 E-value=0.46 Score=47.98 Aligned_cols=90 Identities=12% Similarity=0.218 Sum_probs=65.9
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCC--CHHHHH-------HHHHHHHhc--CCCeEEEEccchhhHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGG--SLSATM-------AIYDVVQLV--RADVSTVALGMSASTAS 162 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGG--sV~ag~-------aIyd~I~~~--~~pV~tvv~G~AASag~ 162 (293)
+|.+.+...+.+.+.+..+... .-+++.+++|.|+ ....++ .++..+..+ ..|+++++.|-|..+++
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A 147 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGA 147 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGG
T ss_pred cCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchh
Confidence 7778888899998888877654 4688888999999 322221 233333222 57999999999999998
Q ss_pred HHhcCCCCCcEEEecc-eeeeeeccc
Q 041849 163 LILGGGTKGKRFAMPN-TRVMIHQPM 187 (293)
Q Consensus 163 lIl~ag~kg~R~a~P~-S~imiH~p~ 187 (293)
++++.++. .++.++ +.+++..|.
T Consensus 148 ~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 148 YLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp HHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hcccccCc--cccCccceEEEecccc
Confidence 88888885 778886 999887764
No 147
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=89.91 E-value=1.9 Score=38.56 Aligned_cols=72 Identities=25% Similarity=0.321 Sum_probs=53.2
Q ss_pred eCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh------------------------cCCCeEE
Q 041849 97 IDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL------------------------VRADVST 151 (293)
Q Consensus 97 Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~------------------------~~~pV~t 151 (293)
.+....+.+.+.|..+...+ .+.++|.+ +.+||++..+..|...+-. ...||++
T Consensus 58 f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvV 136 (211)
T cd07560 58 FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVV 136 (211)
T ss_pred cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEE
Confidence 34556677777777776543 68899998 7889999999888876532 3457888
Q ss_pred EEccchhhHHHHHhcCCC
Q 041849 152 VALGMSASTASLILGGGT 169 (293)
Q Consensus 152 vv~G~AASag~lIl~ag~ 169 (293)
.+.+..+|+|=+++++-.
T Consensus 137 Lvn~~TaSaaE~~a~~lk 154 (211)
T cd07560 137 LVNGGSASASEIVAGALQ 154 (211)
T ss_pred EeCCCcccHHHHHHHHHh
Confidence 888888888877776543
No 148
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=89.55 E-value=2 Score=38.07 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=55.2
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh--------------------------cC
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL--------------------------VR 146 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~--------------------------~~ 146 (293)
.....+...+.+.+.+..+.+ +.+.++|.+ +-+||++..+..|.+.+-. ..
T Consensus 67 ~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (224)
T cd06567 67 PSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYD 144 (224)
T ss_pred CccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccC
Confidence 433335566777777776665 578999999 8899999999999988753 23
Q ss_pred CCeEEEEccchhhHHHHHhcCC
Q 041849 147 ADVSTVALGMSASTASLILGGG 168 (293)
Q Consensus 147 ~pV~tvv~G~AASag~lIl~ag 168 (293)
.||.+.+.+.++|+|=+++.+-
T Consensus 145 ~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 145 GPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred CCEEEEECCCCccHHHHHHHHH
Confidence 5888899999999998877654
No 149
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=87.90 E-value=2.6 Score=40.13 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=56.6
Q ss_pred cEEEEc-ceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh----------------------
Q 041849 89 RIVFLG-NNIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL---------------------- 144 (293)
Q Consensus 89 riifL~-G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~---------------------- 144 (293)
+|.+|. ........+.+.+.|..++.. +.+.++|.+ +.+||++..+..+...+-.
T Consensus 152 ~igYi~i~~f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~ 230 (334)
T TIGR00225 152 SVGYIRISSFSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGR 230 (334)
T ss_pred EEEEEEEEecccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCC
Confidence 466651 123445667788888777654 478899999 8899999999999887631
Q ss_pred --cCCCeEEEEccchhhHHHHHhcCCC
Q 041849 145 --VRADVSTVALGMSASTASLILGGGT 169 (293)
Q Consensus 145 --~~~pV~tvv~G~AASag~lIl~ag~ 169 (293)
...||++.+.+..||+|=+++.+-.
T Consensus 231 ~~~~~pv~vLvn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 231 QPYNLPLVVLVNRGSASASEIFAGALQ 257 (334)
T ss_pred ccCCCCEEEEECCCCCcHHHHHHHHHH
Confidence 2347777778888888777766543
No 150
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=86.03 E-value=4.8 Score=37.20 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=42.3
Q ss_pred cCcEEEE--cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh
Q 041849 87 KERIVFL--GNNIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL 144 (293)
Q Consensus 87 ~~riifL--~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~ 144 (293)
.++|.+| .. ......+.+.+.+..++++ ..+.++|.+ +-+||.+..+..|.+.+-.
T Consensus 63 ~~~IGYi~i~~-F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 63 GKKVGYLVYNS-FTSGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred CCcEEEEEECc-cccchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 3456665 33 3334667888888888765 478899999 8899999999999998875
No 151
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=85.79 E-value=4.3 Score=39.72 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=54.0
Q ss_pred CcEEEEc-ceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHhc--------------------
Q 041849 88 ERIVFLG-NNIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQLV-------------------- 145 (293)
Q Consensus 88 ~riifL~-G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~~-------------------- 145 (293)
++|.+|. ...+...++.+.+.|..+..++ .+.++|.+ +-|||.+..+..|.+.+..-
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 4676662 2234456778888888877653 78899999 88999999999998887321
Q ss_pred ------CCCeEEEEccchhhHHHHHhc
Q 041849 146 ------RADVSTVALGMSASTASLILG 166 (293)
Q Consensus 146 ------~~pV~tvv~G~AASag~lIl~ 166 (293)
..|+++.+.+..||++=+++.
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHH
Confidence 135666666666666655554
No 152
>PRK11186 carboxy-terminal protease; Provisional
Probab=84.54 E-value=4.5 Score=42.63 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=57.8
Q ss_pred CcEEEEcc-eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHH----------------------
Q 041849 88 ERIVFLGN-NIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQ---------------------- 143 (293)
Q Consensus 88 ~riifL~G-~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~---------------------- 143 (293)
++|.+|.= .......+.+.+.|..+..+ +.++++|.+ |-|||++..+..|...+-
T Consensus 353 ~kIGYI~I~sF~~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~ 431 (667)
T PRK11186 353 EKVGVLDIPGFYVGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTD 431 (667)
T ss_pred CcEEEEEecccccchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCC
Confidence 45655521 12334567788888877764 488999999 889999999999988742
Q ss_pred ---hcCCCeEEEEccchhhHHHHHhcC
Q 041849 144 ---LVRADVSTVALGMSASTASLILGG 167 (293)
Q Consensus 144 ---~~~~pV~tvv~G~AASag~lIl~a 167 (293)
....|+++.+.+..|||+=+++.+
T Consensus 432 ~~~~~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 432 GVVYYKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred cccccCCCEEEEeCCCCccHHHHHHHH
Confidence 113488999999999999887764
No 153
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=81.01 E-value=9.1 Score=36.07 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=60.7
Q ss_pred EEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHH----H---H---HHHHHhcCCCeEEEE-----ccc
Q 041849 92 FLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM----A---I---YDVVQLVRADVSTVA-----LGM 156 (293)
Q Consensus 92 fL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~----a---I---yd~I~~~~~pV~tvv-----~G~ 156 (293)
|++|-+...+.+.|++.++++-.+ ..+++++--|-|-..-.|+ + + ...++..+.|+++|. +|+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 456777777789999999987653 4677777777665544332 2 2 223445567888776 567
Q ss_pred hhhHHHHHhcCCCCCcEEEecceeeeeeccc
Q 041849 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPM 187 (293)
Q Consensus 157 AASag~lIl~ag~kg~R~a~P~S~imiH~p~ 187 (293)
.||-| +-|+. .++.|.+.|++..|.
T Consensus 211 sASfA----~lGDi--~iAEP~AlIGFAGpR 235 (294)
T COG0777 211 SASFA----MLGDI--IIAEPGALIGFAGPR 235 (294)
T ss_pred hHhHH----hccCe--eecCcccccccCcch
Confidence 77655 55775 889999999988775
No 154
>smart00245 TSPc tail specific protease. tail specific protease
Probab=80.71 E-value=13 Score=32.49 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=53.9
Q ss_pred CcEEEEc-ceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHhc--------------------
Q 041849 88 ERIVFLG-NNIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQLV-------------------- 145 (293)
Q Consensus 88 ~riifL~-G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~~-------------------- 145 (293)
++|.++. ...+..+.+.+.+.+..+... +.+.++|.+ +.+||.+..+..+.+.+..-
T Consensus 28 ~~igYi~i~~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 106 (192)
T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPAN 106 (192)
T ss_pred CcEEEEEEeEEChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecC
Confidence 4565552 234444566777777777654 478899999 67999999999998887321
Q ss_pred -----CCCeEEEEccchhhHHHHHhcCC
Q 041849 146 -----RADVSTVALGMSASTASLILGGG 168 (293)
Q Consensus 146 -----~~pV~tvv~G~AASag~lIl~ag 168 (293)
..||++.+.+..||+|=+++.+-
T Consensus 107 ~~~~~~~pv~vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 107 LGRKYSKPLVVLVNEGTASASEIFAGAL 134 (192)
T ss_pred CCcccCCCEEEEECCCCeeHHHHHHHHH
Confidence 13566667777777776666543
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=80.05 E-value=7.5 Score=38.45 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=59.9
Q ss_pred EEEEcc-eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh-----------------------
Q 041849 90 IVFLGN-NIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL----------------------- 144 (293)
Q Consensus 90 iifL~G-~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~----------------------- 144 (293)
|.+|.= .-++...+.+...|..++++. .++++|.+ |-|||...++..+.+....
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc
Confidence 666521 234455677788888888765 89999999 8899999999999988641
Q ss_pred --cCCCeEEEEccchhhHHHHHhcCCC
Q 041849 145 --VRADVSTVALGMSASTASLILGGGT 169 (293)
Q Consensus 145 --~~~pV~tvv~G~AASag~lIl~ag~ 169 (293)
...|+++.+.+..|||+=+++.+-.
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred cCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1368899999999999887776543
No 156
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=78.98 E-value=4.6 Score=34.76 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=28.1
Q ss_pred EcceeCHhHHHHHHHHHHHh-hhCCCCCCeEEEEeCCCCCHHH
Q 041849 93 LGNNIDDFVADAIISQLLLL-DAQDPTKDIRLFVNSPGGSLSA 134 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l-~~~~~~~~I~L~INSPGGsV~a 134 (293)
+.|.|+-.-++.+.+.+-.+ .-..+.+.|+|++-||||-|.+
T Consensus 105 F~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 105 FKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVHG 147 (155)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceeec
Confidence 38999877665554443321 2223458999999999998743
No 157
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=78.81 E-value=6.2 Score=32.83 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHH---------------h--------------cCCCe
Q 041849 100 FVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQ---------------L--------------VRADV 149 (293)
Q Consensus 100 ~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~---------------~--------------~~~pV 149 (293)
...+.+.+.+..+.. ...+.++|.| +.+||+...+..+...+. . ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 445566666666654 3478999999 889999999999888773 1 33578
Q ss_pred EEEEccchhhHHHHHhcCC
Q 041849 150 STVALGMSASTASLILGGG 168 (293)
Q Consensus 150 ~tvv~G~AASag~lIl~ag 168 (293)
..++.+.|+|+|-+++.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHH
Confidence 8999999999998887644
No 158
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=78.24 E-value=8.1 Score=37.78 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=66.7
Q ss_pred cCcEEEEcce-----eCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-----CCCCCHHHHH-------------------H
Q 041849 87 KERIVFLGNN-----IDDFVADAIISQLLLLDAQDPTKDIRLFVN-----SPGGSLSATM-------------------A 137 (293)
Q Consensus 87 ~~riifL~G~-----Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-----SPGGsV~ag~-------------------a 137 (293)
..|++.|+-+ ++-++...+...|..++..+..+-|+|-=+ |-||+|.+.- .
T Consensus 47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684|consen 47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred ceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3578887654 777888888889998887655543333323 4578865332 2
Q ss_pred HHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEE-------ecceeeeeec
Q 041849 138 IYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFA-------MPNTRVMIHQ 185 (293)
Q Consensus 138 Iyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a-------~P~S~imiH~ 185 (293)
+...|-.+.+|+++++.|+.+.+|.=+...|.- |++ +|..-|++|.
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~AmPEt~IGlfP 179 (401)
T KOG1684|consen 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVFAMPETGIGLFP 179 (401)
T ss_pred HHHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccceeccccccccccc
Confidence 233455677999999999999999888887763 655 5655566664
No 159
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=76.85 E-value=21 Score=36.02 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=58.7
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----------GSLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPG----------GsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
+|-++.+++.....-+++..+. .=++++..|++| |-+..|-.+..+....+.|.+|+..|-+..+.|-
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q~--~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~ 439 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQR--NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYA 439 (536)
T ss_pred ccccchhhhhhhHHHHHHHHhc--CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCccc
Confidence 4777777777766655554442 468999999998 2233444555666667789999998888874433
Q ss_pred Hh---cCCCCCcEEEecceeeeee
Q 041849 164 IL---GGGTKGKRFAMPNTRVMIH 184 (293)
Q Consensus 164 Il---~ag~kg~R~a~P~S~imiH 184 (293)
+. ..++. .|+.|+++|.+.
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 11 24554 788999999765
No 160
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=73.12 E-value=19 Score=33.10 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=51.1
Q ss_pred hhccCcEEEEcc-eeCHhHHHHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh-----------------
Q 041849 84 LLLKERIVFLGN-NIDDFVADAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL----------------- 144 (293)
Q Consensus 84 ~l~~~riifL~G-~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~----------------- 144 (293)
.+..++|.+|.= .......+.+.+.+... ...+.++|.+ +-+||++.. .|.+.+..
T Consensus 83 ~~~~~~igYi~i~~~~~~~~~~~~~~~~~~---~~~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~ 157 (266)
T cd07562 83 ELSDGRIGYVHIPDMGDDGFAEFLRDLLAE---VDKDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTY 157 (266)
T ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHHHhc---CCCceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCC
Confidence 344578877631 22444455555555432 2278999999 678888433 44444321
Q ss_pred ----cCCCeEEEEccchhhHHHHHhcCCC
Q 041849 145 ----VRADVSTVALGMSASTASLILGGGT 169 (293)
Q Consensus 145 ----~~~pV~tvv~G~AASag~lIl~ag~ 169 (293)
...||.+.+.+.++|+|-+++.+..
T Consensus 158 p~~~~~~pv~vL~~~~t~SaaE~~a~~lk 186 (266)
T cd07562 158 PSGRWRGPVVVLVNEGSASDAEIFAYGFR 186 (266)
T ss_pred cccccCCCEEEEECCCCCchHHHHHHHHH
Confidence 3468999999999999988877543
No 161
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=72.19 E-value=21 Score=32.35 Aligned_cols=63 Identities=16% Similarity=-0.005 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHh---------------------------------cCCC
Q 041849 103 DAIISQLLLLDAQDPTKDIRLFV-NSPGGSLSATMAIYDVVQL---------------------------------VRAD 148 (293)
Q Consensus 103 ~~ii~qL~~l~~~~~~~~I~L~I-NSPGGsV~ag~aIyd~I~~---------------------------------~~~p 148 (293)
+.+-+.+..+.. .+.++|.+ +.+||+...+..|...+-. ...|
T Consensus 83 ~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 159 (250)
T cd07563 83 ALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKP 159 (250)
T ss_pred HHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCC
Confidence 444444444443 37899988 7789999988888888751 1236
Q ss_pred eEEEEccchhhHHHHHhcCC
Q 041849 149 VSTVALGMSASTASLILGGG 168 (293)
Q Consensus 149 V~tvv~G~AASag~lIl~ag 168 (293)
|++.+.+.++|+|-.++++.
T Consensus 160 v~vL~~~~T~SaaE~~a~~l 179 (250)
T cd07563 160 VYVLTSPVTFSAAEEFAYAL 179 (250)
T ss_pred EEEEeCCCcCcHHHHHHHHH
Confidence 77777777777776666544
No 162
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=66.28 E-value=15 Score=37.60 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=65.1
Q ss_pred cceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH--------HHHHHHHHHhcC-CCeEEEEccchhhHHHHH
Q 041849 94 GNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA--------TMAIYDVVQLVR-ADVSTVALGMSASTASLI 164 (293)
Q Consensus 94 ~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a--------g~aIyd~I~~~~-~pV~tvv~G~AASag~lI 164 (293)
+|...+...+.+++....+..+ ..+++...+|-|+.+.. |.-.|+..+.+. .|.++++.|-|+.+|+|+
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~~~--g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~ 181 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAIEN--GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYS 181 (526)
T ss_pred cccccccccchHHHHHHHHHHc--CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCccccccc
Confidence 5666666778887776665543 45777777888866543 445566666665 699999999999999999
Q ss_pred hcCCCCCcEEEecc-eeeeeecc
Q 041849 165 LGGGTKGKRFAMPN-TRVMIHQP 186 (293)
Q Consensus 165 l~ag~kg~R~a~P~-S~imiH~p 186 (293)
-.-++. .+|..+ +.+.+..|
T Consensus 182 pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 182 PALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred ccccce--EEEEcCCccEEeeCH
Confidence 999986 777777 66666655
No 163
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=55.31 E-value=84 Score=24.03 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=44.0
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEE------EeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLF------VNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~------INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
++.+.|+++-..++.+.+++..+-...+.+.++|. |||.| +.+-..++..++..+ +..+..|......-.
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg--i~~L~~~~~~~~~~g--~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG--LGVILGRYKKIKNEG--GEVIVCNVSPAVKRL 86 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH--HHHHHHHHHHHHHcC--CEEEEEeCCHHHHHH
Confidence 55689999999999999998765433334566663 33333 122223344444433 444555665555555
Q ss_pred HhcCC
Q 041849 164 ILGGG 168 (293)
Q Consensus 164 Il~ag 168 (293)
+-.+|
T Consensus 87 l~~~g 91 (106)
T TIGR02886 87 FELSG 91 (106)
T ss_pred HHHhC
Confidence 55554
No 164
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=53.25 E-value=38 Score=32.22 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=50.1
Q ss_pred cEEEEcce--eCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchh
Q 041849 89 RIVFLGNN--IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~--Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AA 158 (293)
++|-+++. .|- .+.+-|.++..++..+.|.||+-+-|-.+..+..+.++.+. ++||+++..|..+
T Consensus 179 ~~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 34556666 443 34566778888888999999999988888888888887654 7999999988875
No 165
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=51.69 E-value=46 Score=31.61 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEEEecceee
Q 041849 103 DAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM-AIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181 (293)
Q Consensus 103 ~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~-aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~a~P~S~i 181 (293)
..+++.|..++.+ +....++.|.=.||...+-. ..+.. +..++||++++.|..| .+|+|...-.|++
T Consensus 186 t~fid~L~~fe~D-p~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkrmGhaGaiv 253 (293)
T COG0074 186 TSFIDALEMFEAD-PETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKRMGHAGAIV 253 (293)
T ss_pred ccHHHHHHHHhcC-ccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccchhhhhhhhh
Confidence 4567777777765 46678888999999865432 22233 4455999999999988 5566666656555
No 166
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=51.33 E-value=92 Score=22.91 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=51.0
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeC-CCCCHHHHHHHHHHHHhcC-CCeEEEEccchhhHHHHHhc
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNS-PGGSLSATMAIYDVVQLVR-ADVSTVALGMSASTASLILG 166 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INS-PGGsV~ag~aIyd~I~~~~-~pV~tvv~G~AASag~lIl~ 166 (293)
.++.+.|+++-..++.+.+++.....+. .+.|.|.+.. +.=+..+...|....+.++ ..+...+.|......-++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4566799999999999988887665432 4566665533 2233455556666666665 35666666776666666655
Q ss_pred CC
Q 041849 167 GG 168 (293)
Q Consensus 167 ag 168 (293)
+|
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 55
No 167
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=51.15 E-value=45 Score=28.39 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=26.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 123 LFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 123 L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
+.|| ||+..-.+.+|.|+|+....|++=+-.
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEVHl 100 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEVHL 100 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEEEe
Confidence 6666 999999999999999999999776554
No 168
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=49.22 E-value=1.2e+02 Score=23.29 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEe-CCCCCHHHHHHHHHHHHhcC-CCeEEEEccchhhHHHHHhcC
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVN-SPGGSLSATMAIYDVVQLVR-ADVSTVALGMSASTASLILGG 167 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~IN-SPGGsV~ag~aIyd~I~~~~-~pV~tvv~G~AASag~lIl~a 167 (293)
++.+.|+++...++.+.+.+...-.+...+.++|.+. .+-=+..+...+.+..+.++ ..+..++.|+-....-.+-.+
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh
Confidence 4567999999999999888754333233455666442 12222333344444444443 335556666666665555555
Q ss_pred C
Q 041849 168 G 168 (293)
Q Consensus 168 g 168 (293)
|
T Consensus 93 g 93 (109)
T cd07041 93 G 93 (109)
T ss_pred C
Confidence 4
No 169
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=49.11 E-value=1.1e+02 Score=23.19 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=40.8
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEE------EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHH
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRL------FVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASL 163 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L------~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~l 163 (293)
++.+.|.++-..+..+.+.|..+......+.|+| +|||-| +..=..+++.++.. .+..++.|.-....-+
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg--l~~L~~~~~~~~~~--~~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG--LGVLLGRYKQVRRV--GGQLVLVSVSPRVARL 90 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc--HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 4557999999999999888877654334556666 344433 12222233334443 3444555554444444
Q ss_pred Hhc
Q 041849 164 ILG 166 (293)
Q Consensus 164 Il~ 166 (293)
+-.
T Consensus 91 l~~ 93 (108)
T TIGR00377 91 LDI 93 (108)
T ss_pred HHH
Confidence 433
No 170
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=47.92 E-value=1.3e+02 Score=23.31 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCC--------CCCeEEEEeC-CCCCHHHHHHHHHHHHhcC-CCeEEEEccchh
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDP--------TKDIRLFVNS-PGGSLSATMAIYDVVQLVR-ADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~--------~~~I~L~INS-PGGsV~ag~aIyd~I~~~~-~pV~tvv~G~AA 158 (293)
.|+.+.|+++-..++.+.+.+..+....+ .+.++|.+.. +.=+..+...|.+..+.++ ..+..+..|...
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46678999999999999999998776553 3566666633 3334555556666666655 456666666665
Q ss_pred hHHHHHhcCC
Q 041849 159 STASLILGGG 168 (293)
Q Consensus 159 Sag~lIl~ag 168 (293)
.....+-.+|
T Consensus 91 ~v~~~l~~~~ 100 (117)
T PF01740_consen 91 DVRRILERSG 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5555544444
No 171
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=47.13 E-value=57 Score=31.34 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=46.1
Q ss_pred cEEEEccee-CHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchh
Q 041849 89 RIVFLGNNI-DDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~I-d~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AA 158 (293)
.+|-+++.- .+ -.+.+-|.++..++..+.|.+++-.-|-....+.+..+. ...++||.++..|..+
T Consensus 198 ~~VsiGnd~~~g---~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 198 TCVGIGGDPFNG---TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEeCCCCCCC---CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 445566653 11 235566777788888899999999877776666665555 3356899999988776
No 172
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=41.59 E-value=66 Score=26.92 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=34.7
Q ss_pred CcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEccc
Q 041849 88 ERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVR--ADVSTVALGM 156 (293)
Q Consensus 88 ~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~--~pV~tvv~G~ 156 (293)
..+|-++.+.|-. +.+-|.++..++..+.|.+|+.+-+- +....+++++.. +||+++-.|.
T Consensus 29 s~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 29 SYVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SEEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred eEEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3455666666443 34556677778889999999997553 677777777665 8999998886
No 173
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=38.70 E-value=60 Score=27.78 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 104 AIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 104 ~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.+++.|..+.. ..+. +.|| |||....+.+|.|+|+..+.|++=+-.
T Consensus 56 elId~i~~a~~--~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~VEVHi 101 (146)
T PRK13015 56 ELIDWIHEARG--DVAG--IVIN-PGAYTHTSVAIRDALAALELPVIEVHI 101 (146)
T ss_pred HHHHHHHHhhh--cCCE--EEEc-chHHhhhHHHHHHHHHcCCCCEEEEEc
Confidence 45555554421 2333 4455 999999999999999999998776554
No 174
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=37.61 E-value=66 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 104 AIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 104 ~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.+++.|..+.. .... +.|| |||....+.+|.|+|+..+.|++=+-.
T Consensus 56 elId~I~~a~~--~~dg--iiIN-pga~THtSiAl~DAl~~~~~P~VEVHi 101 (146)
T PRK05395 56 ELIDRIHEARD--GADG--IIIN-PGAYTHTSVALRDALAAVSIPVIEVHL 101 (146)
T ss_pred HHHHHHHhccc--CCcE--EEEC-chHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45565554432 2333 3444 999999999999999999998775554
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.48 E-value=2e+02 Score=22.52 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=48.8
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCC-CCCHHHHHHHHHHHHhcCC-CeEEEEccchhhHH--HHH
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSP-GGSLSATMAIYDVVQLVRA-DVSTVALGMSASTA--SLI 164 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSP-GGsV~ag~aIyd~I~~~~~-pV~tvv~G~AASag--~lI 164 (293)
++++++..... +.+++.+.. .++-.+.|.+- +.....+..+.+.+++... .+..++.|.+.+.. .+.
T Consensus 29 ~V~~lg~~~~~---~~l~~~~~~------~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~ 99 (119)
T cd02067 29 EVIDLGVDVPP---EEIVEAAKE------EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLK 99 (119)
T ss_pred EEEECCCCCCH---HHHHHHHHH------cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHH
Confidence 66777755443 455555542 23445556555 7788999999999999876 68889999888864 444
Q ss_pred hcCCC
Q 041849 165 LGGGT 169 (293)
Q Consensus 165 l~ag~ 169 (293)
..+++
T Consensus 100 ~~G~D 104 (119)
T cd02067 100 EIGVD 104 (119)
T ss_pred HcCCe
Confidence 44554
No 176
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=37.46 E-value=1.4e+02 Score=26.51 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=43.1
Q ss_pred chhhhhccCcEEEEcceeCHhHHHHHHHHHHHhh-hCCCCCCeEEEE---eCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 041849 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLD-AQDPTKDIRLFV---NSPGGSLSATMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 80 di~~~l~~~riifL~G~Id~~~a~~ii~qL~~l~-~~~~~~~I~L~I---NSPGGsV~ag~aIyd~I~~~~~pV~tvv~G 155 (293)
++...++.+--+-+.| +.+++.|.-.+..+. ..+....++|.+ |...|.+..-.+-...-+..+.+|+|+..|
T Consensus 75 ~~l~~~l~~~q~g~ag---~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 75 ETLKMMHAHSQFCWSG---DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred HHHHHHHHhcccCccC---ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 4555555544443343 567788888888876 444445566666 333444544432234445667888888877
Q ss_pred c
Q 041849 156 M 156 (293)
Q Consensus 156 ~ 156 (293)
-
T Consensus 152 ~ 152 (191)
T cd01455 152 S 152 (191)
T ss_pred C
Confidence 5
No 177
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=37.30 E-value=68 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 104 AIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 104 ~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.+++.|..+.. ..+. +.|| |||....+.+|.|++..+..|++=|-.
T Consensus 54 elid~I~~a~~--~~dg--iIIN-pga~THtSvAi~DAl~~~~~P~VEVHi 99 (140)
T cd00466 54 ELIDWIHEARD--GADG--IIIN-PGAYTHTSIALRDALAAVSIPVIEVHI 99 (140)
T ss_pred HHHHHHHHhhc--cCcE--EEEc-chHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45565554432 2333 3344 999999999999999999998765544
No 178
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=36.16 E-value=79 Score=28.92 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=52.5
Q ss_pred EcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEE---EE--cc---chhhHHHHH
Q 041849 93 LGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVST---VA--LG---MSASTASLI 164 (293)
Q Consensus 93 L~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~t---vv--~G---~AASag~lI 164 (293)
-++.|-.++...+..++..+. -.-..+.+|+||+.++++.++-+.|++.+..+.| ++ .| .|++++=+|
T Consensus 53 atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgkLi 128 (245)
T COG3904 53 ATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGKLI 128 (245)
T ss_pred CCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEEEEEecCCCCcHHHHHhhhhhh
Confidence 367788877788877776554 4678899999999999999999999999987776 22 12 456666555
Q ss_pred h
Q 041849 165 L 165 (293)
Q Consensus 165 l 165 (293)
=
T Consensus 129 R 129 (245)
T COG3904 129 R 129 (245)
T ss_pred h
Confidence 4
No 179
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=35.70 E-value=71 Score=27.19 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 041849 104 AIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVAL 154 (293)
Q Consensus 104 ~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~ 154 (293)
.+++.|..+.. .... +.|| |||....+.+|.|+|...+.|++=+-.
T Consensus 54 elId~i~~a~~--~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~vEVHi 99 (141)
T TIGR01088 54 QLIDKIHEAEG--QYDG--IIIN-PGALTHTSVALRDALAAVSLPVVEVHL 99 (141)
T ss_pred HHHHHHHhccc--cCCE--EEEc-ChHHhhhHHHHHHHHHcCCCCEEEEEc
Confidence 45555554432 1233 4455 999999999999999999998775544
No 180
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.93 E-value=1.4e+02 Score=29.14 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=46.1
Q ss_pred EEEcceeCHhHHHHHHHHHHHhh---hCCCCCCeEEEEeCCCCCHHHHHH---HHHHHHhcCCCeEEEEccchhhH
Q 041849 91 VFLGNNIDDFVADAIISQLLLLD---AQDPTKDIRLFVNSPGGSLSATMA---IYDVVQLVRADVSTVALGMSAST 160 (293)
Q Consensus 91 ifL~G~Id~~~a~~ii~qL~~l~---~~~~~~~I~L~INSPGGsV~ag~a---Iyd~I~~~~~pV~tvv~G~AASa 160 (293)
+.++.+.|...++.+...|.... -++..++=.+.|||.+-...+... +.+.++.....+.+++.|--++.
T Consensus 2 ~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred EeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 46788888888899988887532 112234567889999888776444 44444544445677777755443
No 181
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.11 E-value=2.3e+02 Score=21.90 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=47.8
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEccchhhHHHHHh
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNS-PGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLIL 165 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INS-PGGsV~ag~aIyd~I~~~~~pV~tvv~G~AASag~lIl 165 (293)
.+.+++..+.. +.+.+.+... ++=.+-|++ .+........+.+.++.....+.++++|..++...-.+
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~------~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~ 98 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAE------RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEI 98 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHT------TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcC------CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHH
Confidence 55566555544 5555555432 222366676 88899999999999999988899999999887765543
No 182
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=32.48 E-value=2.5e+02 Score=22.09 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=43.8
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHH---HHHHHHHhcCC-CeEEEEccchhhHHHHHh
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM---AIYDVVQLVRA-DVSTVALGMSASTASLIL 165 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~---aIyd~I~~~~~-pV~tvv~G~AASag~lIl 165 (293)
++.+.|+||...+..+.+.+...-.+.+.+. +.||.-|=...++. .+.+..+.++. .+..+..|+--+.+-.+-
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~ 93 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLE 93 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 5679999999999999998885444333333 66666664333332 22333333332 245555566555554444
Q ss_pred cCC
Q 041849 166 GGG 168 (293)
Q Consensus 166 ~ag 168 (293)
..|
T Consensus 94 ~~g 96 (117)
T COG1366 94 LTG 96 (117)
T ss_pred HhC
Confidence 443
No 183
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=31.81 E-value=94 Score=29.05 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=42.9
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv 153 (293)
||+|++..+...--+.+.+.|..+.++.+..-++.--....|...-...+++.|..++.++.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 68888777766545566666777776554443333343443333456899999999999998875
No 184
>PRK06091 membrane protein FdrA; Validated
Probab=31.31 E-value=1.1e+02 Score=31.66 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=42.0
Q ss_pred HHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccchh
Q 041849 105 IISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSA 158 (293)
Q Consensus 105 ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~AA 158 (293)
+.+.|.++..++..+.|.+|+-=|+-.+.. .+.++++.+++||+++..|.-.
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 456677778888888999998777777775 8888888889999999988644
No 185
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.51 E-value=47 Score=29.12 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=21.1
Q ss_pred CC-CCHHHHH------HHHHHHHhcCCCeEEEEccc
Q 041849 128 PG-GSLSATM------AIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 128 PG-GsV~ag~------aIyd~I~~~~~pV~tvv~G~ 156 (293)
|| |...+++ .+.+.++..+.||..+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 7766664 35677787788988888764
No 186
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=29.51 E-value=2.5e+02 Score=23.05 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=35.0
Q ss_pred CcEEEEcceeCHh---HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhc
Q 041849 88 ERIVFLGNNIDDF---VADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLV 145 (293)
Q Consensus 88 ~riifL~G~Id~~---~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~ 145 (293)
.+|..++|.=+.. ..++|.+.+..+.. ..+.+.+..+= ||++......++.++.-
T Consensus 28 ~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~--~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~ 85 (125)
T TIGR02364 28 VTIISAGGTDDGRLGTSPDKIIEAIEKADN--EADGVLIFYDL-GSAVMNAEMAVELLEDE 85 (125)
T ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhcC--CCCCEEEEEcC-CCcHhHHHHHHHHhccc
Confidence 4666666554433 34556556654432 25689999999 99998776666666643
No 187
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=29.47 E-value=1.2e+02 Score=28.49 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=45.1
Q ss_pred cCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH--HHHHHHH
Q 041849 87 KERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA--TMAIYDV 141 (293)
Q Consensus 87 ~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a--g~aIyd~ 141 (293)
..+|.=+.+.++...-..+.++|..++++...+-.+|.|.|-||.-.+ +..+++.
T Consensus 33 ~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 33 SQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred cceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 457777888999998999999999999998888999999999988544 4445554
No 188
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=27.93 E-value=39 Score=22.60 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.5
Q ss_pred cCCcccCHHHHHHcCCcee
Q 041849 231 DRDRYMSPIEAVEYGIIDG 249 (293)
Q Consensus 231 ~~~~~lsa~EAle~GLID~ 249 (293)
..+..|+-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3567889999999999995
No 189
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=27.87 E-value=1.6e+02 Score=24.67 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=30.4
Q ss_pred CcEEEEcceeCH------hHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCC--HHHHHHHHHHHH
Q 041849 88 ERIVFLGNNIDD------FVADAIISQLLLLDAQDPTKDIRLFVNSPGGS--LSATMAIYDVVQ 143 (293)
Q Consensus 88 ~riifL~G~Id~------~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGs--V~ag~aIyd~I~ 143 (293)
.++-|..=+|.+ +..+.|++.+..+ .+.--|.+||-.|. .+.+|.||+.|+
T Consensus 91 ~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp TT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555444444 3445555555543 24678888888876 788999999885
No 190
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=26.91 E-value=1e+02 Score=28.75 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=30.8
Q ss_pred eEEEEeCCC-CCHHHHHHHHHHHHhcCCCeEEEEccc
Q 041849 121 IRLFVNSPG-GSLSATMAIYDVVQLVRADVSTVALGM 156 (293)
Q Consensus 121 I~L~INSPG-GsV~ag~aIyd~I~~~~~pV~tvv~G~ 156 (293)
|.+.+...| |.+.-+++|.+.++. +..|..++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 788899999 999999999999998 87887776655
No 191
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=26.75 E-value=2.4e+02 Score=29.21 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=30.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 041849 121 IRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 121 I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G 155 (293)
-++.+--||..=.+|+.+...+...+.+|.++..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~ 171 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPK 171 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcC
Confidence 47788999999999999999999888888887744
No 192
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.59 E-value=1.7e+02 Score=22.30 Aligned_cols=66 Identities=9% Similarity=0.180 Sum_probs=39.8
Q ss_pred hccCcEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccch
Q 041849 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 85 l~~~riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G~A 157 (293)
++.+++|+++|+-+......+.+.+. ......=+-.|+. ||. ........+...+.|+.+++.+=.
T Consensus 1 fFa~~vIlVEG~tE~~~l~~~~~~~~----~~~~~~~i~ii~~-gG~--~~~~~~~ll~~~~i~~~vi~D~D~ 66 (97)
T cd01026 1 FFADKVILVEGDSEEILLPALAKKLG----LDLDEAGISIIPV-GGK--NFKPFIKLLNALGIPVAVLTDLDA 66 (97)
T ss_pred CCCCeEEEEecHHHHHHHHHHHHHhC----CCHHHCCEEEEEe-CCc--chHHHHHHHHHcCCCEEEEEeCCC
Confidence 35678999998877766666655541 1111112233454 555 344456778888889888886433
No 193
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=26.55 E-value=1.2e+02 Score=25.93 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCeEEEEeCCCCC----------------HHHHHHHHHHHHhcCCCeEEEEccchhhHHHHH
Q 041849 101 VADAIISQLLLLDAQDPTKDIRLFVNSPGGS----------------LSATMAIYDVVQLVRADVSTVALGMSASTASLI 164 (293)
Q Consensus 101 ~a~~ii~qL~~l~~~~~~~~I~L~INSPGGs----------------V~ag~aIyd~I~~~~~pV~tvv~G~AASag~lI 164 (293)
+.+.+.+.+..+..+.+.+.|.++-|.-|-- -..=+.|++....++.|...+.. |.+||.+|
T Consensus 73 t~e~~~~~~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~D--C~~AG~il 150 (154)
T PF14538_consen 73 TVEDLKRLCQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFD--CSNAGSIL 150 (154)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEE--CCcHHHHH
Confidence 4566666666677666678888888887733 12336899999999999888887 66777665
No 194
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=25.49 E-value=2.1e+02 Score=24.50 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEEeCC-CCCHHHHHHHHHHHHhcC-----CCeEEEEccchhh
Q 041849 103 DAIISQLLLLDAQDPTKDIRLFVNSP-GGSLSATMAIYDVVQLVR-----ADVSTVALGMSAS 159 (293)
Q Consensus 103 ~~ii~qL~~l~~~~~~~~I~L~INSP-GGsV~ag~aIyd~I~~~~-----~pV~tvv~G~AAS 159 (293)
+.+.+.|..+.+++.++.|.|.+=-- |..-+.+..+.++++..+ .||++++.|..+-
T Consensus 59 ~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 59 STRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 34556666666666565555544333 445677889999998764 6899988887765
No 195
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=24.31 E-value=3.2e+02 Score=20.65 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=25.7
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEE
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~I 125 (293)
.++.+.|+++-.+++.+.+++..+..+...+.|+|.+
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3567899999999999999886544333345555543
No 196
>smart00250 PLEC Plectin repeat.
Probab=24.31 E-value=50 Score=21.16 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCcccCHHHHHHcCCceee
Q 041849 232 RDRYMSPIEAVEYGIIDGV 250 (293)
Q Consensus 232 ~~~~lsa~EAle~GLID~I 250 (293)
.+.-||-.||++.|+||..
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4567899999999999964
No 197
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=23.55 E-value=3.6e+02 Score=21.03 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.2
Q ss_pred EEEEcceeCHhHHHHHHHHHHHhh---hCCCCCCeEEEEeCCCCCHHHHHHHHHHHHhcC
Q 041849 90 IVFLGNNIDDFVADAIISQLLLLD---AQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVR 146 (293)
Q Consensus 90 iifL~G~Id~~~a~~ii~qL~~l~---~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~~~ 146 (293)
+..++-+.|...++.+.+.|...- .++..++=.+.|||.+=.-.+-..+++.|+.+.
T Consensus 4 i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~ 63 (98)
T PF00919_consen 4 IETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLK 63 (98)
T ss_pred EEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 556788999999999999888641 223356667889999988888888888887664
No 198
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.44 E-value=1.6e+02 Score=27.23 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=43.0
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEE-E-eCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLF-V-NSPGGSLSATMAIYDVVQLVRADVSTVA 153 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~-I-NSPGGsV~ag~aIyd~I~~~~~pV~tvv 153 (293)
||+|++..+...-...+...|..+.++.+.. +++. - |.-||. .-...+++.|+.++.++.|.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D-~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlG 65 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKID-FVIANGENAAGGK-GITPKIAKELLSAGVDVITMG 65 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCC-EEEECCccccCCC-CCCHHHHHHHHhcCCCEEEec
Confidence 6889888888777778888888877654332 2221 2 445552 123688999999999988875
No 199
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.25 E-value=5e+02 Score=25.56 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHH-----HHHHHHHHHhcCCCeEEEEccchhhHHHHHhcCCCCCcEE
Q 041849 100 FVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSA-----TMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRF 174 (293)
Q Consensus 100 ~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~a-----g~aIyd~I~~~~~pV~tvv~G~AASag~lIl~ag~kg~R~ 174 (293)
+.+..|+++|..++... -++ |.|-=-||++.+ -..+.++|-.++.||++-++--.-. ++.=..++. |.
T Consensus 176 ~A~~~i~~al~~~~~~~--~Dv-iii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~--tl~D~vAd~--ra 248 (438)
T PRK00286 176 GAAASIVAAIERANARG--EDV-LIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDF--TIADFVADL--RA 248 (438)
T ss_pred cHHHHHHHHHHHhcCCC--CCE-EEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCc--cHHHHhhhc--cC
Confidence 45688999998877532 233 444556778654 4688899999999998866543221 223345564 88
Q ss_pred Eecceeeee
Q 041849 175 AMPNTRVMI 183 (293)
Q Consensus 175 a~P~S~imi 183 (293)
..|++..-+
T Consensus 249 ~TPtaaae~ 257 (438)
T PRK00286 249 PTPTAAAEL 257 (438)
T ss_pred CChHHHHHH
Confidence 888765433
No 200
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.53 E-value=3.7e+02 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCeEEEEeCCCCCHHH-HHHHHHHHHhcCCCeEEEEccch
Q 041849 118 TKDIRLFVNSPGGSLSA-TMAIYDVVQLVRADVSTVALGMS 157 (293)
Q Consensus 118 ~~~I~L~INSPGGsV~a-g~aIyd~I~~~~~pV~tvv~G~A 157 (293)
.+.|++++.|||-.=.. ...+...+++.+..|.++..|-.
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 35899999999876332 22555666666677878777754
No 201
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.95 E-value=4.1e+02 Score=20.67 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 041849 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALG 155 (293)
Q Consensus 118 ~~~I~L~INSPGGsV~ag~aIyd~I~~~~~pV~tvv~G 155 (293)
.+++.|.| |-.|.-.+........+..+.+|.++...
T Consensus 47 ~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 47 PGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45677777 55556666667777778888888877753
No 202
>PLN02522 ATP citrate (pro-S)-lyase
Probab=20.57 E-value=2.6e+02 Score=29.43 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=43.6
Q ss_pred cEEEEcceeCHhHHHHHHHHHHHhhhCCCCCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCeEEEEccchh
Q 041849 89 RIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL--VRADVSTVALGMSA 158 (293)
Q Consensus 89 riifL~G~Id~~~a~~ii~qL~~l~~~~~~~~I~L~INSPGGsV~ag~aIyd~I~~--~~~pV~tvv~G~AA 158 (293)
.+|-++|..+.+ -.+.+-|.++.+++..+.|.+++-=-|.+ +....+++++ .++||++++.|.++
T Consensus 196 ~~VsiGnd~~~g--~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~---e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 196 EGIAIGGDVFPG--STLSDHVLRFNNIPQIKMIVVLGELGGRD---EYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEeCCCCCCC--CCHHHHHHHHhcCCCCCEEEEEEecCchh---HHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 455677765432 23456677788888888888888743333 3444455554 46899999999877
Done!