BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041851
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 18 WSLHA-IGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS 57
W L+A + I E SS F L+ +DL F RSRG +SL+
Sbjct: 22 WGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALSLA 62
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 18 WSLHA-IGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS 57
W L+A + I E SS F L+ +DL F RSRG +SL+
Sbjct: 22 WGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALSLA 62
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
L LPD L +L +R +P+S LN + LS + ++ L T +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 64 L---DGLHTLTYLNLTDCGITRLPENIGXXXXXXXXXXXXNNFERIPESITQRSKLGRLS 120
GL L L L GI LP +I + + +I KL L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
Query: 121 LRYCERLQS 129
LR C L++
Sbjct: 236 LRGCTALRN 244
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 41 DLLSFQRSRGHKQMSL-SLPITLSLDGLHTLTYLN---LTDCGITRLPENIGXXXXXXXX 96
DLL G + L S+P+ D L++L + G+ LP+
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETL 132
Query: 97 XXXXNNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDA 142
N +P SI ++L LS+R C L++LP L DA
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACP---ELTELPEPLASTDA 175
>pdb|1WMM|A Chain A, Crystal Structure Of Ph1033 From Pyrococcus Horikoshii Ot3
pdb|2HD9|A Chain A, Crystal Structure Of Ph1033 From Pyrococcus Horikoshii Ot3
pdb|2ZBN|A Chain A, Crystal Structure Of Ph1033 From Pyrococcus Horikoshii Ot3
Length = 145
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 18 WSLHAIGTAIREVPSSFFRL 37
WS+H G A+RE+P ++L
Sbjct: 120 WSMHFFGKAMRELPEEDYKL 139
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 REVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL---SLDGLHTLTYLNLTDCGITRLP 84
R P SF+ L+N+ LS +R+ + +SL+ + S L L YLN+ D I
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 85 EN 86
N
Sbjct: 346 SN 347
>pdb|2P5D|A Chain A, Crystal Structure Of Mjecl36 From Methanocaldococcus
Jannaschii Dsm 2661
Length = 147
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 18 WSLHAIGTAIREVPSSFFRL 37
WS H +G A+RE+P ++L
Sbjct: 124 WSGHLMGKAMREIPEEDYKL 143
>pdb|2H7T|A Chain A, Solution Structure Of The C-Terminal Domain Of
Insulin-Like Growth Factor Binding Protein 2 (Igfbp-2)
Length = 107
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 6 RLPDELGNLEALWSLH 21
RLPDE G LE L+SLH
Sbjct: 24 RLPDERGPLEHLYSLH 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,809,501
Number of Sequences: 62578
Number of extensions: 113631
Number of successful extensions: 147
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 11
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)