Query 041851
Match_columns 151
No_of_seqs 116 out of 1288
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.7 3E-18 6.4E-23 109.3 -2.5 135 3-145 44-183 (264)
2 PLN00113 leucine-rich repeat r 99.6 5.1E-15 1.1E-19 118.4 8.4 134 6-145 155-294 (968)
3 KOG0617 Ras suppressor protein 99.6 5.1E-17 1.1E-21 103.7 -4.5 135 2-145 66-200 (264)
4 PLN00113 leucine-rich repeat r 99.5 2.1E-14 4.5E-19 115.0 8.6 120 6-131 179-301 (968)
5 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-13 2.6E-18 89.7 2.2 129 4-143 9-148 (175)
6 KOG0444 Cytoskeletal regulator 99.3 1E-13 2.2E-18 103.9 -0.9 137 3-145 43-183 (1255)
7 KOG4194 Membrane glycoprotein 99.3 9.2E-13 2E-17 97.8 2.1 122 3-131 208-333 (873)
8 KOG0444 Cytoskeletal regulator 99.3 2.4E-13 5.1E-18 102.0 -1.7 140 2-149 232-376 (1255)
9 KOG0472 Leucine-rich repeat pr 99.3 1.3E-13 2.8E-18 98.3 -3.4 123 3-133 148-293 (565)
10 KOG0472 Leucine-rich repeat pr 99.3 1.1E-12 2.4E-17 93.5 0.5 117 3-126 423-540 (565)
11 PLN03210 Resistant to P. syrin 99.2 1.7E-10 3.6E-15 94.2 10.6 127 14-150 777-908 (1153)
12 PLN03210 Resistant to P. syrin 99.2 1.7E-10 3.7E-15 94.2 10.3 124 14-145 610-735 (1153)
13 KOG4194 Membrane glycoprotein 99.2 1.5E-11 3.3E-16 91.5 3.1 129 11-145 193-327 (873)
14 PLN03150 hypothetical protein; 99.1 2.4E-10 5.3E-15 87.9 8.0 110 16-131 419-532 (623)
15 KOG0618 Serine/threonine phosp 99.1 6.8E-12 1.5E-16 97.0 -0.5 138 3-148 346-489 (1081)
16 PF14580 LRR_9: Leucine-rich r 99.1 6.9E-11 1.5E-15 76.8 2.4 106 10-123 36-149 (175)
17 KOG0618 Serine/threonine phosp 99.0 1.1E-11 2.5E-16 95.8 -2.2 136 3-145 298-462 (1081)
18 PRK15370 E3 ubiquitin-protein 99.0 1.4E-09 3.1E-14 84.9 6.7 37 69-107 263-299 (754)
19 PLN03150 hypothetical protein; 99.0 1.7E-09 3.7E-14 83.3 6.7 101 40-146 420-526 (623)
20 cd00116 LRR_RI Leucine-rich re 99.0 1E-10 2.2E-15 82.9 -0.0 41 9-49 75-119 (319)
21 PRK15370 E3 ubiquitin-protein 99.0 1.5E-09 3.2E-14 84.8 6.0 127 3-145 231-377 (754)
22 PRK15387 E3 ubiquitin-protein 98.9 4.8E-09 1E-13 82.0 7.4 128 3-143 212-370 (788)
23 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.7E-15 86.3 -1.4 113 3-124 109-221 (722)
24 PRK15387 E3 ubiquitin-protein 98.9 7.2E-09 1.6E-13 81.0 8.0 76 16-106 202-277 (788)
25 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.4E-15 86.6 -2.5 135 2-145 85-221 (722)
26 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 56.4 3.2 40 63-102 20-60 (61)
27 cd00116 LRR_RI Leucine-rich re 98.8 1.9E-09 4.1E-14 76.5 1.6 106 17-124 110-231 (319)
28 COG4886 Leucine-rich repeat (L 98.8 5.5E-09 1.2E-13 76.4 3.3 47 3-49 127-174 (394)
29 PF13855 LRR_8: Leucine rich r 98.8 1.4E-08 3E-13 54.8 4.0 58 68-125 1-60 (61)
30 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.7E-13 74.5 3.6 135 3-145 151-287 (394)
31 KOG1259 Nischarin, modulator o 98.7 3E-09 6.5E-14 74.0 -0.1 105 12-125 281-385 (490)
32 KOG4237 Extracellular matrix p 98.6 1.9E-09 4.1E-14 77.1 -3.3 119 4-131 58-180 (498)
33 KOG1259 Nischarin, modulator o 98.6 4.6E-09 9.9E-14 73.1 -1.4 114 3-125 295-410 (490)
34 KOG4237 Extracellular matrix p 98.5 1.7E-09 3.6E-14 77.4 -4.5 118 2-125 77-199 (498)
35 PF12799 LRR_4: Leucine Rich r 98.5 1.6E-07 3.5E-12 47.1 3.3 38 69-106 2-39 (44)
36 KOG3207 Beta-tubulin folding c 98.4 5.9E-08 1.3E-12 70.3 -0.0 111 10-125 141-257 (505)
37 KOG1859 Leucine-rich repeat pr 98.4 6.7E-09 1.4E-13 79.5 -5.2 116 1-125 173-290 (1096)
38 KOG3665 ZYG-1-like serine/thre 98.3 3.7E-07 8E-12 71.1 3.3 124 15-144 122-259 (699)
39 PF12799 LRR_4: Leucine Rich r 98.3 7E-07 1.5E-11 44.8 2.9 41 91-132 1-41 (44)
40 KOG4658 Apoptotic ATPase [Sign 98.3 4.2E-07 9E-12 72.5 2.5 126 13-143 521-650 (889)
41 KOG4579 Leucine-rich repeat (L 98.3 5.4E-08 1.2E-12 60.4 -2.0 109 15-131 27-139 (177)
42 KOG3207 Beta-tubulin folding c 98.3 7.4E-08 1.6E-12 69.8 -1.7 132 12-147 118-258 (505)
43 KOG4658 Apoptotic ATPase [Sign 98.2 9.9E-07 2.1E-11 70.4 2.7 115 3-124 534-652 (889)
44 KOG1644 U2-associated snRNP A' 98.1 2.8E-06 6.1E-11 56.1 3.8 64 62-125 58-124 (233)
45 PRK15386 type III secretion pr 98.1 1.1E-05 2.3E-10 59.1 6.8 116 11-144 48-186 (426)
46 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.2E-12 72.5 -3.3 123 14-145 163-289 (1096)
47 KOG1644 U2-associated snRNP A' 98.1 1E-05 2.2E-10 53.5 5.5 101 16-123 43-149 (233)
48 KOG0531 Protein phosphatase 1, 98.1 9.3E-07 2E-11 65.3 0.8 107 10-125 90-197 (414)
49 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.5E-12 66.1 -4.9 34 16-49 186-221 (419)
50 KOG1909 Ran GTPase-activating 98.0 6.6E-07 1.4E-11 63.3 -1.3 37 12-48 89-130 (382)
51 KOG0531 Protein phosphatase 1, 97.9 2.8E-06 6E-11 62.8 0.1 103 13-125 70-173 (414)
52 KOG1909 Ran GTPase-activating 97.8 5E-06 1.1E-10 58.9 0.0 136 9-146 114-281 (382)
53 KOG4579 Leucine-rich repeat (L 97.6 1.8E-06 3.9E-11 53.8 -3.5 93 11-110 49-142 (177)
54 KOG2739 Leucine-rich acidic nu 97.6 6.5E-05 1.4E-09 51.4 3.0 59 66-124 63-126 (260)
55 PRK15386 type III secretion pr 97.6 0.00053 1.2E-08 50.5 7.6 54 91-147 156-212 (426)
56 KOG2120 SCF ubiquitin ligase, 97.5 3.2E-06 6.9E-11 59.1 -4.4 67 11-81 206-273 (419)
57 KOG3665 ZYG-1-like serine/thre 97.5 2.6E-05 5.7E-10 61.0 0.1 104 37-146 121-231 (699)
58 KOG2982 Uncharacterized conser 97.4 5.6E-05 1.2E-09 53.1 0.7 85 13-104 69-159 (418)
59 KOG2739 Leucine-rich acidic nu 97.0 0.0005 1.1E-08 47.2 2.6 107 12-123 40-152 (260)
60 KOG2123 Uncharacterized conser 96.9 2.1E-05 4.7E-10 54.6 -4.7 61 66-127 39-101 (388)
61 PF13306 LRR_5: Leucine rich r 96.8 0.0092 2E-07 36.5 6.7 103 10-123 7-112 (129)
62 KOG2982 Uncharacterized conser 96.5 0.00092 2E-08 47.2 0.9 104 17-124 47-156 (418)
63 PF00560 LRR_1: Leucine Rich R 96.5 0.00065 1.4E-08 28.5 0.1 20 16-35 1-20 (22)
64 KOG2123 Uncharacterized conser 96.5 0.00013 2.9E-09 50.8 -3.4 98 14-120 18-123 (388)
65 PF13504 LRR_7: Leucine rich r 96.1 0.0038 8.3E-08 24.4 1.1 11 93-103 3-13 (17)
66 COG5238 RNA1 Ran GTPase-activa 95.8 0.01 2.3E-07 41.6 3.1 137 9-146 86-253 (388)
67 KOG1947 Leucine rich repeat pr 95.3 0.0032 7E-08 47.1 -0.9 113 13-127 186-308 (482)
68 smart00369 LRR_TYP Leucine-ric 94.5 0.046 9.9E-07 23.6 2.1 18 91-108 2-19 (26)
69 smart00370 LRR Leucine-rich re 94.5 0.046 9.9E-07 23.6 2.1 18 91-108 2-19 (26)
70 COG5238 RNA1 Ran GTPase-activa 94.4 0.0064 1.4E-07 42.6 -1.1 115 9-125 114-253 (388)
71 KOG0473 Leucine-rich repeat pr 93.8 0.00085 1.8E-08 45.8 -6.1 89 9-104 36-124 (326)
72 PF13306 LRR_5: Leucine rich r 93.8 0.21 4.5E-06 30.4 4.9 96 10-116 30-128 (129)
73 KOG3864 Uncharacterized conser 92.6 0.015 3.2E-07 38.8 -1.7 62 62-123 119-185 (221)
74 KOG1947 Leucine rich repeat pr 91.8 0.025 5.4E-07 42.3 -1.5 111 9-123 208-330 (482)
75 KOG3864 Uncharacterized conser 90.0 0.11 2.4E-06 34.8 0.4 78 69-148 102-189 (221)
76 smart00367 LRR_CC Leucine-rich 89.9 0.29 6.2E-06 21.1 1.6 15 135-149 2-16 (26)
77 smart00364 LRR_BAC Leucine-ric 89.4 0.3 6.5E-06 21.3 1.4 18 91-108 2-19 (26)
78 KOG0473 Leucine-rich repeat pr 88.7 0.0045 9.7E-08 42.4 -6.9 90 33-129 37-126 (326)
79 KOG4341 F-box protein containi 88.5 0.19 4.2E-06 37.4 0.8 82 67-148 345-439 (483)
80 KOG4341 F-box protein containi 87.8 0.13 2.8E-06 38.2 -0.5 109 37-149 293-415 (483)
81 smart00365 LRR_SD22 Leucine-ri 86.5 0.74 1.6E-05 20.0 1.8 15 91-105 2-16 (26)
82 PF13516 LRR_6: Leucine Rich r 85.8 0.26 5.6E-06 20.7 0.1 14 15-28 2-15 (24)
83 KOG3763 mRNA export factor TAP 82.3 0.73 1.6E-05 35.5 1.3 64 66-130 216-286 (585)
84 smart00368 LRR_RI Leucine rich 79.7 2 4.4E-05 18.8 1.8 14 91-104 2-15 (28)
85 KOG4308 LRR-containing protein 42.1 1.1 2.5E-05 34.2 -4.6 56 70-125 235-301 (478)
86 TIGR00864 PCC polycystin catio 37.4 27 0.00058 33.0 2.2 31 74-104 1-32 (2740)
87 TIGR00864 PCC polycystin catio 28.6 42 0.0009 31.8 2.0 20 62-81 13-32 (2740)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=3e-18 Score=109.29 Aligned_cols=135 Identities=30% Similarity=0.410 Sum_probs=104.4
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++.-+|..+..+++|+.|++.+|.++++|.+++.+++|+++++..|+. ...| ..|+.++.|+.+++++|++.+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-----~~lp--rgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-----NILP--RGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-----hcCc--cccCCCchhhhhhcccccccc
Confidence 456678888888888888888888888888888888888888887762 2345 678888889999999988886
Q ss_pred --cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851 83 --LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 83 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~ 145 (151)
+|..+..|+.|+.|+++.|.+..+|..++.+++|+.|.+..|. +-.+|+- ...|+.|.++++
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence 7778888888888888888888888888888888888888874 4445542 244555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=5.1e-15 Score=118.41 Aligned_cols=134 Identities=25% Similarity=0.415 Sum_probs=73.4
Q ss_pred CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851 6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L 83 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~ 83 (151)
.+|..++.+++|++|++++|.+. .+|..+..+++|++|++.+|. +.+..| ..++.+++|+.+++++|.+.+ +
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ----LVGQIP--RELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC----CcCcCC--hHHcCcCCccEEECcCCccCCcC
Confidence 35556666666667777666655 556666666666666666554 333344 445555555666665555554 5
Q ss_pred CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851 84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~ 145 (151)
|..++.+++|++|++++|.++ .+|..++.+++|+.|++++|.....+|.. +.+|++|++++|
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 555555555555555555554 44555555555555555555433333321 234444444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=5.1e-17 Score=103.69 Aligned_cols=135 Identities=25% Similarity=0.374 Sum_probs=116.0
Q ss_pred ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
.+|+++|..++++++|+.|++..|++...|..|+.++.|+.+++++|... ....| ..|..|..|+.+.+++|...
T Consensus 66 nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~---e~~lp--gnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 66 NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN---ENSLP--GNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc---cccCC--cchhHHHHHHHHHhcCCCcc
Confidence 47899999999999999999999999999999999999999999988632 23566 78888999999999999999
Q ss_pred ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851 82 RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145 (151)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~ 145 (151)
-+|+.++.+++|+.|.+..|.+-++|..++.++.|+.|.+++| .+.-+|+ .+..+++.+.
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlpp---el~~l~l~~~ 200 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP---ELANLDLVGN 200 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecCh---hhhhhhhhhh
Confidence 8999999999999999999999999999999999999999998 4555554 3444444433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=2.1e-14 Score=114.98 Aligned_cols=120 Identities=25% Similarity=0.395 Sum_probs=67.8
Q ss_pred CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851 6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L 83 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~ 83 (151)
.+|..+..+++|++|++++|.+. .+|..+..+.+|+.+++..|. +.+..| ..++.+++|+.|++++|.+.+ +
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN----LSGEIP--YEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc----cCCcCC--hhHhcCCCCCEEECcCceecccc
Confidence 45666666777777777776665 456666666667776666554 333444 445555555555555555554 4
Q ss_pred CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCC
Q 041851 84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.....+|
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 555555555555555555554 444445555555555555554333333
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=1.2e-13 Score=89.68 Aligned_cols=129 Identities=25% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCCCChhccCcccccccccccccceecChhhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
|+.+|.. .+..+++.|++++|.|+.+.. +. .+.+|+.++++.|.... + +.+..++.|+.|++++|.+++
T Consensus 9 i~~~~~~-~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-----l---~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 9 IEQIAQY-NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-----L---EGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ----------------------------S---TT-TT--EEE-TTS--S----------TT----TT--EEE--SS---S
T ss_pred ccccccc-ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-----c---cCccChhhhhhcccCCCCCCc
Confidence 3445533 455678999999999987643 44 57899999999887322 1 456778999999999999998
Q ss_pred cCccc-CCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-------CCCCcceEccc
Q 041851 83 LPENI-GQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-------LPCKLHELDAH 143 (151)
Q Consensus 83 ~~~~~-~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-------~~~~l~~l~l~ 143 (151)
+...+ ..+++|+.|++++|.+..+.. .+..+++|+.|++.+|+.... +. .+++|+.||-.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 76555 368999999999999985433 567889999999999986543 32 13777777654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=1e-13 Score=103.89 Aligned_cols=137 Identities=24% Similarity=0.308 Sum_probs=85.8
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|+.++.+.+|++|.+++|.+..+-..+..++.|+.+.+..|..-. ..+| ..+..+..|+.++++.|.+++
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP--~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIP--TDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCC--chhcccccceeeecchhhhhh
Confidence 45556666666666666666666665554455556666666655554111 1233 445566777777777777777
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCCCC---CCcceEcccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHHC 145 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~~ 145 (151)
+|..+...+++..|++++|.+..+|.. +.+++.|-.|+++.| .+..+|+.. ..|++|+++++
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC
Confidence 777777777777777777777777764 346667777777776 466666543 44566666654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=9.2e-13 Score=97.82 Aligned_cols=122 Identities=29% Similarity=0.305 Sum_probs=73.5
Q ss_pred cCCCCC-hhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLP-DELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+| +.|.++++|+.|++..|+|..+ .-.|.++++++.+.+.+|. +..-.. ..|..+.+++.+++..|++
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~----I~kL~D--G~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND----ISKLDD--GAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC----cccccC--cceeeecccceeecccchh
Confidence 444555 3333355566666655555533 2345555555555555553 211111 4566777788888888887
Q ss_pred CccC-cccCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCCcccccCC
Q 041851 81 TRLP-ENIGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 81 ~~~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
+.+. .++..++.|++|++++|.+.. -+..+...++|++|+++.|. +..++
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~ 333 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLD 333 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCC
Confidence 7743 356677888888888887773 34456666778888887763 55555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=2.4e-13 Score=102.01 Aligned_cols=140 Identities=29% Similarity=0.362 Sum_probs=82.7
Q ss_pred ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+++..+|+.+..+++|+.|++++|.++++.-....+.++++|++++|+ ....| +.+..++.|+.|.+.+|.+.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-----Lt~LP--~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-----LTVLP--DAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-----hccch--HHHhhhHHHHHHHhccCccc
Confidence 344444444444445555555554444433333344444444444443 12345 56666677777777777665
Q ss_pred --ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC---CCCCcceEcccCCcccc
Q 041851 82 --RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK---LPCKLHELDAHHCTALE 149 (151)
Q Consensus 82 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~l~l~~~~~l~ 149 (151)
++|..++.+.+|+.+...+|.+.-.|..++++..|+.|.++.|. +--+|. ..+.+..|++..++.|.
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence 37777777777777777777777777777777777777777663 444453 34667777777666553
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.27 E-value=1.3e-13 Score=98.26 Aligned_cols=123 Identities=28% Similarity=0.437 Sum_probs=69.5
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..++.+.++..+++.+|.++..|+....|+.|++++...|- .+..| +.++.+.+|+.+++..|.+..
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-----L~tlP--~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-----LETLP--PELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-----hhcCC--hhhcchhhhHHHHhhhccccc
Confidence 44556666666666666666666666665544446666666665542 23344 455555555555555555554
Q ss_pred cC----------------------cccC-CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC
Q 041851 83 LP----------------------ENIG-QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL 133 (151)
Q Consensus 83 ~~----------------------~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 133 (151)
+| .+.. ++.++..||+..|.+++.|..+.-+++|..+|+++| .+..+|..
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s 293 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS 293 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence 44 3222 555666666666666666666666666666666655 34555543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.25 E-value=1.1e-12 Score=93.52 Aligned_cols=117 Identities=25% Similarity=0.324 Sum_probs=86.9
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
.+..+|-.+.++++|+.|++++|.+.++|..+..+..|+.++++.|++. .+| ........++.+-.++|.++.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-----~lP--~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-----MLP--ECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-----cch--HHHhhHHHHHHHHhccccccc
Confidence 4556677777788888888888877788777777777888888877521 233 333334456666666677777
Q ss_pred cCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851 83 LPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 83 ~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~ 126 (151)
++. .+..|.+|..|++.+|.+..+|+.+++++++++|.+++|++
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 554 58888899999999999989999999999999999999874
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.20 E-value=1.7e-10 Score=94.20 Aligned_cols=127 Identities=26% Similarity=0.403 Sum_probs=98.0
Q ss_pred cccccccccccccc-eecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCC
Q 041851 14 LEALWSLHAIGTAI-REVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLS 91 (151)
Q Consensus 14 l~~L~~L~l~~~~i-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~ 91 (151)
+++|+.|++++|.. ..+|.++..+++|+.|++.+|. .....| ..+ .+++|+.+++++|. +..+|.. .+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~----~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI----NLETLP--TGI-NLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCC----CcCeeC--CCC-CccccCEEECCCCCcccccccc---cc
Confidence 35677888888764 4788888899999999998654 222445 433 67889999999875 3335532 46
Q ss_pred CCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCccccc
Q 041851 92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTALES 150 (151)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~l~~ 150 (151)
+++.|++++|.++.+|..+..+++|+.|++++|..+..+|.. +++|+.+++++|..|+.
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 889999999999999999999999999999999888888753 36788889999988864
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=1.7e-10 Score=94.15 Aligned_cols=124 Identities=28% Similarity=0.472 Sum_probs=62.9
Q ss_pred cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCCC
Q 041851 14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLSS 92 (151)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~~ 92 (151)
+.+|..|++.++.+..++..+..+++|+.++++.+.. ....| .+..+++|+.|++.+|. +..+|..++.+++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~----l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN----LKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCC----cCcCC---ccccCCcccEEEecCCCCccccchhhhccCC
Confidence 3455555555555555554445555555555553321 11222 23445556666665554 3335555555666
Q ss_pred CCEEeCCCC-CCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851 93 LEELDLQEN-NFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145 (151)
Q Consensus 93 L~~L~l~~n-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~ 145 (151)
|+.|++++| .++.+|..+ .+++|+.|++++|..+..+|....+++.|++.++
T Consensus 683 L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 666666554 233455433 4555666666655555555554455555555433
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-11 Score=91.48 Aligned_cols=129 Identities=27% Similarity=0.402 Sum_probs=93.6
Q ss_pred ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccC
Q 041851 11 LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIG 88 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~ 88 (151)
|..+.+|..|.++.|+++.+|. .|..+++|+.|++.+|+... +. - -.|.++++|+.+.+.+|++..+.+ .+.
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve---~--ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VE---G--LTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee-eh---h--hhhcCchhhhhhhhhhcCcccccCccee
Confidence 4556666777777777776664 55567777777777775211 11 1 357788889999999998887554 567
Q ss_pred CCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC---CCCCCcceEcccCC
Q 041851 89 QLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS---KLPCKLHELDAHHC 145 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l~l~~~ 145 (151)
.+.++++|+|+.|.++.+.. ++.+++.|++|+++.|.+-+.-+ ++.++|+.|+++.+
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 89999999999999985544 67789999999999986433222 34588999998854
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=2.4e-10 Score=87.90 Aligned_cols=110 Identities=22% Similarity=0.389 Sum_probs=89.7
Q ss_pred cccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCC
Q 041851 16 ALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSL 93 (151)
Q Consensus 16 ~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L 93 (151)
.++.|+++++.+. .+|..+..+++|+.|+++.|. +.+..| ..++.+++|+.|++++|.+++ +|..++.+++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~----l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS----IRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc----ccCcCC--hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 3778899999887 778888999999999999876 556677 778889999999999999987 88889999999
Q ss_pred CEEeCCCCCCc-cCCcchhcc-CccCEEeccCCcccccCC
Q 041851 94 EELDLQENNFE-RIPESITQR-SKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 94 ~~L~l~~n~~~-~~~~~~~~~-~~L~~l~l~~n~~~~~~~ 131 (151)
+.|++++|.++ .+|..+... .++..+++.+|..+-..|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999888 888877653 466788888886544333
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=6.8e-12 Score=97.03 Aligned_cols=138 Identities=28% Similarity=0.371 Sum_probs=109.3
Q ss_pred cCCCCChhc-cCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDEL-GNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~-~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
.++..|..- ..++.|+.|++.+|.++ .+.+.+..+.+|+.|++++|+. . .+|. ..+.++..|+.|++++|.+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL----~-~fpa-s~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL----N-SFPA-SKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc----c-cCCH-HHHhchHHhHHHhcccchh
Confidence 444555221 25667899999999998 6777799999999999999872 2 2331 3566788999999999999
Q ss_pred CccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccccc--CC-CCC-CCcceEcccCCccc
Q 041851 81 TRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQS--LS-KLP-CKLHELDAHHCTAL 148 (151)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~-~~~-~~l~~l~l~~~~~l 148 (151)
+.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|. +.. +| ..+ ++|++|+++++..+
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCccc
Confidence 999999999999999999999999999 78889999999999885 322 22 233 89999999988754
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=6.9e-11 Score=76.82 Aligned_cols=106 Identities=24% Similarity=0.252 Sum_probs=53.2
Q ss_pred hcc-CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCccC--c
Q 041851 10 ELG-NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITRLP--E 85 (151)
Q Consensus 10 ~~~-~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~--~ 85 (151)
.++ .+.+++.|++++|.++.+. .+..++.|+.|++++|+... . . +.+ ..+++|+.|++++|.+.++. .
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~----i-~--~~l~~~lp~L~~L~L~~N~I~~l~~l~ 107 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS----I-S--EGLDKNLPNLQELYLSNNKISDLNELE 107 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S------C--HHHHHH-TT--EEE-TTS---SCCCCG
T ss_pred chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc----c-c--cchHHhCCcCCEEECcCCcCCChHHhH
Confidence 344 5788999999999999875 47779999999999997322 1 1 122 25789999999999998743 4
Q ss_pred ccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851 86 NIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRY 123 (151)
Q Consensus 86 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~ 123 (151)
.+..+++|+.|++.+|.+...+. .+..+|+|+.||-..
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 67789999999999999885444 467889999998653
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.05 E-value=1.1e-11 Score=95.83 Aligned_cols=136 Identities=23% Similarity=0.354 Sum_probs=92.1
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhc--------------------------CCCCCeeeccccccCCcccc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFR--------------------------LNNIDLLSFQRSRGHKQMSL 56 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~--------------------------l~~L~~l~l~~n~~~~~~~~ 56 (151)
.++++|...++++.|++|++..|.+...|+.+.. ++.|+.|.+++|. ..+
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~----Ltd 373 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH----LTD 373 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc----ccc
Confidence 4566777777777777777777776655542111 1112233333332 112
Q ss_pred ccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC--
Q 041851 57 SLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL-- 133 (151)
Q Consensus 57 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-- 133 (151)
..- +.+.++..|+.|++++|++..+|. .+..+..|++|++++|.++.+|..+..++.|++|..-+| .+..+|..
T Consensus 374 ~c~--p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~ 450 (1081)
T KOG0618|consen 374 SCF--PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQ 450 (1081)
T ss_pred cch--hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhh
Confidence 222 345577788888898888888775 566788888888999988888888888888888888776 46777743
Q ss_pred CCCcceEcccCC
Q 041851 134 PCKLHELDAHHC 145 (151)
Q Consensus 134 ~~~l~~l~l~~~ 145 (151)
.++++.+|++.+
T Consensus 451 l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 451 LPQLKVLDLSCN 462 (1081)
T ss_pred cCcceEEecccc
Confidence 378888998843
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.97 E-value=1.4e-09 Score=84.86 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=19.4
Q ss_pred cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCC
Q 041851 69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP 107 (151)
Q Consensus 69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~ 107 (151)
+|+.|+++.|.++.+|..+. ++|+.|++++|.++.+|
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCc
Confidence 45555555555555544332 35556666555555444
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=1.7e-09 Score=83.31 Aligned_cols=101 Identities=27% Similarity=0.355 Sum_probs=81.6
Q ss_pred CCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccC
Q 041851 40 IDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSLEELDLQENNFE-RIPESITQRSKLG 117 (151)
Q Consensus 40 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~ 117 (151)
++.+++..|. +.+..| ..++.+++|+.|++++|.+.+ +|..++.+++|+.|++++|.++ .+|..++.+++|+
T Consensus 420 v~~L~L~~n~----L~g~ip--~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG----LRGFIP--NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCC----ccccCC--HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 5566777654 455666 778889999999999999986 8888999999999999999998 8898999999999
Q ss_pred EEeccCCcccccCCCCC----CCcceEcccCCc
Q 041851 118 RLSLRYCERLQSLSKLP----CKLHELDAHHCT 146 (151)
Q Consensus 118 ~l~l~~n~~~~~~~~~~----~~l~~l~l~~~~ 146 (151)
.|++++|.....+|..+ .++..+++.++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999998777887543 334566666544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=1e-10 Score=82.87 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=21.3
Q ss_pred hhccCcccccccccccccce-ecChhhhcCCC---CCeeeccccc
Q 041851 9 DELGNLEALWSLHAIGTAIR-EVPSSFFRLNN---IDLLSFQRSR 49 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~---L~~l~l~~n~ 49 (151)
..+..+++|+.|+++++.+. ..+..+..+.. |+.+++..|.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 34445556666666666654 22333333333 6666666543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.95 E-value=1.5e-09 Score=84.75 Aligned_cols=127 Identities=24% Similarity=0.404 Sum_probs=58.6
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..+. .+|+.|++++|.+..+|..+. .+|+.|+++.|.. . .+| +.+. .+|+.|++++|.++.
T Consensus 231 ~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L----~-~LP--~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 231 QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI----S-CLP--ENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc----C-ccc--cccC--CCCcEEECCCCcccc
Confidence 3445554432 356666666666665555432 3456666655431 1 122 1111 234444444444443
Q ss_pred cCcccC-------------------CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcc
Q 041851 83 LPENIG-------------------QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDA 142 (151)
Q Consensus 83 ~~~~~~-------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l 142 (151)
+|..+. ..++|+.|++++|.++.+|..+. ++|+.|++++|. +..+|. .+++|+.|++
T Consensus 298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdL 374 (754)
T PRK15370 298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLPPTITTLDV 374 (754)
T ss_pred CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhcCCcCEEEC
Confidence 322111 11345555555555554444332 455666666553 344443 2345566666
Q ss_pred cCC
Q 041851 143 HHC 145 (151)
Q Consensus 143 ~~~ 145 (151)
++|
T Consensus 375 s~N 377 (754)
T PRK15370 375 SRN 377 (754)
T ss_pred CCC
Confidence 555
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=4.8e-09 Score=81.96 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=63.9
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC----------C----CCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL----------D----GLH 68 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~----------~----~~~ 68 (151)
++..+|+.+. ++|+.|++.+|.++.+|.. .++|+.|++++|.... ++. .+ ..+ . ...
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~-lp--~sL~~L~Ls~N~L~~Lp~lp~ 282 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPV-LP--PGLLELSIFSNPLTHLPALPS 282 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccC-cc--cccceeeccCCchhhhhhchh
Confidence 4556776553 3677777777777766542 4567777777664322 110 00 000 0 012
Q ss_pred cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhc----------------c-CccCEEeccCCcccccCC
Q 041851 69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ----------------R-SKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~-~~L~~l~l~~n~~~~~~~ 131 (151)
+|..|++++|.++.+|. .+++|+.|++++|.++.+|..... + .+|+.|++++|. +..+|
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP 358 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP 358 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence 34455555555555443 235666666666666654431110 0 245666666553 44455
Q ss_pred CCCCCcceEccc
Q 041851 132 KLPCKLHELDAH 143 (151)
Q Consensus 132 ~~~~~l~~l~l~ 143 (151)
..+.++..|+++
T Consensus 359 ~lp~~L~~L~Ls 370 (788)
T PRK15387 359 TLPSELYKLWAY 370 (788)
T ss_pred CCCcccceehhh
Confidence 444444444444
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=1.3e-10 Score=86.28 Aligned_cols=113 Identities=28% Similarity=0.474 Sum_probs=60.1
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
.+-.+|..+.++..+++++++.|.+.-+|..+..++ |+.+-+++|+.. .+| +.++...++..++.+.|.+..
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-----~lp--~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-----SLP--EEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-----cCC--cccccchhHHHhhhhhhhhhh
Confidence 345567777777777777777777777766666665 666666666521 223 334444455555555555544
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+|..++.+..|+.|.+..|.+..+|..+.. -.|..||++.|
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScN 221 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCN 221 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccC
Confidence 444444444444444444444444443332 12444444443
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.90 E-value=7.2e-09 Score=81.00 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCE
Q 041851 16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE 95 (151)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~ 95 (151)
+-..|+++++.++.+|+.+. .+++.|.+..|... .+| . ..++|+.|++++|.++.+|.. .++|+.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-----~LP--~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-----SLP--A---LPPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-----CCC--C---CCCCCcEEEecCCccCcccCc---ccccce
Confidence 45678999999999988664 47999999988622 233 2 246788999999988876642 234555
Q ss_pred EeCCCCCCccC
Q 041851 96 LDLQENNFERI 106 (151)
Q Consensus 96 L~l~~n~~~~~ 106 (151)
|++++|.++.+
T Consensus 267 L~Ls~N~L~~L 277 (788)
T PRK15387 267 LSIFSNPLTHL 277 (788)
T ss_pred eeccCCchhhh
Confidence 55555544433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=1.1e-10 Score=86.56 Aligned_cols=135 Identities=28% Similarity=0.404 Sum_probs=112.1
Q ss_pred ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+++.++|..+..+..|..+.++.|.+-.+|..+..+..|+.++++.|+. + ..| ..+..++ |+.+.+++|+++
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql----S-~lp--~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL----S-HLP--DGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh----h-cCC--hhhhcCc-ceeEEEecCccc
Confidence 4667889888889999999999999999999999999999999998862 2 344 4555666 999999999999
Q ss_pred ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCC--CCcceEcccCC
Q 041851 82 RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLP--CKLHELDAHHC 145 (151)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~l~~l~l~~~ 145 (151)
.+|+.++....|..|+.+.|.+..+|..++++.+|+.+.+..|. +..+|... -.|..||++++
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScN 221 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCN 221 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccC
Confidence 99999999999999999999999999999999999999999984 56666432 33567777644
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=5.6e-09 Score=56.36 Aligned_cols=40 Identities=35% Similarity=0.596 Sum_probs=18.9
Q ss_pred CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCC
Q 041851 63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENN 102 (151)
Q Consensus 63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~ 102 (151)
.|..+++|+.+++++|.++.++ ..+..+++|+++++++|.
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444555555544444432 244455555555555543
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.9e-09 Score=76.46 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=44.5
Q ss_pred cccccccccccee-----cChhhhcC-CCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-----cCc
Q 041851 17 LWSLHAIGTAIRE-----VPSSFFRL-NNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-----LPE 85 (151)
Q Consensus 17 L~~L~l~~~~i~~-----~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~ 85 (151)
|++|++++|.++. +...+..+ ++|+.+++..|..........+ ..+..+.+++.+++++|.+++ ++.
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA--KALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH--HHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 5666666555541 11223334 5555666554432110000111 223334445555555555542 122
Q ss_pred ccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCC
Q 041851 86 NIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 86 ~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n 124 (151)
.+...++|+.|++++|.++. +...+..+++|+.|++++|
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 23333455555555554431 1122333444555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=5.5e-09 Score=76.41 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=25.1
Q ss_pred cCCCCChhccCcc-cccccccccccceecChhhhcCCCCCeeeccccc
Q 041851 3 HLQRLPDELGNLE-ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR 49 (151)
Q Consensus 3 ~l~~lp~~~~~l~-~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~ 49 (151)
++.++|......+ +|+.|++++|.+..+|..+..++.|+.|++..|.
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3444555544443 5555555555555554445555555555555554
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=1.4e-08 Score=54.80 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=50.0
Q ss_pred CcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851 68 HTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 68 ~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~ 125 (151)
++|+.+++++|.++.+++ .+..+++|++|++++|.++.++. .+.++++|+.+++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468899999999999764 67789999999999999996654 77899999999999985
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.3e-08 Score=74.53 Aligned_cols=135 Identities=30% Similarity=0.437 Sum_probs=93.2
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..++.+++|+.|++++|.++.+|......+.|+.+++++|.... .| ........|+.+.+++|.+..
T Consensus 151 ~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~-----l~--~~~~~~~~L~~l~~~~N~~~~ 223 (394)
T COG4886 151 KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-----LP--PEIELLSALEELDLSNNSIIE 223 (394)
T ss_pred chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc-----Cc--hhhhhhhhhhhhhhcCCccee
Confidence 56677778889999999999999999998866688899999999886322 22 222233457777777776555
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC--CCCcceEcccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHC 145 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~ 145 (151)
.+..+..+.++..+.+.+|.+..++..++.+++++.+++++|. +.+++.. ..+++.|++++.
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccccccccCccCEEeccCc
Confidence 5556666777777777777666556666677777777777763 4555442 255666666543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=3e-09 Score=74.04 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=64.8
Q ss_pred cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCC
Q 041851 12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLS 91 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~ 91 (151)
..+..|+++|+++|.|+.+-.+..-.+.++.++++.|+... . .++..+++|+.|++++|.++.+..+--.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~----v----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT----V----QNLAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee----e----hhhhhcccceEeecccchhHhhhhhHhhhc
Confidence 34567777777777777666666667777777777665211 1 335566677777777777665443334455
Q ss_pred CCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851 92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 125 (151)
++.+|.++.|.+..+. .+..+-+|..||+++|.
T Consensus 353 NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred CEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 6666666666655432 34455566666666663
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.59 E-value=1.9e-09 Score=77.06 Aligned_cols=119 Identities=28% Similarity=0.392 Sum_probs=79.5
Q ss_pred CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEccc-CCCC
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTD-CGIT 81 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~l~ 81 (151)
+.++|..+ .+....+++..|.|+.+|+ +|..+++|+.+++++|. ++...| ++|..+.++..+-+.+ |+|+
T Consensus 58 L~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p--~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 58 LTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAP--DAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc----hhhcCh--HhhhhhHhhhHHHhhcCCchh
Confidence 45566443 2456678888888887765 67778888888888776 565666 7777777776665555 7787
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCC
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
++|+ .++.+..++-|.+.-|.+. .....+.+++++.-|.+..|. +..++
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~ 180 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSIC 180 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhc
Confidence 7664 5566777777777766666 334466667777666666653 34444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=4.6e-09 Score=73.12 Aligned_cols=114 Identities=23% Similarity=0.215 Sum_probs=89.3
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
.|..+.+++.-.+.++.|++++|++..+.. +..+.+|+.+++++|.... +. ..=..+.+++.|.++.|.+.+
T Consensus 295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~------Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 295 LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CV------GWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hh------hhHhhhcCEeeeehhhhhHhh
Confidence 466677888888999999999999987754 7889999999999886322 11 111245678889999998887
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~ 125 (151)
+. +++.+-+|..|++++|.+..+.. .++.+|.|+++.+.+|+
T Consensus 367 LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 367 LS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 54 66778888999999998885433 67888999999999987
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.55 E-value=1.7e-09 Score=77.36 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=95.8
Q ss_pred ccCCCCC-hhccCcccccccccccccceec-ChhhhcCCCCCeeeccc-cccCCccccccccccCCCCCCcccEEEcccC
Q 041851 2 FHLQRLP-DELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQR-SRGHKQMSLSLPITLSLDGLHTLTYLNLTDC 78 (151)
Q Consensus 2 ~~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 78 (151)
++|..|| ..|..+++|+.|+++.|.|+.+ |..|..++++..+-+.. |+ +.+... ..|+.+.+++-|.+.-|
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk----I~~l~k--~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK----ITDLPK--GAFGGLSSLQRLLLNAN 150 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc----hhhhhh--hHhhhHHHHHHHhcChh
Confidence 3677888 6788999999999999999966 77899999987776654 65 444444 67888999999988888
Q ss_pred CCCc-cCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851 79 GITR-LPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 79 ~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~ 125 (151)
.+.- ..+.++.++++..|.+..|.+..++. .+..+..++.+.+..|+
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 8887 44578899999999999998887766 67777888888888887
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=1.6e-07 Score=47.11 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=19.9
Q ss_pred cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccC
Q 041851 69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERI 106 (151)
Q Consensus 69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~ 106 (151)
+|+.|++++|++++++..++.+++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555555533
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.9e-08 Score=70.29 Aligned_cols=111 Identities=21% Similarity=0.142 Sum_probs=61.7
Q ss_pred hccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc--cC
Q 041851 10 ELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR--LP 84 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~ 84 (151)
....|++++.|+++.|-+.. +-.-..++++|+.|+++.|+......... -..++.++.|.++.|+++. +.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----TLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----hhhhhhhheEEeccCCCCHHHHH
Confidence 55678888888888887662 22345678888888888886433222111 1134566667777776664 33
Q ss_pred cccCCCCCCCEEeCCCCC-CccCCcchhccCccCEEeccCCc
Q 041851 85 ENIGQLSSLEELDLQENN-FERIPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 85 ~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~ 125 (151)
..+..+|++..|++.+|. +.........+..|+.|++++|+
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 334455566666665552 11111112233345555555554
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=6.7e-09 Score=79.53 Aligned_cols=116 Identities=27% Similarity=0.201 Sum_probs=72.5
Q ss_pred CccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 1 IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 1 ~~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
|+++..+...+.-++.+++|++++|.++++- .+..+++|++||++.|.... ++.-.+ ..+ .|..|++.+|.+
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~-----~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSM-----VGC-KLQLLNLRNNAL 244 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccch-----hhh-hheeeeecccHH
Confidence 4455566666667777777777777777553 56667777777777764221 111111 112 277777777777
Q ss_pred CccCcccCCCCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCc
Q 041851 81 TRLPENIGQLSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~ 125 (151)
+++. .+..+.+|+.||+++|-+.... ..++.+..|+.|.+.+|+
T Consensus 245 ~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 TTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7643 4556777777777777665322 245566677777777776
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.34 E-value=3.7e-07 Score=71.09 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=87.3
Q ss_pred ccccccccccccc-eecC-hh-hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCC
Q 041851 15 EALWSLHAIGTAI-REVP-SS-FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLS 91 (151)
Q Consensus 15 ~~L~~L~l~~~~i-~~~~-~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~ 91 (151)
.+|++|++++... ...+ .. ...+|+|++|.+.+-. ...+++- ....++++|.+||+++++++.+ .++..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~---~~~~dF~--~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ---FDNDDFS--QLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce---ecchhHH--HHhhccCccceeecCCCCccCc-HHHhccc
Confidence 4789999988653 2222 22 3348999999998432 1222223 3455789999999999999987 4788999
Q ss_pred CCCEEeCCCCCCccCCc--chhccCccCEEeccCCccccc---------CCCCCCCcceEcccC
Q 041851 92 SLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQS---------LSKLPCKLHELDAHH 144 (151)
Q Consensus 92 ~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~---------~~~~~~~l~~l~l~~ 144 (151)
+|+.|.+.+-.+..... .+..+++|++||+|.-..... -+..+++|+.||.++
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999998877764333 577899999999997543221 123468888888774
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=7e-07 Score=44.76 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=33.7
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK 132 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 132 (151)
++|++|++++|.++.+|..++.+++|+.|++++|+ +.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57899999999999999889999999999999995 555543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=4.2e-07 Score=72.48 Aligned_cols=126 Identities=23% Similarity=0.340 Sum_probs=72.0
Q ss_pred CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCC
Q 041851 13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLS 91 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~ 91 (151)
.....+.+.+.++.+..++.+ ...+.|++|-+..|.. . ....+ .+.|..++.|++||+++|. +..+|..++.+-
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~-~--l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSD-W--LLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred chhheeEEEEeccchhhccCC-CCCCccceEEEeecch-h--hhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 345556666666665544332 1233566666665531 0 01111 0335567777777777654 334777777777
Q ss_pred CCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEccc
Q 041851 92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAH 143 (151)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~ 143 (151)
+|++|+++++.++.+|..+..+..|.+|++..+.....+|.+ +.+|++|.+.
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 777777777777777777777777777777765544444332 3556666554
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=5.4e-08 Score=60.43 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=80.4
Q ss_pred ccccccccccccceecChh---hhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCccCcccCCC
Q 041851 15 EALWSLHAIGTAIREVPSS---FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITRLPENIGQL 90 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~---~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~l 90 (151)
+.+..++++.+.+-.+++. +.....|+..++++|.. .++| +.|. .++.++.+++.+|.++++|.++..|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-----k~fp--~kft~kf~t~t~lNl~~neisdvPeE~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-----KKFP--KKFTIKFPTATTLNLANNEISDVPEELAAM 99 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-----hhCC--HHHhhccchhhhhhcchhhhhhchHHHhhh
Confidence 4566788888876655543 33344566678887752 2334 3333 4568899999999999999999999
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
+.|+.++++.|.+...|+.+..+.++..|+..+|. ...+|
T Consensus 100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEID 139 (177)
T ss_pred HHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence 99999999999999888888878888888887764 44444
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.4e-08 Score=69.80 Aligned_cols=132 Identities=21% Similarity=0.195 Sum_probs=96.1
Q ss_pred cCcccccccccccccceecC--hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-C-ccc
Q 041851 12 GNLEALWSLHAIGTAIREVP--SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-P-ENI 87 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~-~~~ 87 (151)
+++++|+.+.+.+.+++..+ .....+++++.|+++.|-... ..... .....+++|+.|+++.|.+... . ..-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHH--HHHHhcccchhcccccccccCCccccch
Confidence 46788999999999888665 367789999999999886322 11222 4566889999999999998752 2 223
Q ss_pred CCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCccc--ccCC-CCCCCcceEcccCCcc
Q 041851 88 GQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCERL--QSLS-KLPCKLHELDAHHCTA 147 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~--~~~~-~~~~~l~~l~l~~~~~ 147 (151)
..++++..|.++.|.++ .+......+|++..|++.+|..+ ...+ +++..|+.|+++++..
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 36789999999999988 34445567899999999999532 2222 3457788888886543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=9.9e-07 Score=70.42 Aligned_cols=115 Identities=25% Similarity=0.360 Sum_probs=92.4
Q ss_pred cCCCCChhccCccccccccccccc--ceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTA--IREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~--i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
++..++... .++++++|-+.+|. +..++. .|..++.|+.|++++|. -...+| +.++.+-+|++|+++++.
T Consensus 534 ~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~----~l~~LP--~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 534 KIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS----SLSKLP--SSIGELVHLRYLDLSDTG 606 (889)
T ss_pred chhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC----ccCcCC--hHHhhhhhhhcccccCCC
Confidence 445555554 34579999999886 555554 47779999999999765 445778 888899999999999999
Q ss_pred CCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCC
Q 041851 80 ITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 80 l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n 124 (151)
++.+|..++.+..|.+|++..+... .++.....+.+|++|.+..-
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 9999999999999999999988655 55666677899999998764
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=2.8e-06 Score=56.06 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=38.5
Q ss_pred cCCCCCCcccEEEcccCCCCccCcccCC-CCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCc
Q 041851 62 LSLDGLHTLTYLNLTDCGITRLPENIGQ-LSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~-l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~ 125 (151)
+.+..++.|.+|.+++|+|.++.+.+.. ++++..|.+.+|.+..+-. .+..++.|+.|.+-+|+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3455666677777777777665444443 3566777777766653322 34556666776666665
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.1e-05 Score=59.13 Aligned_cols=116 Identities=26% Similarity=0.433 Sum_probs=62.7
Q ss_pred ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC-CCCccCcccCC
Q 041851 11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC-GITRLPENIGQ 89 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~ 89 (151)
+..+.+++.|++++|.++.+|. + -.+|+.|.+..+. . ....| +.+ ..+|+.|.+++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~---n-LtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCN---N-LTTLP--GSI--PEGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCC---C-cccCC--chh--hhhhhheEccCccccccccc----
Confidence 3456788889999888887762 1 2358888887432 1 12223 222 136777777776 4544443
Q ss_pred CCCCCEEeCCCCC---CccCCcchhcc------------------CccCEEeccCCcccccCC-CCCCCcceEcccC
Q 041851 90 LSSLEELDLQENN---FERIPESITQR------------------SKLGRLSLRYCERLQSLS-KLPCKLHELDAHH 144 (151)
Q Consensus 90 l~~L~~L~l~~n~---~~~~~~~~~~~------------------~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~ 144 (151)
.|+.|++.++. +..+|..+..+ ++|++|++++|.... +| ..+.+|+.|.+..
T Consensus 113 --sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHI 186 (426)
T ss_pred --ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEecc
Confidence 23444444432 22344322221 257777777765432 33 2456666666654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.5e-07 Score=72.46 Aligned_cols=123 Identities=20% Similarity=0.127 Sum_probs=90.1
Q ss_pred cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851 14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL 93 (151)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L 93 (151)
+-.|...+.++|++..+-.++.-++.+++|++++|+... . +++..++.|+.||+++|.++-+|..-..-.+|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~----v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK----V----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKL 234 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh----h----HHHHhcccccccccccchhccccccchhhhhh
Confidence 456778888888888777778888999999999887322 1 45667889999999999999877644444569
Q ss_pred CEEeCCCCCCccCCcchhccCccCEEeccCCccc--ccCCCC--CCCcceEcccCC
Q 041851 94 EELDLQENNFERIPESITQRSKLGRLSLRYCERL--QSLSKL--PCKLHELDAHHC 145 (151)
Q Consensus 94 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~--~~~l~~l~l~~~ 145 (151)
+.|.+++|.++.+.. +.++.+|..||++.|-.. .++... ...|..|.+.++
T Consensus 235 ~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 999999999887754 778899999999987422 222221 245555555554
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=1e-05 Score=53.52 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=71.5
Q ss_pred cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCCCCCC
Q 041851 16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQLSSL 93 (151)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~l~~L 93 (151)
+...+|+.+|.+..++ .+..++.|.+|.+.+|+.+. ..| ..-..++++..|.+.+|++.++. +.+..+++|
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~----I~p--~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITR----IDP--DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCccee----ecc--chhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 5566788888776443 25567888899999887433 333 22234567888999999988743 367788899
Q ss_pred CEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851 94 EELDLQENNFERIPE----SITQRSKLGRLSLRY 123 (151)
Q Consensus 94 ~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~ 123 (151)
++|.+-+|.++.... .+..++++++||+++
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999998888774333 456778888888875
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=9.3e-07 Score=65.30 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=74.9
Q ss_pred hccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851 10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ 89 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~ 89 (151)
.+..+++++.+++.+|.+..+...+..+.+|++++++.|.. ... ..+..+..|+.|++.+|.+..+. .+..
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I----~~i----~~l~~l~~L~~L~l~~N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI----TKL----EGLSTLTLLKELNLSGNLISDIS-GLES 160 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecccccc----ccc----cchhhccchhhheeccCcchhcc-CCcc
Confidence 35677788888888888876654466688888888887762 221 23455666888888888887654 4555
Q ss_pred CCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCc
Q 041851 90 LSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCE 125 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~ 125 (151)
++.|+.+++++|.+..+... ...+..++.+.+.+|.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 78888888888887755542 3566677777777764
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.1e-07 Score=66.12 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=20.9
Q ss_pred cccccccccccce--ecChhhhcCCCCCeeeccccc
Q 041851 16 ALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSR 49 (151)
Q Consensus 16 ~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~ 49 (151)
.+++||++...++ .+-.-+..+.+|+.+.+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~ 221 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR 221 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc
Confidence 4677777776666 333345556667777666554
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=6.6e-07 Score=63.26 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=18.8
Q ss_pred cCcccccccccccccce-ecCh----hhhcCCCCCeeecccc
Q 041851 12 GNLEALWSLHAIGTAIR-EVPS----SFFRLNNIDLLSFQRS 48 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~-~~~~----~~~~l~~L~~l~l~~n 48 (151)
..+++|+.+++++|.+. ..++ -+.....|++|.+.+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 34456666666666655 2222 2233445556655544
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2.8e-06 Score=62.81 Aligned_cols=103 Identities=25% Similarity=0.347 Sum_probs=61.5
Q ss_pred CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccC-CCCCCcccEEEcccCCCCccCcccCCCC
Q 041851 13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS-LDGLHTLTYLNLTDCGITRLPENIGQLS 91 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~~~~l~ 91 (151)
.+..+..+.+..|.++.+-..+..+.++..+++.+|.... . .. +..+.+|+.+++++|.|+.+. .+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-----i---~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-----I---ENLLSSLVNLQVLDLSFNKITKLE-GLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-----c---ccchhhhhcchheecccccccccc-chhhcc
Confidence 3445555556666665533335556667777777665211 1 22 455677777777777777643 345556
Q ss_pred CCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851 92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 125 (151)
.|+.|++.+|.++.+.. +..++.|+.++++.|.
T Consensus 141 ~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 141 LLKELNLSGNLISDISG-LESLKSLKLLDLSYNR 173 (414)
T ss_pred chhhheeccCcchhccC-CccchhhhcccCCcch
Confidence 67777777777765543 3336667777777764
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=5e-06 Score=58.95 Aligned_cols=136 Identities=20% Similarity=0.234 Sum_probs=87.2
Q ss_pred hhccCcccccccccccccceecC-hh-------------hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEE
Q 041851 9 DELGNLEALWSLHAIGTAIREVP-SS-------------FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLN 74 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~~~~-~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~ 74 (151)
..+.++..|++|.+.+|.+.... .. +..-+.|+.+...+|+.-........ ..+...+.|+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A--~~~~~~~~leevr 191 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA--EAFQSHPTLEEVR 191 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH--HHHHhccccceEE
Confidence 34566778888888888876322 11 12245678888887763221111122 4455667888888
Q ss_pred cccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-c----CCcchhccCccCEEeccCCccc--------ccCCCCCCC
Q 041851 75 LTDCGITR-----LPENIGQLSSLEELDLQENNFE-R----IPESITQRSKLGRLSLRYCERL--------QSLSKLPCK 136 (151)
Q Consensus 75 l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~-~----~~~~~~~~~~L~~l~l~~n~~~--------~~~~~~~~~ 136 (151)
+..|+|.. +...+.++++|+.|+|..|.++ . +-..+..+++|+.++++.|..- ..+....++
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~ 271 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS 271 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence 88888763 2346778889999999888776 2 2334566678888888887421 222234577
Q ss_pred cceEcccCCc
Q 041851 137 LHELDAHHCT 146 (151)
Q Consensus 137 l~~l~l~~~~ 146 (151)
|+.+.+.+|.
T Consensus 272 L~vl~l~gNe 281 (382)
T KOG1909|consen 272 LEVLELAGNE 281 (382)
T ss_pred CceeccCcch
Confidence 8888877664
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=1.8e-06 Score=53.78 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=73.9
Q ss_pred ccCcccccccccccccceecChhhhc-CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851 11 LGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ 89 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~ 89 (151)
+.....|+..++++|.+...|+.+.. ++..+.+++++|. +. +.| +.+..|+.|+.++++.|.+.-.|+-+..
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne----is-dvP--eE~Aam~aLr~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE----IS-DVP--EELAAMPALRSLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh----hh-hch--HHHhhhHHhhhcccccCccccchHHHHH
Confidence 33445677789999999999887765 4578999999886 32 345 5577899999999999999988887777
Q ss_pred CCCCCEEeCCCCCCccCCcch
Q 041851 90 LSSLEELDLQENNFERIPESI 110 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~~~ 110 (151)
+.++..|+..+|....+|-.+
T Consensus 122 L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred HHhHHHhcCCCCccccCcHHH
Confidence 889999999998887777653
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=6.5e-05 Score=51.40 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCcccEEEcccC--CCCc-cCcccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCC
Q 041851 66 GLHTLTYLNLTDC--GITR-LPENIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 66 ~~~~L~~l~l~~~--~l~~-~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n 124 (151)
.+++|+.|.++.| ++.. ++.....+++|+++++++|.++. -...+..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3444444444444 2222 22222223445555555544441 1112333444444444444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00053 Score=50.52 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccc-cC--CCCCCCcceEcccCCcc
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQ-SL--SKLPCKLHELDAHHCTA 147 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~--~~~~~~l~~l~l~~~~~ 147 (151)
++|++|+++++....+|..+. .+|+.|+++.+.... .+ +.++.++ .+.+.+|-.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 478899998887666564333 478889987652111 11 1344566 777777643
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.2e-06 Score=59.13 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=33.1
Q ss_pred ccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 11 LGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+.+|.+|+-|.+.++.+. .+-..+..=.+|+.++++.+.+ +..... --.+..++.|..|++++|.+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG---~t~n~~-~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG---FTENAL-QLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc---cchhHH-HHHHHhhhhHhhcCchHhhcc
Confidence 455666777777776665 3333344455566666663322 211111 012334555555555555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=2.6e-05 Score=61.03 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCc--cCcccCCCCCCCEEeCCCCCCccCCcchhcc
Q 041851 37 LNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESITQR 113 (151)
Q Consensus 37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 113 (151)
-.+|++|++++ ........+ ..++ .+|+|+.|.+.+-.+.. +.+....+++|..||++++.++.+ ..++++
T Consensus 121 r~nL~~LdI~G---~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISG---SELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHhhhhcCccc---cchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 45688888874 222333344 3333 48899999998876543 667778999999999999999877 668899
Q ss_pred CccCEEeccCCcccc--cCCCC--CCCcceEcccCCc
Q 041851 114 SKLGRLSLRYCERLQ--SLSKL--PCKLHELDAHHCT 146 (151)
Q Consensus 114 ~~L~~l~l~~n~~~~--~~~~~--~~~l~~l~l~~~~ 146 (151)
++|++|.+.+=.+.. ++-.. .++|+.||++.-+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 999999987643221 12222 3899999998543
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=5.6e-05 Score=53.08 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=45.5
Q ss_pred Ccccccccccccccce---ecChhhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCc--cCcc
Q 041851 13 NLEALWSLHAIGTAIR---EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITR--LPEN 86 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~--~~~~ 86 (151)
.+..++.+|+.+|.++ ++..-...++.+++|+++.|+... .+. .. -...+|+++.+.+..+.. ....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~---~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIK---SLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccc---cCcccccceEEEEEcCCCCChhhhhhh
Confidence 3445666666666665 233334556667777776665211 111 11 134466666666666553 3334
Q ss_pred cCCCCCCCEEeCCCCCCc
Q 041851 87 IGQLSSLEELDLQENNFE 104 (151)
Q Consensus 87 ~~~l~~L~~L~l~~n~~~ 104 (151)
+..+|.++.++++.|...
T Consensus 142 l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhcchhhhhhhhccchhh
Confidence 555666666666666443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.0005 Score=47.16 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=67.1
Q ss_pred cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCC
Q 041851 12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQ 89 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~ 89 (151)
.....++.+.+.+..++.+. .+..+++|+.|.++.|... +....+ .....+++|+++++++|.++.+. ..+..
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~--~~~~l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRR--VSGGLE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCccc--ccccce--ehhhhCCceeEEeecCCccccccccchhhh
Confidence 34556666666666655332 2445788888888877311 233333 23445588999999999888521 24556
Q ss_pred CCCCCEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851 90 LSSLEELDLQENNFERIPE----SITQRSKLGRLSLRY 123 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~ 123 (151)
+.+|..|++.+|..+.+.. .+..+++|++++-..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7778888888887664322 345667777776543
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=2.1e-05 Score=54.60 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=31.0
Q ss_pred CCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCccc
Q 041851 66 GLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERL 127 (151)
Q Consensus 66 ~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~ 127 (151)
.|+.|++|.|+.|.|+.+. .+.++++|++|+|..|.+..+.. -+.++++|+.|-+..|+-+
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4555555555555555432 34455555555555555554433 2344555555555555433
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.81 E-value=0.0092 Score=36.53 Aligned_cols=103 Identities=13% Similarity=0.244 Sum_probs=55.5
Q ss_pred hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851 10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI 87 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~ 87 (151)
.+..+++|+.+.+.. .+..++. .+..+.+++.+.+..+- ..... ..|..+.+++.+.+.. .+..++. .+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~-----~~i~~--~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNL-----TSIGD--NAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTT-----SCE-T--TTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccccc-----cccce--eeeecccccccccccc-cccccccccc
Confidence 456777888888875 5666644 67778789988887531 11112 4577777899998865 5555443 55
Q ss_pred CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccC
Q 041851 88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRY 123 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~ 123 (151)
..+++++.+.+..+ +..++. .+.+. .++.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 56889999998765 554433 45555 788887765
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00092 Score=47.18 Aligned_cols=104 Identities=20% Similarity=0.178 Sum_probs=65.9
Q ss_pred ccccccccccceecCh--hhhc-CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCccc-CCCCC
Q 041851 17 LWSLHAIGTAIREVPS--SFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSS 92 (151)
Q Consensus 17 L~~L~l~~~~i~~~~~--~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~l~~ 92 (151)
+..+-+.++.|..... .++. ...++.+++++|.... .+ ++. ..+.+++.+++|+++-|.+...-+.+ ....+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Ws-eI~--~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WS-EIG--AILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HH-HHH--HHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3344455555543322 2222 4557888999887322 11 222 35668899999999999887622233 45678
Q ss_pred CCEEeCCCCCCc--cCCcchhccCccCEEeccCC
Q 041851 93 LEELDLQENNFE--RIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 93 L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n 124 (151)
++.|-+.++.+. .....+..+|.++.+.++.|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 999999888765 44455667777778877776
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.52 E-value=0.00065 Score=28.51 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=14.4
Q ss_pred cccccccccccceecChhhh
Q 041851 16 ALWSLHAIGTAIREVPSSFF 35 (151)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~ 35 (151)
+|++|++++|.++.+|+++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 46788888888777776543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00013 Score=50.81 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=61.1
Q ss_pred cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc--ccCCCC
Q 041851 14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE--NIGQLS 91 (151)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~l~ 91 (151)
+.++..|+.-+++++++.- ...|+.|+.+.++-|+ +..- ..+..++.|+.+.|..|.|.++.. .+..++
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk----IssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK----ISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccc----cccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 4556667777777765532 3457778888887665 3322 336667777888888877776432 556777
Q ss_pred CCCEEeCCCCCCc-cCCc-----chhccCccCEEe
Q 041851 92 SLEELDLQENNFE-RIPE-----SITQRSKLGRLS 120 (151)
Q Consensus 92 ~L~~L~l~~n~~~-~~~~-----~~~~~~~L~~l~ 120 (151)
+|+.|.|..|..- ..+. .+-.+++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877777543 2221 234556666665
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.07 E-value=0.0038 Score=24.37 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=3.2
Q ss_pred CCEEeCCCCCC
Q 041851 93 LEELDLQENNF 103 (151)
Q Consensus 93 L~~L~l~~n~~ 103 (151)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333433333
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.81 E-value=0.01 Score=41.57 Aligned_cols=137 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred hhccCcccccccccccccce-ecCh----hhhcCCCCCeeeccccccCCcccc-cc-------ccccCCCCCCcccEEEc
Q 041851 9 DELGNLEALWSLHAIGTAIR-EVPS----SFFRLNNIDLLSFQRSRGHKQMSL-SL-------PITLSLDGLHTLTYLNL 75 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~-~~~~----~~~~l~~L~~l~l~~n~~~~~~~~-~~-------~~~~~~~~~~~L~~l~l 75 (151)
+.+-.|+.++..++++|.+. ..|+ .++....+.+|.+.+|. ...+.+ .+ ..+.....-+.|+++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34567888999999999887 4443 34455678888888773 221111 00 10011224456888888
Q ss_pred ccCCCCccCc-----ccCCCCCCCEEeCCCCCCc-c-CCc----chhccCccCEEeccCCcccc-------cCCCCCCCc
Q 041851 76 TDCGITRLPE-----NIGQLSSLEELDLQENNFE-R-IPE----SITQRSKLGRLSLRYCERLQ-------SLSKLPCKL 137 (151)
Q Consensus 76 ~~~~l~~~~~-----~~~~l~~L~~L~l~~n~~~-~-~~~----~~~~~~~L~~l~l~~n~~~~-------~~~~~~~~l 137 (151)
+.|++...+. .+..-..+....+..|.+. . +.. .+..+.+|++|+++.|.+.. ..-+.++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 8887765443 2222356777777777765 2 111 23455678888888775321 111223556
Q ss_pred ceEcccCCc
Q 041851 138 HELDAHHCT 146 (151)
Q Consensus 138 ~~l~l~~~~ 146 (151)
+.|.+..|-
T Consensus 245 rEL~lnDCl 253 (388)
T COG5238 245 RELRLNDCL 253 (388)
T ss_pred hhccccchh
Confidence 777776663
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.29 E-value=0.0032 Score=47.09 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=63.3
Q ss_pred Cccccccccccccc-cee--cChhhhcCCCCCeeeccccccCCcccccc-ccccCCCCCCcccEEEcccCC-CCc--cCc
Q 041851 13 NLEALWSLHAIGTA-IRE--VPSSFFRLNNIDLLSFQRSRGHKQMSLSL-PITLSLDGLHTLTYLNLTDCG-ITR--LPE 85 (151)
Q Consensus 13 ~l~~L~~L~l~~~~-i~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~-l~~--~~~ 85 (151)
.++.++.+.+.++. ++. +-......+.|+.+++..+ +..+.... ........+++++.++++++. +++ +..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC--CLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc--ccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 35677777777654 333 2234556777888887742 11011000 000223345778888888877 665 222
Q ss_pred ccCCCCCCCEEeCCCCC-Cc--cCCcchhccCccCEEeccCCccc
Q 041851 86 NIGQLSSLEELDLQENN-FE--RIPESITQRSKLGRLSLRYCERL 127 (151)
Q Consensus 86 ~~~~l~~L~~L~l~~n~-~~--~~~~~~~~~~~L~~l~l~~n~~~ 127 (151)
....+++|+.|.+.++. ++ .+-.....++.|+.++++.|..+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22236788888876665 44 23233445677888888877654
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.51 E-value=0.046 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.731 Sum_probs=10.9
Q ss_pred CCCCEEeCCCCCCccCCc
Q 041851 91 SSLEELDLQENNFERIPE 108 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~ 108 (151)
++|+.|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.51 E-value=0.046 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.731 Sum_probs=10.9
Q ss_pred CCCCEEeCCCCCCccCCc
Q 041851 91 SSLEELDLQENNFERIPE 108 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~ 108 (151)
++|+.|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.45 E-value=0.0064 Score=42.61 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=72.5
Q ss_pred hhccCcccccccccccccceecC-hh-------------hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEE
Q 041851 9 DELGNLEALWSLHAIGTAIREVP-SS-------------FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLN 74 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~~~~-~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~ 74 (151)
+.++.-..|.+|.+++|.+..+. .. +.+-+.|+.+....|+...+...... ..+.....++.+.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a--~~l~sh~~lk~vk 191 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA--ALLESHENLKEVK 191 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH--HHHHhhcCceeEE
Confidence 45667778999999999977332 22 22457788999988874332111111 2233335788888
Q ss_pred cccCCCCc--cC----cccCCCCCCCEEeCCCCCCccC-----CcchhccCccCEEeccCCc
Q 041851 75 LTDCGITR--LP----ENIGQLSSLEELDLQENNFERI-----PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 75 l~~~~l~~--~~----~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~ 125 (151)
+..|+|+. +. ..+..+.+|..|++..|.++.. ..+.+.++.|+.|.+..|-
T Consensus 192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 88888773 11 2455678888888888877622 2244555667778777663
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.82 E-value=0.00085 Score=45.78 Aligned_cols=89 Identities=10% Similarity=0.144 Sum_probs=53.5
Q ss_pred hhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccC
Q 041851 9 DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIG 88 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~ 88 (151)
..+...+..+.||++.|++......++-+..+..++++.|. +. ..| ..++....+..++++.|+.+..|...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq----~~-~~~--~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ----IK-FLP--KDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh----Hh-hCh--hhHHHHHHHHHHHhhccchhhCCcccc
Confidence 34455666666777766655544445555555566666554 11 223 445555566666677776666666777
Q ss_pred CCCCCCEEeCCCCCCc
Q 041851 89 QLSSLEELDLQENNFE 104 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~ 104 (151)
..+++++++...|.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 7777777777766654
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.81 E-value=0.21 Score=30.38 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=48.8
Q ss_pred hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851 10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI 87 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~ 87 (151)
.+..+.+++.+.+.++ +..++. .+..+.+++.+.+..+. ..... ..|..+.+++.+.+..+ +..++. .+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~-----~~i~~--~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNL-----KSIGD--NAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT------EE-T--TTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccccc-----ccccc--ccccccccccccccCcc-ccEEchhhh
Confidence 3566778999999875 665543 67777789999886421 11112 45777889999998765 666443 45
Q ss_pred CCCCCCCEEeCCCCCCccCCc-chhccCcc
Q 041851 88 GQLSSLEELDLQENNFERIPE-SITQRSKL 116 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L 116 (151)
... .++.+.+.. .+..++. .+.++++|
T Consensus 101 ~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 101 SNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT--T--EEE-TT-B-SS----GGG-----
T ss_pred cCC-CceEEEECC-CccEECCccccccccC
Confidence 555 888888876 3343433 45555544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.015 Score=38.83 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred cCCCCCCcccEEEcccCC-CCc--cCcccCCCCCCCEEeCCCC-CCc-cCCcchhccCccCEEeccC
Q 041851 62 LSLDGLHTLTYLNLTDCG-ITR--LPENIGQLSSLEELDLQEN-NFE-RIPESITQRSKLGRLSLRY 123 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l~~L~~L~l~~n-~~~-~~~~~~~~~~~L~~l~l~~ 123 (151)
+++..+++++.+.+.+|. +.+ +...-+..++|+.|++++| .|+ .-...+..+++|+.|.+..
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 344455555555555554 222 1111113456666666654 344 2223445555666555554
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.82 E-value=0.025 Score=42.33 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=66.7
Q ss_pred hhccCcccccccccccc-c-ceecC----hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CC
Q 041851 9 DELGNLEALWSLHAIGT-A-IREVP----SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-IT 81 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~-~-i~~~~----~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~ 81 (151)
.....+++|+.|+++++ . +...+ .....+++++.+++.... .+.+..- ......+++|+.+.+.++. ++
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~isd~~l-~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG---LVTDIGL-SALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh---ccCchhH-HHHHhhCCCcceEccCCCCccc
Confidence 45567889999999873 2 22212 234456888899988543 1222211 0112237789999988887 66
Q ss_pred c--cCcccCCCCCCCEEeCCCCCCc---cCCcchhccCccCEEeccC
Q 041851 82 R--LPENIGQLSSLEELDLQENNFE---RIPESITQRSKLGRLSLRY 123 (151)
Q Consensus 82 ~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~ 123 (151)
+ +......+++|++|+++.+... .+......+++++.+.+..
T Consensus 284 ~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 284 DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 5 5455567888999999987543 2222333455555554443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=0.11 Score=34.80 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=49.7
Q ss_pred cccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCCCccCCc----chh-ccCccCEEeccCCcccccCCC----CCCCcc
Q 041851 69 TLTYLNLTDCGITR-LPENIGQLSSLEELDLQENNFERIPE----SIT-QRSKLGRLSLRYCERLQSLSK----LPCKLH 138 (151)
Q Consensus 69 ~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~~~L~~l~l~~n~~~~~~~~----~~~~l~ 138 (151)
.++.++-+++.|.. .-+.+..++.++.+.+.++. .+.. .++ -.++|+.|++++|+.+++..- -+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck--~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK--YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc--chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 47788888877764 34566677777777776653 2222 122 336888999998887766552 237777
Q ss_pred eEcccCCccc
Q 041851 139 ELDAHHCTAL 148 (151)
Q Consensus 139 ~l~l~~~~~l 148 (151)
.|.+.+.+..
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 7777665543
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.87 E-value=0.29 Score=21.08 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=10.4
Q ss_pred CCcceEcccCCcccc
Q 041851 135 CKLHELDAHHCTALE 149 (151)
Q Consensus 135 ~~l~~l~l~~~~~l~ 149 (151)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777777665
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.43 E-value=0.3 Score=21.27 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=11.8
Q ss_pred CCCCEEeCCCCCCccCCc
Q 041851 91 SSLEELDLQENNFERIPE 108 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~ 108 (151)
++|+.|++++|.++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356667777777766665
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.71 E-value=0.0045 Score=42.39 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=69.6
Q ss_pred hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhc
Q 041851 33 SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ 112 (151)
Q Consensus 33 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 112 (151)
.+..+...+.+|+..|+. ..+. ..|+.++.+.-++++.|.+.-.|..+++...+..+++..|..+..|..++.
T Consensus 37 ei~~~kr~tvld~~s~r~-----vn~~--~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL-----VNLG--KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhhhhHH-----Hhhc--cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 455566777888887751 1122 456667778888999888888888888888889999999988899999999
Q ss_pred cCccCEEeccCCccccc
Q 041851 113 RSKLGRLSLRYCERLQS 129 (151)
Q Consensus 113 ~~~L~~l~l~~n~~~~~ 129 (151)
.+.++.++.-+++....
T Consensus 110 ~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFFRK 126 (326)
T ss_pred cCCcchhhhccCcchHH
Confidence 99999999888875433
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.50 E-value=0.19 Score=37.36 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCcccEEEcccCCCCc---cCcccCCCCCCCEEeCCCCCCccC------CcchhccCccCEEeccCCcccccCC----CC
Q 041851 67 LHTLTYLNLTDCGITR---LPENIGQLSSLEELDLQENNFERI------PESITQRSKLGRLSLRYCERLQSLS----KL 133 (151)
Q Consensus 67 ~~~L~~l~l~~~~l~~---~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~L~~l~l~~n~~~~~~~----~~ 133 (151)
++.|+.+++..+.... +.+.-.+.+.++.+.++.+....- ...-..+..+..+.+++++.+.+-. ..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 3445555555544221 222333455555555554432211 1111223345555555555432221 23
Q ss_pred CCCcceEcccCCccc
Q 041851 134 PCKLHELDAHHCTAL 148 (151)
Q Consensus 134 ~~~l~~l~l~~~~~l 148 (151)
+++|+.+++.+|.++
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 355555666555544
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.81 E-value=0.13 Score=38.23 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCc--cCcccCCCCCCCEEeCCCCCCc---cCCcch
Q 041851 37 LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITR--LPENIGQLSSLEELDLQENNFE---RIPESI 110 (151)
Q Consensus 37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~ 110 (151)
+..|+.+..+... .+.+..- ...-.+..+|+++.+..+. +++ +...-...+.|+.+++...... .+...-
T Consensus 293 c~~lq~l~~s~~t---~~~d~~l-~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 293 CHALQVLCYSSCT---DITDEVL-WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhHhhhhcccCCC---CCchHHH-HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 5556677666332 2222111 0223356789999999886 454 3333346788899998877544 233444
Q ss_pred hccCccCEEeccCCcccccCC--------CCCCCcceEcccCCcccc
Q 041851 111 TQRSKLGRLSLRYCERLQSLS--------KLPCKLHELDAHHCTALE 149 (151)
Q Consensus 111 ~~~~~L~~l~l~~n~~~~~~~--------~~~~~l~~l~l~~~~~l~ 149 (151)
.+++.|+.+.++.|..+.+-. .....+..+++..|+.++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 567889999999887665442 223667888888887665
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.50 E-value=0.74 Score=20.02 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCCCcc
Q 041851 91 SSLEELDLQENNFER 105 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~ 105 (151)
.+|+.|+++.|.++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.83 E-value=0.26 Score=20.68 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=8.0
Q ss_pred ccccccccccccce
Q 041851 15 EALWSLHAIGTAIR 28 (151)
Q Consensus 15 ~~L~~L~l~~~~i~ 28 (151)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56667777777665
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.26 E-value=0.73 Score=35.54 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCCcccEEEcccCCCCc---cCcccCCCCCCCEEeCCCC--CCccCCcchhcc--CccCEEeccCCcccccC
Q 041851 66 GLHTLTYLNLTDCGITR---LPENIGQLSSLEELDLQEN--NFERIPESITQR--SKLGRLSLRYCERLQSL 130 (151)
Q Consensus 66 ~~~~L~~l~l~~~~l~~---~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~ 130 (151)
+.+.+..+++++|++.. +.......|++..|+|++| .+... .++... ..|+.|-+.+|+.++.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccch
Confidence 44567777788887664 3333445678888888887 33222 223222 35677888888765443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.73 E-value=2 Score=18.78 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=8.8
Q ss_pred CCCCEEeCCCCCCc
Q 041851 91 SSLEELDLQENNFE 104 (151)
Q Consensus 91 ~~L~~L~l~~n~~~ 104 (151)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777766654
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=42.08 E-value=1.1 Score=34.21 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=27.2
Q ss_pred ccEEEcccCCCCc-----cCcccCCC-CCCCEEeCCCCCCc-cC----CcchhccCccCEEeccCCc
Q 041851 70 LTYLNLTDCGITR-----LPENIGQL-SSLEELDLQENNFE-RI----PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 70 L~~l~l~~~~l~~-----~~~~~~~l-~~L~~L~l~~n~~~-~~----~~~~~~~~~L~~l~l~~n~ 125 (151)
+..+++..|.+.+ ..+.+..+ ..++++++..|.++ .- ...+..++.++.+.++.|+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 3345566665553 22233344 45566666666555 21 1123334455566666554
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.36 E-value=27 Score=32.95 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=25.6
Q ss_pred EcccCCCCccCc-ccCCCCCCCEEeCCCCCCc
Q 041851 74 NLTDCGITRLPE-NIGQLSSLEELDLQENNFE 104 (151)
Q Consensus 74 ~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~ 104 (151)
||++|.|+.++. .+..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578899998765 5667899999999999765
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.59 E-value=42 Score=31.83 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=17.5
Q ss_pred cCCCCCCcccEEEcccCCCC
Q 041851 62 LSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~l~ 81 (151)
..|..+.+|+.|+|++|.+.
T Consensus 13 g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 13 GICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred HHhccCCCceEEEeeCCccc
Confidence 56778899999999999877
Done!