Query 041851
Match_columns 151
No_of_seqs 116 out of 1288
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 6.6E-20 2.3E-24 129.6 11.1 138 3-146 115-264 (328)
2 4fcg_A Uncharacterized protein 99.8 8.7E-19 3E-23 123.8 10.4 141 3-150 138-292 (328)
3 2v9t_B SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 108.9 13.1 135 3-146 22-163 (220)
4 3e6j_A Variable lymphocyte rec 99.7 9E-17 3.1E-21 108.2 13.6 135 3-146 30-170 (229)
5 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 107.6 10.9 134 3-146 55-192 (197)
6 3m19_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 107.6 13.6 130 10-146 54-190 (251)
7 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.8E-21 105.4 13.1 136 3-146 22-164 (220)
8 1ogq_A PGIP-2, polygalacturona 99.7 3.9E-17 1.3E-21 114.6 9.3 112 7-124 68-184 (313)
9 3rgz_A Protein brassinosteroid 99.7 1.3E-16 4.4E-21 123.8 12.2 139 6-146 505-715 (768)
10 4g8a_A TOLL-like receptor 4; l 99.7 2.3E-16 7.7E-21 119.2 12.6 136 3-146 42-184 (635)
11 4eco_A Uncharacterized protein 99.7 1.2E-17 4.2E-22 127.1 5.6 137 3-145 194-363 (636)
12 2o6q_A Variable lymphocyte rec 99.7 6.8E-16 2.3E-20 106.1 13.5 46 4-49 49-96 (270)
13 1ogq_A PGIP-2, polygalacturona 99.7 1.7E-16 5.7E-21 111.4 10.2 141 6-148 140-304 (313)
14 1p9a_G Platelet glycoprotein I 99.7 4.7E-16 1.6E-20 108.1 12.1 123 15-144 77-204 (290)
15 3rfs_A Internalin B, repeat mo 99.7 1E-15 3.4E-20 105.4 13.6 130 10-146 80-216 (272)
16 1ozn_A Reticulon 4 receptor; N 99.7 5.5E-16 1.9E-20 107.2 12.2 39 10-48 51-90 (285)
17 2wfh_A SLIT homolog 2 protein 99.7 6.2E-16 2.1E-20 101.6 11.6 116 3-126 21-138 (193)
18 3rgz_A Protein brassinosteroid 99.7 2.9E-16 1E-20 121.8 11.4 135 6-146 409-549 (768)
19 2o6q_A Variable lymphocyte rec 99.7 1.6E-15 5.5E-20 104.3 13.8 137 3-146 72-216 (270)
20 2z80_A TOLL-like receptor 2, v 99.7 3.1E-16 1.1E-20 111.5 10.3 135 3-145 42-184 (353)
21 1w8a_A SLIT protein; signaling 99.7 6.2E-16 2.1E-20 101.5 11.0 116 3-126 19-138 (192)
22 3m19_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 103.3 13.3 135 3-146 25-166 (251)
23 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-15 5.3E-20 105.0 13.2 112 8-125 73-188 (285)
24 2o6s_A Variable lymphocyte rec 99.7 2.5E-15 8.7E-20 99.5 13.5 135 3-146 18-159 (208)
25 2z66_A Variable lymphocyte rec 99.7 3E-16 1E-20 109.6 9.1 130 11-146 122-259 (306)
26 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-15 3.8E-20 115.4 12.8 135 3-145 22-163 (606)
27 3e6j_A Variable lymphocyte rec 99.7 9.3E-16 3.2E-20 103.2 11.1 118 3-126 51-171 (229)
28 2z66_A Variable lymphocyte rec 99.7 1.7E-15 5.7E-20 105.8 12.5 137 3-146 89-234 (306)
29 2z62_A TOLL-like receptor 4, v 99.7 1.8E-15 6E-20 104.3 12.5 134 4-145 19-159 (276)
30 2v70_A SLIT-2, SLIT homolog 2 99.7 8.6E-16 2.9E-20 102.8 10.1 118 3-126 43-165 (220)
31 3rfs_A Internalin B, repeat mo 99.7 3.4E-15 1.1E-19 102.8 13.3 134 4-146 53-192 (272)
32 4ezg_A Putative uncharacterize 99.7 7.5E-16 2.5E-20 101.4 9.5 126 12-146 41-170 (197)
33 2xwt_C Thyrotropin receptor; s 99.6 2.5E-16 8.4E-21 106.5 6.8 38 10-47 50-89 (239)
34 2ell_A Acidic leucine-rich nuc 99.6 2E-16 6.9E-21 101.5 5.9 127 12-147 21-159 (168)
35 4ecn_A Leucine-rich repeat pro 99.6 9.3E-17 3.2E-21 125.7 5.2 115 4-124 437-583 (876)
36 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.6E-20 98.2 9.2 119 6-132 40-164 (168)
37 2z62_A TOLL-like receptor 4, v 99.6 2.5E-15 8.5E-20 103.5 11.7 117 3-125 39-160 (276)
38 3o6n_A APL1; leucine-rich repe 99.6 1.5E-15 5.2E-20 109.3 11.0 116 4-125 57-176 (390)
39 2v9t_B SLIT homolog 2 protein 99.6 2.4E-15 8.3E-20 100.6 10.9 118 3-126 43-164 (220)
40 2xwt_C Thyrotropin receptor; s 99.6 9.4E-16 3.2E-20 103.6 8.7 113 4-124 68-189 (239)
41 2xot_A Amphoterin-induced prot 99.6 4E-15 1.4E-19 106.3 12.4 135 3-146 29-174 (361)
42 3zyi_A Leucine-rich repeat-con 99.6 3.5E-15 1.2E-19 109.3 12.4 121 3-131 65-188 (452)
43 4b8c_D Glucose-repressible alc 99.6 4E-16 1.4E-20 120.4 7.4 119 3-128 212-330 (727)
44 2z81_A CD282 antigen, TOLL-lik 99.6 1.4E-15 4.8E-20 113.6 9.9 136 3-146 16-159 (549)
45 2o6s_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 97.3 12.2 121 3-129 39-163 (208)
46 2z7x_B TOLL-like receptor 1, v 99.6 2.2E-15 7.5E-20 112.0 10.5 135 2-146 10-149 (520)
47 1h6u_A Internalin H; cell adhe 99.6 7E-15 2.4E-19 103.0 12.2 109 4-124 53-161 (308)
48 3oja_B Anopheles plasmodium-re 99.6 3.3E-15 1.1E-19 113.0 11.0 116 4-125 63-182 (597)
49 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-15 1.1E-19 96.6 9.5 127 10-146 14-151 (176)
50 3vq2_A TLR4, TOLL-like recepto 99.6 1.7E-15 5.7E-20 114.4 9.3 130 10-146 419-556 (606)
51 3t6q_A CD180 antigen; protein- 99.6 8.5E-15 2.9E-19 110.6 12.9 135 3-145 23-163 (606)
52 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.7E-20 94.8 8.1 122 13-143 15-148 (149)
53 1h6t_A Internalin B; cell adhe 99.6 4.1E-15 1.4E-19 103.4 10.2 109 4-124 58-166 (291)
54 1h6u_A Internalin H; cell adhe 99.6 7.8E-15 2.7E-19 102.7 11.7 130 3-145 74-205 (308)
55 1p9a_G Platelet glycoprotein I 99.6 6.5E-15 2.2E-19 102.4 11.2 119 2-126 87-207 (290)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.8E-15 2.3E-19 110.5 12.0 134 3-146 42-180 (562)
57 1xeu_A Internalin C; cellular 99.6 1E-14 3.5E-19 100.1 11.8 130 3-146 52-183 (263)
58 4eco_A Uncharacterized protein 99.6 4.8E-15 1.6E-19 112.9 10.9 130 13-146 431-598 (636)
59 4ecn_A Leucine-rich repeat pro 99.6 7.4E-15 2.5E-19 115.1 12.2 126 13-146 695-838 (876)
60 2z7x_B TOLL-like receptor 1, v 99.6 1.3E-14 4.4E-19 107.8 12.9 132 7-146 340-479 (520)
61 3o6n_A APL1; leucine-rich repe 99.6 8.3E-15 2.8E-19 105.4 11.2 125 14-146 225-350 (390)
62 3zyj_A Leucine-rich repeat-con 99.6 1.2E-14 4.2E-19 106.1 12.2 113 4-124 55-170 (440)
63 2id5_A Lingo-1, leucine rich r 99.6 5.4E-15 1.8E-19 108.9 10.3 115 4-124 44-162 (477)
64 2je0_A Acidic leucine-rich nuc 99.6 7.5E-16 2.6E-20 97.0 4.9 110 6-122 33-148 (149)
65 4g8a_A TOLL-like receptor 4; l 99.6 3.7E-15 1.2E-19 112.6 9.1 119 2-126 62-185 (635)
66 1h6t_A Internalin B; cell adhe 99.6 2.4E-14 8.1E-19 99.6 12.4 131 3-146 79-211 (291)
67 2xot_A Amphoterin-induced prot 99.6 5E-15 1.7E-19 105.8 9.2 137 3-146 50-200 (361)
68 3zyj_A Leucine-rich repeat-con 99.6 2.7E-14 9.2E-19 104.4 13.2 136 3-145 75-217 (440)
69 2z63_A TOLL-like receptor 4, v 99.6 1.7E-14 5.9E-19 108.0 12.5 135 3-145 18-159 (570)
70 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.7E-19 99.9 10.4 130 3-146 30-161 (263)
71 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 93.1 10.9 117 3-127 18-137 (177)
72 2z80_A TOLL-like receptor 2, v 99.6 2.5E-15 8.5E-20 106.9 7.3 137 3-145 63-208 (353)
73 3zyi_A Leucine-rich repeat-con 99.6 3E-14 1E-18 104.4 13.1 61 63-124 191-252 (452)
74 1wwl_A Monocyte differentiatio 99.6 7.6E-15 2.6E-19 102.9 9.4 135 6-146 110-264 (312)
75 2id5_A Lingo-1, leucine rich r 99.6 2.4E-14 8.1E-19 105.5 12.3 136 3-146 22-163 (477)
76 1xku_A Decorin; proteoglycan, 99.6 1.9E-14 6.6E-19 101.4 11.2 120 4-125 133-274 (330)
77 1ziw_A TOLL-like receptor 3; i 99.6 1.7E-14 5.7E-19 110.3 11.5 113 4-124 16-131 (680)
78 3v47_A TOLL-like receptor 5B a 99.6 4.4E-14 1.5E-18 103.3 13.3 125 15-146 275-406 (455)
79 3oja_B Anopheles plasmodium-re 99.6 1.7E-14 5.9E-19 109.1 11.2 124 15-146 232-356 (597)
80 1dce_A Protein (RAB geranylger 99.6 1.8E-14 6.2E-19 108.4 11.1 116 16-141 442-566 (567)
81 2z63_A TOLL-like receptor 4, v 99.6 1E-14 3.4E-19 109.3 9.6 133 7-146 388-529 (570)
82 1m9s_A Internalin B; cell inva 99.6 2E-14 6.9E-19 108.9 10.8 110 3-124 54-163 (605)
83 4fmz_A Internalin; leucine ric 99.6 2.7E-14 9.2E-19 101.1 10.8 125 11-146 217-344 (347)
84 1w8a_A SLIT protein; signaling 99.6 2.7E-14 9.4E-19 93.6 10.1 123 17-146 10-137 (192)
85 3t6q_A CD180 antigen; protein- 99.6 4.1E-14 1.4E-18 106.8 12.4 118 3-125 289-411 (606)
86 2ft3_A Biglycan; proteoglycan, 99.6 6.4E-14 2.2E-18 98.8 12.5 114 3-126 44-159 (332)
87 1m9s_A Internalin B; cell inva 99.6 7.1E-14 2.4E-18 105.9 13.0 131 3-146 76-208 (605)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.4E-14 3.2E-18 104.3 13.4 132 7-146 369-508 (562)
89 1xku_A Decorin; proteoglycan, 99.5 1.1E-13 3.7E-18 97.5 12.8 124 11-144 72-201 (330)
90 3v47_A TOLL-like receptor 5B a 99.5 4.2E-14 1.5E-18 103.4 10.8 119 7-131 291-412 (455)
91 1ziw_A TOLL-like receptor 3; i 99.5 5.2E-14 1.8E-18 107.6 11.8 136 3-145 36-181 (680)
92 1a9n_A U2A', U2A'; complex (nu 99.5 5.4E-15 1.8E-19 95.6 5.4 115 3-125 30-151 (176)
93 1wwl_A Monocyte differentiatio 99.5 7.6E-15 2.6E-19 102.9 6.2 106 13-125 93-212 (312)
94 3o53_A Protein LRIM1, AGAP0063 99.5 1.9E-14 6.5E-19 101.1 8.2 126 13-146 118-248 (317)
95 3j0a_A TOLL-like receptor 5; m 99.5 4.3E-14 1.5E-18 110.7 11.0 134 3-145 15-158 (844)
96 3bz5_A Internalin-J, INLJ; leu 99.5 1.4E-13 4.8E-18 101.2 12.9 119 11-144 60-179 (457)
97 4glp_A Monocyte differentiatio 99.5 5.9E-15 2E-19 103.3 5.3 37 13-49 143-180 (310)
98 2z81_A CD282 antigen, TOLL-lik 99.5 1.3E-14 4.3E-19 108.4 7.0 124 3-132 37-166 (549)
99 2ft3_A Biglycan; proteoglycan, 99.5 7.4E-14 2.5E-18 98.5 10.4 140 3-146 134-305 (332)
100 4fmz_A Internalin; leucine ric 99.5 2.3E-13 7.7E-18 96.4 12.4 110 4-124 56-165 (347)
101 3oja_A Leucine-rich immune mol 99.5 3.9E-14 1.3E-18 104.9 8.5 127 13-147 118-249 (487)
102 4glp_A Monocyte differentiatio 99.5 5.8E-14 2E-18 98.3 8.6 135 6-146 106-262 (310)
103 3o53_A Protein LRIM1, AGAP0063 99.5 3.9E-15 1.3E-19 104.6 2.1 117 3-127 131-250 (317)
104 3j0a_A TOLL-like receptor 5; m 99.5 1.4E-13 4.8E-18 107.8 10.7 112 8-125 41-159 (844)
105 3bz5_A Internalin-J, INLJ; leu 99.5 3.7E-13 1.3E-17 99.0 12.1 126 9-149 36-162 (457)
106 1jl5_A Outer protein YOPM; leu 99.5 4.2E-13 1.4E-17 98.6 12.2 125 4-145 143-267 (454)
107 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 88.1 9.4 100 18-125 15-116 (174)
108 4b8c_D Glucose-repressible alc 99.5 8.4E-14 2.9E-18 107.5 8.6 114 25-146 211-327 (727)
109 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.3E-21 104.7 -5.7 131 3-142 36-181 (198)
110 1dce_A Protein (RAB geranylger 99.5 1.5E-13 5.2E-18 103.4 9.6 111 2-121 451-567 (567)
111 2wfh_A SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 88.0 10.5 120 17-146 12-137 (193)
112 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1E-17 87.0 9.3 101 17-125 11-113 (170)
113 3cvr_A Invasion plasmid antige 99.5 7.6E-13 2.6E-17 99.6 12.5 121 3-145 70-190 (571)
114 2ast_B S-phase kinase-associat 99.5 6.6E-15 2.3E-19 103.8 1.2 81 66-146 166-258 (336)
115 3cvr_A Invasion plasmid antige 99.5 5.9E-13 2E-17 100.2 11.4 100 3-124 91-190 (571)
116 2o6r_A Variable lymphocyte rec 99.5 1.5E-12 5.1E-17 84.1 11.9 122 16-146 8-135 (177)
117 1o6v_A Internalin A; bacterial 99.5 6.6E-13 2.2E-17 97.7 11.3 104 10-124 238-341 (466)
118 1o6v_A Internalin A; bacterial 99.4 2E-12 6.7E-17 95.1 12.7 80 64-145 261-341 (466)
119 3oja_A Leucine-rich immune mol 99.4 4.3E-13 1.5E-17 99.3 9.0 117 3-127 131-250 (487)
120 1jl5_A Outer protein YOPM; leu 99.4 2.1E-12 7.2E-17 94.9 12.1 77 64-145 149-225 (454)
121 2ast_B S-phase kinase-associat 99.4 2.6E-14 8.9E-19 100.7 1.6 56 69-124 196-257 (336)
122 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 84.8 9.0 98 3-108 23-122 (174)
123 3g39_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 83.0 9.0 96 3-106 20-117 (170)
124 3g06_A SSPH2 (leucine-rich rep 99.4 5.2E-12 1.8E-16 96.0 12.2 87 3-107 51-137 (622)
125 4ay9_X Follicle-stimulating ho 99.4 1.9E-12 6.4E-17 92.1 9.1 88 63-151 148-239 (350)
126 4ay9_X Follicle-stimulating ho 99.4 2.9E-12 9.8E-17 91.1 9.1 119 3-128 20-142 (350)
127 3g06_A SSPH2 (leucine-rich rep 99.3 1.5E-11 5.2E-16 93.5 12.3 41 3-49 72-112 (622)
128 2ifg_A High affinity nerve gro 99.3 8.2E-12 2.8E-16 88.5 8.4 95 3-104 20-116 (347)
129 2ca6_A RAN GTPase-activating p 99.3 1.7E-13 5.9E-18 98.5 -0.3 37 12-48 91-132 (386)
130 2ifg_A High affinity nerve gro 99.3 1.4E-11 4.8E-16 87.3 9.1 102 18-126 11-115 (347)
131 2ca6_A RAN GTPase-activating p 99.3 1.8E-13 6.3E-18 98.3 -0.8 137 7-146 114-285 (386)
132 1ds9_A Outer arm dynein; leuci 99.3 5.8E-14 2E-18 92.3 -4.6 126 11-146 14-151 (198)
133 3goz_A Leucine-rich repeat-con 99.2 1.3E-12 4.3E-17 93.3 0.7 36 14-49 21-62 (362)
134 3goz_A Leucine-rich repeat-con 99.2 6.9E-12 2.4E-16 89.5 2.6 41 9-49 44-91 (362)
135 1z7x_W Ribonuclease inhibitor; 99.1 4.3E-12 1.5E-16 92.8 -1.1 37 13-49 254-295 (461)
136 1z7x_W Ribonuclease inhibitor; 99.1 8.6E-12 2.9E-16 91.2 -1.2 116 7-124 219-351 (461)
137 3sb4_A Hypothetical leucine ri 98.8 2.4E-08 8.1E-13 70.3 9.4 73 67-142 225-304 (329)
138 3un9_A NLR family member X1; l 98.8 3.6E-10 1.2E-14 81.1 -0.3 128 15-146 101-250 (372)
139 3ogk_B Coronatine-insensitive 98.8 1.5E-09 5.2E-14 81.6 2.9 128 13-143 218-350 (592)
140 3ogk_B Coronatine-insensitive 98.8 5.4E-10 1.8E-14 84.1 -0.4 19 107-125 286-304 (592)
141 3un9_A NLR family member X1; l 98.7 2.7E-09 9.3E-14 76.5 0.1 112 13-126 124-251 (372)
142 3sb4_A Hypothetical leucine ri 98.6 9.8E-08 3.3E-12 67.1 7.7 86 37-131 225-313 (329)
143 1io0_A Tropomodulin; LRR prote 98.6 6.4E-09 2.2E-13 67.6 1.2 112 10-125 31-162 (185)
144 2p1m_B Transport inhibitor res 98.6 1.3E-08 4.4E-13 76.6 2.8 36 13-48 103-140 (594)
145 2p1m_B Transport inhibitor res 98.6 3.3E-09 1.1E-13 79.8 -1.0 109 11-125 62-195 (594)
146 3e4g_A ATP synthase subunit S, 98.5 8E-08 2.7E-12 61.8 4.1 81 69-149 62-153 (176)
147 3rw6_A Nuclear RNA export fact 98.4 1.3E-07 4.5E-12 64.8 3.8 63 67-130 169-236 (267)
148 3rw6_A Nuclear RNA export fact 98.3 9.2E-07 3.1E-11 60.6 5.9 96 20-120 148-257 (267)
149 1io0_A Tropomodulin; LRR prote 98.3 1.5E-07 5.2E-12 61.0 0.9 113 32-146 30-162 (185)
150 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 59.1 2.2 85 39-129 62-154 (176)
151 2ra8_A Uncharacterized protein 98.3 2.6E-07 8.7E-12 66.1 1.9 56 89-145 250-317 (362)
152 4fdw_A Leucine rich hypothetic 98.3 7.8E-06 2.7E-10 59.2 9.6 37 10-46 175-211 (401)
153 4fdw_A Leucine rich hypothetic 98.2 2E-05 7E-10 57.0 10.3 99 15-123 135-235 (401)
154 2ra8_A Uncharacterized protein 98.1 3E-06 1E-10 60.6 4.0 110 14-125 192-318 (362)
155 4gt6_A Cell surface protein; l 97.6 0.0008 2.7E-08 48.3 9.7 106 11-125 261-368 (394)
156 3rfe_A Platelet glycoprotein I 97.4 0.0006 2E-08 41.5 6.5 36 69-104 32-68 (130)
157 4h09_A Hypothetical leucine ri 97.2 0.0027 9.1E-08 45.2 8.7 61 62-123 280-342 (379)
158 4h09_A Hypothetical leucine ri 97.2 0.0033 1.1E-07 44.7 9.2 108 13-131 215-325 (379)
159 4fs7_A Uncharacterized protein 97.1 0.0047 1.6E-07 44.3 9.5 60 63-124 292-353 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00021 7.3E-09 46.7 1.2 14 68-81 98-111 (197)
161 4fs7_A Uncharacterized protein 96.6 0.0038 1.3E-07 44.8 5.6 102 11-124 272-376 (394)
162 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0011 3.7E-08 43.3 1.0 103 36-144 39-166 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0042 1.4E-07 37.7 3.4 55 19-81 12-68 (130)
164 4gt6_A Cell surface protein; l 96.2 0.013 4.4E-07 42.0 6.2 103 11-124 284-388 (394)
165 2lz0_A Uncharacterized protein 53.5 23 0.00079 19.9 3.9 38 62-100 14-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.6e-20 Score=129.58 Aligned_cols=138 Identities=29% Similarity=0.463 Sum_probs=74.8
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC---------CCCCcccEE
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL---------DGLHTLTYL 73 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~---------~~~~~L~~l 73 (151)
++..+|..++.+++|++|++++|.++.+|..+..+++|+.+++++|... +..| ..+ ..+++|+.|
T Consensus 115 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~----~~~p--~~~~~~~~~~~~~~l~~L~~L 188 (328)
T 4fcg_A 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL----TELP--EPLASTDASGEHQGLVNLQSL 188 (328)
T ss_dssp CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC----CCCC--SCSEEEC-CCCEEESTTCCEE
T ss_pred CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc----cccC--hhHhhccchhhhccCCCCCEE
Confidence 4556666677777777777777777766766777777777777765421 2222 222 124455555
Q ss_pred EcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 74 NLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 74 ~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
++++|.++.+|..++.+++|++|++++|.++.+|..+..+++|+.|++++|...+.+|.. +++|+.|++++|.
T Consensus 189 ~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp EEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred ECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 555555555554455555555555555555544444555555555555554444444432 2344444444443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=8.7e-19 Score=123.84 Aligned_cols=141 Identities=29% Similarity=0.427 Sum_probs=108.7
Q ss_pred cCCCCChhccCcccccccccccccce-ecChhhhc---------CCCCCeeeccccccCCccccccccccCCCCCCcccE
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIR-EVPSSFFR---------LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTY 72 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 72 (151)
++..+|..+..+++|++|++++|.+. .+|..+.. +++|+.+++++|. +. .+| ..++.+++|+.
T Consensus 138 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~----l~-~lp--~~l~~l~~L~~ 210 (328)
T 4fcg_A 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG----IR-SLP--ASIANLQNLKS 210 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC----CC-CCC--GGGGGCTTCCE
T ss_pred ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC----cC-cch--HhhcCCCCCCE
Confidence 56678888888889999999886654 66665443 8888888888776 33 455 56777888888
Q ss_pred EEcccCCCCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCccc
Q 041851 73 LNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTAL 148 (151)
Q Consensus 73 l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~l 148 (151)
|++++|.+++++..++.+++|++|++++|.+. .+|..+..+++|+.|++++|...+.+|.. +++|++|++++|..+
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 88888888887777888888888888887766 77777888888888888888777777753 377888888887765
Q ss_pred cc
Q 041851 149 ES 150 (151)
Q Consensus 149 ~~ 150 (151)
+.
T Consensus 291 ~~ 292 (328)
T 4fcg_A 291 SR 292 (328)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=4.9e-17 Score=108.88 Aligned_cols=135 Identities=23% Similarity=0.330 Sum_probs=111.6
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. ++++.|++++|.++.+++ .+..+++|+.|++++|. +....| ..|..+++|+.|++++|.++
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~--~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAP--DAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC----CCEECT--TTTTTCSSCCEEECCSSCCC
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----CCCcCH--HHhhCCcCCCEEECCCCcCC
Confidence 5778887654 689999999999997765 78889999999999887 555556 78889999999999999999
Q ss_pred ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
+++.. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..++. .+++|+.|++++++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 97764 57899999999999999955 5578889999999999985 455553 24778999998764
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=9e-17 Score=108.19 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=111.8
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+ +..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~--~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----LGALPV--GVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----CCCcCh--hhcccCCCcCEEECCCCcCC
Confidence 5777887654 8899999999999966 5678899999999999887 433333 56788999999999999999
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
+++. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|. +..++. .+++|+.|++.+++
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 9665 4678999999999999999999999999999999999985 556653 24788999998654
No 5
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.8e-17 Score=107.59 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=88.9
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+| .+..+++|++|++++|.++.++ .+..+++|+++++++|. +.+..+ ..+..+++|+.|++++|.+++
T Consensus 55 ~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~----l~~~~~--~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 55 NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD----VTSDKI--PNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT----CBGGGS--CCCTTCTTCCEEECCSSBCBG
T ss_pred CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc----cCcccC--hhhcCCCCCCEEEecCCccCc
Confidence 445556 5666777777777777655443 46667777777777665 444444 566677777778887777776
Q ss_pred -cCcccCCCCCCCEEeCCCCC-CccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 83 -LPENIGQLSSLEELDLQENN-FERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 83 -~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
.+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|. +..++. .+++|++|+++++.
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 55667777778888887776 66665 56677777888877774 444442 23667777776654
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=2.1e-16 Score=107.62 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=84.5
Q ss_pred hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851 10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI 87 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~ 87 (151)
.+..+++|++|++++|.++.+++ .+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+++++. .+
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 127 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ----LASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGVF 127 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc----ccccCh--hHhcccCCCCEEEcCCCcCCCcChhHh
Confidence 45666677777777776664433 45666777777777665 333333 456677777777777777777554 35
Q ss_pred CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
..+++|+.|++++|.++.++. .+..+++|+.|++++|. +..++. .+++|+.|++++++
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 667778888887777776655 56677778888887774 344442 23667777777654
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.6e-16 Score=105.38 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=107.5
Q ss_pred cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
+++.+|..+. ..+++|++++|.++.+++ .+..+++|+.+++++|. +....+ ..+..+++|+.|++++|.+
T Consensus 22 ~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~--~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----ITDIEE--GAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCC
T ss_pred CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----CCEECH--HHhCCCCCCCEEECCCCcc
Confidence 5677887653 457899999999997632 47889999999999886 444444 5788899999999999999
Q ss_pred CccCc-ccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 81 TRLPE-NIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
++++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|......|.. +++|+.|++++++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 98554 588899999999999999955 667888999999999998643333433 3778899988764
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=3.9e-17 Score=114.64 Aligned_cols=112 Identities=23% Similarity=0.366 Sum_probs=51.0
Q ss_pred CChhccCccccccccccc-ccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851 7 LPDELGNLEALWSLHAIG-TAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L 83 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~-~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~ 83 (151)
+|..+..+++|++|++++ |.+. .+|..+..+++|+++++++|. +.+..| ..+..+++|+++++++|.+++ +
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----VSGAIP--DFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC----CEEECC--GGGGGCTTCCEEECCSSEEESCC
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe----eCCcCC--HHHhCCCCCCEEeCCCCccCCcC
Confidence 445555555555555552 4444 444445555555555555443 222333 334444444444444444442 3
Q ss_pred CcccCCCCCCCEEeCCCCCCc-cCCcchhccC-ccCEEeccCC
Q 041851 84 PENIGQLSSLEELDLQENNFE-RIPESITQRS-KLGRLSLRYC 124 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~-~L~~l~l~~n 124 (151)
|..+..+++|++|++++|.++ .+|..+..++ .|+.|++++|
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 444444444444444444444 3444444443 4444444444
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=1.3e-16 Score=123.76 Aligned_cols=139 Identities=18% Similarity=0.276 Sum_probs=107.8
Q ss_pred CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccc-----------------------------
Q 041851 6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMS----------------------------- 55 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~----------------------------- 55 (151)
.+|..++.+++|++|++++|.+. .+|..+..+++|+.++++.|.....++
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 56777777788888888888877 667777788888888887775321111
Q ss_pred -------------------------------------cccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCCCEEe
Q 041851 56 -------------------------------------LSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSLEELD 97 (151)
Q Consensus 56 -------------------------------------~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~ 97 (151)
+..| ..++.+++++.+++++|.+++ +|..++.++.|+.|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~--~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC--CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCc--hhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 0112 345566788999999999987 888999999999999
Q ss_pred CCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 98 LQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 98 l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
+++|.++ .+|..++.+++|+.|++++|...+.+|.. +++|++|++++|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999998 88999999999999999999877788864 3678888998775
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=2.3e-16 Score=119.17 Aligned_cols=136 Identities=24% Similarity=0.273 Sum_probs=110.6
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++.++|..+ .+++++|++++|.++.+++ +|..+++|++|++++|. +....+ ..|..+++|++|++++|.++
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~--~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred CcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcCh--hHhcCCCCCCEEEccCCcCC
Confidence 577888765 2579999999999998864 78999999999999886 444445 67889999999999999999
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCCc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~~ 146 (151)
+++. .+..+++|++|++++|.++.++. .++++++|+.|++++|.... .+|.. +++|++|+++++.
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9764 57899999999999999997765 58899999999999986322 33433 4788999988764
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.2e-17 Score=127.10 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=105.7
Q ss_pred cCCCCChhccCccccccccccccccee------------------cChhhh--cCCCCCeeeccccccCCcccccccccc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIRE------------------VPSSFF--RLNNIDLLSFQRSRGHKQMSLSLPITL 62 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~ 62 (151)
++..+|..++++++|++|++++|.++. +|..+. .+++|++++++.|. +.+..| +
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p--~ 267 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLP--T 267 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCC--T
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccCh--H
Confidence 566688889999999999999999886 888877 89999999999776 555667 7
Q ss_pred CCCCCCcccEEEcccCC-CCc--cCcccCCC------CCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCC
Q 041851 63 SLDGLHTLTYLNLTDCG-ITR--LPENIGQL------SSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 63 ~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l------~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
.++.+++|+.|++++|. +++ +|..++.+ ++|++|++++|.++.+|. .++.+++|+.|++++|...+.+|
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 78888888888888887 775 67666665 788888888888887777 77777888888888776444666
Q ss_pred CC--CCCcceEcccCC
Q 041851 132 KL--PCKLHELDAHHC 145 (151)
Q Consensus 132 ~~--~~~l~~l~l~~~ 145 (151)
.+ +++|+.|++++|
T Consensus 348 ~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 348 AFGSEIKLASLNLAYN 363 (636)
T ss_dssp CCEEEEEESEEECCSS
T ss_pred hhCCCCCCCEEECCCC
Confidence 22 255666666654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=6.8e-16 Score=106.13 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCCCh-hccCcccccccccccccceecChh-hhcCCCCCeeeccccc
Q 041851 4 LQRLPD-ELGNLEALWSLHAIGTAIREVPSS-FFRLNNIDLLSFQRSR 49 (151)
Q Consensus 4 l~~lp~-~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~l~l~~n~ 49 (151)
+..+|. .+..+++|++|++++|.++.++.. +..+++|+.+++++|.
T Consensus 49 l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 49 LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 334442 455556666666666666555432 3455566666665554
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.7e-16 Score=111.44 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=100.6
Q ss_pred CCChhccCcccccccccccccce-ecChhhhcCC-CCCeeeccccccCCc-------------------cccccccccCC
Q 041851 6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLN-NIDLLSFQRSRGHKQ-------------------MSLSLPITLSL 64 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~l~l~~n~~~~~-------------------~~~~~~~~~~~ 64 (151)
.+|..+..+++|++|++++|.++ .+|..+..+. +|+.++++.|..... +.+..+ ..+
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~--~~~ 217 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS--VLF 217 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG--GGC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCC--HHH
Confidence 46667777777777777777776 6666676666 677777776642210 122334 566
Q ss_pred CCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC--CCCcceEc
Q 041851 65 DGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELD 141 (151)
Q Consensus 65 ~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~ 141 (151)
..+++|+.+++++|.+++.++.+..+++|++|++++|.++ .+|..+..+++|+.|++++|...+.+|.. +++|+.++
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 7778888888888887764445777888888888888888 78888888888888888888766677754 46677778
Q ss_pred ccCCccc
Q 041851 142 AHHCTAL 148 (151)
Q Consensus 142 l~~~~~l 148 (151)
+.+++.+
T Consensus 298 l~~N~~l 304 (313)
T 1ogq_A 298 YANNKCL 304 (313)
T ss_dssp TCSSSEE
T ss_pred hcCCCCc
Confidence 8777654
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=4.7e-16 Score=108.13 Aligned_cols=123 Identities=23% Similarity=0.223 Sum_probs=56.0
Q ss_pred ccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCC
Q 041851 15 EALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSL 93 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L 93 (151)
++|++|++++|.++.+|..+..+++|+.++++.|+ +....+ ..|..+++|+.|++++|.+++++. .+..+++|
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~----l~~l~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR----LTSLPL--GALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC----CCCCCS--STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc----CcccCH--HHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 33333344444333333333344444444444443 222222 334455555555555555555332 23445555
Q ss_pred CEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCCCC---CCcceEcccC
Q 041851 94 EELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHH 144 (151)
Q Consensus 94 ~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~ 144 (151)
+.|++++|.++.+|.. +..+++|+.|++++|. +..+|... .+++.+++.+
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCC
Confidence 5555555555544442 3445555555555553 33444321 3455555553
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1e-15 Score=105.42 Aligned_cols=130 Identities=27% Similarity=0.374 Sum_probs=78.9
Q ss_pred hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851 10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI 87 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~ 87 (151)
.+..+++|++|++++|.++.+++ .+..+++|+.+++++|. +....+ ..+..+++|+.|++++|.+++++. .+
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ----LQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc----CCccCH--HHhccCCCCCEEECCCCccCccCHHHh
Confidence 45556666666666666664443 34556666666666554 332233 445667777777777777776443 34
Q ss_pred CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
..+++|+.|++++|.++.++. .+..+++|+.|++++|.. ..++. .+++|+.|++.+++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-CccCHHHHhCCcCCCEEEccCCC
Confidence 667777777777777775544 346667777777777753 33332 23667777776543
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.5e-16 Score=107.23 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred hccCcccccccccccccceec-ChhhhcCCCCCeeecccc
Q 041851 10 ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRS 48 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n 48 (151)
.+..+++|++|++++|.++.+ +..+..+++|+.+++++|
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555566666665555533 334555555555555544
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.2e-16 Score=101.58 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=99.6
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..+. +++++|++++|.++.+|..+..+++|+.|++++|. +....+ ..|..+++|+.|++++|.+++
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~----i~~i~~--~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR----ISTLSN--QSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCCB
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc----CCEeCH--hHccCCCCCCEEECCCCccCE
Confidence 5778887653 68999999999999998889999999999999887 444445 678899999999999999999
Q ss_pred cC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851 83 LP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER 126 (151)
Q Consensus 83 ~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 126 (151)
++ ..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55 468899999999999999997776 577889999999999874
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=2.9e-16 Score=121.77 Aligned_cols=135 Identities=24% Similarity=0.248 Sum_probs=105.1
Q ss_pred CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851 6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L 83 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~ 83 (151)
.+|..+..+++|++|++++|.++ .+|..+..+++|+.+++..|. +.+..| ..+..+++|+.+++++|.+++ +
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM----LEGEIP--QELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC----CCSCCC--GGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc----ccCcCC--HHHcCCCCceEEEecCCcccCcC
Confidence 46677777788888888888777 567777778888888888765 445566 667778888888888888886 7
Q ss_pred CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
|..+..+++|+.|++++|.++ .+|.+++.+++|+.|++++|...+.+|.. +++|+.|++++|.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 778888888888888888888 77888888888888888888766677753 3778888888765
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.6e-15 Score=104.27 Aligned_cols=137 Identities=29% Similarity=0.435 Sum_probs=111.8
Q ss_pred cCCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|.. +..+++|++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+.|++++|.+
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ----LKSLPP--RVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc----cCeeCH--HHhCcCcCCCEEECCCCcC
Confidence 46677755 4789999999999999997765 56889999999999886 444444 6678899999999999999
Q ss_pred CccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 81 TRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
++++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|. +..+|.. +++|+.|++.+++
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 98665 47889999999999999997665 57788999999999985 5566642 4788999998654
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=111.55 Aligned_cols=135 Identities=23% Similarity=0.274 Sum_probs=103.9
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.++. .+..+++|+.+++++|. +.+..+ ..+..+++|+.|++++|.++
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEE--DSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCS
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc----cCccCH--hhcCCCCCCCEEECCCCcCC
Confidence 5677887654 589999999999887765 78889999999999776 444445 66888889999999999988
Q ss_pred ccCcc-cCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-C---CCCcceEcccCC
Q 041851 82 RLPEN-IGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHC 145 (151)
Q Consensus 82 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~ 145 (151)
+++.. +..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++. . +++|++|++++|
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 87654 7788999999999998887776 677888899999988854555542 2 356677777654
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=6.2e-16 Score=101.47 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=98.0
Q ss_pred cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
+++.+|..+.. ++++|++++|.++.++. .+..+++|+.|++++|. +.+..| ..+..+++|+.|++++|.+
T Consensus 19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ----LTGIEP--NAFEGASHIQELQLGENKI 90 (192)
T ss_dssp CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC----CCCBCT--TTTTTCTTCCEEECCSCCC
T ss_pred CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC----CCCcCH--hHcCCcccCCEEECCCCcC
Confidence 57788876643 89999999999997765 38889999999999887 555556 7888999999999999999
Q ss_pred CccC-cccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcc
Q 041851 81 TRLP-ENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 81 ~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~ 126 (151)
++++ ..+..+++|++|++++|.++ ..|..+..+++|+.+++++|+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9854 45888999999999999999 4577788899999999999874
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.6e-15 Score=103.26 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=111.6
Q ss_pred cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. ++++.|++++|.++.++ ..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSA--GVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCCC
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc----CCccCH--hHhccCCcCCEEECCCCccc
Confidence 5677887654 68999999999999664 478899999999999887 444455 66888999999999999999
Q ss_pred ccC-cccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCC-C---CCCcceEcccCCc
Q 041851 82 RLP-ENIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~~ 146 (151)
+++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|. +..++. . +++|++|+++++.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 865 4678999999999999999977764 6789999999999985 566664 2 3789999998764
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.6e-15 Score=104.97 Aligned_cols=112 Identities=29% Similarity=0.427 Sum_probs=57.4
Q ss_pred ChhccCccccccccccccc-ceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc
Q 041851 8 PDELGNLEALWSLHAIGTA-IREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE 85 (151)
Q Consensus 8 p~~~~~l~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~ 85 (151)
|..+..+++|++|++++|. ++.+ +..+..+++|+.+++.+|. +....+ ..+..+++|+.+++++|.+++++.
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG----LQELGP--GLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc----CCEECH--hHhhCCcCCCEEECCCCcccccCH
Confidence 4455666666666666665 5544 3455556666666666554 222223 344445555555555555554332
Q ss_pred -ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851 86 -NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 86 -~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~ 125 (151)
.+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 24445555555555555543333 24444555555555543
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.5e-15 Score=99.49 Aligned_cols=135 Identities=21% Similarity=0.318 Sum_probs=103.2
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
.+..+|..+ .+++++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+++++++|.++
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPN--GVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc----cCccCh--hhcCCCCCcCEEECCCCcCC
Confidence 456677554 4689999999999987765 46788999999999876 333333 45678899999999999998
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
+++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|. +..++.. +++|++|+++++.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 8654 46788999999999999886665 46788899999999985 4455532 4778888888754
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=3e-16 Score=109.56 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=74.9
Q ss_pred ccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCcccc-ccccccCCCCCCcccEEEcccCCCCcc-Cccc
Q 041851 11 LGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSL-SLPITLSLDGLHTLTYLNLTDCGITRL-PENI 87 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~ 87 (151)
+..+++|++|++++|.+... +..+..+++|+.+++++|. +.+ ..| ..+..+++|+.+++++|.++++ +..+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS----FQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE----EGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc----cccccch--hHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 44444455555555544422 2334445555555555443 222 234 5566677777777777777763 5566
Q ss_pred CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
..+++|+.|++++|.++.++. .+..+++|+.|++++|......+.. +++|+.|++++++
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 677777777777777775443 5566677777777777544433322 2467777777654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=1.1e-15 Score=115.38 Aligned_cols=135 Identities=22% Similarity=0.275 Sum_probs=85.2
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+++ .+..+++|+++++++|. +.+..| ..|..+++|++|++++|.++
T Consensus 22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~--~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 22 KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE----IETIED--KAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc----ccccCH--HHhhchhhcCEeECCCCccc
Confidence 4566666543 567777777777765543 66677777777777664 333344 55666777777777777776
Q ss_pred cc-CcccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851 82 RL-PENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 82 ~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~ 145 (151)
++ |..++.+++|++|++++|.++.++ ..++.+++|++|++++|.... .+|.. +++|++|+++++
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 63 556667777777777777766444 456666777777777764332 34432 356666666655
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=9.3e-16 Score=103.21 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=101.7
Q ss_pred cCCCC-ChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRL-PDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+
T Consensus 51 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 51 QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ----LTVLPS--AVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc----CCccCh--hHhCcchhhCeEeccCCcc
Confidence 45555 5678899999999999999998875 56889999999999887 443334 5678899999999999999
Q ss_pred CccCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851 81 TRLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER 126 (151)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 126 (151)
+.+|..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus 125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999999999999999997765 577889999999999974
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.7e-15 Score=105.75 Aligned_cols=137 Identities=21% Similarity=0.313 Sum_probs=114.8
Q ss_pred cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|..+..+++|++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.+
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFN--GIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC----CEECST--TTTTTCTTCCEEECTTCEE
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc----CCccch--hhcccCcCCCEEECCCCcc
Confidence 456678888999999999999999997653 68889999999999876 454555 6788899999999999998
Q ss_pred Cc--cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 81 TR--LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 81 ~~--~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
.+ .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++. .+++|+.|++++|.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 86 778899999999999999999955 6678889999999999986 444443 24789999999775
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.8e-15 Score=104.26 Aligned_cols=134 Identities=24% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
+.++|..+. +++++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.+++
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCCE
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc----CCccCH--HHccCCcCCCEEECCCCccCc
Confidence 444555432 356666666666665543 55666666666666554 222222 345555666666666666655
Q ss_pred cC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851 83 LP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 83 ~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~ 145 (151)
++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.... .+|.. +++|++|++++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 32 345556666666666665554433 45555566666666553221 12321 245555555544
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=8.6e-16 Score=102.82 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=100.8
Q ss_pred cCCCCC--hhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 3 HLQRLP--DELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 3 ~l~~lp--~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
++..++ ..+..+++|++|++++|.++.+++ .+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.
T Consensus 43 ~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 43 EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR----LENVQH--KMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCG--GGGTTCSSCCEEECTTSC
T ss_pred cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc----cCccCH--hHhcCCcCCCEEECCCCc
Confidence 455553 347889999999999999997765 78999999999999887 444445 668899999999999999
Q ss_pred CCcc-CcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcc
Q 041851 80 ITRL-PENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 80 l~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~ 126 (151)
++++ +..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|+.
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9985 67888999999999999999965 67888999999999999974
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3.4e-15 Score=102.81 Aligned_cols=134 Identities=22% Similarity=0.346 Sum_probs=107.4
Q ss_pred CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+..++ .+..+++|++|++++|.++.++ .+..+++|+++++++|. +....+ ..+..+++|+.|++++|.++++
T Consensus 53 i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 53 IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ----LQSLPN--GVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCCCCC
T ss_pred ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc----cCccCh--hHhcCCcCCCEEECCCCcCCcc
Confidence 44444 4678899999999999988764 67889999999999876 444444 5678899999999999999986
Q ss_pred Cc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 84 PE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 84 ~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
+. .+..+++|++|++++|.++.++. .+..+++|+.|++++|. +..++. .+++|+.|++++|.
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence 54 47889999999999999996665 46788999999999985 445553 24789999998764
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=7.5e-16 Score=101.37 Aligned_cols=126 Identities=18% Similarity=0.248 Sum_probs=107.8
Q ss_pred cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCC
Q 041851 12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQL 90 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l 90 (151)
..+++|++|++++|.++.+| .+..+++|+.+++++|. +. .+ ..+..+++|+.+++++|.+++ .+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~----~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH----AT--NY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC----CS--CC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC----CC--cc--hhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 57889999999999999887 68899999999999774 22 12 457789999999999999997 77789999
Q ss_pred CCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC--CCCcceEcccCCc
Q 041851 91 SSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHCT 146 (151)
Q Consensus 91 ~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~~ 146 (151)
++|++|++++|.++ ..+..+..+++|+.|++++|..+..++.. +++|+.|++++|.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 99999999999998 56778899999999999999767777743 4889999998764
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=2.5e-16 Score=106.47 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=18.9
Q ss_pred hccCccccccccccccc-ceecCh-hhhcCCCCCeeeccc
Q 041851 10 ELGNLEALWSLHAIGTA-IREVPS-SFFRLNNIDLLSFQR 47 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~l~l~~ 47 (151)
.+..+++|++|++++|. ++.+++ .+..+++|+.+++++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 34455555555555554 444433 344455555555554
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2e-16 Score=101.53 Aligned_cols=127 Identities=23% Similarity=0.244 Sum_probs=105.0
Q ss_pred cCcccccccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccC
Q 041851 12 GNLEALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIG 88 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~ 88 (151)
...+++++|++++|.++ .+|..+..+++|+.+++++|. +... ..+..+++|+.+++++|.+++ ++..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISV----SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----CCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----CCCh----hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 34578999999999998 788778889999999999876 3222 357788999999999999998 776677
Q ss_pred CCCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCcccccCCC-------CCCCcceEcccCCcc
Q 041851 89 QLSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCERLQSLSK-------LPCKLHELDAHHCTA 147 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~-------~~~~l~~l~l~~~~~ 147 (151)
.+++|++|++++|.++.++ ..+..+++|+.|++++|. +..++. .+++|++|++.+|..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7999999999999999776 678889999999999986 455554 348899999988863
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=9.3e-17 Score=125.68 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCCChhccCccccccccccccccee------------------cChhhh--cCCCCCeeeccccccCCccccccccccC
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIRE------------------VPSSFF--RLNNIDLLSFQRSRGHKQMSLSLPITLS 63 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~ 63 (151)
+..+|..++++++|+.|++++|.++. +|..+. .+++|+.|+++.|. +.+..| ..
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP--~~ 510 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLP--DF 510 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCC--GG
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccCh--HH
Confidence 33366666777777777777776665 666544 66677777776554 333444 44
Q ss_pred CCCCCcccEEEcccCC-CCc--cCcccCCC-------CCCCEEeCCCCCCccCCc--chhccCccCEEeccCC
Q 041851 64 LDGLHTLTYLNLTDCG-ITR--LPENIGQL-------SSLEELDLQENNFERIPE--SITQRSKLGRLSLRYC 124 (151)
Q Consensus 64 ~~~~~~L~~l~l~~~~-l~~--~~~~~~~l-------~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n 124 (151)
++.+++|+.|++++|. +++ +|..++.+ ++|+.|++++|.++.+|. .++.+++|+.|++++|
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC
Confidence 5555555555555554 443 33333222 255555555555444444 4444445555555444
No 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1e-15 Score=98.16 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=100.7
Q ss_pred CCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-
Q 041851 6 RLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP- 84 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~- 84 (151)
.+|..+..+++|++|++++|.++.+ ..+..+++|+.+++++|. +....| ..+..+++|+.+++++|.+++++
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR----IFGGLD--MLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC----CCSCCC--HHHHHCTTCCEEECBSSSCCSSGG
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc----CchHHH--HHHhhCCCCCEEeccCCccCcchh
Confidence 7888889999999999999999877 668889999999999887 444455 55666899999999999999865
Q ss_pred -cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccCCcccccCCC
Q 041851 85 -ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRYCERLQSLSK 132 (151)
Q Consensus 85 -~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~ 132 (151)
..+..+++|+.|++++|.++.++. .+..+++|+.|++++|. ..++|.
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 688899999999999999997776 67889999999999985 455553
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=2.5e-15 Score=103.49 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=85.9
Q ss_pred cCCCCCh-hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPD-ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..++. .+..+++|++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.+
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLAL--GAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTSCC
T ss_pred cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc----cCccCh--hhhcCCccccEEECCCCCc
Confidence 4555554 67788889999999988886654 67788889999998776 443444 5667777788888888777
Q ss_pred CccCc-ccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCCc
Q 041851 81 TRLPE-NIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~ 125 (151)
.+++. .+..+++|++|++++|.++. +|..+..+++|+.|++++|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 77443 56777788888888777764 56677777778888777774
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=1.5e-15 Score=109.27 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=74.9
Q ss_pred CCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 4 LQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 4 l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+..+|.. +..+++|++|++++|.++.+++ .+..+++|+.+++++|. +....+ ..++.+++|+.|++++|.++
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP--HVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC----CCcCCH--HHhcCCCCCCEEECCCCccC
Confidence 4445543 4566777777777777765543 56667777777777665 333334 55666777777777777777
Q ss_pred ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCc
Q 041851 82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~ 125 (151)
+++.. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 76554 46677777777777777644 3346666777777777764
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=2.4e-15 Score=100.63 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=100.2
Q ss_pred cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
+|..+|. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +....+ ..|..+++|+.|++++|.+
T Consensus 43 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----ITELPK--SLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc----CCccCH--hHccCCCCCCEEECCCCCC
Confidence 4566664 678899999999999999966 6789999999999999887 443333 5578899999999999999
Q ss_pred Ccc-CcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851 81 TRL-PENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER 126 (151)
Q Consensus 81 ~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 126 (151)
+++ +..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 995 5678899999999999999997665 578889999999999974
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=9.4e-16 Score=103.62 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCCCCh-hccCccccccccccc-ccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCccc---EEEccc
Q 041851 4 LQRLPD-ELGNLEALWSLHAIG-TAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLT---YLNLTD 77 (151)
Q Consensus 4 l~~lp~-~~~~l~~L~~L~l~~-~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~---~l~l~~ 77 (151)
++.+|. .+..+++|++|++++ |.++.++. .+..+++|+.+++..|.... .| . +..+++++ .+++++
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp--~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FP--D-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CC--C-CTTCCBCCSEEEEEEES
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----cc--c-cccccccccccEEECCC
Confidence 556664 567778888888887 77776653 56677788888887765211 22 2 33344444 555555
Q ss_pred C-CCCccCc-ccCCCCCCC-EEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 78 C-GITRLPE-NIGQLSSLE-ELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 78 ~-~l~~~~~-~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
| .+++++. .+..+++|+ .+++++|.++.+|......++|+.+++++|
T Consensus 140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 5 4444332 244455555 555555554444433222244555555544
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=4e-15 Score=106.28 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=90.4
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|..+. +.++.|++++|.++.++. .+. .+++|+.|++++|. +....+ ..|..+++|+.|++++|.+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~--~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISS--EAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCC
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc----CCccCh--hhccCCCCCCEEECCCCcC
Confidence 4666776543 357778888888776654 344 67778888887765 343334 5577777788888888877
Q ss_pred CccCc-ccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCCC-------CCCcceEcccCCc
Q 041851 81 TRLPE-NIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELDAHHCT 146 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~l~~~~ 146 (151)
+.++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..+|.. +++|+.|+++++.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 77443 566777788888887777744 4567777777788877774 4555531 4667777776653
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=3.5e-15 Score=109.35 Aligned_cols=121 Identities=26% Similarity=0.392 Sum_probs=78.6
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+ +..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQIEV--GAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCCS
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc----cCCcCh--hhccCcccCCEEECCCCcCC
Confidence 4556665443 5777788888877755 4567777778888887665 443444 56667777777777777777
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
.++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..++.++
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 7543 46667777777777777765544 45555666666666554444444
No 43
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=4e-16 Score=120.39 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=95.1
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++...|..+..++.|+.|++++|.+..+|..+..+++|+.|++++|. +. .+| ..++.+++|+.|++++|.++.
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~----l~-~lp--~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS----LT-ELP--AEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC----CS-CCC--GGGGGGTTCCEEECTTSCCSS
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc----Cc-ccC--hhhhCCCCCCEEeCcCCcCCc
Confidence 34445677888899999999999998888878889999999999886 44 556 677888999999999999998
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQ 128 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~ 128 (151)
+|..++.+++|++|+|++|.++.+|..++.+++|+.|++++|...+
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 8888999999999999999999888888899999999999987543
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.4e-15 Score=113.57 Aligned_cols=136 Identities=22% Similarity=0.290 Sum_probs=107.4
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+ |..+..+++|+++++++|. +.+..+ +.+..+++|+.|++++|.++
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----INTIEG--DAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC----cCccCh--hhccccccCCEEECCCCccC
Confidence 6778887654 7899999999999865 4578889999999999876 555555 67888999999999999998
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
+++. .++.+++|++|++++|.++ ..|..+..+++|+.|++++|..++.+|. .+++|++|++++|.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 8654 4889999999999999888 3466788888999999998875666653 23667777776543
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=7.3e-15 Score=97.26 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=99.6
Q ss_pred cCCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|.. +..+++|++|++++|.++.++. .+..+++|+++++++|. +....+ ..+..+++|+.+++++|.+
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 39 SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ----LQSLPN--GVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc----CCccCH--hHhcCccCCCEEEcCCCcC
Confidence 45667654 6789999999999999997765 46789999999999886 443333 5578899999999999999
Q ss_pred CccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCccccc
Q 041851 81 TRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQS 129 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~ 129 (151)
++++. .+..+++|+.|++++|.++.++. .+..+++|+.+++++|+....
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 98665 47889999999999999997766 477889999999999875433
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=111.98 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=111.1
Q ss_pred ccCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
.++..+|..+. +++++|++++|.++.++ ..+..+++|+++++++|. +.+..| +.+..+++|++|++++|.+
T Consensus 10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR----IQYLDI--SVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC----CCEEEG--GGGTTCTTCCEEECCSSCC
T ss_pred CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc----cCCcCh--HHhhcccCCCEEecCCCce
Confidence 36788898765 89999999999999776 578999999999999887 555556 7888999999999999999
Q ss_pred CccCcccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCCcccccCCCCCCCc--ceEcccCCc
Q 041851 81 TRLPENIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYCERLQSLSKLPCKL--HELDAHHCT 146 (151)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l--~~l~l~~~~ 146 (151)
+++|.. .+++|++|++++|.++. +|..++.+++|++|++++|......-..++++ +.|++++|.
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECT
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccc
Confidence 998766 89999999999999984 67889999999999999986433221233566 888887764
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=7e-15 Score=102.99 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=58.5
Q ss_pred CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+..+| .+..+++|++|++++|.++.++. +..+++|+.|++++|.... . +.+..+++|+.|++++|.++++
T Consensus 53 i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~---~~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 53 VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-----V---SAIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-----C---GGGTTCTTCCEEECTTSCCCCC
T ss_pred ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-----c---hhhcCCCCCCEEECCCCCCCCc
Confidence 44455 45666777777777777666554 6666677777776654211 1 1244455555555555555544
Q ss_pred CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+. +..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 123 ~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC
Confidence 32 4445555555555555444333 444444555555444
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3.3e-15 Score=113.02 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=80.1
Q ss_pred CCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 4 LQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 4 l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+..+|.. +..+++|++|++++|.++.+++ .+..+++|+.|++++|. +.+..+ ..++.+++|+.|++++|.++
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP--HVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc----CCCCCH--HHHcCCCCCCEEEeeCCCCC
Confidence 3445543 4567777788888777775543 67777778888877665 444444 55677777888888888777
Q ss_pred ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCc
Q 041851 82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~ 125 (151)
++|.. ++.+++|++|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 76654 46777888888888777744 3356777778888887774
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=3.3e-15 Score=96.63 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=104.1
Q ss_pred hccCcccccccccccccceecChhhhcCC-CCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCccc-
Q 041851 10 ELGNLEALWSLHAIGTAIREVPSSFFRLN-NIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENI- 87 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~- 87 (151)
.+..+.++++|++++|.++.++. +..+. +|+.+++++|. +.+. +.+..+++|+.+++++|.++++++.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~----l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE----IRKL----DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC----CCEE----CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC----CCcc----cccccCCCCCEEECCCCcccccCcchh
Confidence 35678899999999999997765 44554 99999999886 3322 35778999999999999999977554
Q ss_pred CCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCCC-------CCCcceEcccCCc
Q 041851 88 GQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELDAHHCT 146 (151)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~l~~~~ 146 (151)
..+++|++|++++|.++.+|. .+..+++|+.+++++|+ +..+|.. +++|+.|+++++.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 889999999999999998887 78889999999999996 4566652 4889999988765
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=1.7e-15 Score=114.44 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=77.7
Q ss_pred hccCccccccccccccccee-cChhhhcCCCCCeeeccccccCCcccc-ccccccCCCCCCcccEEEcccCCCCc-cCcc
Q 041851 10 ELGNLEALWSLHAIGTAIRE-VPSSFFRLNNIDLLSFQRSRGHKQMSL-SLPITLSLDGLHTLTYLNLTDCGITR-LPEN 86 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~ 86 (151)
.+..+++|++|++++|.+.. .|..+..+++|+.+++++|. +.+ ..| ..++.+++|+.+++++|.+++ .+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS----FKDNTLS--NVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE----EGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc----CCCcchH--HhhccCCCCCEEECCCCcCCccChhh
Confidence 34445555555555555542 23344455555555555443 222 134 556677777777777777776 4456
Q ss_pred cCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCCcccccCCCCC----CCcceEcccCCc
Q 041851 87 IGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYCERLQSLSKLP----CKLHELDAHHCT 146 (151)
Q Consensus 87 ~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~l~~l~l~~~~ 146 (151)
+..+++|+.|++++|.++. .|..+..+++|+.|++++|. +..+|..+ ++|+.+++++++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 6777777777777777774 35566777777777777774 44555422 357777776644
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=8.5e-15 Score=110.57 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=94.8
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +.+++|++++|.++.+ |..+..+++|+++++++|. +....| ..|..+++|+.|++++|.++
T Consensus 23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 23 GLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ----IYWIHE--DTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCS
T ss_pred CcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCc----cceeCh--hhccCccccCeeeCCCCccc
Confidence 4566776554 3678888888888755 4577778888888888765 444455 66777888888888888877
Q ss_pred c-cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccc-cCCCC--CCCcceEcccCC
Q 041851 82 R-LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQ-SLSKL--PCKLHELDAHHC 145 (151)
Q Consensus 82 ~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~-~~~~~--~~~l~~l~l~~~ 145 (151)
+ .|..++.+++|++|++++|.++.+ +..++.+++|++|++++|.... ..|.. +++|++|+++++
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 7 456777788888888888877755 4567777788888888775332 22332 367777777765
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.2e-15 Score=94.79 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=101.8
Q ss_pred Ccccccccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCC
Q 041851 13 NLEALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQ 89 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~ 89 (151)
..++++.|++++|.++ .+|..+..+++|+.+++++|. +... ..++.+++|+.+++++|.+++ +|..+..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----CCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----CCCc----hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 4578999999999998 788878899999999999886 3222 357788999999999999998 7777777
Q ss_pred CCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCcccccCCC----C---CCCcceEccc
Q 041851 90 LSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCERLQSLSK----L---PCKLHELDAH 143 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~----~---~~~l~~l~l~ 143 (151)
+++|++|++++|.++.++ ..+..+++|+.+++++|. +..++. . +++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999999764 678899999999999995 555554 1 3788888875
No 53
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.1e-15 Score=103.44 Aligned_cols=109 Identities=25% Similarity=0.368 Sum_probs=61.8
Q ss_pred CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+..++ .+..+++|++|++++|.++.+++ +..+++|+.+++++|. +.. . +.+..+++|+.|++++|.++++
T Consensus 58 i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~----l~~-~---~~l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK----VKD-L---SSLKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-G---GGGTTCTTCCEEECTTSCCCCC
T ss_pred cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc----CCC-C---hhhccCCCCCEEECCCCcCCCC
Confidence 44454 35667777777777777776554 6667777777777664 211 1 2244555566666666655554
Q ss_pred CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|
T Consensus 128 ~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 128 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp G-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred h-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC
Confidence 2 344555555555555555544 33445555555555555
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=7.8e-15 Score=102.73 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=75.2
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|. +.. .+ .+..+++|+.|++++|.+++
T Consensus 74 ~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~----l~~-~~---~l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 74 QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ----ITD-VT---PLAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC----CCC-CG---GGTTCTTCCEEECCSSCCCC
T ss_pred cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC----CCC-ch---hhcCCCCCCEEECCCCccCc
Confidence 4555665 677778888888887777654 46677777777777665 221 12 24555666666666666655
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHC 145 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~ 145 (151)
++. +..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++. .+++|++|++++|
T Consensus 144 ~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 144 ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS
T ss_pred Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCC
Confidence 443 5555666666666665554443 4555556666665553 333332 1244555555544
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=6.5e-15 Score=102.37 Aligned_cols=119 Identities=25% Similarity=0.247 Sum_probs=103.3
Q ss_pred ccCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
.++..+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~----l~~~~~--~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE----LKTLPP--GLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCC
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC----CCccCh--hhcccccCCCEEECCCCcC
Confidence 356788888899999999999999999776 468899999999999887 443334 5678899999999999999
Q ss_pred CccCcc-cCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851 81 TRLPEN-IGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 81 ~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~ 126 (151)
++++.. +..+++|+.|++++|.++.+|..+....+|+.+++++|+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 997764 5679999999999999999999888889999999999873
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.61 E-value=6.8e-15 Score=110.46 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=109.4
Q ss_pred cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++.++|..+. +++++|++++|.++.++ ..+..+++|+++++++|. +.+..| +.+..+++|++|++++|.++
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR----IRSLDF--HVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC----CCEECT--TTTTTCTTCCEEECTTSCCC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC----CCcCCH--HHhCCCCCCCEEECCCCcCC
Confidence 5778887664 89999999999999776 488999999999999886 555556 77889999999999999999
Q ss_pred ccCcccCCCCCCCEEeCCCCCCccC--CcchhccCccCEEeccCCcccccCCCCCCCc--ceEcccCCc
Q 041851 82 RLPENIGQLSSLEELDLQENNFERI--PESITQRSKLGRLSLRYCERLQSLSKLPCKL--HELDAHHCT 146 (151)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l--~~l~l~~~~ 146 (151)
++|.. .+++|++|++++|.++.+ |..++.+++|++|++++|.....--..+.++ +.|+++++.
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc
Confidence 98866 899999999999999865 4689999999999999986432211223455 888887764
No 57
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1e-14 Score=100.09 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=83.2
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+| .+..+++|++|++++|.++.+++ +..+++|+.+++++|. +.+ .+ . +.. ++|+.|++++|.+++
T Consensus 52 ~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~----l~~-l~--~-~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 52 NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR----LKN-LN--G-IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC----CSC-CT--T-CCC-SSCCEEECCSSCCSB
T ss_pred Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc----cCC-cC--c-ccc-CcccEEEccCCccCC
Confidence 345555 45666777777777777766655 6667777777777665 221 22 1 222 667777777777776
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|. +..++. .+++|+.|++++++
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 54 4677778888888888777665 56777788888888775 333332 23667777776543
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=4.8e-15 Score=112.91 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=65.4
Q ss_pred CcccccccccccccceecChh-hhcCCCCCeeeccccccCCc---------------------------cccccccccCC
Q 041851 13 NLEALWSLHAIGTAIREVPSS-FFRLNNIDLLSFQRSRGHKQ---------------------------MSLSLPITLSL 64 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~l~l~~n~~~~~---------------------------~~~~~~~~~~~ 64 (151)
.+++|++|++++|.++.+|.. +..+++|+.+++++|..... +. .+| ..+
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS--DDF 507 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC--GGG
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC--hhh
Confidence 455666666666666655543 23355566666655542210 11 222 233
Q ss_pred C--CCCcccEEEcccCCCCccCcccCCCCCCCEEeCC------CCCCc-cCCcchhccCccCEEeccCCcccccCCC-CC
Q 041851 65 D--GLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQ------ENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK-LP 134 (151)
Q Consensus 65 ~--~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~------~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~ 134 (151)
. .+++|+.|++++|.++++|..++.+++|+.|+++ +|.+. .+|..+..+++|+.|++++|.. +.+|. ..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 2 4555555555555555555555555555555552 23333 4455555555555555555543 55554 23
Q ss_pred CCcceEcccCCc
Q 041851 135 CKLHELDAHHCT 146 (151)
Q Consensus 135 ~~l~~l~l~~~~ 146 (151)
++|+.|++++|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 556666665553
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=7.4e-15 Score=115.08 Aligned_cols=126 Identities=14% Similarity=0.206 Sum_probs=71.5
Q ss_pred CcccccccccccccceecChhhhcC--------CCCCeeeccccccCCccccccccccCCC--CCCcccEEEcccCCCCc
Q 041851 13 NLEALWSLHAIGTAIREVPSSFFRL--------NNIDLLSFQRSRGHKQMSLSLPITLSLD--GLHTLTYLNLTDCGITR 82 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~l--------~~L~~l~l~~n~~~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~ 82 (151)
.+++|+.|++++|.++.+|..+... ++|+.|+++.|. +. .+| ..+. .+++|+.|++++|.+++
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~----L~-~lp--~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK----LT-SLS--DDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC----CC-CCC--GGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC----Cc-cch--HHhhhccCCCcCEEEeCCCCCCc
Confidence 4455555555555555444322221 145555555443 22 233 3343 56666666666666666
Q ss_pred cCcccCCCCCCCEEeCCC------CCCc-cCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQE------NNFE-RIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~------n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l~~~~ 146 (151)
+|..++.+++|+.|++++ |.+. .+|..+..+++|+.|++++|.. +.+|. ..++|+.|++++|+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 666666666666666654 4444 5566666667777777777653 66665 34667777777665
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=107.83 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=103.3
Q ss_pred CChhccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-
Q 041851 7 LPDELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR- 82 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~- 82 (151)
+|..+..+++|++|++++|.++. +|..+..+++|+.+++++|. +.+..|. ..+..+++|+.+++++|.+++
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~----l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS----VSYDEKK-GDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC----CBCCGGG-CSCCCCTTCCEEECCSSCCCGG
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc----CCccccc-chhccCccCCEEECcCCCCCcc
Confidence 56777888888888888888874 34567788888888888776 4443441 346778899999999999876
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
.+..+. ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|.. +++|+.|++++++
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 554443 79999999999999999888899999999999985 5677753 3778999998765
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=8.3e-15 Score=105.41 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=103.0
Q ss_pred cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851 14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL 93 (151)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L 93 (151)
.++|+.|++++|.++.. +.+..+++|+.+++++|. +.+..+ ..+..+++|+.+++++|.+++++..+..+++|
T Consensus 225 ~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L 297 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----LEKIMY--HPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297 (390)
T ss_dssp CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC----CCEEES--GGGTTCSSCCEEECCSSCCCEEECSSSCCTTC
T ss_pred cccccEEECCCCCCccc-HHHcCCCCccEEECCCCc----CCCcCh--hHccccccCCEEECCCCcCcccCcccCCCCCC
Confidence 35788888888887765 457788999999999876 555556 77888999999999999999887777889999
Q ss_pred CEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCc
Q 041851 94 EELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCT 146 (151)
Q Consensus 94 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~ 146 (151)
+.|++++|.++.+|..+..+++|+.|++++|. +..++ ..+++|+.|++++++
T Consensus 298 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 99999999999888888889999999999986 44444 456889999998764
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=106.13 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=54.6
Q ss_pred CCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
+..+|..+. ++++.|++++|.++.++ ..+..+++|+.|++++|. +....+ ..|..+++|+.|++++|.+++
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~--~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----IRTIEI--GAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC----CCEECG--GGGTTCSSCCEEECCSSCCSS
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc----CCccCh--hhccCCccCCEEECCCCcCCe
Confidence 445554432 45555566655555433 345555555555555544 222222 344455555555555555555
Q ss_pred cCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCC
Q 041851 83 LPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYC 124 (151)
Q Consensus 83 ~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n 124 (151)
++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 332 34455555555555555543332 3334444444444443
No 63
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=108.89 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=60.7
Q ss_pred CCCC-ChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 4 LQRL-PDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 4 l~~l-p~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
+..+ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+.
T Consensus 44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR----LKLIPL--GVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCSCCT--TSSTTCTTCCEEECTTSCCC
T ss_pred cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc----CCccCc--ccccCCCCCCEEECCCCccc
Confidence 4444 34566777777777777777644 4566667777777777664 222222 33445555555555555555
Q ss_pred c-cCcccCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCC
Q 041851 82 R-LPENIGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 82 ~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n 124 (151)
+ .+..+..+++|+.|++++|.++. .+..+..+++|+.|++++|
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 4 23344445555555555554442 2223444444444444444
No 64
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=7.5e-16 Score=96.99 Aligned_cols=110 Identities=24% Similarity=0.300 Sum_probs=95.2
Q ss_pred CCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-
Q 041851 6 RLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP- 84 (151)
Q Consensus 6 ~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~- 84 (151)
.+|..+..+++|++|++++|.++.+ ..+..+++|+.+++++|. +.+..| ..+..+++|+.+++++|.+++++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR----VSGGLE--VLAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC----CCSCTH--HHHHHCTTCCEEECTTSCCCSHHH
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc----ccchHH--HHhhhCCCCCEEECCCCcCCChHH
Confidence 7888889999999999999999877 668889999999999887 444455 55667899999999999999854
Q ss_pred -cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEecc
Q 041851 85 -ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLR 122 (151)
Q Consensus 85 -~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~ 122 (151)
..++.+++|++|++++|.++..+. .+..+++|+.|+++
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 788999999999999999997765 67889999999886
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=3.7e-15 Score=112.58 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=102.0
Q ss_pred ccCCCCC-hhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 2 FHLQRLP-DELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 2 ~~l~~lp-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
.+|..+| ..|..+++|++|++++|.++.+++ .|..+++|++|++++|+ +....+ ..|..+++|+.|++++|.
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~----l~~l~~--~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLAL--GAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----CCEECG--GGGTTCTTCCEEECTTSC
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc----CCCCCH--HHhcCCCCCCEEECCCCc
Confidence 3567777 468999999999999999998765 68899999999999887 443334 568899999999999999
Q ss_pred CCccCc-ccCCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCcc
Q 041851 80 ITRLPE-NIGQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 80 l~~~~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~ 126 (151)
+++++. .++.+++|++|++++|.++ ..|..+..+++|++|++++|..
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999664 6889999999999999987 4577888999999999999864
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=2.4e-14 Score=99.57 Aligned_cols=131 Identities=24% Similarity=0.271 Sum_probs=93.5
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..++. +..+++|++|++++|.++.++. +..+++|+.+++++|. +... +.+..+++|+.|++++|.+++
T Consensus 79 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~----i~~~----~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 79 KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG----ISDI----NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC----CCCC----GGGGGCTTCCEEECCSSCCCC
T ss_pred ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc----CCCC----hhhcCCCCCCEEEccCCcCCc
Confidence 4555665 7778888888888888776654 7778888888888765 2221 245567788888888888877
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++. .+++|+.|++++++
T Consensus 149 ~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 6 467778888888888888876655 7777888888888874 455553 23677777777654
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=5e-15 Score=105.78 Aligned_cols=137 Identities=22% Similarity=0.259 Sum_probs=107.8
Q ss_pred cCCCCChh-cc-CcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 3 HLQRLPDE-LG-NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 3 ~l~~lp~~-~~-~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
+|..++.. +. .+++|++|++++|.++.++ ..+..+++|+.|++++|. +....+ ..|..+++|+.|++++|.
T Consensus 50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH----LHTLDE--FLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSC
T ss_pred CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc----CCcCCH--HHhCCCcCCCEEECCCCc
Confidence 45666644 44 8999999999999999776 468899999999999887 444444 568889999999999999
Q ss_pred CCcc-CcccCCCCCCCEEeCCCCCCccCCcch----hccCccCEEeccCCcccccCCC-C---CCC--cceEcccCCc
Q 041851 80 ITRL-PENIGQLSSLEELDLQENNFERIPESI----TQRSKLGRLSLRYCERLQSLSK-L---PCK--LHELDAHHCT 146 (151)
Q Consensus 80 l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~~~~~-~---~~~--l~~l~l~~~~ 146 (151)
++++ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|. +..+|. . ++. ++.|++.+++
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 9984 668889999999999999999888754 568999999999985 556652 1 122 3667777543
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=2.7e-14 Score=104.36 Aligned_cols=136 Identities=27% Similarity=0.355 Sum_probs=82.3
Q ss_pred cCCCCC-hhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLP-DELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..++ ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 75 QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR----LTTIPN--GAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC----CSSCCT--TTSCSCSSCCEEECCSCCC
T ss_pred cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc----CCeeCH--hHhhccccCceeeCCCCcc
Confidence 344454 66788888899999988888665 467788888888888776 332223 4566777777777777777
Q ss_pred CccCc-ccCCCCCCCEEeCCCC-CCccCCc-chhccCccCEEeccCCcccccCCCC--CCCcceEcccCC
Q 041851 81 TRLPE-NIGQLSSLEELDLQEN-NFERIPE-SITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHC 145 (151)
Q Consensus 81 ~~~~~-~~~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~ 145 (151)
++++. .+..+++|+.|++++| .+..++. .+..+++|+.|++++|. +..+|.. +++|+.|++++|
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTS
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCC
Confidence 76433 4555666666666553 3333333 34455555555555552 3344432 244444444433
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=108.03 Aligned_cols=135 Identities=23% Similarity=0.269 Sum_probs=86.7
Q ss_pred cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+ .+.+++|++++|.++.++ ..+..+++|+.+++++|. +.+..+ ..|..+++|++|++++|.++
T Consensus 18 ~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~--~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 18 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred CccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCc----CCccCc--ccccCchhCCEEeCcCCcCC
Confidence 455666543 246777777777777553 367777777777777665 333334 55667777777777777777
Q ss_pred ccC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851 82 RLP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 82 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~ 145 (151)
+++ ..+..+++|++|++++|.++.++. .++.+++|++|++++|.... .+|.. +++|++|+++++
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 643 466677777777777777765554 46667777777777764322 24432 356677776655
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.1e-14 Score=99.92 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=106.0
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++.+++ .+..+++|++|++++|.++.++ .+..+++|+.+++++|. +.+ .+ . +..+++|+.|++++|.+++
T Consensus 30 ~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~----i~~-~~--~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 30 SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ----ISD-LS--P-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC----CCC-CG--G-GTTCSSCCEEECCSSCCSC
T ss_pred Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc----cCC-Ch--h-hccCCCCCEEECCCCccCC
Confidence 455566 5678899999999999999887 68889999999999886 332 23 3 7789999999999999998
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
++.... ++|+.|++++|.++.++ .+..+++|+.|++++|. +..++. .+++|+.|++++|.
T Consensus 100 l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC
T ss_pred cCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc
Confidence 765333 99999999999999775 58889999999999985 566664 34889999998764
No 71
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.8e-14 Score=93.09 Aligned_cols=117 Identities=21% Similarity=0.338 Sum_probs=90.0
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+ .+++++|++++|.++.++. .+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.++
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 18 GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ----IQSLPD--GVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc----ceEeCh--hHccCCCccCEEECCCCCcc
Confidence 466777554 3688999999998887665 46778889999998776 333333 45678889999999999988
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCccc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERL 127 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~ 127 (151)
+++. .+..+++|++|++++|.++.+|.. +..+++|+.+++++|+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 8654 467888999999999988877764 467888999999988643
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=106.90 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=91.7
Q ss_pred cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|. .+..+++|++|++++|.++.+ +..+..+++|+++++++|. +....+ ..++.+++|+.+++++|.+
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY----LSNLSS--SWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CSSCCH--HHHTTCTTCSEEECTTCCC
T ss_pred cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc----CCcCCH--hHhCCCccCCEEECCCCCC
Confidence 4556664 677888888888888888865 4467788888888888775 332222 3366777788888888877
Q ss_pred CccCc--ccCCCCCCCEEeCCCC-CCccC-CcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851 81 TRLPE--NIGQLSSLEELDLQEN-NFERI-PESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC 145 (151)
Q Consensus 81 ~~~~~--~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~ 145 (151)
++++. .+..+++|++|++++| .++.+ +..+..+++|+.+++++|......|.. +++|++|+++++
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 77654 5667788888888777 35544 345667777777877777543333332 245566666544
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=3e-14 Score=104.41 Aligned_cols=61 Identities=39% Similarity=0.662 Sum_probs=31.2
Q ss_pred CCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCC
Q 041851 63 SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYC 124 (151)
Q Consensus 63 ~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n 124 (151)
.+..+++|+.|++++|.+++++ .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred hccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 3445555666666655555543 344455555555555555522 334444445555555544
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=7.6e-15 Score=102.86 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCChhc--cCcccccccccccccceecChhhhcC-----CCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC
Q 041851 6 RLPDEL--GNLEALWSLHAIGTAIREVPSSFFRL-----NNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC 78 (151)
Q Consensus 6 ~lp~~~--~~l~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 78 (151)
.+|..+ ..+++|++|++++|.++..|..+..+ ++|+++++++|. +.+..+ ..++.+++|+.+++++|
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~----l~~~~~--~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH----SLNFSC--EQVRVFPALSTLDLSDN 183 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS----CCCCCT--TTCCCCSSCCEEECCSC
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC----CccchH--HHhccCCCCCEEECCCC
Confidence 355554 66777777777777777556555555 677777777665 333344 45666677777777777
Q ss_pred CCCc---cCccc--CCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccCCcccccCC-C---CCCCcceEcccCC
Q 041851 79 GITR---LPENI--GQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRYCERLQSLS-K---LPCKLHELDAHHC 145 (151)
Q Consensus 79 ~l~~---~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~-~---~~~~l~~l~l~~~ 145 (151)
.+.+ ++..+ ..+++|++|++++|.++.++. .+..+++|+.|++++|......| . .+++|++|++++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 6543 23333 566666666666666663322 12344666666666664333221 1 1255666666655
Q ss_pred c
Q 041851 146 T 146 (151)
Q Consensus 146 ~ 146 (151)
.
T Consensus 264 ~ 264 (312)
T 1wwl_A 264 G 264 (312)
T ss_dssp C
T ss_pred c
Confidence 3
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=105.46 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=110.7
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. ++++.|++++|.++.+ +..+..+++|+.|++.+|. +....| ..+..+++|+.|++++|.++
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~--~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----VSAVEP--GAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCC
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc----cCEeCh--hhhhCCccCCEEECCCCcCC
Confidence 5778887653 6899999999999976 4588999999999999886 555556 78899999999999999999
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC---CCCCcceEcccCCc
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK---LPCKLHELDAHHCT 146 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~l~l~~~~ 146 (151)
+++. .+..+++|++|++++|.++ ..+..+..+++|+.|++++|......+. .+++|+.|++++|.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 9765 5788999999999999999 4466788999999999999864333232 23678888887653
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.9e-14 Score=101.37 Aligned_cols=120 Identities=14% Similarity=0.254 Sum_probs=72.3
Q ss_pred CCCCCh-hccCcccccccccccccce---ecChhhhcCCCCCeeeccccccCCc-----------------ccccccccc
Q 041851 4 LQRLPD-ELGNLEALWSLHAIGTAIR---EVPSSFFRLNNIDLLSFQRSRGHKQ-----------------MSLSLPITL 62 (151)
Q Consensus 4 l~~lp~-~~~~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~~~~ 62 (151)
+..++. .+..+++|++|++++|.++ ..+..+..+++|+.+++++|..... +....+ .
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~--~ 210 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA--A 210 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT--G
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH--H
Confidence 444442 3566667777777766664 2234556666666666665532110 122223 4
Q ss_pred CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851 63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 125 (151)
.+..+++|+.|++++|.+++++ ..+..+++|+.|++++|.++.+|..+..+++|+.+++++|.
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 5566667777777777776633 35666777777777777777777666667777777777764
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=1.7e-14 Score=110.34 Aligned_cols=113 Identities=24% Similarity=0.362 Sum_probs=50.5
Q ss_pred CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
+..+|..+. +++++|++++|.++.+++ .+..+++|+++++++|. +.+..| ..++.+++|+.|++++|.+++
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEP--ELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCT--THHHHCTTCCEEECCSSCCCC
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCH--HHHhcccCcCEEECCCCccCc
Confidence 444554332 455555555555554433 35555555555555443 222222 333344444444444444444
Q ss_pred cCc-ccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCC
Q 041851 83 LPE-NIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYC 124 (151)
Q Consensus 83 ~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n 124 (151)
++. .++.+++|++|++++|.++.++ ..++.+++|++|++++|
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 332 2444444444444444444332 23444444444444444
No 78
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=4.4e-14 Score=103.29 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=92.3
Q ss_pred cccccccccccccee-cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-CcccCCCCC
Q 041851 15 EALWSLHAIGTAIRE-VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PENIGQLSS 92 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~ 92 (151)
++|++|++++|.++. .|..+..+++|+.+++++|. +.+..+ ..+..+++|+.|++++|.++++ +..+..+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE----INKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc----ccccCh--hHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 578888888888874 45567778888888888776 444445 6677788888888888888774 556778888
Q ss_pred CCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851 93 LEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT 146 (151)
Q Consensus 93 L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~ 146 (151)
|+.|++++|.++.+ |..+..+++|+.|++++|. +..+|. .+++|+.|++++++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 88888888888844 6677788888888888875 445553 23678888887654
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.7e-14 Score=109.07 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=102.7
Q ss_pred ccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCC
Q 041851 15 EALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLE 94 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~ 94 (151)
++|+.|++++|.++.. ..+..+++|+.|++++|. +.+..| ..++.+++|+.|++++|.+++++..+..+++|+
T Consensus 232 ~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 304 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----LEKIMY--HPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304 (597)
T ss_dssp SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC----CCEEES--GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc----cCCCCH--HHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence 4677777888777754 567888999999999876 555566 778899999999999999999887788899999
Q ss_pred EEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCc
Q 041851 95 ELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCT 146 (151)
Q Consensus 95 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~ 146 (151)
.|++++|.++.+|..+..+++|+.|++++|.. ..++ ..+++|+.|++++++
T Consensus 305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCCC
Confidence 99999999999998888999999999999864 4444 456889999998765
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.8e-14 Score=108.43 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=92.1
Q ss_pred cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCE
Q 041851 16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE 95 (151)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~ 95 (151)
.|+.|++++|.++.+|. +..+++|+.|+++.|. +. .+| ..++.+++|+.|++++|.++++| .++.+++|+.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~----l~-~lp--~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR----LR-ALP--PALAALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC----CC-CCC--GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc----cc-ccc--hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 46778888888888876 8888999999999876 33 456 67888889999999999998887 7888999999
Q ss_pred EeCCCCCCccC--CcchhccCccCEEeccCCcccccCCCC-------CCCcceEc
Q 041851 96 LDLQENNFERI--PESITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELD 141 (151)
Q Consensus 96 L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~ 141 (151)
|++++|.++.+ |..++.+++|+.|++++|+ +..+|.. +++|+.|+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 99999998866 7888889999999999986 4444432 35666654
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=109.28 Aligned_cols=133 Identities=22% Similarity=0.361 Sum_probs=88.4
Q ss_pred CChhccCcccccccccccccceecC--hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc--
Q 041851 7 LPDELGNLEALWSLHAIGTAIREVP--SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-- 82 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-- 82 (151)
+|..+..+++|++|++++|.+...+ ..+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.+.+
T Consensus 388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFN--GIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC----CEECCT--TTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc----ccccch--hhhhcCCcCcEEECcCCcCcccc
Confidence 3433555566666666666555332 245556666666666554 333444 567778888888888888762
Q ss_pred cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC-C---CCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~~ 146 (151)
+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++. . +++|+.|++++++
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 777788888888888888888844 6677788888888888875 344442 2 3677888887654
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2e-14 Score=108.90 Aligned_cols=110 Identities=24% Similarity=0.344 Sum_probs=62.7
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
.+..+| .+..+++|+.|++++|.++.+++ +..+++|+.|+++.|.... + +.+..+++|+.|++++|.+.+
T Consensus 54 ~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l--~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 54 DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------L--SSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------C--TTSTTCTTCCEEECTTSCCCC
T ss_pred CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------C--hhhccCCCCCEEEecCCCCCC
Confidence 345555 46777788888888887776654 6677777777777665211 1 234455555555555555554
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|
T Consensus 124 l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS
T ss_pred Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC
Confidence 32 344455555555555555443 33444445555555544
No 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=2.7e-14 Score=101.14 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=83.3
Q ss_pred ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCC
Q 041851 11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQL 90 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l 90 (151)
+..+++|++|++++|.++.++. +..+++|+.+++++|. +.. . +.+..+++|+.+++++|.+++++ .+..+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~----l~~-~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~l 286 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ----ISD-I---NAVKDLTKLKMLNVGSNQISDIS-VLNNL 286 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-C---GGGTTCTTCCEEECCSSCCCCCG-GGGGC
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc----cCC-C---hhHhcCCCcCEEEccCCccCCCh-hhcCC
Confidence 4556666666666666665544 5666667777776554 221 1 24566777888888888777763 46777
Q ss_pred CCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 91 SSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 91 ~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
++|+.|++++|.++ ..+..+..+++|+.+++++|+. ..++. .+++|+.|++++|.
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCGGGGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccccChhhhhccceeehhhhc
Confidence 88888888888777 4445677778888888888763 33332 34778888888775
No 84
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2.7e-14 Score=93.57 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=98.1
Q ss_pred ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-CcccCCCCCCCE
Q 041851 17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PENIGQLSSLEE 95 (151)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~L~~ 95 (151)
-+.++++++.++.+|..+. .+++.+++++|. +....+ ...+..+++|+.|++++|.++++ +..+..+++|+.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~----i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNE----LGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCC----CCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCc----CCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 3689999999998887543 389999999886 333333 02477899999999999999994 678999999999
Q ss_pred EeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 96 LDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
|++++|.++.++. .+..+++|+.|++++|......|.. +++|++|++++++
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9999999995544 5888999999999999754444543 4789999998764
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=4.1e-14 Score=106.82 Aligned_cols=118 Identities=25% Similarity=0.275 Sum_probs=63.9
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+..+++|++|++++|.++.+ |..+..+++|+.+++.+|. +....+. ..+..+++|+.+++++|.+.
T Consensus 289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT----KRLELGT-GCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS----SCCBCCS-STTTTCTTCCEEECCSSCCC
T ss_pred ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC----cccccch-hhhhccCcCCEEECCCCccc
Confidence 3455666666666666666666666644 3355566666666666553 1212220 23455566666666666655
Q ss_pred cc---CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCc
Q 041851 82 RL---PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 82 ~~---~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~ 125 (151)
+. +..+..+++|++|++++|.++ ..|..+..+++|+.|++++|.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 42 344555566666666655555 233344455555555555553
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=6.4e-14 Score=98.85 Aligned_cols=114 Identities=19% Similarity=0.301 Sum_probs=80.3
Q ss_pred cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. ++++.|++++|.++.++ ..+..+++|+.+++++|. +....| ..+..+++|+.|++++|.++
T Consensus 44 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~ 115 (332)
T 2ft3_A 44 GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK----ISKIHE--KAFSPLRKLQKLYISKNHLV 115 (332)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECG--GGSTTCTTCCEEECCSSCCC
T ss_pred CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc----cCccCH--hHhhCcCCCCEEECCCCcCC
Confidence 4556666543 57788888888887654 467778888888888765 444445 66777788888888888877
Q ss_pred ccCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851 82 RLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER 126 (151)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 126 (151)
++|..+. ++|++|++++|.++.++. .+..+++|+.|++++|..
T Consensus 116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 7665554 677778887777775554 466777777777777653
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=7.1e-14 Score=105.92 Aligned_cols=131 Identities=24% Similarity=0.280 Sum_probs=100.9
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|. +..+++|+.|++++|.++.++ .+..+++|+.|+++.|. +.. . +.+..+++|+.|++++|.+++
T Consensus 76 ~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~----l~~-l---~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 76 KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG----ISD-I---NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC----CCC-C---GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC----CCC-C---ccccCCCccCEEECCCCccCC
Confidence 4556665 778888999999998888765 57788889999998776 222 1 346678889999999998887
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~ 146 (151)
+ ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|. +..++. .+++|+.|++++|.
T Consensus 146 l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 7 567888899999999998886655 7788889999999884 455553 24788888888764
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=9.4e-14 Score=104.28 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=95.5
Q ss_pred CChhccCcccccccccccccceecC---hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-
Q 041851 7 LPDELGNLEALWSLHAIGTAIREVP---SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR- 82 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~- 82 (151)
+|..+..+++|++|++++|.++.++ ..+..+++|+.+++++|. +.+..|. ..+..+++|+.+++++|.+++
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~----l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS----LNSHAYD-RTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC----CBSCCSS-CCCCCCTTCCEEECCSSCCCGG
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc----CCCccCh-hhhcCcccCCEEECCCCCCCcc
Confidence 5666777777888888887777544 346677778888887765 3333331 346667788888888888765
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
.+..+. ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|.. +++|+.|++++++
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 444333 68899999999888888877788899999999885 5577753 3678888888764
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=1.1e-13 Score=97.53 Aligned_cols=124 Identities=22% Similarity=0.338 Sum_probs=52.3
Q ss_pred ccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851 11 LGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG 88 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~ 88 (151)
+..+++|++|++++|.++.+ |..+..+++|+++++++|... ..| ..+ .++|+.+++++|.+++++ ..+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~l~--~~~--~~~L~~L~l~~n~l~~~~~~~~~ 142 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-----ELP--EKM--PKTLQELRVHENEITKVRKSVFN 142 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-----BCC--SSC--CTTCCEEECCSSCCCBBCHHHHT
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-----ccC--hhh--cccccEEECCCCcccccCHhHhc
Confidence 44445555555555554433 334444555555555544311 111 111 123333344333333322 1244
Q ss_pred CCCCCCEEeCCCCCCc---cCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcccC
Q 041851 89 QLSSLEELDLQENNFE---RIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDAHH 144 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l~~ 144 (151)
.+++|+.|++++|.++ ..+..+..+++|+.+++++|. +..+|. ..++|++|++++
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDG 201 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTT
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCC
Confidence 4555555555555443 223344445555555555543 333332 124444444443
No 90
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=4.2e-14 Score=103.38 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=102.5
Q ss_pred CChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cC
Q 041851 7 LPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LP 84 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~ 84 (151)
.|..+..+++|++|++++|.++.+ +..+..+++|+.+++++|. +....+ ..+..+++|+.|++++|.+++ .+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF----LGSIDS--RMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCEECG--GGGTTCTTCCEEECCSSCCCEECT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc----cCCcCh--hHhcCcccCCEEECCCCcccccCh
Confidence 467788999999999999999966 5588899999999999886 444555 678899999999999999998 47
Q ss_pred cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851 85 ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 85 ~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
..+..+++|++|++++|.++.+|. .+..+++|+.+++++|+.....|
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 789999999999999999997776 45789999999999998665555
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=5.2e-14 Score=107.59 Aligned_cols=136 Identities=23% Similarity=0.250 Sum_probs=104.9
Q ss_pred cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|. .+..+++|++|++++|.++.+ |..+..+++|+.+++++|. +....+ ..++.+++|+++++++|.+
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~--~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE----LSQLSD--KTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCC
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc----cCccCh--hhhccCCCCCEEECCCCcc
Confidence 4666774 588899999999999999855 5678899999999999776 332223 4688889999999999998
Q ss_pred CccC-cccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC------CCCCcceEcccCC
Q 041851 81 TRLP-ENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK------LPCKLHELDAHHC 145 (151)
Q Consensus 81 ~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~------~~~~l~~l~l~~~ 145 (151)
++++ ..++.+++|++|++++|.++ ..+..+..+++|+.|++++|.. ..++. ...+|+.|++++|
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCC
Confidence 8855 57888999999999999888 4455677888999999998853 33332 1267888888766
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=5.4e-15 Score=95.62 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=95.3
Q ss_pred cCCCCChhccCcc-cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLE-ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~-~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|. +..+. +|++|++++|.++.+ ..+..+++|+.+++++|. +....+ ..+..+++|+.+++++|.++
T Consensus 30 ~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 30 KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR----ICRIGE--GLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC----CCEECS--CHHHHCTTCCEEECCSCCCC
T ss_pred CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc----ccccCc--chhhcCCCCCEEECCCCcCC
Confidence 4666664 44444 999999999999977 568889999999999887 433222 33478899999999999998
Q ss_pred ccCc--ccCCCCCCCEEeCCCCCCccCCcc----hhccCccCEEeccCCc
Q 041851 82 RLPE--NIGQLSSLEELDLQENNFERIPES----ITQRSKLGRLSLRYCE 125 (151)
Q Consensus 82 ~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~ 125 (151)
+++. .+..+++|+.|++++|.++.+|.. +..+++|+.++++.|.
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8776 788999999999999999988874 8899999999999885
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=7.6e-15 Score=102.86 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=50.4
Q ss_pred Ccccccccccccccce-ecChhh--hcCCCCCeeeccccccCCccccccccccCCCCC-----CcccEEEcccCCCCccC
Q 041851 13 NLEALWSLHAIGTAIR-EVPSSF--FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGL-----HTLTYLNLTDCGITRLP 84 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~-~~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~l~~~~ 84 (151)
.+++|++|++++|.++ .+|..+ ..+++|+++++++|. +.+. | ..++.+ ++|+.|++++|.+++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~-~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----WATR-D--AWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB----CSSS-S--SHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC----Ccch-h--HHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 3445555555555554 334333 445555555555443 2211 2 222222 45555555555555532
Q ss_pred -cccCCCCCCCEEeCCCCCCc-c--CCcch--hccCccCEEeccCCc
Q 041851 85 -ENIGQLSSLEELDLQENNFE-R--IPESI--TQRSKLGRLSLRYCE 125 (151)
Q Consensus 85 -~~~~~l~~L~~L~l~~n~~~-~--~~~~~--~~~~~L~~l~l~~n~ 125 (151)
..++.+++|++|++++|.+. . ++..+ ..+++|+.|++++|.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 45555555555555555543 1 22222 445555566665553
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.9e-14 Score=101.05 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=87.2
Q ss_pred CcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCccCcccCCC
Q 041851 13 NLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITRLPENIGQL 90 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~l 90 (151)
.+++|++|++++|.++.+++ .+..+++|+.+++++|. +....+ ..+ ..+++|+.+++++|.+++++. ...+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l 190 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNF--AELAASSDTLEHLNLQYNFIYDVKG-QVVF 190 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC----CCEEEG--GGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC----CCcccH--HHHhhccCcCCEEECCCCcCccccc-cccc
Confidence 35667777777777775533 56667778888888765 333333 333 356778888888888877643 3347
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT 146 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~ 146 (151)
++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|.. +++|+.|+++++.
T Consensus 191 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 88888888888888777777778888888888874 4556643 3677888887665
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=4.3e-14 Score=110.66 Aligned_cols=134 Identities=23% Similarity=0.210 Sum_probs=91.9
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCcccccc-ccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSL-PITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|. -.+++++|++++|.++.+ +..+..+++|+.|++++|. ..... | +.+..+++|++|++++|.+
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~----~~~~i~~--~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY----TPLTIDK--EAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC----CCCEECT--TTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC----CccccCH--HHhcCCCCCCEEECCCCcC
Confidence 5677776 356788888888888754 5577788888888888663 12222 4 5677778888888888887
Q ss_pred Cc-cCcccCCCCCCCEEeCCCCCCc-cCCcc--hhccCccCEEeccCCcccccCC-C---CCCCcceEcccCC
Q 041851 81 TR-LPENIGQLSSLEELDLQENNFE-RIPES--ITQRSKLGRLSLRYCERLQSLS-K---LPCKLHELDAHHC 145 (151)
Q Consensus 81 ~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~---~~~~l~~l~l~~~ 145 (151)
++ .|..+..+++|++|++++|.++ ..+.. +..+++|+.|++++|......+ . .+++|++|+++++
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 77 4667777888888888888776 34443 6677788888888775433222 1 2366777777665
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=1.4e-13 Score=101.18 Aligned_cols=119 Identities=22% Similarity=0.341 Sum_probs=56.3
Q ss_pred ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCC
Q 041851 11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQL 90 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l 90 (151)
+..+++|++|++++|.++.++ +..+++|+++++++|. +.+ ..++.+++|+.+++++|.+++++ ++.+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~----l~~-----~~~~~l~~L~~L~L~~N~l~~l~--~~~l 126 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK----LTN-----LDVTPLTKLTYLNCDTNKLTKLD--VSQN 126 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC----CSC-----CCCTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC----Cce-----eecCCCCcCCEEECCCCcCCeec--CCCC
Confidence 444555555555555544443 3444555555555443 111 01444555555555555555543 4555
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccC
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHH 144 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~ 144 (151)
++|++|++++|.++.++ ++.+++|+.+++++|..++.++ ..+++|+.|++++
T Consensus 127 ~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp TTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred CcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 55555555555555432 3444555555555553333332 1124444444443
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=103.32 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=22.5
Q ss_pred CcccccccccccccceecC-hhhhcCCCCCeeeccccc
Q 041851 13 NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSR 49 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~ 49 (151)
.+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 4566666666666666443 355566666666666554
No 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.53 E-value=1.3e-14 Score=108.42 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=91.2
Q ss_pred cCCCC-ChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRL-PDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+ |..+..+++|++|++++|.++.++ ..+..+++|+++++++|. +.+..+ ..++.+++|+.|++++|.+
T Consensus 37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH----LSSLSS--SWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCSCCH--HHHTTCTTCCEEECTTCCC
T ss_pred ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc----cCccCH--HHhccCCCCcEEECCCCcc
Confidence 34444 466788889999999999888654 578888889999998776 443444 4577888888888888888
Q ss_pred Cc--cCcccCCCCCCCEEeCCCCC-CccCC-cchhccCccCEEeccCCcccccCCC
Q 041851 81 TR--LPENIGQLSSLEELDLQENN-FERIP-ESITQRSKLGRLSLRYCERLQSLSK 132 (151)
Q Consensus 81 ~~--~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~ 132 (151)
++ .+..++.+++|++|++++|. +..+| ..+..+++|+.|++++|......|.
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 75 45677888888888888887 45555 3677788888888888765444443
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=7.4e-14 Score=98.52 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=90.3
Q ss_pred cCCCCCh-hccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCc-----------------cccccccc
Q 041851 3 HLQRLPD-ELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQ-----------------MSLSLPIT 61 (151)
Q Consensus 3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~~~ 61 (151)
++..+|. .+..+++|++|++++|.++. .+..+..+ +|+.+++++|..... +....+
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-- 210 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-- 210 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT--
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH--
Confidence 4555654 36677777777777777652 23333333 444444444431110 222233
Q ss_pred cCCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-C------
Q 041851 62 LSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-L------ 133 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~------ 133 (151)
..+..+++|+.+++++|.+++++ ..+..+++|+.|++++|.++.+|..+..+++|+.+++++|. +..++. .
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF 289 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccccc
Confidence 45777788888888888888744 46778888888888888888888888888888888888875 444432 1
Q ss_pred ---CCCcceEcccCCc
Q 041851 134 ---PCKLHELDAHHCT 146 (151)
Q Consensus 134 ---~~~l~~l~l~~~~ 146 (151)
...++.+++.+++
T Consensus 290 ~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSSSCCBSEEECCSSS
T ss_pred ccccccccceEeecCc
Confidence 2446777777654
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.52 E-value=2.3e-13 Score=96.37 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=58.6
Q ss_pred CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+..+|. +..+++|++|++++|.++.++. +..+++|+.+++++|. +.. . +.+..+++|+.+++++|.++++
T Consensus 56 i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~----i~~-~---~~~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 56 VASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK----ITD-I---SALQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-C---GGGTTCTTCSEEECTTSCCCCC
T ss_pred cccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc----ccC-c---hHHcCCCcCCEEECcCCcccCc
Confidence 334442 5556666666666666665544 5566666666666554 111 1 2345556666666666666554
Q ss_pred CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+. +..+++|+.|++++|.....+..+..+++|+.+++++|
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 43 55555555555555533322223444555555555554
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.9e-14 Score=104.88 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=93.0
Q ss_pred Ccccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCccCcccCCC
Q 041851 13 NLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITRLPENIGQL 90 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~l 90 (151)
.+++|+.|++++|.++.+ |..+..+++|+.|++++|. +.+..| ..+. .+++|+.|++++|.+++++. ...+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNF--AELAASSDTLEHLNLQYNFIYDVKG-QVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC----CCEEEG--GGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC----CCCcCh--HHHhhhCCcccEEecCCCccccccc-cccC
Confidence 456778888888888755 4467778888888888776 444444 4443 57888888888888887643 3458
Q ss_pred CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCcc
Q 041851 91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTA 147 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~ 147 (151)
++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|.. +++|+.|+++++..
T Consensus 191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 88888888888888777778888888888888875 4456643 36788888887653
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=98.25 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCChhc--cCccccccccccccccee-cC----hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC
Q 041851 6 RLPDEL--GNLEALWSLHAIGTAIRE-VP----SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC 78 (151)
Q Consensus 6 ~lp~~~--~~l~~L~~L~l~~~~i~~-~~----~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 78 (151)
..|..+ ..+++|++|++++|.++. .+ ..+..+++|+.+++++|. +....+ ..++.+++|+.|++++|
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH----SPAFSC--EQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS----SCCCCT--TSCCCCTTCCEEECCSC
T ss_pred chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC----cchhhH--HHhccCCCCCEEECCCC
Confidence 345555 788999999999999874 23 234468899999999886 444445 66778888888888888
Q ss_pred CCCc---cC--cccCCCCCCCEEeCCCCCCccCCcc----hhccCccCEEeccCCcccccCCCC------CCCcceEccc
Q 041851 79 GITR---LP--ENIGQLSSLEELDLQENNFERIPES----ITQRSKLGRLSLRYCERLQSLSKL------PCKLHELDAH 143 (151)
Q Consensus 79 ~l~~---~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~------~~~l~~l~l~ 143 (151)
.+.+ ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|......|.. +++|++|+++
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 8653 22 2235667777777777777644442 345567777777776543332321 1466666666
Q ss_pred CCc
Q 041851 144 HCT 146 (151)
Q Consensus 144 ~~~ 146 (151)
+|.
T Consensus 260 ~N~ 262 (310)
T 4glp_A 260 FAG 262 (310)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=3.9e-15 Score=104.58 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred cCCCCC-hhccCcccccccccccccceec-Chhh-hcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 3 HLQRLP-DELGNLEALWSLHAIGTAIREV-PSSF-FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
++..++ ..+..+++|++|++++|.++.+ +..+ ..+++|+.+++++|. +... + ....+++|+.+++++|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~----l~~~-~---~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDV-K---GQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC----CCEE-E---CCCCCTTCCEEECCSSC
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc----Cccc-c---cccccccCCEEECCCCc
Confidence 344554 4677899999999999999865 4444 468999999999886 3322 2 23358899999999999
Q ss_pred CCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccc
Q 041851 80 ITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERL 127 (151)
Q Consensus 80 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 127 (151)
+++++..+..+++|+.|++++|.++.+|..+..+++|+.+++++|+..
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 999888899999999999999999999988889999999999999754
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=107.78 Aligned_cols=112 Identities=22% Similarity=0.332 Sum_probs=67.8
Q ss_pred ChhccCcccccccccccccc-eec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cC
Q 041851 8 PDELGNLEALWSLHAIGTAI-REV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LP 84 (151)
Q Consensus 8 p~~~~~l~~L~~L~l~~~~i-~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~ 84 (151)
|..+..+++|++|++++|.. ..+ |..+..+++|+.|++++|. +....| +.++.+++|+.|++++|.+.+ ++
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~----l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK----IYFLHP--DAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC----CCEECT--TSSCSCSSCCCEECTTCCCSSCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc----CcccCH--hHccCCcccCEeeCcCCCCCcccc
Confidence 45566677777777776643 344 4456667777777777655 343444 566666666666666666665 33
Q ss_pred cc--cCCCCCCCEEeCCCCCCccC--CcchhccCccCEEeccCCc
Q 041851 85 EN--IGQLSSLEELDLQENNFERI--PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 85 ~~--~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~ 125 (151)
.. ++.+++|++|++++|.++.+ +..++.+++|+.|++++|.
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 32 56666666666666666533 2345666666666666654
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=3.7e-13 Score=98.97 Aligned_cols=126 Identities=22% Similarity=0.295 Sum_probs=105.0
Q ss_pred hhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccC
Q 041851 9 DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIG 88 (151)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~ 88 (151)
..++++++|++|++++|.++.+| .+..+++|+.++++.|. +.+ .+ ++.+++|+.+++++|.+++++ ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~----l~~-~~----~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN----ITT-LD----LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC----CSC-CC----CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc----CCe-Ec----cccCCCCCEEECcCCCCceee--cC
Confidence 45677899999999999999886 68899999999999886 332 12 678899999999999999875 88
Q ss_pred CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCcccc
Q 041851 89 QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCTALE 149 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~~l~ 149 (151)
.+++|++|++++|.++.++ ++.+++|+.|++++|. +..++ ..+++|+.|++++|..+.
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCC
T ss_pred CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccc
Confidence 9999999999999999875 7889999999999985 44454 235889999999885443
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=4.2e-13 Score=98.61 Aligned_cols=125 Identities=24% Similarity=0.374 Sum_probs=63.2
Q ss_pred CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+..+| .++.+++|++|++++|.++.+|.. ..+|+.+++++|. +.+ .| .++.+++|+.+++++|.++++
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~----l~~-l~---~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ----LEE-LP---ELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC----CSS-CC---CCTTCTTCCEEECCSSCCSSC
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc----CCc-Cc---cccCCCCCCEEECCCCcCCcC
Confidence 34444 355555555555555555544432 2345555555443 111 12 345566666666666665554
Q ss_pred CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851 84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~ 145 (151)
|.. .++|+.|++++|.++.+|. ++.+++|+.+++++|. +..+|..+.+++.|++++|
T Consensus 211 ~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN 267 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSS
T ss_pred CCC---cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCCC
Confidence 432 1355555565555555552 5555666666666653 3444444455555555544
No 107
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.1e-13 Score=88.07 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=64.9
Q ss_pred cccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcc-cCCCCCCCEE
Q 041851 18 WSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEEL 96 (151)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L 96 (151)
+.++++++.++.+|..+. .+++.|++++|. +....| ..+..+++|+.|++++|.+++++.. +..+++|+.|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ----ITKLEP--GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC----ccccCH--HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 456677777766665442 567777777665 333334 5566677777777777777775543 4567777777
Q ss_pred eCCCCCCccCCcc-hhccCccCEEeccCCc
Q 041851 97 DLQENNFERIPES-ITQRSKLGRLSLRYCE 125 (151)
Q Consensus 97 ~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~ 125 (151)
++++|.++.+|.. +..+++|+.|++++|+
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 7777777766553 6666777777777765
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.4e-14 Score=107.54 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=90.0
Q ss_pred ccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCc
Q 041851 25 TAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE 104 (151)
Q Consensus 25 ~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~ 104 (151)
|.+...+..+..+..|+.|++++|. +. .+| ..+..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~----l~-~l~--~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ----IF-NIS--ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp -----------CCCCCCEEECTTSC----CS-CCC--GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred cceecChhhhccCCCCcEEECCCCC----CC-CCC--hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC
Confidence 3333345568889999999999886 33 344 5556889999999999999999999999999999999999999
Q ss_pred cCCcchhccCccCEEeccCCcccccCCCCC---CCcceEcccCCc
Q 041851 105 RIPESITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHHCT 146 (151)
Q Consensus 105 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~~~ 146 (151)
.+|..++.+++|+.|++++|. ++.+|..+ ++|+.|+++++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 999999999999999999984 67888643 788999999876
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.6e-16 Score=104.73 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=103.4
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
.++.+|..+..+++|++|++++|.++.+| .+..+++|+.+++++|. +. .+| ..+..+++|+.+++++|.+++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~----l~-~l~--~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL----IK-KIE--NLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE----EC-SCS--SHHHHHHHCSEEEEEEEECCC
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC----cc-ccc--chhhcCCcCCEEECcCCcCCc
Confidence 35667778889999999999999998887 78889999999999886 33 344 455566889999999999998
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-------------CCCCcceEcc
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-------------LPCKLHELDA 142 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-------------~~~~l~~l~l 142 (151)
++ .+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.....|. .+++|+.|+-
T Consensus 108 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 76 67788999999999999886654 677889999999999875444332 1367777763
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.5e-13 Score=103.45 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=95.7
Q ss_pred ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
.+|..+|. ++.+++|+.|++++|.++.+|..+..+++|+.|+++.|. +.+ +| .++.+++|+.|++++|.++
T Consensus 451 n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~----l~~-lp---~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 451 KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA----LEN-VD---GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC----CCC-CG---GGTTCSSCCEEECCSSCCC
T ss_pred CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC----CCC-Cc---ccCCCCCCcEEECCCCCCC
Confidence 36778887 899999999999999999999999999999999999887 332 23 5788999999999999999
Q ss_pred cc--CcccCCCCCCCEEeCCCCCCccCCcch----hccCccCEEec
Q 041851 82 RL--PENIGQLSSLEELDLQENNFERIPESI----TQRSKLGRLSL 121 (151)
Q Consensus 82 ~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~l~l 121 (151)
++ |..++.+++|+.|++++|.++..|+.. ..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 96 889999999999999999998766533 34788988864
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=4.2e-13 Score=88.04 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=98.2
Q ss_pred ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCCE
Q 041851 17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEE 95 (151)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~ 95 (151)
-+.++++++.++.+|..+ .++++.+++.+|. +. .+| ..+..+++|+.|++++|.+++++ ..+..+++|+.
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~----i~-~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQ----FT-LVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSC----CC-SCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCc----Cc-hhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 357889999999888654 3689999999886 33 445 67888999999999999999955 56889999999
Q ss_pred EeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 96 LDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
|++++|.++.++. .+..+++|+.|++++|. +..+|.. +++|+.|++.+++
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 9999999996655 68899999999999985 5566642 4789999998654
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.1e-13 Score=86.97 Aligned_cols=101 Identities=23% Similarity=0.353 Sum_probs=68.5
Q ss_pred ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCCE
Q 041851 17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEE 95 (151)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~ 95 (151)
.+.++++++.++.+|..+ ..+++.+++++|. +....+ ..+..+++|+.|++++|.+++++. .+..+++|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~----i~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ----ITKLEP--GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCc----CCccCh--hhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 456777777777766544 3667777777665 443444 556677777777777777777554 3467777777
Q ss_pred EeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851 96 LDLQENNFERIPE-SITQRSKLGRLSLRYCE 125 (151)
Q Consensus 96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~ 125 (151)
|++++|.++.++. .+..+++|+.|++++|+
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777777776655 46667777777777775
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=7.6e-13 Score=99.61 Aligned_cols=121 Identities=30% Similarity=0.409 Sum_probs=58.4
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..+. ++|+.|++++|.++.+| ..+++|+.|+++.|. +.. +| . +.. +|+.|++++|.+++
T Consensus 70 ~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~----l~~-ip--~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 70 NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR----LST-LP--E-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC----CSC-CC--C-CCT--TCCEEECCSSCCSC
T ss_pred CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC----CCC-cc--h-hhc--CCCEEECCCCcCCC
Confidence 3555665442 56777777777666665 335666666666654 221 22 2 222 45555555555554
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~ 145 (151)
+|. .+++|+.|++++|.++.+|. .+++|+.|++++|. +..+|.+.++|+.|++++|
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN 190 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC
Confidence 443 34444445554444444443 23344444444442 2223332234444444433
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=6.6e-15 Score=103.79 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=38.5
Q ss_pred CCCcccEEEcccC-CCCc--cCcccCCCC-CCCEEeCCCCC--Cc--cCCcchhccCccCEEeccCCcccc-cCCC---C
Q 041851 66 GLHTLTYLNLTDC-GITR--LPENIGQLS-SLEELDLQENN--FE--RIPESITQRSKLGRLSLRYCERLQ-SLSK---L 133 (151)
Q Consensus 66 ~~~~L~~l~l~~~-~l~~--~~~~~~~l~-~L~~L~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n~~~~-~~~~---~ 133 (151)
.+++|+.|++++| .+++ ++..+..++ +|++|++++|. ++ .++..+..+++|+.|++++|..+. ..+. .
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 3445555555555 4443 333444455 55555555552 22 334444455555555555554221 1111 1
Q ss_pred CCCcceEcccCCc
Q 041851 134 PCKLHELDAHHCT 146 (151)
Q Consensus 134 ~~~l~~l~l~~~~ 146 (151)
.++|++|++++|.
T Consensus 246 l~~L~~L~l~~~~ 258 (336)
T 2ast_B 246 LNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCCEEECTTCT
T ss_pred CCCCCEeeCCCCC
Confidence 2556666666554
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=5.9e-13 Score=100.23 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=48.2
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
+|..+| ..+++|+.|++++|.++.+|. +.. +|+.|++++|. +.+ +| . .+++|+.|++++|.+++
T Consensus 91 ~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~----l~~-lp--~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 91 ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ----LTM-LP--E---LPALLEYINADNNQLTM 154 (571)
T ss_dssp CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC----CSC-CC--C---CCTTCCEEECCSSCCSC
T ss_pred CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc----CCC-CC--C---cCccccEEeCCCCccCc
Confidence 455555 345666777777776666555 332 56666666554 221 22 2 23444444444444444
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|
T Consensus 155 lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 155 LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 433 23444444444444444433 22 34444444443
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=1.5e-12 Score=84.07 Aligned_cols=122 Identities=21% Similarity=0.300 Sum_probs=98.4
Q ss_pred cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCC
Q 041851 16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLE 94 (151)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~ 94 (151)
..+.++.+++.++.+|..+ .++++.+++++|. +....+ ..+..+++|+.+++++|.+++++. .+..+++|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNK----LQSLPH--GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCc----ccEeCH--HHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 3567889999998888543 4789999999886 443334 567889999999999999998665 468999999
Q ss_pred EEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851 95 ELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT 146 (151)
Q Consensus 95 ~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~ 146 (151)
.|++++|.++.++. .+..+++|+.|++++|. +..+|.. +++|++|++++++
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 99999999997766 46788999999999985 5566642 4789999998775
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.6e-13 Score=97.66 Aligned_cols=104 Identities=26% Similarity=0.329 Sum_probs=47.1
Q ss_pred hccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851 10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ 89 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~ 89 (151)
.+..+++|++|++++|.++..++ +..+++|+.+++++|.. .+ .+ .+..+++|+.+++++|.+++++. +..
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l----~~-~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~ 307 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI----SN-IS---PLAGLTALTNLELNENQLEDISP-ISN 307 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC----CC-CG---GGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc----Cc-cc---cccCCCccCeEEcCCCcccCchh-hcC
Confidence 34555666666666666654433 45556666666665531 11 11 13334444444444444444322 334
Q ss_pred CCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 90 LSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
+++|+.|++++|.++..+. +..+++|+.|++++|
T Consensus 308 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 4444444444444443222 333344444444443
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.44 E-value=2e-12 Score=95.14 Aligned_cols=80 Identities=29% Similarity=0.349 Sum_probs=52.8
Q ss_pred CCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcc
Q 041851 64 LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDA 142 (151)
Q Consensus 64 ~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l 142 (151)
+..+++|+.+++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|......| ..+++|+.|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence 5566777777777777776554 6677777777777777776554 6677788888888775332222 12366666666
Q ss_pred cCC
Q 041851 143 HHC 145 (151)
Q Consensus 143 ~~~ 145 (151)
++|
T Consensus 339 ~~n 341 (466)
T 1o6v_A 339 YNN 341 (466)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
No 119
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=4.3e-13 Score=99.35 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred cCCCC-ChhccCccccccccccccccee-cChhhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851 3 HLQRL-PDELGNLEALWSLHAIGTAIRE-VPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG 79 (151)
Q Consensus 3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~-~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 79 (151)
++..+ |..++.+++|++|++++|.++. .|..+. .+++|+.|++++|. +.+. + ....+++|+.|++++|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~----l~~~-~---~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDV-K---GQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC----CCEE-E---CCCCCTTCCEEECCSSC
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc----cccc-c---ccccCCCCCEEECCCCC
Confidence 34444 4567889999999999999985 455665 78999999999887 3332 2 23468899999999999
Q ss_pred CCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccc
Q 041851 80 ITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERL 127 (151)
Q Consensus 80 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 127 (151)
++++++.+..+++|+.|++++|.++.+|..+..+++|+.+++++|+..
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 999888899999999999999999999998889999999999999754
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=2.1e-12 Score=94.89 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEccc
Q 041851 64 LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAH 143 (151)
Q Consensus 64 ~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~ 143 (151)
++.+++|+.+++++|.++++|... .+|++|++++|.++.+| .++.+++|+.+++++|. +..+|..+.+|+.|+++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAG 223 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECc
Confidence 555666666666666666554322 35666666666666555 35556666666666653 34455544555555555
Q ss_pred CC
Q 041851 144 HC 145 (151)
Q Consensus 144 ~~ 145 (151)
+|
T Consensus 224 ~n 225 (454)
T 1jl5_A 224 NN 225 (454)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=2.6e-14 Score=100.74 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=25.4
Q ss_pred cccEEEcccC--CCCc--cCcccCCCCCCCEEeCCCCC-Cc-cCCcchhccCccCEEeccCC
Q 041851 69 TLTYLNLTDC--GITR--LPENIGQLSSLEELDLQENN-FE-RIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 69 ~L~~l~l~~~--~l~~--~~~~~~~l~~L~~L~l~~n~-~~-~~~~~~~~~~~L~~l~l~~n 124 (151)
+|+.|++++| .+++ ++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4555555554 2331 33334444555555555544 33 33334444445555555544
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=84.83 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=82.3
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+ |..+..+++|+.|++++|+ +....+ ..|..+++|+.|++++|.++
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~i~~--~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK----LTAIPT--GVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC----CCccCh--hHhCCcchhhEEECCCCccc
Confidence 5788888664 8999999999999976 5578899999999999887 443333 45788999999999999999
Q ss_pred ccCcc-cCCCCCCCEEeCCCCCCccCCc
Q 041851 82 RLPEN-IGQLSSLEELDLQENNFERIPE 108 (151)
Q Consensus 82 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 108 (151)
+++.. +..+++|++|++++|.+.-.+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred eeCHHHhccccCCCEEEeCCCCcccccc
Confidence 97764 8899999999999999885554
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.1e-12 Score=83.00 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=81.2
Q ss_pred cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
++..+|..+. +++++|++++|.++.+ |..+..+++|+.|++++|+ +....+ ..|..+++|+.|++++|.++
T Consensus 20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ----LTVLPA--GVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC----cCccCh--hhccCCCCCCEEECCCCccC
Confidence 5778887663 8899999999999977 5578899999999999887 444444 56789999999999999999
Q ss_pred ccCc-ccCCCCCCCEEeCCCCCCccC
Q 041851 82 RLPE-NIGQLSSLEELDLQENNFERI 106 (151)
Q Consensus 82 ~~~~-~~~~l~~L~~L~l~~n~~~~~ 106 (151)
+++. .+..+++|+.|++++|.++-.
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9765 588999999999999988733
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=5.2e-12 Score=96.02 Aligned_cols=87 Identities=24% Similarity=0.279 Sum_probs=49.5
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR 82 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 82 (151)
++..+|..+. ++|+.|++++|.++.+|. .+++|+.|++++|.. . .+| . .+++|+.|++++|.+++
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l----~-~lp--~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL----T-SLP--V---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC----S-CCC--C---CCTTCCEEEECSCCCCC
T ss_pred CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC----C-cCC--C---CCCCCCEEECcCCcCCC
Confidence 5666776554 677778888777776665 466777777776652 1 122 1 33455555555555555
Q ss_pred cCcccCCCCCCCEEeCCCCCCccCC
Q 041851 83 LPENIGQLSSLEELDLQENNFERIP 107 (151)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~ 107 (151)
++. .+++|+.|++++|.++.+|
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCC---CCCCcCEEECCCCCCCcCC
Confidence 443 2344444444444444443
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.9e-12 Score=92.07 Aligned_cols=88 Identities=28% Similarity=0.331 Sum_probs=69.1
Q ss_pred CCCCC-CcccEEEcccCCCCccCcccCCCCCCCEEeCC-CCCCccCCc-chhccCccCEEeccCCcccccCCC-CCCCcc
Q 041851 63 SLDGL-HTLTYLNLTDCGITRLPENIGQLSSLEELDLQ-ENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK-LPCKLH 138 (151)
Q Consensus 63 ~~~~~-~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~-~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~ 138 (151)
.+..+ ..++.+++++|.+++++.......+++.+++. +|.++.+|. .+..+++|+.|++++| .++.+|. .+.+|+
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLK 226 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCC
T ss_pred chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccch
Confidence 34444 36888999999999988877778899999997 467778876 5678899999999998 4778875 468888
Q ss_pred eEcccCCcccccC
Q 041851 139 ELDAHHCTALESL 151 (151)
Q Consensus 139 ~l~l~~~~~l~~~ 151 (151)
+|.+.++..++++
T Consensus 227 ~L~~l~~~~l~~l 239 (350)
T 4ay9_X 227 KLRARSTYNLKKL 239 (350)
T ss_dssp EEECTTCTTCCCC
T ss_pred HhhhccCCCcCcC
Confidence 8888877776643
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=2.9e-12 Score=91.12 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=76.6
Q ss_pred cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccE-EEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTY-LNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~-l~l~~~~l 80 (151)
+++++|..+ .+++++|++++|.++.+|. .|..+++|+.|++++|. +.+..+. ..|..++++.. +.+..|.+
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~----i~~~i~~-~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND----VLEVIEA-DVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT----TCCEECT-TSBCSCTTCCEEEEEEETTC
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC----CCCccCh-hHhhcchhhhhhhcccCCcc
Confidence 578899766 3689999999999998876 68899999999999886 2222220 34556665543 44555667
Q ss_pred Ccc-CcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc
Q 041851 81 TRL-PENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ 128 (151)
Q Consensus 81 ~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~ 128 (151)
+.+ +..+..+++|++|++++|.++.++. .+.....+..+++.++..+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 664 3456667777777777776664443 22233344445544433333
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=1.5e-11 Score=93.47 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=29.2
Q ss_pred cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccc
Q 041851 3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR 49 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~ 49 (151)
+|..+|. .+++|++|++++|.++.+|. .+++|+.|++..|.
T Consensus 72 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 72 NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 4556665 46778888888888777765 56777777777664
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8.2e-12 Score=88.47 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=70.1
Q ss_pred cCCCCChhccCccccccccccc-ccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 3 HLQRLPDELGNLEALWSLHAIG-TAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 3 ~l~~lp~~~~~l~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+|. +..+++|+.|++++ |.++.++ ..+..+++|+.|+++.|. +.+..+ ..|..+++|+.|+|++|.+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~----l~~~~~--~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----LRFVAP--DAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----CCEECT--TGGGSCSCCCEEECCSSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----cceeCH--HHhcCCcCCCEEeCCCCcc
Confidence 5777887 78888888888885 8888665 467778888888888776 444445 5677788888888888888
Q ss_pred CccCcccCCCCCCCEEeCCCCCCc
Q 041851 81 TRLPENIGQLSSLEELDLQENNFE 104 (151)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~ 104 (151)
+++|........|+.|++.+|.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 876655444434888888888776
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=1.7e-13 Score=98.47 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=16.1
Q ss_pred cCccccccccccccccee-----cChhhhcCCCCCeeecccc
Q 041851 12 GNLEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRS 48 (151)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n 48 (151)
..+++|++|++++|.++. ++..+..+++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 344444444444444442 2333344444444444433
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.4e-11 Score=87.30 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=84.8
Q ss_pred cccccccc-cceecChhhhcCCCCCeeeccc-cccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCC
Q 041851 18 WSLHAIGT-AIREVPSSFFRLNNIDLLSFQR-SRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLE 94 (151)
Q Consensus 18 ~~L~l~~~-~i~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~ 94 (151)
..++.+++ .++.+|. +..+.+|+.|++++ |. +....+ ..|..+++|+.|++++|.+++++ ..+..+++|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~----l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH----LQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS----CCEECG--GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC----CCCcCh--hHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 35677887 8889998 88999999999995 76 444444 67889999999999999999954 5778999999
Q ss_pred EEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851 95 ELDLQENNFERIPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 95 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~ 126 (151)
.|+|++|.++.+|..+.....|+.|++.+|+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred EEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 99999999998887555444599999999863
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=1.8e-13 Score=98.32 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=70.9
Q ss_pred CChhccCcccccccccccccceec-Ch----hhhcC---------CCCCeeeccccccCCcccccccc-ccCCCCCCccc
Q 041851 7 LPDELGNLEALWSLHAIGTAIREV-PS----SFFRL---------NNIDLLSFQRSRGHKQMSLSLPI-TLSLDGLHTLT 71 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~~-~~----~~~~l---------~~L~~l~l~~n~~~~~~~~~~~~-~~~~~~~~~L~ 71 (151)
+|..+..+++|++|++++|.++.. +. .+..+ ++|+++++++|.... ...+. ...+..+++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHHHHHHHHHCTTCC
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHHHHHHHHhCCCcC
Confidence 444555666666666666666521 11 22222 566666666554211 11110 01233455666
Q ss_pred EEEcccCCCCc------cCcccCCCCCCCEEeCCCCCC-----ccCCcchhccCccCEEeccCCccccc----CCC----
Q 041851 72 YLNLTDCGITR------LPENIGQLSSLEELDLQENNF-----ERIPESITQRSKLGRLSLRYCERLQS----LSK---- 132 (151)
Q Consensus 72 ~l~l~~~~l~~------~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~---- 132 (151)
.|++++|.+++ .+..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|..... ++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 66666666652 122555666666666666666 33455556666666666666643221 222
Q ss_pred -CCCCcceEcccCCc
Q 041851 133 -LPCKLHELDAHHCT 146 (151)
Q Consensus 133 -~~~~l~~l~l~~~~ 146 (151)
..++|++|++++|.
T Consensus 271 ~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 271 LENIGLQTLRLQYNE 285 (386)
T ss_dssp CSSCCCCEEECCSSC
T ss_pred ccCCCeEEEECcCCc
Confidence 14566666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=5.8e-14 Score=92.34 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=99.8
Q ss_pred ccCcccccccccccccce-ecCh------hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851 11 LGNLEALWSLHAIGTAIR-EVPS------SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL 83 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~-~~~~------~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 83 (151)
+.....++.++++++.+. ..|. .+..+++|+.+++++|. +.. .| .+..+++|+.+++++|.++++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~----l~~-l~---~~~~l~~L~~L~l~~n~l~~l 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEK-IS---SLSGMENLRILSLGRNLIKKI 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE----ESC-CC---CHHHHTTCCEEEEEEEEECSC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC----Ccc-cc---ccccCCCCCEEECCCCCcccc
Confidence 345567777788777765 4444 88999999999999886 322 22 456788999999999999998
Q ss_pred CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-----CCCCcceEcccCCc
Q 041851 84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-----LPCKLHELDAHHCT 146 (151)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-----~~~~l~~l~l~~~~ 146 (151)
|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|. +..++. .+++|++|++++|.
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 887778899999999999999876 68888999999999985 444332 35889999998774
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=1.3e-12 Score=93.31 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=18.7
Q ss_pred cccccccccccccceecC-----hhhhcCC-CCCeeeccccc
Q 041851 14 LEALWSLHAIGTAIREVP-----SSFFRLN-NIDLLSFQRSR 49 (151)
Q Consensus 14 l~~L~~L~l~~~~i~~~~-----~~~~~l~-~L~~l~l~~n~ 49 (151)
.++|++|++++|.++..+ ..+..++ +|+.+++++|.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 334666666666555433 2344455 55666665554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=6.9e-12 Score=89.48 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=23.5
Q ss_pred hhccCcc-cccccccccccceec-ChhhhcC-----CCCCeeeccccc
Q 041851 9 DELGNLE-ALWSLHAIGTAIREV-PSSFFRL-----NNIDLLSFQRSR 49 (151)
Q Consensus 9 ~~~~~l~-~L~~L~l~~~~i~~~-~~~~~~l-----~~L~~l~l~~n~ 49 (151)
+.+..++ +|++|++++|.++.. +..+..+ ++|+.+++++|.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 3445555 667777777666633 3344443 666666666554
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.11 E-value=4.3e-12 Score=92.84 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=24.9
Q ss_pred Cccccccccccccccee-----cChhhhcCCCCCeeeccccc
Q 041851 13 NLEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRSR 49 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n~ 49 (151)
.+++|++|++++|.++. ++..+..+++|+++++++|.
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 46677777777777663 45556667777777777664
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=8.6e-12 Score=91.24 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=56.7
Q ss_pred CChhccCcccccccccccccceecC-----hh-hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851 7 LPDELGNLEALWSLHAIGTAIREVP-----SS-FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI 80 (151)
Q Consensus 7 lp~~~~~l~~L~~L~l~~~~i~~~~-----~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 80 (151)
++..+..+++|++|++++|.++... +. +..+++|+.+++++|..........+ ..+..+++|+.+++++|.+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--HHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH--HHHhhCCCcceEECCCCCC
Confidence 4555666777888888877766321 11 12467778888776642110000122 3333455666666666655
Q ss_pred Cc-cCc----ccC-CCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCC
Q 041851 81 TR-LPE----NIG-QLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 81 ~~-~~~----~~~-~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n 124 (151)
++ .+. .+. ..++|+.|++++|.++. ++..+..+++|+.|++++|
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 43 111 111 12355555555554441 2233334445555555544
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=2.4e-08 Score=70.29 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=53.2
Q ss_pred CCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccC-EEeccCCcccccCCCC----CCCcce
Q 041851 67 LHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLG-RLSLRYCERLQSLSKL----PCKLHE 139 (151)
Q Consensus 67 ~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~----~~~l~~ 139 (151)
+++|+.+++.+|.++.+++ .+..+.+|+.+++..| ++.++. +|.++.+|+ .+++.. .+..++.. +.+|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 5678888888888888654 5777889999999887 665544 677888888 888876 35555532 356666
Q ss_pred Ecc
Q 041851 140 LDA 142 (151)
Q Consensus 140 l~l 142 (151)
+++
T Consensus 302 l~l 304 (329)
T 3sb4_A 302 VLA 304 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=3.6e-10 Score=81.09 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=70.6
Q ss_pred cccccccccccccee--cChhhhcCCCCCeeeccccccCCcccccccc--ccCC-CCCCcccEEEcccCCCCc-----cC
Q 041851 15 EALWSLHAIGTAIRE--VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI--TLSL-DGLHTLTYLNLTDCGITR-----LP 84 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~-~~~~~L~~l~l~~~~l~~-----~~ 84 (151)
++|+.|++++|.++. +..-...+.+|+.+++++|. +.+.... ...+ ...++|+.|++++|.+++ ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC----CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 467777777776652 11112234566777777654 2221110 0111 234567777777777764 33
Q ss_pred cccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCcccc----cCCC---CCCCcceEcccCCc
Q 041851 85 ENIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCERLQ----SLSK---LPCKLHELDAHHCT 146 (151)
Q Consensus 85 ~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~~~~----~~~~---~~~~l~~l~l~~~~ 146 (151)
..+...++|++|++++|.++. +...+...++|+.|++++|.... .+.. ..++|++|++++|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 344566777777777777662 23344555677777777775321 1111 12667777777664
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.81 E-value=1.5e-09 Score=81.62 Aligned_cols=128 Identities=19% Similarity=0.078 Sum_probs=59.8
Q ss_pred CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCC
Q 041851 13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSS 92 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~ 92 (151)
.+++|++|+++++.+..++..+..+++|+.+++....... ...... ..+..+++|+.+++.++....++..+..+++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~--~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI-GMPEKY--MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCT-TCTTSS--SCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccccc-chHHHH--HHhhccccccccCccccchhHHHHHHhhcCC
Confidence 3444444444444444444444444444444444211000 001111 3344555666666665444445555556667
Q ss_pred CCEEeCCCCCCc--cCCcchhccCccCEEeccCCcccccCC---CCCCCcceEccc
Q 041851 93 LEELDLQENNFE--RIPESITQRSKLGRLSLRYCERLQSLS---KLPCKLHELDAH 143 (151)
Q Consensus 93 L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l~l~ 143 (151)
|++|++++|.++ .+...+..+++|+.|+++.+..-..++ ..+++|++|++.
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 777777766654 222234556666666665321111111 123556666666
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=5.4e-10 Score=84.10 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.1
Q ss_pred CcchhccCccCEEeccCCc
Q 041851 107 PESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 107 ~~~~~~~~~L~~l~l~~n~ 125 (151)
|..+..+++|+.|++++|.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC
T ss_pred HHHHhhcCCCcEEecCCCc
Confidence 3334444455555555543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=2.7e-09 Score=76.53 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=80.4
Q ss_pred CcccccccccccccceecC-hhh-----hcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc----
Q 041851 13 NLEALWSLHAIGTAIREVP-SSF-----FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR---- 82 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~-~~~-----~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~---- 82 (151)
.+++|+.|++++|.++... ..+ ...++|+.|++++|.........++ ..+...++|+.|++++|.+++
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM--EGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH--HHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH--HHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 4568999999999987432 222 2357899999998862110001122 344567889999999999985
Q ss_pred -cCcccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCcc
Q 041851 83 -LPENIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCER 126 (151)
Q Consensus 83 -~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~~ 126 (151)
+...+...++|+.|++++|.++. +...+...++|+.|++++|..
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 34566778899999999999872 333455668999999999964
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=9.8e-08 Score=67.14 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=49.3
Q ss_pred CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCC-EEeCCCCCCccCC-cchhcc
Q 041851 37 LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLE-ELDLQENNFERIP-ESITQR 113 (151)
Q Consensus 37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~-~L~l~~n~~~~~~-~~~~~~ 113 (151)
+++|+.+++..|. +....+ ..|..+.+|+.+++..| ++.++ ..+..+.+|+ .+++.. .++.++ .+|.++
T Consensus 225 ~~~L~~l~L~~n~----i~~I~~--~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTN----ATTIPD--FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBC----CCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCC----cceecH--hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 5666677666554 222222 45666666777776665 55543 3555666676 666666 455333 456666
Q ss_pred CccCEEeccCCcccccCC
Q 041851 114 SKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 114 ~~L~~l~l~~n~~~~~~~ 131 (151)
++|+.++++.| .+..++
T Consensus 297 ~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 297 DNLRYVLATGD-KITTLG 313 (329)
T ss_dssp TTEEEEEECSS-CCCEEC
T ss_pred ccCCEEEeCCC-ccCccc
Confidence 67777776554 244444
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=6.4e-09 Score=67.59 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=68.6
Q ss_pred hccCcccccccccccc-ccee-----cChhhhcCCCCCeeeccccccCCccccccc--cccCCCCCCcccEEEcccCCCC
Q 041851 10 ELGNLEALWSLHAIGT-AIRE-----VPSSFFRLNNIDLLSFQRSRGHKQMSLSLP--ITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~-~i~~-----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
.+...+.|++|++++| .+.. +...+...++|++|++++|. +.+... ..+.+...++|+.|++++|.++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~----i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR----SNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC----CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC----CChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3455677888888887 6652 22344455678888888665 322211 0023334456788888888877
Q ss_pred c-----cCcccCCCCCCCEEeC--CCCCCc-c----CCcchhccCccCEEeccCCc
Q 041851 82 R-----LPENIGQLSSLEELDL--QENNFE-R----IPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 82 ~-----~~~~~~~l~~L~~L~l--~~n~~~-~----~~~~~~~~~~L~~l~l~~n~ 125 (151)
+ +...+...+.|++|++ ++|.++ . +...+...++|+.|+++.|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5 3445666677888888 667776 2 23344455678888887764
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.62 E-value=1.3e-08 Score=76.59 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=20.1
Q ss_pred Ccccccccccccccce-ecChhhh-cCCCCCeeecccc
Q 041851 13 NLEALWSLHAIGTAIR-EVPSSFF-RLNNIDLLSFQRS 48 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~-~~~~~~~-~l~~L~~l~l~~n 48 (151)
.+++|++|+++++.++ ..+..+. .+++|+.|++..|
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4556667777666655 2223332 4566666666643
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.60 E-value=3.3e-09 Score=79.79 Aligned_cols=109 Identities=16% Similarity=0.243 Sum_probs=59.8
Q ss_pred ccCccccccccccccc-ceec---C------------hhhhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEE
Q 041851 11 LGNLEALWSLHAIGTA-IREV---P------------SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYL 73 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~-i~~~---~------------~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l 73 (151)
+.++++|+.|+++++. +... | .-...+++|+.+++.++. +.+..+ ..+. .+++|+.|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~----~~~~~~--~~l~~~~~~L~~L 135 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV----VTDDCL--ELIAKSFKNFKVL 135 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB----CCHHHH--HHHHHHCTTCCEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE----EcHHHH--HHHHHhCCCCcEE
Confidence 4567778888887765 2111 1 113457788888888654 332222 2222 35667777
Q ss_pred EcccC-CCCc--cCcccCCCCCCCEEeCCCCCCcc-CCcc----hhccCccCEEeccCCc
Q 041851 74 NLTDC-GITR--LPENIGQLSSLEELDLQENNFER-IPES----ITQRSKLGRLSLRYCE 125 (151)
Q Consensus 74 ~l~~~-~l~~--~~~~~~~l~~L~~L~l~~n~~~~-~~~~----~~~~~~L~~l~l~~n~ 125 (151)
++.+| .+++ ++.....+++|++|++++|.++. .+.. ...+++|+.|+++.|.
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 77766 3443 33333456677777777666442 1111 2244566666666653
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=8e-08 Score=61.79 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=52.9
Q ss_pred cccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCC-Cc-cCCcchhcc----CccCEEeccCCcccccCC----CCCCCc
Q 041851 69 TLTYLNLTDCGITR-LPENIGQLSSLEELDLQENN-FE-RIPESITQR----SKLGRLSLRYCERLQSLS----KLPCKL 137 (151)
Q Consensus 69 ~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~-~~-~~~~~~~~~----~~L~~l~l~~n~~~~~~~----~~~~~l 137 (151)
.|+.+++++|.+++ .-..+..+++|+.|+|++|. ++ .--..+..+ ++|+.|++++|..+++-. ..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57888888887776 33456777888888887774 55 222234432 368888888876554321 124778
Q ss_pred ceEcccCCcccc
Q 041851 138 HELDAHHCTALE 149 (151)
Q Consensus 138 ~~l~l~~~~~l~ 149 (151)
++|++++|++++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888887765
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.3e-07 Score=64.79 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCcccEEEcccCCCCcc---CcccCCCCCCCEEeCCCCCCccCCcchhccC--ccCEEeccCCcccccC
Q 041851 67 LHTLTYLNLTDCGITRL---PENIGQLSSLEELDLQENNFERIPESITQRS--KLGRLSLRYCERLQSL 130 (151)
Q Consensus 67 ~~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~ 130 (151)
++.|+.|++++|.++++ +..+..+++|+.|+|++|.++.+. .+..+. +|+.|++++|+....+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 45566666666666542 233445666666666666665442 223333 5666666666544433
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=9.2e-07 Score=60.61 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=65.6
Q ss_pred cccccccceecCh----hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCCCCCC
Q 041851 20 LHAIGTAIREVPS----SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQLSSL 93 (151)
Q Consensus 20 L~l~~~~i~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~l~~L 93 (151)
++++.|....++. ....+++|+.|++++|+... +. .++ ..+..+++|+.|++++|.++++. ..+..+ +|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~-l~-~l~--~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L 222 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR-LD-DMS--SIVQKAPNLKILNLSGNELKSERELDKIKGL-KL 222 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCC-CG-GGT--THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCC-Cc-cch--hHHhhCCCCCEEECCCCccCCchhhhhcccC-Cc
Confidence 5556664433322 23468899999999997322 11 233 44557889999999999999752 233334 99
Q ss_pred CEEeCCCCCCc-cCCc-------chhccCccCEEe
Q 041851 94 EELDLQENNFE-RIPE-------SITQRSKLGRLS 120 (151)
Q Consensus 94 ~~L~l~~n~~~-~~~~-------~~~~~~~L~~l~ 120 (151)
++|++++|.+. .+|. .+..+++|+.||
T Consensus 223 ~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999999987 4552 356778888887
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=1.5e-07 Score=61.02 Aligned_cols=113 Identities=10% Similarity=0.072 Sum_probs=78.1
Q ss_pred hhhhcCCCCCeeecccc-ccCCccccccccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCcc
Q 041851 32 SSFFRLNNIDLLSFQRS-RGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFER 105 (151)
Q Consensus 32 ~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~ 105 (151)
..+...+.|++|++++| .....-...+. ..+...++|+.|++++|.+++ +.+.+...+.|++|++++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~--~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACA--EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHH--HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHH--HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34556788999999977 52110001122 445567889999999999985 34455667899999999999882
Q ss_pred -----CCcchhccCccCEEec--cCCccccc----CCC---CCCCcceEcccCCc
Q 041851 106 -----IPESITQRSKLGRLSL--RYCERLQS----LSK---LPCKLHELDAHHCT 146 (151)
Q Consensus 106 -----~~~~~~~~~~L~~l~l--~~n~~~~~----~~~---~~~~l~~l~l~~~~ 146 (151)
+...+...++|+.|++ +.|..-.+ +.. ..++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3445667789999999 77753221 221 13779999998764
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3.1e-07 Score=59.05 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCc-cCcccCCC----CCCCEEeCCCCC-Cc-cCCcch
Q 041851 39 NIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITR-LPENIGQL----SSLEELDLQENN-FE-RIPESI 110 (151)
Q Consensus 39 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~-~~~~~~~l----~~L~~L~l~~n~-~~-~~~~~~ 110 (151)
.|+.++++++. +.+..- ..+..+++|+.|++++|. +++ .-..+..+ ++|++|++++|. ++ .--..+
T Consensus 62 ~L~~LDLs~~~----Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC----IMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC----CCGGGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCC----ccHHHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 47777777543 444433 456677788888888875 665 33344443 368888887764 66 223356
Q ss_pred hccCccCEEeccCCccccc
Q 041851 111 TQRSKLGRLSLRYCERLQS 129 (151)
Q Consensus 111 ~~~~~L~~l~l~~n~~~~~ 129 (151)
..+++|+.|++++|+.+++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 6778888888888876554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=2.6e-07 Score=66.09 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=27.7
Q ss_pred CCCCCCEEeCCCCCCc-cCCcchh---ccCccCEEeccCCccccc-----CCC---CCCCcceEcccCC
Q 041851 89 QLSSLEELDLQENNFE-RIPESIT---QRSKLGRLSLRYCERLQS-----LSK---LPCKLHELDAHHC 145 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~-~~~~~~~---~~~~L~~l~l~~n~~~~~-----~~~---~~~~l~~l~l~~~ 145 (151)
.+++|+.|++.+|.+. ..+..+. .+++|++|+++.|. +++ ++. .+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 3566666666666554 2222222 24566666666553 222 221 1355666666655
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.26 E-value=7.8e-06 Score=59.18 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=21.3
Q ss_pred hccCcccccccccccccceecChhhhcCCCCCeeecc
Q 041851 10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQ 46 (151)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~ 46 (151)
.+..|++|+.+++.+|.++.++.......+|+.+.+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4556667777777766666555432224555555554
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=2e-05 Score=57.00 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=60.7
Q ss_pred ccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851 15 EALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL 93 (151)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L 93 (151)
.+|+.+.+..+ ++.++. .|.. .+|+.+.+..+ +..... ..|..+.+|+.+++..|.++.++.......+|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-----l~~I~~--~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-----LEQLKE--DIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-----CCEECS--STTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-----ccEehH--HHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 36777777654 555543 4444 35777777632 222223 56777888888888887777766544445777
Q ss_pred CEEeCCCCCCccCC-cchhccCccCEEeccC
Q 041851 94 EELDLQENNFERIP-ESITQRSKLGRLSLRY 123 (151)
Q Consensus 94 ~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~ 123 (151)
+.+.+..+ ++.++ .++.++++|+.+++..
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 77777644 44333 3556666677776654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=3e-06 Score=60.61 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=66.0
Q ss_pred cccccccccccccce-ecChhhh--cCCCCCeeeccccccC---CccccccccccCC--CCCCcccEEEcccCCCCc-cC
Q 041851 14 LEALWSLHAIGTAIR-EVPSSFF--RLNNIDLLSFQRSRGH---KQMSLSLPITLSL--DGLHTLTYLNLTDCGITR-LP 84 (151)
Q Consensus 14 l~~L~~L~l~~~~i~-~~~~~~~--~l~~L~~l~l~~n~~~---~~~~~~~~~~~~~--~~~~~L~~l~l~~~~l~~-~~ 84 (151)
+++|++|++..+.+. .....+. .+++|+.|++..+... ......+. ..+ ..+++|+.|++.+|.+.+ .+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--PLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--GGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--HHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 344555555444443 1111222 5788888887531100 00000111 122 357899999999999875 32
Q ss_pred ccc---CCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCc
Q 041851 85 ENI---GQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 85 ~~~---~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~ 125 (151)
..+ ..+++|+.|+++.|.++. ++..+..+++|+.|+++.|.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 222 368999999999998873 23344567899999999885
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0008 Score=48.30 Aligned_cols=106 Identities=13% Similarity=0.259 Sum_probs=60.3
Q ss_pred ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCC
Q 041851 11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQ 89 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~ 89 (151)
+..+..|+.+.+.++........+..+.+|+.+.+..+ +..... ..|..+.+|+.+.+.. +++.+. ..+..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-----i~~I~~--~aF~~c~~L~~i~lp~-~v~~I~~~aF~~ 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-----ITELPE--SVFAGCISLKSIDIPE-GITQILDDAFAG 332 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-----CCEECT--TTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCc-----ccccCc--eeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence 34555566665554332222234555666666666522 111112 4566777777777754 355533 35667
Q ss_pred CCCCCEEeCCCCCCccCC-cchhccCccCEEeccCCc
Q 041851 90 LSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYCE 125 (151)
Q Consensus 90 l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~ 125 (151)
+.+|+.+.+..+ ++.+. .++.++.+|+.+++.++.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 777887777544 55443 366777778877777653
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.41 E-value=0.0006 Score=41.49 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=24.4
Q ss_pred cccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCc
Q 041851 69 TLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFE 104 (151)
Q Consensus 69 ~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~ 104 (151)
+++.|+|++|.++.++. .+..+++|+.|+|.+|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 56777777777777554 3456677777777777654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.0027 Score=45.22 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred cCCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccC
Q 041851 62 LSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRY 123 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~ 123 (151)
..|..+.+|+.+.+.++.++.++ ..+..+.+|+.+.+..+ ++.+. .++.++.+|+.+.+..
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 34566677777777666666643 35566677777777544 44333 3566666676666643
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.0033 Score=44.72 Aligned_cols=108 Identities=14% Similarity=0.229 Sum_probs=68.1
Q ss_pred CcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCC
Q 041851 13 NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQL 90 (151)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l 90 (151)
.+.+++.+.+..+ +..++ ..+..+..|+.+.+..+- ..... ..|..+.+++.+.+.. .+..++ ..+..+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v-----~~I~~--~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNV-----TSIGS--FLLQNCTALKTLNFYA-KVKTVPYLLCSGC 285 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTC-----CEECT--TTTTTCTTCCEEEECC-CCSEECTTTTTTC
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCCc-----cEeCc--cccceeehhccccccc-cceeccccccccc
Confidence 3444555555432 33332 345566677777665431 11122 4567778888888754 355544 366788
Q ss_pred CCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851 91 SSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS 131 (151)
Q Consensus 91 ~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~ 131 (151)
.+|+.+.+.++.++.++. ++.++.+|+.+.+..+ ++.++
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~ 325 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQ 325 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEH
Confidence 999999998888886544 7888899999998653 44444
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.11 E-value=0.0047 Score=44.30 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCC
Q 041851 63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYC 124 (151)
Q Consensus 63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n 124 (151)
.+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+++..+ ++.+. .++.++.+|+.+++..+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3445556666665432 44432 34556666676666543 44332 35566666666666543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00021 Score=46.65 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=7.0
Q ss_pred CcccEEEcccCCCC
Q 041851 68 HTLTYLNLTDCGIT 81 (151)
Q Consensus 68 ~~L~~l~l~~~~l~ 81 (151)
++|+.|+++.|.++
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 34555555555554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.62 E-value=0.0038 Score=44.79 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=70.1
Q ss_pred ccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851 11 LGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG 88 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~ 88 (151)
+..+..++.+...... ++ ..+..+.+|+.+.+..+ +..... ..|..+.+|+.+.+.. .++.+. ..+.
T Consensus 272 F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-----i~~I~~--~aF~~c~~L~~i~lp~-~v~~I~~~aF~ 340 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-----VKFIGE--EAFESCTSLVSIDLPY-LVEEIGKRSFR 340 (394)
T ss_dssp TTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-----CCEECT--TTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred cccccccceeccCcee---eccccccccccccccccccc-----cceech--hhhcCCCCCCEEEeCC-cccEEhHHhcc
Confidence 3445555555554432 22 25667888998888743 122223 5788899999999864 477754 4777
Q ss_pred CCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCC
Q 041851 89 QLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYC 124 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n 124 (151)
.+.+|+.+.+..+ ++.+ ..++.++.+|+.+++..+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8999999999876 6644 447889999999998764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.28 E-value=0.0011 Score=43.30 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred cCCCCCeeecccc-ccCCccccc----cccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-
Q 041851 36 RLNNIDLLSFQRS-RGHKQMSLS----LPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFE- 104 (151)
Q Consensus 36 ~l~~L~~l~l~~n-~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~- 104 (151)
.-..|+.|++.++ . +.+. +. +.+..-.+|+.|++++|.+++ +.+.+..=+.|+.|+|+.|.++
T Consensus 39 ~n~~L~~L~L~~nn~----igd~ga~~la--~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 39 DDTDLKEVNINNMKR----VSKERIRSLI--EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TCSSCCEEECTTCCS----SCHHHHHHHH--HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred cCCCccEEECCCCCC----CCHHHHHHHH--HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3467889999864 3 3221 22 445566789999999999986 3334555678999999999987
Q ss_pred c----CCcchhccCccCEEeccCCcc--ccc-----CCC---CCCCcceEcccC
Q 041851 105 R----IPESITQRSKLGRLSLRYCER--LQS-----LSK---LPCKLHELDAHH 144 (151)
Q Consensus 105 ~----~~~~~~~~~~L~~l~l~~n~~--~~~-----~~~---~~~~l~~l~l~~ 144 (151)
. +-.++..-+.|+.|++++|.. ++. +.. .-+.|..|+++.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 2 222444556799999986521 221 111 126677777764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.23 E-value=0.0042 Score=37.68 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=26.7
Q ss_pred ccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851 19 SLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT 81 (151)
Q Consensus 19 ~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 81 (151)
.++-+++.++ .+|..+ -.+++.|++++|. +....+ ..|..+++|+.+++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN----LTALPP--GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC----CSSCCT--TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc----CCccCh--hhhhhccccCEEEecCCCee
Confidence 3444455554 444321 1245666666554 222222 34445556666666666554
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.15 E-value=0.013 Score=41.98 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=68.1
Q ss_pred ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851 11 LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG 88 (151)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~ 88 (151)
+..+.+|+.+.+.. .++.++. .|..+.+|+.+.+..+ +..... ..|..+.+|+.+.+.. .++.+. ..+.
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-----v~~I~~--~aF~~C~~L~~i~ip~-sv~~I~~~aF~ 354 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-----ITQILD--DAFAGCEQLERIAIPS-SVTKIPESAFS 354 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-----CCEECT--TTTTTCTTCCEEEECT-TCCBCCGGGGT
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-----ccEehH--hHhhCCCCCCEEEECc-ccCEEhHhHhh
Confidence 45778888888864 5666654 6888899999999754 222223 6788999999999964 477754 4788
Q ss_pred CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851 89 QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC 124 (151)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 124 (151)
.+.+|+.+++.++... . ..+....+|+.+.+..+
T Consensus 355 ~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred CCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 8999999999887432 1 23455667777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.49 E-value=23 Score=19.92 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=21.3
Q ss_pred cCCCCCCcccEEEcccCCCCcc-CcccCCCCCCCEEeCCC
Q 041851 62 LSLDGLHTLTYLNLTDCGITRL-PENIGQLSSLEELDLQE 100 (151)
Q Consensus 62 ~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~ 100 (151)
..|..+.+|+.+.+-.+ ++.+ ...+..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 45666777777666442 3332 23455666666666644
Done!