BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041854
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9NEI9|SYC_ACHLI Cysteine--tRNA ligase OS=Acholeplasma laidlawii (strain PG-8A)
GN=cysS PE=3 SV=1
Length = 434
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 20 KHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRID 79
KHD H +K+ + VG D A+ + K + ++ +L P Y L ++A R
Sbjct: 243 KHDHHLAKYWMHVGRLDLANEKMSKSLGNDIKLKDLVQVYNPNAYRLMLLAHHYRAPIQF 302
Query: 80 SDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNG 115
SDD++ Y D + L + LNN NG
Sbjct: 303 SDDLIEQYQKAYDKISYTLNKW-HFHMILNNINENG 337
>sp|B4S9K0|UVRC_PROA2 UvrABC system protein C OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=uvrC PE=3 SV=1
Length = 616
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 14/59 (23%)
Query: 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLN 109
++ NLP+ PGVY+ ++ ++Y+G+A ++R+R++ Y R G H++
Sbjct: 15 KLSNLPTC--PGVYQF------------KNNQGTIIYVGKAKNIRSRVRSYFREGPHIS 59
>sp|Q10Z79|UVRC_TRIEI UvrABC system protein C OS=Trichodesmium erythraeum (strain IMS101)
GN=uvrC PE=3 SV=1
Length = 622
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG 105
R+ +P T PGVY + R R+DRI +Y+G++ +R R++ Y R G
Sbjct: 18 RLKEIPQT--PGVYLM-----RDRSDRI-------LYIGKSKKLRNRVRSYFRDG 58
>sp|O73770|DGCR6_CHICK Protein DGCR6 OS=Gallus gallus GN=DGCR6 PE=2 SV=1
Length = 200
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 44 KEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQA--DSVRTRLQCY 101
KE R HNLP E+ V R R ++ D+ +V+ L Q D T L+
Sbjct: 103 KEAQQCCRPHNLPLLRAAQQREMEAVEQRIREEQRMMDEKIVLELDQKVIDQQST-LEKA 161
Query: 102 GRSGAHLNNNPSN 114
G SG ++ NP
Sbjct: 162 GVSGFYITTNPQE 174
>sp|Q0ARM2|UVRC_MARMM UvrABC system protein C OS=Maricaulis maris (strain MCS10) GN=uvrC
PE=3 SV=1
Length = 633
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 25/88 (28%)
Query: 22 DAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSD 81
DA + + L GA ADY V NLP PGVY R+ +
Sbjct: 13 DASAAPAQSLAGAKLIADY-----------VRNLPPK--PGVY------------RMFGE 47
Query: 82 DVVVVYLGQADSVRTRLQCYGRSGAHLN 109
D V+Y+G+A +++ R+ Y H N
Sbjct: 48 DGAVLYVGKARNLKNRVSNYANGRGHSN 75
>sp|Q9PQS9|KGUA_UREPA Guanylate kinase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gmk PE=3 SV=1
Length = 191
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 21 HDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDS 80
+D F K + +WA+++ K G R V L + E+ +V + D +
Sbjct: 57 NDEEFKKAILNNELIEWAEFVGNKYGTPRTIVEKLRDEGKNVILEIEVVGALKVLDLYKN 116
Query: 81 DDVVVVYL--GQADSVRTRL 98
DD++ ++L D ++ RL
Sbjct: 117 DDLISIFLLPPSIDELKKRL 136
>sp|A0RM14|RL2_CAMFF 50S ribosomal protein L2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rplB PE=3 SV=1
Length = 276
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 31 LVGASDWADYLLGKEGADRYR 51
+VG DWA+ +GK G +RYR
Sbjct: 195 VVGNEDWANVTIGKAGRNRYR 215
>sp|A7H108|RL2_CAMC5 50S ribosomal protein L2 OS=Campylobacter curvus (strain 525.92)
GN=rplB PE=3 SV=1
Length = 277
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 31 LVGASDWADYLLGKEGADRYR 51
+VG DWA+ +GK G +RYR
Sbjct: 196 VVGNEDWANITIGKAGRNRYR 216
>sp|A7ZG09|RL2_CAMC1 50S ribosomal protein L2 OS=Campylobacter concisus (strain 13826)
GN=rplB PE=3 SV=1
Length = 277
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 31 LVGASDWADYLLGKEGADRYR 51
+VG DWA+ +GK G +RYR
Sbjct: 196 VVGNEDWANITIGKAGRNRYR 216
>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1
Length = 855
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 57 STSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNP 112
ST G + EL VA S +D + DD VV Y S+ T Y + +H+ P
Sbjct: 45 STEGKQMMELQTVACSSYSDSEEDDDAVVRY-----SMDTSEDLYTQQASHIQPEP 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,828,163
Number of Sequences: 539616
Number of extensions: 2429544
Number of successful extensions: 4398
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4393
Number of HSP's gapped (non-prelim): 14
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)