Query 041854
Match_columns 144
No_of_seqs 28 out of 30
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 11:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10545 nucleotide excision r 95.5 0.011 2.5E-07 50.3 3.1 40 52-104 28-67 (286)
2 smart00465 GIYc GIY-YIG type n 94.2 0.067 1.5E-06 34.2 3.4 46 84-136 13-58 (84)
3 PRK07883 hypothetical protein; 93.4 0.047 1E-06 49.6 2.0 43 49-105 208-250 (557)
4 PRK14668 uvrC excinuclease ABC 93.2 0.063 1.4E-06 49.5 2.6 38 51-103 9-46 (577)
5 COG0322 UvrC Nuclease subunit 93.0 0.066 1.4E-06 49.8 2.4 42 52-107 9-50 (581)
6 PHA02598 denA endonuclease II; 92.7 0.085 1.8E-06 41.9 2.3 23 83-105 43-65 (138)
7 PRK00558 uvrC excinuclease ABC 92.4 0.068 1.5E-06 49.3 1.6 41 51-105 7-47 (598)
8 PF01541 GIY-YIG: GIY-YIG cata 92.3 0.081 1.8E-06 33.9 1.5 18 84-101 13-30 (80)
9 PRK14666 uvrC excinuclease ABC 91.7 0.1 2.2E-06 49.8 2.0 39 52-104 6-44 (694)
10 PRK12306 uvrC excinuclease ABC 91.7 0.13 2.9E-06 47.0 2.7 39 52-104 4-42 (519)
11 PRK14669 uvrC excinuclease ABC 91.6 0.1 2.2E-06 48.8 1.8 42 51-106 6-47 (624)
12 PRK14667 uvrC excinuclease ABC 91.5 0.16 3.5E-06 47.0 2.9 38 52-104 10-47 (567)
13 TIGR00194 uvrC excinuclease AB 91.4 0.12 2.5E-06 47.8 2.1 39 52-104 5-43 (574)
14 PRK14671 uvrC excinuclease ABC 91.4 0.12 2.5E-06 48.2 2.0 42 51-106 15-56 (621)
15 PRK14672 uvrC excinuclease ABC 90.9 0.13 2.7E-06 49.2 1.8 40 51-104 14-53 (691)
16 PRK14670 uvrC excinuclease ABC 83.2 0.75 1.6E-05 42.8 2.0 21 84-104 7-27 (574)
17 PF13072 DUF3936: Protein of u 62.8 5.3 0.00011 25.8 1.5 21 85-105 10-30 (38)
18 TIGR01453 grpIintron_endo grou 53.4 7.9 0.00017 31.1 1.4 19 85-103 14-32 (214)
19 cd01202 FRS2 Fibroblast growth 37.7 14 0.00029 28.3 0.5 61 48-119 6-74 (102)
20 COG3938 Proline racemase [Amin 35.7 17 0.00038 32.7 0.9 32 41-78 133-164 (341)
21 PF00271 Helicase_C: Helicase 27.1 73 0.0016 20.1 2.5 22 84-105 54-75 (78)
22 TIGR03817 DECH_helic helicase/ 26.5 53 0.0012 31.2 2.5 23 85-107 351-373 (742)
23 PF03129 HGTP_anticodon: Antic 25.8 91 0.002 20.6 2.9 21 82-102 1-29 (94)
24 PF12559 Inhibitor_I10: Serine 25.6 26 0.00057 24.1 0.3 11 30-40 46-56 (56)
25 PRK06755 hypothetical protein; 23.7 63 0.0014 26.2 2.2 37 68-104 44-90 (209)
26 PRK13767 ATP-dependent helicas 22.8 66 0.0014 31.1 2.4 26 84-109 361-386 (876)
27 KOG1027 Serine/threonine prote 22.8 54 0.0012 33.0 1.9 67 75-143 629-717 (903)
28 PF00690 Cation_ATPase_N: Cati 22.6 68 0.0015 20.8 1.8 31 91-125 23-53 (69)
29 TIGR03769 P_ac_wall_RPT actino 22.2 1.1E+02 0.0024 19.3 2.6 14 59-72 10-23 (41)
30 cd01203 DOK_PTB Downstream of 22.1 32 0.0007 26.1 0.2 66 48-119 2-76 (104)
31 cd00824 PTBI IRS-like phosphot 21.7 23 0.0005 26.4 -0.6 24 96-119 49-76 (104)
32 PRK00329 GIY-YIG nuclease supe 21.6 57 0.0012 23.2 1.4 18 85-102 18-35 (86)
33 COG1201 Lhr Lhr-like helicases 21.6 89 0.0019 30.9 3.1 38 64-110 314-351 (814)
34 smart00831 Cation_ATPase_N Cat 21.5 70 0.0015 20.1 1.7 27 91-121 13-39 (64)
35 TIGR01557 myb_SHAQKYF myb-like 21.4 60 0.0013 21.7 1.4 12 90-101 42-53 (57)
36 PRK01297 ATP-dependent RNA hel 20.6 1.1E+02 0.0023 26.7 3.0 24 85-108 407-430 (475)
No 1
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=95.53 E-value=0.011 Score=50.35 Aligned_cols=40 Identities=30% Similarity=0.615 Sum_probs=29.8
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
+.+||. .||||=.= +.++-+++|+|+|.|+|+|+.+|=++
T Consensus 28 l~~LP~--~PGVYlf~-----------d~~g~~~LYVGKAknLR~RV~syF~~ 67 (286)
T PRK10545 28 LEDLPK--LPGVYLFH-----------GESDTMPLYIGKSVNIRSRVLSHLRT 67 (286)
T ss_pred HHhCCC--CCeEEEEE-----------cCCCCEEEEEechHhHHHHHHHHcCc
Confidence 567775 58888541 12355789999999999999999753
No 2
>smart00465 GIYc GIY-YIG type nucleases (URI domain).
Probab=94.21 E-value=0.067 Score=34.24 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=33.0
Q ss_pred EEEeccchhhHHHHHHhhCCCCCCCCCCCCCCCCchHHHhhccceeEEEeccC
Q 041854 84 VVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPV 136 (144)
Q Consensus 84 vvVYlGqaenVR~RLq~YGr~GaHL~~~~~~g~~LF~eiFs~g~si~~RwA~m 136 (144)
-++|+|++.|+++|+++|-.... +...+-..+...|.++.+.++..
T Consensus 13 ~~~YVG~t~nl~~R~~~h~~~~~-------~~~~~~~~~~~~~~~f~~~~~~~ 58 (84)
T smart00465 13 GKLYVGKAKNLRNRLKRHFSGSR-------KGRLLIDALLKYGGNFEFIILES 58 (84)
T ss_pred CEEEEEEccCHHHHHHHHHhCCC-------CChHHHHHHHHhcCCeEEEEeec
Confidence 47899999999999999875544 23456666677776655555543
No 3
>PRK07883 hypothetical protein; Validated
Probab=93.38 E-value=0.047 Score=49.63 Aligned_cols=43 Identities=33% Similarity=0.590 Sum_probs=31.7
Q ss_pred cceeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCC
Q 041854 49 RYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG 105 (144)
Q Consensus 49 RYRv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~G 105 (144)
|=.+.+||. .||+|=.= +.++ -|+|+|+|-|+|+|+.+|=+..
T Consensus 208 ~~~~~~lP~--~PGVY~~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~~ 250 (557)
T PRK07883 208 RHLADGLPH--APGVYLFR-----------GPSG-EVLYVGTAVNLRRRVRSYFTAA 250 (557)
T ss_pred hHHHhhCCC--CceEEEEE-----------CCCC-cEEEeehhhhHHHHHHHHcCCC
Confidence 445677875 58998651 1122 3899999999999999998754
No 4
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=93.23 E-value=0.063 Score=49.54 Aligned_cols=38 Identities=37% Similarity=0.760 Sum_probs=29.5
Q ss_pred eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCC
Q 041854 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGR 103 (144)
Q Consensus 51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr 103 (144)
.+.+||. -||+|=.- + .+ -|+|+|.|-|+|+|+.+|=+
T Consensus 9 k~~~LP~--~PGVYl~~-----------d-~g-~viYVGKAknLr~RV~sYF~ 46 (577)
T PRK14668 9 RAAELPR--EPGVYQFV-----------A-GG-TVLYVGKAVDLRDRVRSYAD 46 (577)
T ss_pred HHHhCCC--CCEEEEEc-----------C-CC-eEEEeeCcHhHHHHHHHHcC
Confidence 4678886 59999752 1 23 47999999999999999953
No 5
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=92.99 E-value=0.066 Score=49.84 Aligned_cols=42 Identities=38% Similarity=0.751 Sum_probs=32.3
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAH 107 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaH 107 (144)
+.+||. .||+|-.- + .+=.|+|+|.|-|+|+|+++|-+...+
T Consensus 9 l~~lP~--~PGvY~~~-----------d-~~g~VlYVGKAknLr~Rv~sYF~~~~~ 50 (581)
T COG0322 9 LKNLPH--SPGVYLMK-----------D-ENGTVLYVGKAKNLRKRVSSYFRGRLD 50 (581)
T ss_pred HHhCCC--CCeeEEEE-----------C-CCCCEEEEeehhhHHHHHHHhhcCCCc
Confidence 667776 48888542 1 123689999999999999999987666
No 6
>PHA02598 denA endonuclease II; Provisional
Probab=92.69 E-value=0.085 Score=41.87 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=19.8
Q ss_pred eEEEeccchhhHHHHHHhhCCCC
Q 041854 83 VVVVYLGQADSVRTRLQCYGRSG 105 (144)
Q Consensus 83 VvvVYlGqaenVR~RLq~YGr~G 105 (144)
=.|+|+|+|.|+|+|+.+|=+++
T Consensus 43 ~~viYVGKAknLkkRv~sYf~~~ 65 (138)
T PHA02598 43 DELVYIGKTKNLRKRIDYYRNSK 65 (138)
T ss_pred CeEEEEeehhhHHHHHHHHhCcc
Confidence 37899999999999999995544
No 7
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=92.41 E-value=0.068 Score=49.27 Aligned_cols=41 Identities=34% Similarity=0.843 Sum_probs=30.1
Q ss_pred eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCC
Q 041854 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG 105 (144)
Q Consensus 51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~G 105 (144)
.+.+||.. ||+|=.= +.++ -|+|+|.|-|+|+|+.+|=+..
T Consensus 7 ~l~~lP~~--PGVY~~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~~ 47 (598)
T PRK00558 7 KLKTLPDS--PGVYRMK-----------DANG-TVIYVGKAKNLKNRVRSYFRKS 47 (598)
T ss_pred HHhhCCCC--CeEEEEE-----------CCCC-CEEEecCchhHHHHHHhhCCCC
Confidence 35678774 8998651 1122 3699999999999999998753
No 8
>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....
Probab=92.28 E-value=0.081 Score=33.92 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=16.0
Q ss_pred EEEeccchhhHHHHHHhh
Q 041854 84 VVVYLGQADSVRTRLQCY 101 (144)
Q Consensus 84 vvVYlGqaenVR~RLq~Y 101 (144)
-.+|+|++.|++.||.++
T Consensus 13 ~~~YIG~t~nl~~R~~~H 30 (80)
T PF01541_consen 13 KKIYIGSTKNLKKRLNEH 30 (80)
T ss_dssp EEEEEEEESSHHHHHHHH
T ss_pred CEEEEEEECCHHHHHHHH
Confidence 356999999999999887
No 9
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=91.74 E-value=0.1 Score=49.82 Aligned_cols=39 Identities=33% Similarity=0.653 Sum_probs=29.2
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
+.+||. -||+|=.= +. +=-|+|+|+|-|+|+|+.+|=+.
T Consensus 6 l~~LP~--~PGVYlfk-----------D~-~G~VIYVGKAKNLR~RV~SYF~~ 44 (694)
T PRK14666 6 LSTIPL--TPGVYLYK-----------DE-AGRIIYVGKARHLRRRVASYFRD 44 (694)
T ss_pred HhhCCC--CCeEEEEE-----------CC-CCCEEEeeCcHhHHHHHHHHcCC
Confidence 667885 48998651 11 22369999999999999999763
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=91.70 E-value=0.13 Score=47.04 Aligned_cols=39 Identities=26% Similarity=0.685 Sum_probs=29.3
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
+.+||. .||+|-.= +. +=-|+|+|.|-|+|+|+.+|=+.
T Consensus 4 l~~lP~--~PGVYl~~-----------d~-~g~vIYVGKAknLr~RV~sYF~~ 42 (519)
T PRK12306 4 LSTIPT--NPGCYLYK-----------DE-EGTIIYVGKAKNLKKRVSSYFQK 42 (519)
T ss_pred hhHCCC--CCeEEEEE-----------CC-CCCEEEeccchhHHHHHHHhCCC
Confidence 567886 48998651 11 22369999999999999999774
No 11
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=91.60 E-value=0.1 Score=48.84 Aligned_cols=42 Identities=31% Similarity=0.687 Sum_probs=31.1
Q ss_pred eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCC
Q 041854 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGA 106 (144)
Q Consensus 51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~Ga 106 (144)
.+.+||. -||+|=.= +. +=-|+|+|.|-|+|+|+.+|=+...
T Consensus 6 kl~~lP~--~PGVYl~~-----------d~-~g~viYVGKAknLr~RV~sYF~~~~ 47 (624)
T PRK14669 6 KIRTLPT--SPGVYLYK-----------NA-GGEVIYVGKAKNLRSRVRSYFSEDK 47 (624)
T ss_pred HHHhCCC--CCeEEEEE-----------CC-CCCEEEeeCchhHHHHHHHHhccCc
Confidence 3677885 59998661 11 2237999999999999999987553
No 12
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.46 E-value=0.16 Score=46.99 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=30.2
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
+.+||. .||+|-.= . +=-|+|+|.|-|+|+|+.+|=+.
T Consensus 10 l~~lP~--~PGVYl~~-~------------~g~viYVGKAknLr~RV~sYF~~ 47 (567)
T PRK14667 10 IEKAPE--EPGVYLFK-K------------KKRYIYIGKAKNIKNRLLQHYKQ 47 (567)
T ss_pred HHhCCC--CCeEEEEe-c------------CCeEEEeeCcHhHHHHHHHHcCC
Confidence 567885 59999663 1 23589999999999999999874
No 13
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.44 E-value=0.12 Score=47.79 Aligned_cols=39 Identities=36% Similarity=0.761 Sum_probs=29.1
Q ss_pred eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
+.+||. .||+|=.= +..+ -|+|+|.|-|+|+|+.+|=+.
T Consensus 5 l~~lP~--~PGVYl~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~ 43 (574)
T TIGR00194 5 LKNLPD--KPGCYLMK-----------DRNG-QVLYVGKAKNLKKRVSSYFRE 43 (574)
T ss_pred HhhCCC--CCeEEEEE-----------CCCC-CEEEEecHHHHHHHHHHhcCC
Confidence 567775 58998641 2222 259999999999999999875
No 14
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=91.41 E-value=0.12 Score=48.16 Aligned_cols=42 Identities=33% Similarity=0.780 Sum_probs=31.2
Q ss_pred eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCC
Q 041854 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGA 106 (144)
Q Consensus 51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~Ga 106 (144)
.+.+||. .||+|=.= +.++ -|+|+|.|-|+|+|+.+|=+...
T Consensus 15 ~l~~lP~--~PGVYl~~-----------d~~g-~viYVGKAknLr~RV~sYF~~~~ 56 (621)
T PRK14671 15 KLASLPT--SPGVYQFK-----------NAAG-RVIYVGKAKNLRNRVRSYFRNSR 56 (621)
T ss_pred HHHhCCC--CCeEEEEE-----------CCCC-CEEEeecchhHHHHHHHHcCCCC
Confidence 4778886 59998651 1112 35999999999999999987544
No 15
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=90.91 E-value=0.13 Score=49.21 Aligned_cols=40 Identities=43% Similarity=0.620 Sum_probs=30.2
Q ss_pred eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854 51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~ 104 (144)
.+.+||. .||+|=.= -.+=-|+|+|.|-|+|+|+.+|=+.
T Consensus 14 ~~~~LP~--~PGVYlfk------------d~~G~VLYVGKAKNLR~RV~SYF~~ 53 (691)
T PRK14672 14 QALSAPS--TSGVYLWK------------DVHGVVIYVGKAKSLRTRLTSYFRC 53 (691)
T ss_pred HHHhCCC--CCeEEEEE------------CCCCCEEEeeCcHHHHHHHHHHcCC
Confidence 3567885 59998651 1123479999999999999999874
No 16
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=83.17 E-value=0.75 Score=42.81 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEeccchhhHHHHHHhhCCC
Q 041854 84 VVVYLGQADSVRTRLQCYGRS 104 (144)
Q Consensus 84 vvVYlGqaenVR~RLq~YGr~ 104 (144)
-|+|+|.|-|+|+|+.+|=+.
T Consensus 7 ~vIYVGKAknLr~RV~sYF~~ 27 (574)
T PRK14670 7 KILYIGKAKNLRSRVKNYFLE 27 (574)
T ss_pred CEEEeeCcHhHHHHHHHHcCC
Confidence 378999999999999999874
No 17
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=62.76 E-value=5.3 Score=25.84 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=17.7
Q ss_pred EEeccchhhHHHHHHhhCCCC
Q 041854 85 VVYLGQADSVRTRLQCYGRSG 105 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YGr~G 105 (144)
++-+|+|=.||..|++|++..
T Consensus 10 i~lvGKAWeIr~~Lkey~k~~ 30 (38)
T PF13072_consen 10 IILVGKAWEIRAKLKEYGKQF 30 (38)
T ss_pred EEEEehHHHHHHHHHHHHHhh
Confidence 345799999999999999853
No 18
>TIGR01453 grpIintron_endo group I intron endonuclease. This model represents one subfamily of endonucleases containing the endo/excinuclease amino terminal domain, Pfam:PF01541 at its amino end. A distinct subfamily includes excinuclease abc subunit c (uvrC). Members of pfam01541 are often termed GIY-YIG endonucleases after conserved motifs near the amino end. This subfamily in this model is found in open reading frames of group I introns in both phage and mitochondria. The closely related endonucleases of phage T4: segA, segB, segC, segD and segE, score below the trusted cutoff for the family.
Probab=53.36 E-value=7.9 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.8
Q ss_pred EEeccchhhHHHHHHhhCC
Q 041854 85 VVYLGQADSVRTRLQCYGR 103 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YGr 103 (144)
.+|+|++.|+..||.+|=.
T Consensus 14 k~YIGss~nl~~R~~~h~~ 32 (214)
T TIGR01453 14 KIYVGSSVNLEKRLKEHLK 32 (214)
T ss_pred cEEEEeccCHHHHHHHHHH
Confidence 4799999999999999864
No 19
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=37.73 E-value=14 Score=28.25 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=34.2
Q ss_pred ccceeecCCCC---CCCceeeeceeccc-CCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCCCCCC----CCCCCCCch
Q 041854 48 DRYRVHNLPST---SGPGVYELGIVASR-SRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNN----NPSNGSGCF 119 (144)
Q Consensus 48 ~RYRv~NLP~~---s~pGlYELGV~~~~-~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaHL~~----~~~~g~~LF 119 (144)
.+|+|-||-+. -++|+-|+....-. .+.+ . +. +++ =-.-|++||+...-.-. -+.+|+|+|
T Consensus 6 ~~F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~---~-~~-~~W------Pl~~LRRYG~d~~~FsFEAGRRC~tGeG~f 74 (102)
T cd01202 6 NSFRVINVDDDGNELGSGWLELTRTELTLYISG---K-EP-VVW------PLLCLRRYGYNSDLFSFESGRRCQTGEGIF 74 (102)
T ss_pred cEEEEEEECCCCCeeeeEEEEecceEEEEEcCC---C-CE-EEc------cHHHhHhhccCCCEEEEEccCcCCCCCCEE
Confidence 48899888763 24555555444211 1111 1 11 111 13569999999744332 577899998
No 20
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=35.74 E-value=17 Score=32.72 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=23.4
Q ss_pred hcccCCcccceeecCCCCCCCceeeeceecccCCCCCC
Q 041854 41 LLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRI 78 (144)
Q Consensus 41 ~~GKeg~~RYRv~NLP~~s~pGlYELGV~~~~~~~g~l 78 (144)
+.|| +.|-++.|+|+- +|+|++.+...++|+|
T Consensus 133 rdGk--~E~V~l~NvPsf----~~~ld~~vevpglG~l 164 (341)
T COG3938 133 RDGK--VERVRLRNVPSF----LHRLDASVEVPGLGRL 164 (341)
T ss_pred cCCc--EEEEEEEcchhh----HhhcCCeEecCCcceE
Confidence 4577 789999999996 5666666666666644
No 21
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=27.10 E-value=73 Score=20.12 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=18.7
Q ss_pred EEEeccchhhHHHHHHhhCCCC
Q 041854 84 VVVYLGQADSVRTRLQCYGRSG 105 (144)
Q Consensus 84 vvVYlGqaenVR~RLq~YGr~G 105 (144)
+|+..+..-|...-.|..||.|
T Consensus 54 ~vi~~~~~~~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 54 HVIFYDPPWSPEEYIQRIGRAG 75 (78)
T ss_dssp EEEESSSESSHHHHHHHHTTSS
T ss_pred cccccccCCCHHHHHHHhhcCC
Confidence 4577788999999999999976
No 22
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=26.52 E-value=53 Score=31.18 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.1
Q ss_pred EEeccchhhHHHHHHhhCCCCCC
Q 041854 85 VVYLGQADSVRTRLQCYGRSGAH 107 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YGr~GaH 107 (144)
||-.|-+.++-+=+|+-||+|=.
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~ 373 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRR 373 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCC
Confidence 44558999999999999999943
No 23
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=25.76 E-value=91 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=17.2
Q ss_pred CeEEEeccc--------hhhHHHHHHhhC
Q 041854 82 DVVVVYLGQ--------ADSVRTRLQCYG 102 (144)
Q Consensus 82 dVvvVYlGq--------aenVR~RLq~YG 102 (144)
+|+|+.+|. |.+|.++|++.|
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~g 29 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAG 29 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCC
Confidence 478888888 678888998887
No 24
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=25.55 E-value=26 Score=24.09 Aligned_cols=11 Identities=45% Similarity=0.897 Sum_probs=3.4
Q ss_pred EeecCCChhhh
Q 041854 30 ILVGASDWADY 40 (144)
Q Consensus 30 ILigpsDWeD~ 40 (144)
-|==||||+|.
T Consensus 46 TlKyPSD~ee~ 56 (56)
T PF12559_consen 46 TLKYPSDWEEY 56 (56)
T ss_dssp ---SS-SS---
T ss_pred ceeCCCccccC
Confidence 34559999874
No 25
>PRK06755 hypothetical protein; Validated
Probab=23.72 E-value=63 Score=26.22 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred eecccCCCCCCCCCCeEEEecc-c---------hhhHHHHHHhhCCC
Q 041854 68 IVASRSRTDRIDSDDVVVVYLG-Q---------ADSVRTRLQCYGRS 104 (144)
Q Consensus 68 V~~~~~~~g~l~~~dVvvVYlG-q---------aenVR~RLq~YGr~ 104 (144)
|+++....|.|+|+|+++|-+- + +-..+-+++=|=++
T Consensus 44 ITpSG~~k~~L~~eDiv~vd~~g~~~~~~~~kPSsE~~~H~~IY~~~ 90 (209)
T PRK06755 44 VNVEGRDKGLFSEEDFIVVNCMCEPVFENEEKPAAESFMHADIYKKS 90 (209)
T ss_pred EeCCCCCcccCCcccEEEEeCCCCCccCCCCCcCccHHHHHHHHhcC
Confidence 4555666789999999999752 2 12345566667443
No 26
>PRK13767 ATP-dependent helicase; Provisional
Probab=22.77 E-value=66 Score=31.06 Aligned_cols=26 Identities=46% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEeccchhhHHHHHHhhCCCCCCCC
Q 041854 84 VVVYLGQADSVRTRLQCYGRSGAHLN 109 (144)
Q Consensus 84 vvVYlGqaenVR~RLq~YGr~GaHL~ 109 (144)
+||-+|.+.++.+=+|+-||+|=+.+
T Consensus 361 ~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 361 LVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred EEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 34457899999999999999986554
No 27
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=22.75 E-value=54 Score=33.02 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=43.1
Q ss_pred CCCCCCCCeEEEeccchhhHHHHHHhhCCCCCCCCCCC--------CCCCCc--------------hHHHhhccceeEEE
Q 041854 75 TDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNP--------SNGSGC--------------FDDIFSRRHAIAYR 132 (144)
Q Consensus 75 ~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaHL~~~~--------~~g~~L--------------F~eiFs~g~si~~R 132 (144)
++-|+|++|+++-=-+...+|+.|-.+|-+= +|++.. .+|..= =-||||-| ||+|=
T Consensus 629 HRDLkPQNILI~~~~~~~~~ra~iSDfglsK-kl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslG-CvfyY 706 (903)
T KOG1027|consen 629 HRDLKPQNILISVPSADGTLRAKISDFGLSK-KLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLG-CVFYY 706 (903)
T ss_pred cccCCCceEEEEccCCCcceeEEeccccccc-ccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcC-ceEEE
Confidence 5579999999987666677888888887652 333311 011111 12899999 56665
Q ss_pred eccCCCcCCCC
Q 041854 133 RAPVGVHPFEN 143 (144)
Q Consensus 133 wA~m~~~~~~~ 143 (144)
.-.-+.+||..
T Consensus 707 vltgG~HpFGd 717 (903)
T KOG1027|consen 707 VLTGGSHPFGD 717 (903)
T ss_pred EecCCccCCCc
Confidence 55556999973
No 28
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.56 E-value=68 Score=20.79 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=21.3
Q ss_pred hhhHHHHHHhhCCCCCCCCCCCCCCCCchHHHhhc
Q 041854 91 ADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSR 125 (144)
Q Consensus 91 aenVR~RLq~YGr~GaHL~~~~~~g~~LF~eiFs~ 125 (144)
.+.|..|++.||.+--- ..+..++|+-++.+
T Consensus 23 ~~ev~~r~~~~G~N~l~----~~~~~s~~~~~~~~ 53 (69)
T PF00690_consen 23 SEEVEERRKKYGPNELP----EPKKKSLWRIFLKQ 53 (69)
T ss_dssp HHHHHHHHHHHSSSSTT----TTTSSSHHHHHHHH
T ss_pred HHHHHHHHHhccccccc----ccccCcHHHHHHHH
Confidence 47899999999987432 33456777666543
No 29
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=22.25 E-value=1.1e+02 Score=19.28 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=11.5
Q ss_pred CCCceeeeceeccc
Q 041854 59 SGPGVYELGIVASR 72 (144)
Q Consensus 59 s~pGlYELGV~~~~ 72 (144)
+-||.|.|.+....
T Consensus 10 T~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 10 TKPGTYTLTVQATA 23 (41)
T ss_pred CCCeEEEEEEEEEE
Confidence 35999999998864
No 30
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=22.13 E-value=32 Score=26.14 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=37.6
Q ss_pred ccceeecCCCCC-----CCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCCCCCC----CCCCCCCc
Q 041854 48 DRYRVHNLPSTS-----GPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNN----NPSNGSGC 118 (144)
Q Consensus 48 ~RYRv~NLP~~s-----~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaHL~~----~~~~g~~L 118 (144)
+.|.|.=.|+.+ -+|-|.|=|+...=-+-..++..+++++= -.-|++||+...-+-. .+.+|+|+
T Consensus 2 ~~F~V~v~~Teaserc~L~G~y~L~v~~~~l~L~d~~~~~~l~~WP------~~~LRryG~d~~~FsFEAGRrC~tGeG~ 75 (104)
T cd01203 2 GEFPVTLQPTEASERCCLPGSYMLRMGPTELQLKSEDLGATLYMWP------YRFLRKYGRDKGKFSFEAGRRCTSGEGV 75 (104)
T ss_pred CEEEEEEEEChhHHhcCCceeEEEEEcCCEEEEEcCCCCcEEEEee------hHhhhhhcccCCEEEEEecCcCCCCCcE
Confidence 345555555532 38899988885431111112234444442 3468999997433322 57789999
Q ss_pred h
Q 041854 119 F 119 (144)
Q Consensus 119 F 119 (144)
|
T Consensus 76 f 76 (104)
T cd01203 76 F 76 (104)
T ss_pred E
Confidence 8
No 31
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=21.67 E-value=23 Score=26.37 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=16.9
Q ss_pred HHHHhhCCCCCCCCC----CCCCCCCch
Q 041854 96 TRLQCYGRSGAHLNN----NPSNGSGCF 119 (144)
Q Consensus 96 ~RLq~YGr~GaHL~~----~~~~g~~LF 119 (144)
.-|++||+...=.-. ++.+|+|+|
T Consensus 49 ~~lRRyG~~~~~FsfEaGRrc~tG~G~f 76 (104)
T cd00824 49 MFLRRYGYDSNLFSFEAGRRCVTGEGIF 76 (104)
T ss_pred HHeeecccCCCEEEEEccCcCCCCCCEE
Confidence 458999998632221 677899988
No 32
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=21.62 E-value=57 Score=23.16 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=16.2
Q ss_pred EEeccchhhHHHHHHhhC
Q 041854 85 VVYLGQADSVRTRLQCYG 102 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YG 102 (144)
..|+|.+.|+-.||.+.-
T Consensus 18 ~~Y~G~T~dl~~Rl~qH~ 35 (86)
T PRK00329 18 SLYTGITTDVERRFAQHQ 35 (86)
T ss_pred CEEEEEcCCHHHHHHHHH
Confidence 589999999999999873
No 33
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=21.60 E-value=89 Score=30.93 Aligned_cols=38 Identities=39% Similarity=0.496 Sum_probs=30.7
Q ss_pred eeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCCCCCC
Q 041854 64 YELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNN 110 (144)
Q Consensus 64 YELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaHL~~ 110 (144)
-||||+... =..||-+|-+-+|-.=||+-||+|=.++.
T Consensus 314 LELGIDiG~---------vdlVIq~~SP~sV~r~lQRiGRsgHr~~~ 351 (814)
T COG1201 314 LELGIDIGD---------IDLVIQLGSPKSVNRFLQRIGRAGHRLGE 351 (814)
T ss_pred hhhccccCC---------ceEEEEeCCcHHHHHHhHhccccccccCC
Confidence 477777332 24688999999999999999999988876
No 34
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=21.53 E-value=70 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=17.4
Q ss_pred hhhHHHHHHhhCCCCCCCCCCCCCCCCchHH
Q 041854 91 ADSVRTRLQCYGRSGAHLNNNPSNGSGCFDD 121 (144)
Q Consensus 91 aenVR~RLq~YGr~GaHL~~~~~~g~~LF~e 121 (144)
.+.|.+|++.||.+----. +..++|.-
T Consensus 13 ~~~v~~r~~~~G~N~l~~~----~~~s~~~~ 39 (64)
T smart00831 13 SEEAARRLERYGPNELPPP----KKRSPLLR 39 (64)
T ss_pred HHHHHHHHHHhCCCCCCCC----CCCCHHHH
Confidence 3568999999999843322 23455543
No 35
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=21.39 E-value=60 Score=21.66 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=11.0
Q ss_pred chhhHHHHHHhh
Q 041854 90 QADSVRTRLQCY 101 (144)
Q Consensus 90 qaenVR~RLq~Y 101 (144)
..++|+++||.|
T Consensus 42 T~~qV~SH~QKy 53 (57)
T TIGR01557 42 TRDQVASHLQKY 53 (57)
T ss_pred CHHHHHHHHHHH
Confidence 688999999998
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.57 E-value=1.1e+02 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEeccchhhHHHHHHhhCCCCCCC
Q 041854 85 VVYLGQADSVRTRLQCYGRSGAHL 108 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YGr~GaHL 108 (144)
||-.|-+.++.+=+|+-||+|=.=
T Consensus 407 VI~~~~P~s~~~y~Qr~GRaGR~g 430 (475)
T PRK01297 407 VINFTLPEDPDDYVHRIGRTGRAG 430 (475)
T ss_pred EEEeCCCCCHHHHHHhhCccCCCC
Confidence 345588888999999999888653
Done!