Query 041854
Match_columns 144
No_of_seqs 28 out of 30
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 19:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mk0a_ d.226.1.1 (A:) Homing 74.2 0.53 3.9E-05 29.9 1.2 35 86-126 16-53 (97)
2 d1irza_ a.4.1.11 (A:) Arr10-B 38.1 6.1 0.00044 24.7 1.4 12 90-101 45-56 (64)
3 d1a1va2 c.37.1.14 (A:326-624) 33.2 9.5 0.00069 30.1 2.1 28 79-106 114-142 (299)
4 d1sqwa1 b.122.1.1 (A:95-170) N 28.9 9.9 0.00072 25.0 1.3 45 44-89 21-73 (76)
5 d1y8xa1 d.20.1.1 (A:27-183) Ub 27.4 20 0.0014 24.6 2.8 32 5-36 2-42 (157)
6 d1t5la2 c.37.1.19 (A:415-595) 23.9 17 0.0012 25.4 1.9 26 82-107 101-130 (181)
7 d1f86a_ b.3.4.1 (A:) Transthyr 19.9 20 0.0015 23.9 1.5 35 35-70 30-66 (115)
8 d1o6ba_ c.26.1.3 (A:) Phosphop 19.3 23 0.0016 22.2 1.6 17 91-107 146-163 (163)
9 d1hc7a1 c.51.1.1 (A:277-403) P 17.8 53 0.0039 21.2 3.3 52 77-129 8-70 (127)
10 d1hv8a2 c.37.1.19 (A:211-365) 17.7 36 0.0026 22.1 2.4 22 85-106 100-121 (155)
No 1
>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=74.19 E-value=0.53 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=25.3
Q ss_pred EeccchhhHHHHHHhhCC---CCCCCCCCCCCCCCchHHHhhcc
Q 041854 86 VYLGQADSVRTRLQCYGR---SGAHLNNNPSNGSGCFDDIFSRR 126 (144)
Q Consensus 86 VYlGqaenVR~RLq~YGr---~GaHL~~~~~~g~~LF~eiFs~g 126 (144)
+|+|++-|++.|+.+|=+ .+.|.. ..|.+.|..-|
T Consensus 16 ~YIG~t~nl~~R~~~h~~~~~~~~~~~------~~l~~~~~k~g 53 (97)
T d1mk0a_ 16 VYVGSAKDFEKRWKRHFKDLEKGCHSS------IKLQRSFNKHG 53 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTCCSC------HHHHHHHHHHS
T ss_pred EEEEEeCcHHHHHHHHHHHhhccCCcc------HHHHHHHHhcc
Confidence 799999999999999843 233332 36777776655
No 2
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.09 E-value=6.1 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.5
Q ss_pred chhhHHHHHHhh
Q 041854 90 QADSVRTRLQCY 101 (144)
Q Consensus 90 qaenVR~RLq~Y 101 (144)
-.++|+++||.|
T Consensus 45 T~~qV~SHlQKY 56 (64)
T d1irza_ 45 TRENVASHLQKF 56 (64)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 357999999999
No 3
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=33.24 E-value=9.5 Score=30.05 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCCCe-EEEeccchhhHHHHHHhhCCCCC
Q 041854 79 DSDDV-VVVYLGQADSVRTRLQCYGRSGA 106 (144)
Q Consensus 79 ~~~dV-vvVYlGqaenVR~RLq~YGr~Ga 106 (144)
+.+.| .|+..+-+.|+.+.+||-||+|=
T Consensus 114 Did~V~~VI~~d~P~SvesyIQRiGRTGR 142 (299)
T d1a1va2 114 SLDPTFTIETTTLPQDAVSRTQRRGRTGR 142 (299)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CCCcceEEEeCCCCCCHHHHHhhccccCC
Confidence 44443 46777889999999999999994
No 4
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.88 E-value=9.9 Score=25.01 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=29.7
Q ss_pred cCCcccceeecCCCCCCCceee-----eceeccc---CCCCCCCCCCeEEEecc
Q 041854 44 KEGADRYRVHNLPSTSGPGVYE-----LGIVASR---SRTDRIDSDDVVVVYLG 89 (144)
Q Consensus 44 Keg~~RYRv~NLP~~s~pGlYE-----LGV~~~~---~~~g~l~~~dVvvVYlG 89 (144)
|.|++|- .+|.|++++-=+|. ||..+.. .+.++++|..|||...+
T Consensus 21 K~~l~ri-te~~p~~~GVvV~sm~D~PLGFGvaakst~e~r~~dp~~ivv~hQa 73 (76)
T d1sqwa1 21 KSGLGRI-TENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQA 73 (76)
T ss_dssp GGGEEEE-CTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEE
T ss_pred hhhcccc-cCCCCCCceEEEEeCCCCccceeeeccCHHHHhhCCCccEEEEEec
Confidence 4455554 47788887766665 5655543 33558999999987643
No 5
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}
Probab=27.41 E-value=20 Score=24.56 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=20.7
Q ss_pred hHHHHhhhhhhcccc---------cCCCCccCceEeecCCC
Q 041854 5 ETEIIRIKREECKRT---------KHDAHFSKWKILVGASD 36 (144)
Q Consensus 5 ~~~~~rlKREd~~rt---------KHD~~FS~WkILigpsD 36 (144)
.+|..||.+|=-.-. ..+....+|++.|||.|
T Consensus 2 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~ 42 (157)
T d1y8xa1 2 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDE 42 (157)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSS
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCC
Confidence 466788888732211 12245779999999965
No 6
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=23.87 E-value=17 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=19.1
Q ss_pred CeEEEec----cchhhHHHHHHhhCCCCCC
Q 041854 82 DVVVVYL----GQADSVRTRLQCYGRSGAH 107 (144)
Q Consensus 82 dVvvVYl----GqaenVR~RLq~YGr~GaH 107 (144)
+.|+.|= |...+.++.+|+-||+|--
T Consensus 101 ~~VI~~d~p~~~~~~s~~~yi~R~GRagR~ 130 (181)
T d1t5la2 101 SLVAILDADKEGFLRSERSLIQTIGRAARN 130 (181)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTS
T ss_pred CEEEEecCCcccccccHHHHHHHHHhhccc
Confidence 4555554 3346899999999999873
No 7
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.89 E-value=20 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=20.8
Q ss_pred CChhhhhcccCCc-ccceeecCCC-CCCCceeeeceec
Q 041854 35 SDWADYLLGKEGA-DRYRVHNLPS-TSGPGVYELGIVA 70 (144)
Q Consensus 35 sDWeD~~~GKeg~-~RYRv~NLP~-~s~pGlYELGV~~ 70 (144)
+.|+-.+.|+-.. +|.. +-++. +..+|+|||=...
T Consensus 30 ~~~~~i~~~~Td~dGRi~-~~~~~~~~~~G~Y~l~F~~ 66 (115)
T d1f86a_ 30 DTWEPFASGKTSESGELH-GLTTEEEFVEGIYKVEIDT 66 (115)
T ss_dssp SCEEEEEEEECCTTSEEC-CSCCTTTCCSEEEEEEECH
T ss_pred CCEEEEEEEEeCCCCccc-CccCcccCCCeEEEEEEEH
Confidence 4466666665433 3754 33344 4569999996554
No 8
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=19.26 E-value=23 Score=22.20 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=12.1
Q ss_pred hhhHHHHH-HhhCCCCCC
Q 041854 91 ADSVRTRL-QCYGRSGAH 107 (144)
Q Consensus 91 aenVR~RL-q~YGr~GaH 107 (144)
+++|.+=| +.|.|+|+|
T Consensus 146 P~~V~~yI~e~~~~~~~~ 163 (163)
T d1o6ba_ 146 PPEVELALQQKFRQGGSH 163 (163)
T ss_dssp CHHHHHHHHHHHHSCSCC
T ss_pred CHHHHHHHHHHHhccCCC
Confidence 45566666 459999998
No 9
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=17.83 E-value=53 Score=21.16 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCCCCeEEEecc----------chhhHHHHHHhhCCCCCCCCCCCCCCCC-chHHHhhcccee
Q 041854 77 RIDSDDVVVVYLG----------QADSVRTRLQCYGRSGAHLNNNPSNGSG-CFDDIFSRRHAI 129 (144)
Q Consensus 77 ~l~~~dVvvVYlG----------qaenVR~RLq~YGr~GaHL~~~~~~g~~-LF~eiFs~g~si 129 (144)
.|.|-.|++|-++ .|+.|+++|+..|=. ..++.....+.| -|.+-=..|+++
T Consensus 8 ~lAP~qv~Iipi~~~~~~~~~~~~a~~i~~~L~~~gir-v~~Dd~~~~~~g~K~~~a~~~giP~ 70 (127)
T d1hc7a1 8 RLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLR-VHLDDRDQHTPGYKFHEWELKGVPF 70 (127)
T ss_dssp TTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCC-EEECCCSSSCHHHHHHHHHHTTCSE
T ss_pred hhCCeeEEEEEecCChhhHHHHHHHHHHHHHHHHcCCe-eEEecccchhHHHHHHHHHhhcCCe
Confidence 4788999999887 377899999987642 344443333222 344433455543
No 10
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=17.75 E-value=36 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEeccchhhHHHHHHhhCCCCC
Q 041854 85 VVYLGQADSVRTRLQCYGRSGA 106 (144)
Q Consensus 85 vVYlGqaenVR~RLq~YGr~Ga 106 (144)
||..+-+.|..+-+|+-||+|=
T Consensus 100 Vi~~d~p~~~~~y~qr~GR~gR 121 (155)
T d1hv8a2 100 VINYHLPQNPESYMHRIGRTGR 121 (155)
T ss_dssp EEESSCCSCHHHHHHHSTTTCC
T ss_pred EEEecCCCCHHHHHHHHHhcCc
Confidence 5566999999999999999984
Done!