BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041855
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q ++R LV+L +S + L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F+ W R
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + +FS + G +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIFSYLPAFK-VFGASAKVVHFLGRVKPW 221
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S+NGGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + +FS + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + +FS + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q ++R LV+L +S + L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F+ W R
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIYSYLPAFK-VFGASAKVVHFLGRVKPW 221
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q ++R LV+L +S + L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F+ W R
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIYSYLPAFK-VFGASAKVVHFLGRVKPW 221
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q ++R LV+L +S + L
Sbjct: 26 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 84
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 85 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 144
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F+ W R
Sbjct: 145 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 204
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG +KPW
Sbjct: 205 LPFIYNLSSISIYSYLPAFK-VFGASAKVVHFLGRVKPW 242
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 10 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 68
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 69 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 128
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 129 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 188
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 189 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 226
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 63 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 183 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 220
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GGDQG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 43/219 (19%)
Query: 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
+A+VT L +++AY GA+ L S+ Q +SR L +L +S ++L
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 77 ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
+ ++ ++ P K ++ YSK F F ELSA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
A + FNSGV V +PS+ + L+ + + S++GG QG LN F W R
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKH 202
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
++ + ++S + G +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFK-AFGANAKVVHFLGQTKPW 240
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 42 IALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAG--WKTKWISRIRSPFAKKDSYNEW 99
I L + +Q+ V H GK + + +++G W ++ +R PF KK + E+
Sbjct: 38 ICLKRATVQRAQH---VFQHAVPQEGKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEF 94
Query: 100 NYSKLRFFFY 109
+S+ FF+
Sbjct: 95 EFSQSYLFFW 104
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 42 IALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAG--WKTKWISRIRSPFAKKDSYNEW 99
I L + +Q+ V H GK + + +++G W ++ +R PF KK + E+
Sbjct: 38 ICLKRATVQRAQH---VFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEF 94
Query: 100 NYSKLRFFFY 109
+S+ FF+
Sbjct: 95 EFSQSYLFFW 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,147,420
Number of Sequences: 62578
Number of extensions: 234979
Number of successful extensions: 580
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 33
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)