Query 041855
Match_columns 203
No_of_seqs 130 out of 899
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00176 galactinol synthase 100.0 2.7E-43 6E-48 303.0 16.6 182 20-203 18-267 (333)
2 cd02537 GT8_Glycogenin Glycoge 100.0 1.2E-36 2.7E-41 252.9 16.3 178 25-203 1-213 (240)
3 cd06914 GT8_GNT1 GNT1 is a fun 100.0 2.7E-33 5.9E-38 236.2 13.7 178 25-203 1-239 (278)
4 cd00505 Glyco_transf_8 Members 100.0 2.1E-28 4.6E-33 203.8 12.8 176 26-203 2-245 (246)
5 cd04194 GT8_A4GalT_like A4GalT 99.9 6.4E-27 1.4E-31 194.7 6.1 171 32-203 6-247 (248)
6 PF01501 Glyco_transf_8: Glyco 99.9 6.6E-27 1.4E-31 192.2 4.3 173 31-203 4-247 (250)
7 PRK15171 lipopolysaccharide 1, 99.9 9.2E-26 2E-30 195.9 7.9 172 31-203 30-271 (334)
8 COG1442 RfaJ Lipopolysaccharid 99.9 5E-24 1.1E-28 183.3 12.0 169 32-203 8-245 (325)
9 cd06431 GT8_LARGE_C LARGE cata 99.9 3.6E-23 7.9E-28 175.6 8.5 175 25-203 3-252 (280)
10 cd06429 GT8_like_1 GT8_like_1 99.9 4.7E-22 1E-26 166.8 8.3 165 33-203 7-241 (257)
11 cd06432 GT8_HUGT1_C_like The C 99.7 1.9E-17 4.1E-22 138.5 9.3 161 32-198 7-239 (248)
12 cd06430 GT8_like_2 GT8_like_2 99.7 6.3E-17 1.4E-21 138.1 9.5 169 28-198 3-254 (304)
13 PLN02718 Probable galacturonos 99.7 8E-17 1.7E-21 146.4 5.8 168 34-203 320-574 (603)
14 PLN02523 galacturonosyltransfe 99.5 1.2E-14 2.6E-19 131.0 8.0 177 22-203 246-530 (559)
15 COG5597 Alpha-N-acetylglucosam 99.5 8.4E-15 1.8E-19 123.1 -0.0 151 24-174 70-318 (368)
16 PLN02867 Probable galacturonos 99.4 6.3E-14 1.4E-18 126.3 2.8 83 121-203 413-506 (535)
17 PLN02742 Probable galacturonos 99.3 3.1E-12 6.6E-17 115.4 6.1 83 120-203 415-506 (534)
18 PLN02659 Probable galacturonos 99.2 5.4E-12 1.2E-16 113.6 4.4 82 121-203 412-504 (534)
19 PLN02870 Probable galacturonos 99.2 3.6E-12 7.8E-17 114.7 2.1 82 121-203 411-503 (533)
20 PLN02829 Probable galacturonos 99.2 2E-11 4.4E-16 111.5 3.6 83 120-203 519-610 (639)
21 PLN02769 Probable galacturonos 99.1 1.1E-10 2.3E-15 107.3 4.4 82 120-203 508-601 (629)
22 PLN02910 polygalacturonate 4-a 99.0 1.2E-10 2.7E-15 106.3 3.9 82 121-203 538-628 (657)
23 KOG1950 Glycosyl transferase, 98.9 5.5E-10 1.2E-14 98.5 2.0 178 22-202 74-286 (369)
24 PLN03182 xyloglucan 6-xylosylt 94.9 0.058 1.3E-06 48.1 5.8 82 120-202 243-362 (429)
25 PF11051 Mannosyl_trans3: Mann 93.0 1.1 2.5E-05 37.8 9.8 99 34-132 9-128 (271)
26 PLN03181 glycosyltransferase; 91.2 0.34 7.5E-06 43.4 4.7 56 120-175 244-326 (453)
27 PF07801 DUF1647: Protein of u 86.7 6.8 0.00015 30.1 8.4 62 20-84 57-120 (142)
28 PF03407 Nucleotid_trans: Nucl 84.4 1.5 3.2E-05 35.2 4.0 40 121-162 111-153 (212)
29 PF05637 Glyco_transf_34: gala 83.1 0.37 8E-06 40.1 0.0 77 120-201 143-234 (239)
30 cd02071 MM_CoA_mut_B12_BD meth 64.1 16 0.00035 26.7 4.7 52 27-79 53-104 (122)
31 TIGR00640 acid_CoA_mut_C methy 61.6 18 0.00039 27.2 4.6 46 33-79 62-107 (132)
32 cd06448 L-Ser-dehyd Serine deh 47.9 1.7E+02 0.0037 25.1 9.1 52 26-84 53-104 (316)
33 cd01562 Thr-dehyd Threonine de 47.2 89 0.0019 26.3 7.1 53 26-85 67-119 (304)
34 PRK11761 cysM cysteine synthas 44.3 1.5E+02 0.0032 25.2 8.0 54 25-85 64-117 (296)
35 PLN02565 cysteine synthase 43.1 2.2E+02 0.0048 24.6 9.8 54 25-85 68-121 (322)
36 TIGR02035 D_Ser_am_lyase D-ser 42.0 1.3E+02 0.0028 27.4 7.5 48 32-84 158-205 (431)
37 PF07788 DUF1626: Protein of u 41.4 49 0.0011 22.3 3.6 30 50-79 41-70 (70)
38 COG0031 CysK Cysteine synthase 41.3 70 0.0015 27.7 5.5 33 53-85 84-116 (300)
39 PF01793 Glyco_transf_15: Glyc 41.2 1.4E+02 0.003 26.2 7.3 58 17-76 49-109 (328)
40 PRK09722 allulose-6-phosphate 41.1 1.7E+02 0.0036 24.2 7.5 61 24-84 130-197 (229)
41 PLN02556 cysteine synthase/L-3 35.3 2.3E+02 0.0049 25.1 7.9 53 26-85 113-165 (368)
42 PRK08745 ribulose-phosphate 3- 35.0 2.3E+02 0.0049 23.3 7.4 60 24-83 132-198 (223)
43 PRK02991 D-serine dehydratase; 35.0 1.9E+02 0.0042 26.3 7.6 52 26-84 159-210 (441)
44 COG0021 TktA Transketolase [Ca 33.9 2.6E+02 0.0056 27.0 8.3 74 8-83 130-217 (663)
45 PRK08091 ribulose-phosphate 3- 33.3 2.5E+02 0.0053 23.3 7.3 59 25-83 141-206 (228)
46 TIGR01138 cysM cysteine syntha 32.9 2.8E+02 0.0062 23.4 8.0 53 26-85 61-113 (290)
47 PRK08246 threonine dehydratase 32.1 1.7E+02 0.0037 25.0 6.5 53 25-84 69-121 (310)
48 cd00640 Trp-synth-beta_II Tryp 31.9 2.7E+02 0.0059 22.4 9.7 32 53-84 72-103 (244)
49 KOG4748 Subunit of Golgi manno 30.7 90 0.0019 27.8 4.5 75 120-199 247-333 (364)
50 PRK07048 serine/threonine dehy 30.3 2.2E+02 0.0049 24.3 7.0 47 33-84 79-125 (321)
51 PTZ00413 lipoate synthase; Pro 30.3 2.6E+02 0.0055 25.3 7.3 69 12-82 184-257 (398)
52 PLN03013 cysteine synthase 28.8 1.6E+02 0.0035 26.8 6.0 54 25-85 176-229 (429)
53 PF11316 Rhamno_transf: Putati 28.4 1.1E+02 0.0024 25.4 4.5 36 41-76 44-80 (234)
54 PRK08005 epimerase; Validated 28.2 3.2E+02 0.0069 22.2 7.1 58 24-83 128-190 (210)
55 PRK08883 ribulose-phosphate 3- 28.0 3.3E+02 0.0072 22.2 7.4 59 25-83 129-194 (220)
56 cd02515 Glyco_transf_6 Glycosy 27.8 41 0.00089 28.6 1.9 40 136-175 205-247 (271)
57 PLN02356 phosphateglycerate ki 27.4 2E+02 0.0043 26.1 6.3 49 32-85 110-158 (423)
58 TIGR01136 cysKM cysteine synth 27.1 2E+02 0.0044 24.2 6.1 48 32-84 64-111 (299)
59 PRK14057 epimerase; Provisiona 26.2 3.8E+02 0.0081 22.6 7.3 60 24-83 154-220 (254)
60 PRK06381 threonine synthase; V 24.9 1.9E+02 0.0041 24.7 5.5 47 33-84 70-116 (319)
61 PF13344 Hydrolase_6: Haloacid 24.3 1.9E+02 0.0042 20.2 4.6 45 34-80 12-58 (101)
62 cd01563 Thr-synth_1 Threonine 23.7 2E+02 0.0044 24.5 5.5 53 25-84 71-123 (324)
63 PF10178 DUF2372: Uncharacteri 23.5 2.6E+02 0.0057 19.6 5.1 53 23-75 29-83 (90)
64 cd01454 vWA_norD_type norD typ 23.4 2.6E+02 0.0056 21.2 5.6 42 43-84 92-149 (174)
65 COG3158 Kup K+ transporter [In 23.3 85 0.0018 29.7 3.1 51 28-80 482-538 (627)
66 KOG4472 Glycolipid 2-alpha-man 22.9 3.3E+02 0.0072 24.5 6.6 53 23-77 81-136 (399)
67 COG5020 KTR1 Mannosyltransfera 22.9 3.3E+02 0.0072 24.5 6.6 53 23-77 81-136 (399)
68 PRK06608 threonine dehydratase 22.8 1.6E+02 0.0034 25.7 4.7 47 33-84 79-125 (338)
69 cd06447 D-Ser-dehyd D-Serine d 22.7 2.3E+02 0.0049 25.5 5.8 52 26-84 136-187 (404)
70 KOG1252 Cystathionine beta-syn 22.6 1E+02 0.0023 27.2 3.4 33 53-85 126-158 (362)
71 TIGR02991 ectoine_eutB ectoine 22.1 2.2E+02 0.0047 24.5 5.4 48 32-84 73-120 (317)
72 PRK14329 (dimethylallyl)adenos 21.9 3E+02 0.0065 25.1 6.5 55 12-68 13-74 (467)
73 TIGR03528 2_3_DAP_am_ly diamin 21.8 4.9E+02 0.011 23.2 7.7 52 26-84 115-166 (396)
74 PLN00011 cysteine synthase 21.8 2.6E+02 0.0055 24.1 5.8 52 26-84 71-122 (323)
75 PLN02970 serine racemase 21.4 2.6E+02 0.0056 24.1 5.7 48 32-84 81-128 (328)
76 cd01561 CBS_like CBS_like: Thi 21.4 2.6E+02 0.0057 23.4 5.7 53 25-84 54-106 (291)
77 PRK08206 diaminopropionate amm 21.2 4.2E+02 0.0092 23.6 7.2 48 32-84 122-169 (399)
78 CHL00123 rps6 ribosomal protei 20.6 2.4E+02 0.0051 19.8 4.5 33 54-86 7-47 (97)
79 PF00291 PALP: Pyridoxal-phosp 20.6 2.9E+02 0.0063 22.9 5.8 48 32-84 62-109 (306)
80 PRK10717 cysteine synthase A; 20.5 3.1E+02 0.0067 23.5 6.1 53 26-85 66-118 (330)
81 COG1324 CutA Uncharacterized p 20.4 2E+02 0.0043 20.9 3.9 35 126-160 55-99 (104)
82 PRK09426 methylmalonyl-CoA mut 20.3 1.8E+02 0.0038 28.4 4.8 53 27-80 636-688 (714)
83 PRK14053 methyltransferase; Pr 20.3 68 0.0015 25.8 1.7 57 21-78 20-92 (194)
84 PRK06450 threonine synthase; V 20.3 3E+02 0.0066 23.9 6.0 32 53-84 119-150 (338)
85 PRK08638 threonine dehydratase 20.2 3E+02 0.0065 23.8 5.9 33 52-84 96-128 (333)
86 PRK07476 eutB threonine dehydr 20.1 2E+02 0.0042 24.7 4.7 51 27-84 70-120 (322)
No 1
>PLN00176 galactinol synthase
Probab=100.00 E-value=2.7e-43 Score=303.05 Aligned_cols=182 Identities=27% Similarity=0.418 Sum_probs=156.2
Q ss_pred CCCCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC----------
Q 041855 20 TYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP---------- 89 (203)
Q Consensus 20 ~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p---------- 89 (203)
...+++||||+|++|++|++|+++|++||+++++++|++|+++++||+++++.|++.|+.+++|+++.++
T Consensus 18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~ 97 (333)
T PLN00176 18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAY 97 (333)
T ss_pred cccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccch
Confidence 3477899999999999999999999999999999999999999999999999999999999999877532
Q ss_pred ----CCccccccccceeEEE--------------EeccCc--cccCCCC-------------------------------
Q 041855 90 ----FAKKDSYNEWNYSKLR--------------FFFYPE--LSAAGND------------------------------- 118 (203)
Q Consensus 90 ----~~k~~~~~l~~Y~rl~--------------Lfd~~~--~aA~~d~------------------------------- 118 (203)
++|+++|.+++|+|++ ||+++. ++||.|.
T Consensus 98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g 177 (333)
T PLN00176 98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG 177 (333)
T ss_pred hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence 4578899999999997 788753 5555441
Q ss_pred ---cccccccEEEEeCCHHHHHHHHHHhhcCCCCCCChHhHHHHHhh-cCCCCCCcccceeee-ccCCCcccccCCceEE
Q 041855 119 ---KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFT-WWHRLPKRINHLKVF-SKQDDKEHQVGDGLYA 193 (203)
Q Consensus 119 ---~~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~-~~~~~~~~~~~~~~~I 193 (203)
..||||||||++|+.+++++|++.+...+.+.++|||+||.+|+ +|..||.+||++..+ +.+ ++.+..++++|
T Consensus 178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~--~~~~~~~~vkI 255 (333)
T PLN00176 178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRH--PENVELDKVKV 255 (333)
T ss_pred CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhC--hhhcccCCcEE
Confidence 13999999999999999999999988776778999999999998 899999999999743 333 23345678999
Q ss_pred EEEec--CCCCC
Q 041855 194 IHYLG--LKPWM 203 (203)
Q Consensus 194 IHf~g--~KPW~ 203 (203)
|||+| .|||+
T Consensus 256 IHY~~~~~KPW~ 267 (333)
T PLN00176 256 VHYCAAGSKPWR 267 (333)
T ss_pred EEeeCCCCCCCC
Confidence 99996 59995
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=100.00 E-value=1.2e-36 Score=252.87 Aligned_cols=178 Identities=38% Similarity=0.618 Sum_probs=152.1
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC--------------C
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP--------------F 90 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p--------------~ 90 (203)
+||||++ +|++|+.+++++++||++++++++++|+++++++++.++.|++.|.+++.++.++.+ +
T Consensus 1 ~ay~t~~-~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (240)
T cd02537 1 EAYVTLL-TNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPDSANLLKRPRFKDTY 79 (240)
T ss_pred CEEEEEe-cChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcchhhhccchHHHHHh
Confidence 5999997 588999999999999999999999999999999999999999999999888877654 2
Q ss_pred CccccccccceeEEE--------------Eecc-CccccCCCCc--ccccccEEEEeCCHHHHHHHHHHhhcCCCCCCCh
Q 041855 91 AKKDSYNEWNYSKLR--------------FFFY-PELSAAGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGD 153 (203)
Q Consensus 91 ~k~~~~~l~~Y~rl~--------------Lfd~-~~~aA~~d~~--~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~~~D 153 (203)
+|+.+|.+.+|+|++ ||++ ..++|++|.. .|||||||+++|+...++++++.+.+..++.++|
T Consensus 80 ~kl~~~~l~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~D 159 (240)
T cd02537 80 TKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGD 159 (240)
T ss_pred HHHHhccccccceEEEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCCHHHHHHHHHHHhccCCCCCCC
Confidence 355677888999997 7787 4588888875 6999999999999999999999998776788899
Q ss_pred HhHHHHHhh-c--CCCCCCcccceeeeccCCCcccccCCceEEEEEec-CCCCC
Q 041855 154 QGFLNEVFT-W--WHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPWM 203 (203)
Q Consensus 154 Qd~LN~~f~-~--w~~Lp~~yN~~~~~~~~~~~~~~~~~~~~IIHf~g-~KPW~ 203 (203)
||+||.+|+ + |..||.+||++...........+..++++||||+| .|||+
T Consensus 160 QdiLN~~~~~~~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 213 (240)
T cd02537 160 QGLLNSYFSDRGIWKRLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWS 213 (240)
T ss_pred HHHHHHHHcCCCCEeECCcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCC
Confidence 999999998 7 99999999998654322111134567899999999 89995
No 3
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=100.00 E-value=2.7e-33 Score=236.18 Aligned_cols=178 Identities=29% Similarity=0.366 Sum_probs=140.2
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHH-------HHHcCCeEEEecccCCC--------
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRS-------LRAAGWKTKWISRIRSP-------- 89 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~-------L~~~g~~v~~v~~i~~p-------- 89 (203)
+||||++ |+++|++||++|++||+++++++++|+|+++++++...+. +.+.+..+..++.+..+
T Consensus 1 fAYvtl~-Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~~ 79 (278)
T cd06914 1 YAYVNYA-TNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASGGDAYWAK 79 (278)
T ss_pred CeEEEEe-cChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCCCCccHHH
Confidence 5999997 5899999999999999999999999999999998765332 33457777666655432
Q ss_pred -CCccccccccceeEEE--------------EeccC-c-cccCCCCcccccccEEEEeCCHHHHHHHHHHhhcCCC--CC
Q 041855 90 -FAKKDSYNEWNYSKLR--------------FFFYP-E-LSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSS--YN 150 (203)
Q Consensus 90 -~~k~~~~~l~~Y~rl~--------------Lfd~~-~-~aA~~d~~~yfNsGvmvi~p~~~~~~~l~~~~~~~~~--~~ 150 (203)
++|+++|.+++|+||+ ||+++ + ..|+|+.++|||||||||+|+.+.+++|++.+....+ ..
T Consensus 80 ~~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~~ 159 (278)
T cd06914 80 SLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYWKFASHLMVIKPSKEAFKELMTEILPAYLNKKN 159 (278)
T ss_pred HHHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcceecceeEEEeCCHHHHHHHHHHHHHhcccCCC
Confidence 5688999999999998 77776 2 2467777889999999999999999999999875432 36
Q ss_pred CChHhHHHHHhh-c-------CCCCCCc-ccceeeeccCC-----------Ccccc----cCCceEEEEEec---CCCCC
Q 041855 151 GGDQGFLNEVFT-W-------WHRLPKR-INHLKVFSKQD-----------DKEHQ----VGDGLYAIHYLG---LKPWM 203 (203)
Q Consensus 151 ~~DQd~LN~~f~-~-------w~~Lp~~-yN~~~~~~~~~-----------~~~~~----~~~~~~IIHf~g---~KPW~ 203 (203)
++|||+||.+|. . +..||.+ ||++....+.. ..+.| ...+.|+|||++ +|||.
T Consensus 160 ~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~ 239 (278)
T cd06914 160 EYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWN 239 (278)
T ss_pred CCChHHHHHHHhCCccccCcceEEcCccccccCChhhcccCHHHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcC
Confidence 789999999998 5 6689997 99986422111 12222 236899999997 59995
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.96 E-value=2.1e-28 Score=203.79 Aligned_cols=176 Identities=27% Similarity=0.355 Sum_probs=123.8
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHcC----C--eEEEecccCC---C------
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAAG----W--KTKWISRIRS---P------ 89 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~g----~--~v~~v~~i~~---p------ 89 (203)
++|++ ++|++|+.++.|+++||++++++ ++.+ +++++++++.++.|++.. . ++++++.... +
T Consensus 2 ~i~~~-a~d~~y~~~~~v~i~Sl~~~~~~-~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (246)
T cd00505 2 AIVIV-ATGDEYLRGAIVLMKSVLRHRTK-PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPI 79 (246)
T ss_pred eEEEE-ecCcchhHHHHHHHHHHHHhCCC-CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCcc
Confidence 67776 67889999999999999998776 5444 556789999999998752 2 2333332111 1
Q ss_pred ----CCcccccccc-ceeEEE--------------EeccC----ccccCCCC------------------cccccccEEE
Q 041855 90 ----FAKKDSYNEW-NYSKLR--------------FFFYP----ELSAAGND------------------KVLFNSGVMV 128 (203)
Q Consensus 90 ----~~k~~~~~l~-~Y~rl~--------------Lfd~~----~~aA~~d~------------------~~yfNsGvmv 128 (203)
+.++..+.+. +|+|++ ||+++ .+|||+|. ..||||||||
T Consensus 80 ~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVml 159 (246)
T cd00505 80 KIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFV 159 (246)
T ss_pred ccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEE
Confidence 1122233333 488887 56554 35677663 2499999999
Q ss_pred EeCCHHHHHHHHHHhh-----cCCCCCCChHhHHHHHhh-c---CCCCCCcccceeeeccCC-CcccccCCceEEEEEec
Q 041855 129 IEPSLCKFEDLMLKSF-----QVSSYNGGDQGFLNEVFT-W---WHRLPKRINHLKVFSKQD-DKEHQVGDGLYAIHYLG 198 (203)
Q Consensus 129 i~p~~~~~~~l~~~~~-----~~~~~~~~DQd~LN~~f~-~---w~~Lp~~yN~~~~~~~~~-~~~~~~~~~~~IIHf~g 198 (203)
++++.+.++++++... ...++.++|||+||.+|. . |..||.+||++....... .......++++||||+|
T Consensus 160 inl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g 239 (246)
T cd00505 160 VNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNG 239 (246)
T ss_pred EechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCC
Confidence 9999998777766432 233577899999999998 5 899999999997532211 11123567899999999
Q ss_pred -CCCCC
Q 041855 199 -LKPWM 203 (203)
Q Consensus 199 -~KPW~ 203 (203)
.|||+
T Consensus 240 ~~KPW~ 245 (246)
T cd00505 240 PTKPWN 245 (246)
T ss_pred CCCCCC
Confidence 79996
No 5
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.93 E-value=6.4e-27 Score=194.70 Aligned_cols=171 Identities=25% Similarity=0.262 Sum_probs=120.2
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeEEEecccCCC-------CC--------
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKTKWISRIRSP-------FA-------- 91 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v~~v~~i~~p-------~~-------- 91 (203)
++|++|+.++.+++.||+++++..++.+ +++++++++.++.|++. +..+. +.+++.+ ..
T Consensus 6 ~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~~~~y 84 (248)
T cd04194 6 AIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIE-FIKIDNDDFKFFPATTDHISYATY 84 (248)
T ss_pred EecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEE-EEEcCHHHHhcCCcccccccHHHH
Confidence 5699999999999999999988555554 44678999999999887 33332 2223221 01
Q ss_pred -ccccccc-cceeEEE--------------EeccC----ccccCCCC-----------------cccccccEEEEeCCHH
Q 041855 92 -KKDSYNE-WNYSKLR--------------FFFYP----ELSAAGND-----------------KVLFNSGVMVIEPSLC 134 (203)
Q Consensus 92 -k~~~~~l-~~Y~rl~--------------Lfd~~----~~aA~~d~-----------------~~yfNsGvmvi~p~~~ 134 (203)
++..+.+ .+|+|++ ||+++ .++|++|. ..||||||||++++.+
T Consensus 85 ~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~l~nl~~~ 164 (248)
T cd04194 85 YRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLINLKKW 164 (248)
T ss_pred HHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecchheeHHHH
Confidence 1112222 3588887 56553 25666652 2599999999999876
Q ss_pred H----HHHHHHHhhcCC-CCCCChHhHHHHHhh-cCCCCCCcccceeeeccCCCc-------ccccCCceEEEEEec-CC
Q 041855 135 K----FEDLMLKSFQVS-SYNGGDQGFLNEVFT-WWHRLPKRINHLKVFSKQDDK-------EHQVGDGLYAIHYLG-LK 200 (203)
Q Consensus 135 ~----~~~l~~~~~~~~-~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~~~~~~-------~~~~~~~~~IIHf~g-~K 200 (203)
. .+++++.+.+.. .+.++|||+||.+|. +|..||.+||++......... ..+..++++||||+| .|
T Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~K 244 (248)
T cd04194 165 REENITEKLLELIKEYGGRLIYPDQDILNAVLKDKILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDK 244 (248)
T ss_pred HHhhhHHHHHHHHHhCCCceeeCChHHHHHHHhCCeEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCC
Confidence 5 455666665543 477899999999998 799999999999753221100 123567899999999 89
Q ss_pred CCC
Q 041855 201 PWM 203 (203)
Q Consensus 201 PW~ 203 (203)
||+
T Consensus 245 PW~ 247 (248)
T cd04194 245 PWN 247 (248)
T ss_pred CCC
Confidence 995
No 6
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.93 E-value=6.6e-27 Score=192.23 Aligned_cols=173 Identities=30% Similarity=0.399 Sum_probs=118.3
Q ss_pred eecCcchHHHHHHHHHHHHhhCCC-CcEEE-EecCCCCHHHHHHHHHcCCeEEEeccc---C---------C--------
Q 041855 31 LHSSEAYVCGAIALAESIIQKNSS-RDLVL-LHDKSISGKSLRSLRAAGWKTKWISRI---R---------S-------- 88 (203)
Q Consensus 31 l~~d~~Y~~~~~vl~~SL~~~~~~-~~lvv-lv~~~v~~~~~~~L~~~g~~v~~v~~i---~---------~-------- 88 (203)
+++|++|+.+++|+++||++++++ .++++ +++++++++.++.|++.+..+..+..+ . .
T Consensus 4 ~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T PF01501_consen 4 LACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFS 83 (250)
T ss_dssp EECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGG
T ss_pred EEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccccc
Confidence 357999999999999999999886 66655 678899999999999887654222111 0 0
Q ss_pred --CCCccccccc-cceeEEE--------------EeccC----ccccCCC--------------------CcccccccEE
Q 041855 89 --PFAKKDSYNE-WNYSKLR--------------FFFYP----ELSAAGN--------------------DKVLFNSGVM 127 (203)
Q Consensus 89 --p~~k~~~~~l-~~Y~rl~--------------Lfd~~----~~aA~~d--------------------~~~yfNsGvm 127 (203)
.+.|+..+.+ .+|+|++ ||+++ .++|+.+ ...+||||||
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~ 163 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVM 163 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEE
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEE
Confidence 0224445556 8999998 45432 1444444 1369999999
Q ss_pred EEeCCHHHHHHHHHHh----hcCC-CCCCChHhHHHHHhh-cCCCCCCcccceeeec-cCCCcccccCCceEEEEEec-C
Q 041855 128 VIEPSLCKFEDLMLKS----FQVS-SYNGGDQGFLNEVFT-WWHRLPKRINHLKVFS-KQDDKEHQVGDGLYAIHYLG-L 199 (203)
Q Consensus 128 vi~p~~~~~~~l~~~~----~~~~-~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~-~~~~~~~~~~~~~~IIHf~g-~ 199 (203)
+++++.+..+++.+.+ .... .+.++||++||.+|. ++..||.+||++.... ..........++++||||+| .
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~ 243 (250)
T PF01501_consen 164 LFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYGNIKPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPP 243 (250)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTTGEEEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS
T ss_pred EEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccceeEEECchhccccccccccchhhHhhcCCeEEEEeCCCC
Confidence 9999988777666554 3232 467899999999998 8999999999997543 00011133567899999999 8
Q ss_pred CCCC
Q 041855 200 KPWM 203 (203)
Q Consensus 200 KPW~ 203 (203)
|||.
T Consensus 244 KPW~ 247 (250)
T PF01501_consen 244 KPWK 247 (250)
T ss_dssp -TTS
T ss_pred cCCC
Confidence 9995
No 7
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.92 E-value=9.2e-26 Score=195.87 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=116.1
Q ss_pred eecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeEEEecccCC----CCCcccccccc--
Q 041855 31 LHSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKTKWISRIRS----PFAKKDSYNEW-- 99 (203)
Q Consensus 31 l~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v~~v~~i~~----p~~k~~~~~l~-- 99 (203)
+++|++|+.++.|++.||+++|++.++.+ ++++++|++.++.|++. +..+. +..++. .+.....|+.+
T Consensus 30 ~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~-~~~id~~~~~~~~~~~~~s~atY 108 (334)
T PRK15171 30 YGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRIN-IYLINCERLKSLPSTKNWTYATY 108 (334)
T ss_pred EECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEE-EEEeCHHHHhCCcccCcCCHHHH
Confidence 36799999999999999999988766655 55689999999888664 44332 222221 11111233322
Q ss_pred -----------ceeEEE--------------EeccC----ccccCC-CC------------------cccccccEEEEeC
Q 041855 100 -----------NYSKLR--------------FFFYP----ELSAAG-ND------------------KVLFNSGVMVIEP 131 (203)
Q Consensus 100 -----------~Y~rl~--------------Lfd~~----~~aA~~-d~------------------~~yfNsGvmvi~p 131 (203)
+++|++ ||+++ .++||. |. ..||||||||||.
T Consensus 109 ~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlliNl 188 (334)
T PRK15171 109 FRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFLLINI 188 (334)
T ss_pred HHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCccccccceecceEEEcH
Confidence 467775 55553 355552 21 1499999999999
Q ss_pred CHHHHHH----HHHHhhcC---CCCCCChHhHHHHHhh-cCCCCCCcccceeeeccC--CCcccccCCceEEEEEec-CC
Q 041855 132 SLCKFED----LMLKSFQV---SSYNGGDQGFLNEVFT-WWHRLPKRINHLKVFSKQ--DDKEHQVGDGLYAIHYLG-LK 200 (203)
Q Consensus 132 ~~~~~~~----l~~~~~~~---~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~~~--~~~~~~~~~~~~IIHf~g-~K 200 (203)
+.+..++ +++.+... ..+.++|||+||.+|. +|..||.+||++..+... .........+|+||||+| .|
T Consensus 189 ~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G~~K 268 (334)
T PRK15171 189 PAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAGKVKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIGPTK 268 (334)
T ss_pred HHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcCCeEECCHhhCCccchhHHHHhcccccccCCCEEEEECCCCC
Confidence 8876554 44544432 3567899999999998 899999999998643211 001122356899999999 79
Q ss_pred CCC
Q 041855 201 PWM 203 (203)
Q Consensus 201 PW~ 203 (203)
||+
T Consensus 269 PW~ 271 (334)
T PRK15171 269 PWH 271 (334)
T ss_pred CCC
Confidence 995
No 8
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=5e-24 Score=183.26 Aligned_cols=169 Identities=24% Similarity=0.323 Sum_probs=121.1
Q ss_pred ecCcchHHHHHHHHHHHHhhCCC--CcEEEEecCCCCHHHHHHHHHc----CCeE----EEecccCC-C-CCcccccc--
Q 041855 32 HSSEAYVCGAIALAESIIQKNSS--RDLVLLHDKSISGKSLRSLRAA----GWKT----KWISRIRS-P-FAKKDSYN-- 97 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~--~~lvvlv~~~v~~~~~~~L~~~----g~~v----~~v~~i~~-p-~~k~~~~~-- 97 (203)
+.|++|+.|++|.++||+.|+.. +.+.+++ +++++|+.++|++. +..+ +.++.+.. | .++ .|+
T Consensus 8 a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~-~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~--~~s~~ 84 (325)
T COG1442 8 AFDKNYLIPAGVSIYSLLEHNRKIFYKFHILV-DGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPPFTK--RFSKM 84 (325)
T ss_pred EcccccchhHHHHHHHHHHhCccccEEEEEEe-cCCCHHHHHHHHHHHHhhccceeeEEEechhhhccccccc--chHHH
Confidence 46999999999999999999984 5555565 68999999998865 3322 22332221 2 332 221
Q ss_pred ----------ccceeEEE--------------EeccC----ccccCCCC------------------cccccccEEEEeC
Q 041855 98 ----------EWNYSKLR--------------FFFYP----ELSAAGND------------------KVLFNSGVMVIEP 131 (203)
Q Consensus 98 ----------l~~Y~rl~--------------Lfd~~----~~aA~~d~------------------~~yfNsGvmvi~p 131 (203)
+.+|+|++ ||+++ .++||.|. +.|||||||++|.
T Consensus 85 v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~llinl 164 (325)
T COG1442 85 VLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVLLINL 164 (325)
T ss_pred HHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccceeeehH
Confidence 46778887 34333 25667662 4699999999999
Q ss_pred CHHHHHHHHH----Hhhc-CCCCCCChHhHHHHHhh-cCCCCCCcccceeeeccCCCc--ccccCCceEEEEEec-CCCC
Q 041855 132 SLCKFEDLML----KSFQ-VSSYNGGDQGFLNEVFT-WWHRLPKRINHLKVFSKQDDK--EHQVGDGLYAIHYLG-LKPW 202 (203)
Q Consensus 132 ~~~~~~~l~~----~~~~-~~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~~~~~~--~~~~~~~~~IIHf~g-~KPW 202 (203)
..|..+++.+ .+.. +..+..+|||+||.+|+ +|..||.+||++......... ......++.|+||+| .|||
T Consensus 165 ~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN~i~~~~~~~L~~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW 244 (325)
T COG1442 165 KLWREENIFEKLIELLKDKENDLLYPDQDILNMIFEDRVLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPW 244 (325)
T ss_pred HHHHHhhhHHHHHHHHhccccccCCccccHHHHHHHhhhhccCcccceeehhhhccchhhhccCCCCceEEEecCCCCCC
Confidence 9877665554 4433 34688899999999998 999999999999754332211 245678899999999 5999
Q ss_pred C
Q 041855 203 M 203 (203)
Q Consensus 203 ~ 203 (203)
+
T Consensus 245 ~ 245 (325)
T COG1442 245 H 245 (325)
T ss_pred c
Confidence 6
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.89 E-value=3.6e-23 Score=175.59 Aligned_cols=175 Identities=16% Similarity=0.094 Sum_probs=113.1
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeEE--EecccCCCC-------
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKTK--WISRIRSPF------- 90 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v~--~v~~i~~p~------- 90 (203)
.|+|+ ++ ++|++.+.++++||.+++ +.++.+ +++++++++.++.|.+. +.++. .++.....+
T Consensus 3 ~~iv~--~~-~~y~~~~~~~i~Sil~n~-~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~ 78 (280)
T cd06431 3 VAIVC--AG-YNASRDVVTLVKSVLFYR-RNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKH 78 (280)
T ss_pred EEEEE--cc-CCcHHHHHHHHHHHHHcC-CCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccc
Confidence 45555 45 899999999999999986 555666 56788999999888754 44443 222111111
Q ss_pred -Ccccc-cc------cc-ceeEEE--------------Eecc-----C-cc-ccCCCC------------------cccc
Q 041855 91 -AKKDS-YN------EW-NYSKLR--------------FFFY-----P-EL-SAAGND------------------KVLF 122 (203)
Q Consensus 91 -~k~~~-~~------l~-~Y~rl~--------------Lfd~-----~-~~-aA~~d~------------------~~yf 122 (203)
+.... .+ +. +++|++ ||++ + .+ ||++|. +.||
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~yF 158 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGF 158 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcccccce
Confidence 11100 11 22 578886 6654 1 12 333321 2499
Q ss_pred cccEEEEeCCHHHHHHHHHHh----hc----CCCCCCChHhHHHHHhh-c---CCCCCCcccceeeeccCCCcccccCCc
Q 041855 123 NSGVMVIEPSLCKFEDLMLKS----FQ----VSSYNGGDQGFLNEVFT-W---WHRLPKRINHLKVFSKQDDKEHQVGDG 190 (203)
Q Consensus 123 NsGvmvi~p~~~~~~~l~~~~----~~----~~~~~~~DQd~LN~~f~-~---w~~Lp~~yN~~~~~~~~~~~~~~~~~~ 190 (203)
|||||++|.+++..+++.+.+ .+ .....++|||+||.+|. + |..||.+||+|...............+
T Consensus 159 NsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~ 238 (280)
T cd06431 159 NTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSD 238 (280)
T ss_pred eeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCccccccCccchHhHhhcCcCC
Confidence 999999999987665554432 22 23567899999999997 6 678999999986421111000123568
Q ss_pred eEEEEEec-CCCCC
Q 041855 191 LYAIHYLG-LKPWM 203 (203)
Q Consensus 191 ~~IIHf~g-~KPW~ 203 (203)
|+||||+| .|||.
T Consensus 239 p~IIHf~g~~KPW~ 252 (280)
T cd06431 239 LKVIHWNSPKKLRV 252 (280)
T ss_pred CEEEEeCCCCCCCC
Confidence 99999999 79994
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.86 E-value=4.7e-22 Score=166.83 Aligned_cols=165 Identities=15% Similarity=0.053 Sum_probs=106.9
Q ss_pred cCcchHHHHHHHHHHHHhhCCC-CcEEE-EecCCCCHHHHHHHHHc----CCe--EEEecccC---CCC-----------
Q 041855 33 SSEAYVCGAIALAESIIQKNSS-RDLVL-LHDKSISGKSLRSLRAA----GWK--TKWISRIR---SPF----------- 90 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~-~~lvv-lv~~~v~~~~~~~L~~~----g~~--v~~v~~i~---~p~----------- 90 (203)
+| +|+ ++.+.+.|+..+|++ .++++ +++++++.+..+.+.+. +.+ +..++... ...
T Consensus 7 ~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 84 (257)
T cd06429 7 SD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLESEA 84 (257)
T ss_pred ec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhhccc
Confidence 36 899 566666677676655 88888 77899999888888654 223 23332110 000
Q ss_pred -------Ccccccc------------ccceeEEE--------------EeccC----ccccCCCCcccccccEEEEeCCH
Q 041855 91 -------AKKDSYN------------EWNYSKLR--------------FFFYP----ELSAAGNDKVLFNSGVMVIEPSL 133 (203)
Q Consensus 91 -------~k~~~~~------------l~~Y~rl~--------------Lfd~~----~~aA~~d~~~yfNsGvmvi~p~~ 133 (203)
...+.|+ +.+++|++ ||+++ .++|++| |||||||||++++
T Consensus 85 ~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---yfNsGV~linl~~ 161 (257)
T cd06429 85 DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---SWNPGVNVVNLTE 161 (257)
T ss_pred cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh---hcccceEEEeHHH
Confidence 0112332 23567776 55554 2456666 9999999999998
Q ss_pred HHHHHH----HHHhhcCC-----CCCCChHhHHHHHhh-cCCCCCCcccceeeeccCCCcccccCCceEEEEEec-CCCC
Q 041855 134 CKFEDL----MLKSFQVS-----SYNGGDQGFLNEVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202 (203)
Q Consensus 134 ~~~~~l----~~~~~~~~-----~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~~IIHf~g-~KPW 202 (203)
+..+++ ++.+.+.. ..+++|||+||..|. +|..||.+||++.... .........++++||||+| .|||
T Consensus 162 wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~wN~~~l~~-~~~~~~~~~~~~~IIHy~G~~KPW 240 (257)
T cd06429 162 WRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSWHVRGLGY-NYGIRPQDIKAAAVLHFNGNMKPW 240 (257)
T ss_pred HHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChHHcccCCcc-cccccccccCCcEEEEECCCCCCc
Confidence 765554 44443321 146689999999997 9999999999973211 1100122456899999999 7999
Q ss_pred C
Q 041855 203 M 203 (203)
Q Consensus 203 ~ 203 (203)
+
T Consensus 241 ~ 241 (257)
T cd06429 241 L 241 (257)
T ss_pred C
Confidence 5
No 11
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.72 E-value=1.9e-17 Score=138.46 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=108.4
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeE--EEecc-c--C-CCCCccccc--c-
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKT--KWISR-I--R-SPFAKKDSY--N- 97 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v--~~v~~-i--~-~p~~k~~~~--~- 97 (203)
++++.|+.++.|++.||.+|+ +.++.+ ++++++|++.++.|++. +.++ +.++. . . .+......| .
T Consensus 7 ~~~~~y~~~~~v~l~Sll~nn-~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~r 85 (248)
T cd06432 7 ASGHLYERFLRIMMLSVMKNT-KSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKI 85 (248)
T ss_pred cCcHHHHHHHHHHHHHHHHcC-CCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHH
Confidence 678999999999999999986 345554 44578999999888764 4433 33331 1 1 111111112 1
Q ss_pred ------cc-ceeEEE--------------EeccC----ccccCCCC-----------------------cccccccEEEE
Q 041855 98 ------EW-NYSKLR--------------FFFYP----ELSAAGND-----------------------KVLFNSGVMVI 129 (203)
Q Consensus 98 ------l~-~Y~rl~--------------Lfd~~----~~aA~~d~-----------------------~~yfNsGvmvi 129 (203)
+. +++|++ ||+++ .+||++|. ..|||||||+|
T Consensus 86 L~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmli 165 (248)
T cd06432 86 LFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVV 165 (248)
T ss_pred HHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEE
Confidence 22 578887 55553 24555431 12999999999
Q ss_pred eCCHHHHHHHHH----Hhh---cC-CCCCCChHhHHHHHhh--cCCCCCCcccceeeeccCCCcccccCCceEEEEEec
Q 041855 130 EPSLCKFEDLML----KSF---QV-SSYNGGDQGFLNEVFT--WWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLG 198 (203)
Q Consensus 130 ~p~~~~~~~l~~----~~~---~~-~~~~~~DQd~LN~~f~--~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~~IIHf~g 198 (203)
|..++..+++.+ .++ ++ .++.++|||+||.++. ++..||.+||++..+-. .+.++.+++|||..
T Consensus 166 NL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~~i~~Lp~~w~~~~~~~~-----~~~~~~~~~~~~~~ 239 (248)
T cd06432 166 DLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCS-----DESKKKAKTIDLCN 239 (248)
T ss_pred eHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccCCeEECChHHHHHHHHhc-----ccccCccceeeccc
Confidence 999877665544 222 22 3578899999999995 49999999999864422 12478899999985
No 12
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.70 E-value=6.3e-17 Score=138.07 Aligned_cols=169 Identities=16% Similarity=0.157 Sum_probs=106.8
Q ss_pred EEEeecCcchHHHHHHHHHHHHhhCCCCcEE--EEecCCCCHHHHHHHHHc---CCeEE--EecccCCCCCcccccc---
Q 041855 28 VTILHSSEAYVCGAIALAESIIQKNSSRDLV--LLHDKSISGKSLRSLRAA---GWKTK--WISRIRSPFAKKDSYN--- 97 (203)
Q Consensus 28 vT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lv--vlv~~~v~~~~~~~L~~~---g~~v~--~v~~i~~p~~k~~~~~--- 97 (203)
++++++++. +..+.++++|+..++ ..++. |+..+.++++.++.|++. +...+ .+.++.-|-++...|+
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~~n-~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIVFS-QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHHhC-CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 344455555 899999999998876 45554 455545888888878765 22223 3444443322211111
Q ss_pred -------------ccceeEEE--------------Eecc----C--ccccC-CCCc------------------cccccc
Q 041855 98 -------------EWNYSKLR--------------FFFY----P--ELSAA-GNDK------------------VLFNSG 125 (203)
Q Consensus 98 -------------l~~Y~rl~--------------Lfd~----~--~~aA~-~d~~------------------~yfNsG 125 (203)
+.+++|++ ||++ + .++|+ ++.. .+||||
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gFNSG 160 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGVNSG 160 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCcccccccccc
Confidence 23567776 5544 2 24443 4310 259999
Q ss_pred EEEEeCCHHHH---------------HHHHHHhhcC-CCCCCChHhHHHHHhh-c---CCCCCCcccceeeec-cCCCcc
Q 041855 126 VMVIEPSLCKF---------------EDLMLKSFQV-SSYNGGDQGFLNEVFT-W---WHRLPKRINHLKVFS-KQDDKE 184 (203)
Q Consensus 126 vmvi~p~~~~~---------------~~l~~~~~~~-~~~~~~DQd~LN~~f~-~---w~~Lp~~yN~~~~~~-~~~~~~ 184 (203)
||++|.+.+.. +++++.+.+. ..+.++|||+||.+|. . +..||.+||++.... .....+
T Consensus 161 VmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~ 240 (304)
T cd06430 161 VMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCK 240 (304)
T ss_pred eeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHHHHHHcCCCCeEEEcCccccCCccceeeccccc
Confidence 99999987664 3456666554 3578899999999998 4 678999999886321 111122
Q ss_pred cccCCceEEEEEec
Q 041855 185 HQVGDGLYAIHYLG 198 (203)
Q Consensus 185 ~~~~~~~~IIHf~g 198 (203)
......++|||..+
T Consensus 241 ~~~~~~~~~~H~n~ 254 (304)
T cd06430 241 AAEEEGVFILHGNR 254 (304)
T ss_pred ccccccceEEEcCC
Confidence 33456899999986
No 13
>PLN02718 Probable galacturonosyltransferase
Probab=99.66 E-value=8e-17 Score=146.39 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=107.0
Q ss_pred CcchHHHHHHHHHHHHhh-CCCCcEEE-EecCCCCHHHHHHHHHcC----Ce--EEEecccCC-C--C---------Ccc
Q 041855 34 SEAYVCGAIALAESIIQK-NSSRDLVL-LHDKSISGKSLRSLRAAG----WK--TKWISRIRS-P--F---------AKK 93 (203)
Q Consensus 34 d~~Y~~~~~vl~~SL~~~-~~~~~lvv-lv~~~v~~~~~~~L~~~g----~~--v~~v~~i~~-p--~---------~k~ 93 (203)
+|+|+ ++.|.+.|+..| +.+..+++ +++++++.+..+.+.... .+ ++.++.... | + .+.
T Consensus 320 sDNvl-aasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~ 398 (603)
T PLN02718 320 SDNVL-ACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSHDP 398 (603)
T ss_pred cCCce-eEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhcccccc
Confidence 45574 999999999997 34447777 778999999988776542 22 233332110 0 0 111
Q ss_pred ccccc------------cceeEEE--------------EeccC---c-cccCCCC-------------------------
Q 041855 94 DSYNE------------WNYSKLR--------------FFFYP---E-LSAAGND------------------------- 118 (203)
Q Consensus 94 ~~~~l------------~~Y~rl~--------------Lfd~~---~-~aA~~d~------------------------- 118 (203)
..|+. .+++|++ ||+++ . .+||.|.
T Consensus 399 ~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~f 478 (603)
T PLN02718 399 RYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKF 478 (603)
T ss_pred ccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhccc
Confidence 22322 2456665 55543 1 2333321
Q ss_pred ---cccccccEEEEeCCHHHHHHHHH----HhhcCCCCCCChHhHHH---HHhh-cCCCCCCcccceeeeccCCCccccc
Q 041855 119 ---KVLFNSGVMVIEPSLCKFEDLML----KSFQVSSYNGGDQGFLN---EVFT-WWHRLPKRINHLKVFSKQDDKEHQV 187 (203)
Q Consensus 119 ---~~yfNsGvmvi~p~~~~~~~l~~----~~~~~~~~~~~DQd~LN---~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~ 187 (203)
..|||+|||||+...|..+++.+ .++.+..-...|||.|| ..|. +|..||.+||.+..... .......
T Consensus 479 n~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF~gri~~LD~rWNv~gLG~~-~~i~~~~ 557 (603)
T PLN02718 479 DPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYNQTVALDKRWHVLGLGHE-SGVGASD 557 (603)
T ss_pred CCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHhcCceeecChHHhccCcccc-ccccccc
Confidence 23689999999999887765554 44444333568999998 7886 89999999998752211 1111235
Q ss_pred CCceEEEEEec-CCCCC
Q 041855 188 GDGLYAIHYLG-LKPWM 203 (203)
Q Consensus 188 ~~~~~IIHf~g-~KPW~ 203 (203)
.++++||||.| .|||.
T Consensus 558 i~~aaIIHYnG~~KPWl 574 (603)
T PLN02718 558 IEQAAVIHYDGVMKPWL 574 (603)
T ss_pred cCCCEEEEECCCCCccc
Confidence 67899999999 79994
No 14
>PLN02523 galacturonosyltransferase
Probab=99.54 E-value=1.2e-14 Score=130.96 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=113.2
Q ss_pred CCCeEEEEEeecCcchHHHHHHHHHHHHhh-CCCCcEEE-EecCCCCHHHHHHHHHcC----Ce--EEEecccC--C---
Q 041855 22 HQREAYVTILHSSEAYVCGAIALAESIIQK-NSSRDLVL-LHDKSISGKSLRSLRAAG----WK--TKWISRIR--S--- 88 (203)
Q Consensus 22 ~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-~~~~~lvv-lv~~~v~~~~~~~L~~~g----~~--v~~v~~i~--~--- 88 (203)
++-+=||.+ +| + +.++.|.+.|+..| +.+..+|+ ++|++++....+.+-... .. +..|+... +
T Consensus 246 p~l~Hy~if--Sd-N-vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~ 321 (559)
T PLN02523 246 PSLYHYAIF--SD-N-VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSY 321 (559)
T ss_pred CCcceEEEe--cC-c-chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhccccc
Confidence 344456654 34 3 99999999999997 66677888 789999988777764432 22 23444210 1
Q ss_pred -CC--------------C-------------c---ccccc------------ccceeEEE--------------EeccC-
Q 041855 89 -PF--------------A-------------K---KDSYN------------EWNYSKLR--------------FFFYP- 110 (203)
Q Consensus 89 -p~--------------~-------------k---~~~~~------------l~~Y~rl~--------------Lfd~~- 110 (203)
|. . | ...++ +.+++|++ ||+++
T Consensus 322 ~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL 401 (559)
T PLN02523 322 VPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDM 401 (559)
T ss_pred chHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHhCcC
Confidence 10 0 0 01111 13456765 56554
Q ss_pred --c-cccCCCC------------------cccccc-------cEEEEeCCHHHHHHHHHHhh----cCCCCCCChHhHHH
Q 041855 111 --E-LSAAGND------------------KVLFNS-------GVMVIEPSLCKFEDLMLKSF----QVSSYNGGDQGFLN 158 (203)
Q Consensus 111 --~-~aA~~d~------------------~~yfNs-------Gvmvi~p~~~~~~~l~~~~~----~~~~~~~~DQd~LN 158 (203)
. .+||.|. ..|||+ ||||||.+.|..+++.+... .+......|||.||
T Consensus 402 ~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~DqdaLp 481 (559)
T PLN02523 402 DGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLGTLP 481 (559)
T ss_pred CCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccccccccccc
Confidence 1 3455442 136776 99999999998887776543 23345678999996
Q ss_pred ---HHhh-cCCCCCCcccceeeeccCCCcccccCCceEEEEEec-CCCCC
Q 041855 159 ---EVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPWM 203 (203)
Q Consensus 159 ---~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~~IIHf~g-~KPW~ 203 (203)
..|. +|..|+.+||++.... .........++++||||.| .|||.
T Consensus 482 p~LivF~gri~~LD~rWNvlglGy-~~~i~~~~i~~paIIHYnG~~KPWl 530 (559)
T PLN02523 482 PGLITFYSTTKPLDKSWHVLGLGY-NPSISMDEIRNAAVIHFNGNMKPWL 530 (559)
T ss_pred hHHHHhcCceEecCchhhccCCcc-CCCccccccCCCEEEEECCCCCccc
Confidence 6776 9999999999875221 1111233557899999999 79994
No 15
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=8.4e-15 Score=123.13 Aligned_cols=151 Identities=25% Similarity=0.291 Sum_probs=105.8
Q ss_pred CeEEEEEeecCcchHHHHHHHHHHHHhhC-CCCcEEE-EecCCCCHHHHHHHHHcCCeEEEecccCC-------------
Q 041855 24 REAYVTILHSSEAYVCGAIALAESIIQKN-SSRDLVL-LHDKSISGKSLRSLRAAGWKTKWISRIRS------------- 88 (203)
Q Consensus 24 ~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~-~~~~lvv-lv~~~v~~~~~~~L~~~g~~v~~v~~i~~------------- 88 (203)
+.|+++..+-.|-|+..++++..-|...+ ++..+|. |.-.++.+...+.|+..|..+..|+.|+.
T Consensus 70 ~~al~n~~t~~d~y~N~Tr~lv~~Lk~~~etkaKlV~vL~mkg~d~wk~d~l~ldga~~~~vq~i~~hevv~~~~di~~~ 149 (368)
T COG5597 70 DYALGNRATLRDIYLNRTRALVVVLKTGGETKAKLVEVLTMKGCDLWKTDLLPLDGAFNARVQRINVHEVVPFTKDIKPD 149 (368)
T ss_pred cccccchhhhhceeecccceehhhhhhcCcchhheeeehhhcccchhhhhccccchHHHHHhccchHhhhhhhhhccCcC
Confidence 56666643223566667888888887764 3445544 56688898888888877765544444321
Q ss_pred ------CCCccccccccceeEEE--------------EeccC--ccccCCC-----------------------------
Q 041855 89 ------PFAKKDSYNEWNYSKLR--------------FFFYP--ELSAAGN----------------------------- 117 (203)
Q Consensus 89 ------p~~k~~~~~l~~Y~rl~--------------Lfd~~--~~aA~~d----------------------------- 117 (203)
.|+|+..|.+++|+||+ ||+.| +++|+||
T Consensus 150 ~~rw~~mftKLrVfeqtEyDRvifLDsDaivlknmDklFd~Pvyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~ 229 (368)
T COG5597 150 FHRWLDMFTKLRVFEQTEYDRVIFLDSDAIVLKNMDKLFDYPVYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKM 229 (368)
T ss_pred cCcHHHHhHHHHhhhhhhhceEEEeccchHHhhhhHHHhcchhhhhccCCchhhCHHHhcCCCCccceeecHHHHhhccc
Confidence 26789999999999997 77765 3333332
Q ss_pred ---------------C----------cccccccEEEEeCCHHHHHHHHHHhhc--CCCCCCChHhHHHHHhh-----cCC
Q 041855 118 ---------------D----------KVLFNSGVMVIEPSLCKFEDLMLKSFQ--VSSYNGGDQGFLNEVFT-----WWH 165 (203)
Q Consensus 118 ---------------~----------~~yfNsGvmvi~p~~~~~~~l~~~~~~--~~~~~~~DQd~LN~~f~-----~w~ 165 (203)
. +.+||||+||++|++..+.+++..+-- ....+.-+|.++|..++ .|.
T Consensus 230 r~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~alPklydda~mmeqsllnlaYn~~g~FPwe 309 (368)
T COG5597 230 RAALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFALPKLYDDADMMEQSLLNLAYNYEGFFPWE 309 (368)
T ss_pred HhhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHhhhccCchh
Confidence 0 248999999999999999998887621 11223458999999986 588
Q ss_pred CCCCcccce
Q 041855 166 RLPKRINHL 174 (203)
Q Consensus 166 ~Lp~~yN~~ 174 (203)
+++.+||..
T Consensus 310 rld~~yNG~ 318 (368)
T COG5597 310 RLDPRYNGY 318 (368)
T ss_pred hcCcccccc
Confidence 999999954
No 16
>PLN02867 Probable galacturonosyltransferase
Probab=99.42 E-value=6.3e-14 Score=126.33 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=59.9
Q ss_pred cccccEEEEeCCHHHHHHHHHH----hhcCC--CCCCChHhHHHH---Hhh-cCCCCCCcccceeeeccCCCcccccCCc
Q 041855 121 LFNSGVMVIEPSLCKFEDLMLK----SFQVS--SYNGGDQGFLNE---VFT-WWHRLPKRINHLKVFSKQDDKEHQVGDG 190 (203)
Q Consensus 121 yfNsGvmvi~p~~~~~~~l~~~----~~~~~--~~~~~DQd~LN~---~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~ 190 (203)
||||||||||.+.|..+++.+. ++.+. .....|||.||. +|. +|..||.+||++..............++
T Consensus 413 YFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~ 492 (535)
T PLN02867 413 AWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILES 492 (535)
T ss_pred ceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCC
Confidence 7889999999999887777554 34332 245689999995 776 8999999999953111111011234578
Q ss_pred eEEEEEec-CCCCC
Q 041855 191 LYAIHYLG-LKPWM 203 (203)
Q Consensus 191 ~~IIHf~g-~KPW~ 203 (203)
++||||+| .|||+
T Consensus 493 paIIHYnG~~KPW~ 506 (535)
T PLN02867 493 AAVLHFSGPAKPWL 506 (535)
T ss_pred cEEEEECCCCCccc
Confidence 99999999 79995
No 17
>PLN02742 Probable galacturonosyltransferase
Probab=99.30 E-value=3.1e-12 Score=115.36 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=61.1
Q ss_pred ccccccEEEEeCCHHHHHHHHHHh----hcCCCCCCChHhHHHHH---hh-cCCCCCCcccceeeeccCCCcccccCCce
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLKS----FQVSSYNGGDQGFLNEV---FT-WWHRLPKRINHLKVFSKQDDKEHQVGDGL 191 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~~----~~~~~~~~~DQd~LN~~---f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~ 191 (203)
.+||+|||||+...|..+++.+.. +.+......|||.||.. |. .|..||.+||....-. .........+++
T Consensus 415 C~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF~g~~~~LD~rWNv~gLG~-~~~v~~~~i~~a 493 (534)
T PLN02742 415 CGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHVLGLGY-DTNIDPRLIESA 493 (534)
T ss_pred cccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHHcCcceecChhheeccccc-ccccchhhccCC
Confidence 489999999999998877666543 23444566899999964 65 8999999999974211 111112367789
Q ss_pred EEEEEec-CCCCC
Q 041855 192 YAIHYLG-LKPWM 203 (203)
Q Consensus 192 ~IIHf~g-~KPW~ 203 (203)
+||||.| .|||.
T Consensus 494 aILHynG~~KPWl 506 (534)
T PLN02742 494 AVLHFNGNMKPWL 506 (534)
T ss_pred eEEEECCCCCccc
Confidence 9999999 79994
No 18
>PLN02659 Probable galacturonosyltransferase
Probab=99.24 E-value=5.4e-12 Score=113.62 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=59.3
Q ss_pred cccccEEEEeCCHHHHHHH----HHHhhcC--CCCCCChHhHH---HHHhh-cCCCCCCcccceeeeccCCCcccccCCc
Q 041855 121 LFNSGVMVIEPSLCKFEDL----MLKSFQV--SSYNGGDQGFL---NEVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDG 190 (203)
Q Consensus 121 yfNsGvmvi~p~~~~~~~l----~~~~~~~--~~~~~~DQd~L---N~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~ 190 (203)
|||+|||+||.+.|..+++ ++.++++ ......|||+| |..|. +|..||.+||++..-.. ........++
T Consensus 412 YfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~-~~~~~~~i~~ 490 (534)
T PLN02659 412 AWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ-ENTSLADAES 490 (534)
T ss_pred ceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCccc-ccccccccCC
Confidence 7889999999998875555 4444443 23567899999 57787 89999999998642111 1001224578
Q ss_pred eEEEEEec-CCCCC
Q 041855 191 LYAIHYLG-LKPWM 203 (203)
Q Consensus 191 ~~IIHf~g-~KPW~ 203 (203)
++||||+| .|||+
T Consensus 491 paIIHYnG~~KPW~ 504 (534)
T PLN02659 491 AGVVHFNGRAKPWL 504 (534)
T ss_pred cEEEEECCCCCccc
Confidence 99999999 79995
No 19
>PLN02870 Probable galacturonosyltransferase
Probab=99.22 E-value=3.6e-12 Score=114.73 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=59.6
Q ss_pred cccccEEEEeCCHHHHHHHHH----HhhcC--CCCCCChHhHH---HHHhh-cCCCCCCcccceeeeccCCCcccccCCc
Q 041855 121 LFNSGVMVIEPSLCKFEDLML----KSFQV--SSYNGGDQGFL---NEVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDG 190 (203)
Q Consensus 121 yfNsGvmvi~p~~~~~~~l~~----~~~~~--~~~~~~DQd~L---N~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~ 190 (203)
||||||||||.+.|..+++.+ .++++ ..+...|||.| |..|. +|..||.+||++..-.. ........++
T Consensus 411 yfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~-~~~~~~~i~~ 489 (533)
T PLN02870 411 AWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQ-SKTNIESVKK 489 (533)
T ss_pred eeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCc-ccccccccCC
Confidence 566999999999887665554 44433 24677999999 57886 89999999998642111 1112245678
Q ss_pred eEEEEEec-CCCCC
Q 041855 191 LYAIHYLG-LKPWM 203 (203)
Q Consensus 191 ~~IIHf~g-~KPW~ 203 (203)
++||||+| .|||.
T Consensus 490 aaIIHY~G~~KPW~ 503 (533)
T PLN02870 490 AAVIHYNGQSKPWL 503 (533)
T ss_pred cEEEEECCCCCCcc
Confidence 99999999 79995
No 20
>PLN02829 Probable galacturonosyltransferase
Probab=99.15 E-value=2e-11 Score=111.47 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=59.5
Q ss_pred ccccccEEEEeCCHHHHHHHHH----HhhcCCCCCCChHhHHHHH---hh-cCCCCCCcccceeeeccCCCcccccCCce
Q 041855 120 VLFNSGVMVIEPSLCKFEDLML----KSFQVSSYNGGDQGFLNEV---FT-WWHRLPKRINHLKVFSKQDDKEHQVGDGL 191 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~----~~~~~~~~~~~DQd~LN~~---f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~ 191 (203)
.|||+||||||.+.|..+++.+ .+..+..-...|||.||.. |. ++..|+.+||+...-. .........+++
T Consensus 519 CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g~i~~LD~rWNv~GLGy-~~~v~~~~i~~a 597 (639)
T PLN02829 519 CGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRTYPLDRSWHVLGLGY-NPNVNQRDIERA 597 (639)
T ss_pred cceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcCceEecChhheecCCCC-CcccchhcccCC
Confidence 4799999999999988776544 3333322234899999975 34 8999999999986322 111123467789
Q ss_pred EEEEEec-CCCCC
Q 041855 192 YAIHYLG-LKPWM 203 (203)
Q Consensus 192 ~IIHf~g-~KPW~ 203 (203)
+||||.| .|||.
T Consensus 598 aIIHynG~~KPWl 610 (639)
T PLN02829 598 AVIHYNGNMKPWL 610 (639)
T ss_pred eEEEECCCCCccc
Confidence 9999999 79994
No 21
>PLN02769 Probable galacturonosyltransferase
Probab=99.07 E-value=1.1e-10 Score=107.26 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=58.3
Q ss_pred ccccccEEEEeCCHHHHHHHHHH----hhc---C--CCCCCChHhHHHHHhh-cCCCCCCcccceee-eccCCCcccccC
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLK----SFQ---V--SSYNGGDQGFLNEVFT-WWHRLPKRINHLKV-FSKQDDKEHQVG 188 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~----~~~---~--~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~-~~~~~~~~~~~~ 188 (203)
.|||+||||||.+.|..+++.+. +.. . ...+.++|+.+|.+|. +|..||.+||++.. +.... .....
T Consensus 508 CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i--~~~~i 585 (629)
T PLN02769 508 CAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGI--DEQAI 585 (629)
T ss_pred cccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcCeEEECCHHHccccccccccc--ccccc
Confidence 37899999999998876654442 222 1 1345578888898997 89999999998741 11111 12346
Q ss_pred CceEEEEEec-CCCCC
Q 041855 189 DGLYAIHYLG-LKPWM 203 (203)
Q Consensus 189 ~~~~IIHf~g-~KPW~ 203 (203)
++++||||.| .|||.
T Consensus 586 ~~paIIHYnG~~KPW~ 601 (629)
T PLN02769 586 KKAAVLHYNGNMKPWL 601 (629)
T ss_pred CCcEEEEECCCCCCcc
Confidence 7899999999 79995
No 22
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.04 E-value=1.2e-10 Score=106.35 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=60.7
Q ss_pred cccccEEEEeCCHHHHHHHHHHhh----cCCCCCCChHhHHH---HHhh-cCCCCCCcccceeeeccCCCcccccCCceE
Q 041855 121 LFNSGVMVIEPSLCKFEDLMLKSF----QVSSYNGGDQGFLN---EVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDGLY 192 (203)
Q Consensus 121 yfNsGvmvi~p~~~~~~~l~~~~~----~~~~~~~~DQd~LN---~~f~-~w~~Lp~~yN~~~~~~~~~~~~~~~~~~~~ 192 (203)
|||+|||||+.+.|..+++.+... .+......|||.|| ..|. .+..|+.+||....... ........++++
T Consensus 538 yfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GLGyd-~~v~~~~i~~AA 616 (657)
T PLN02910 538 GWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYD-PALNQTEIENAA 616 (657)
T ss_pred eeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChHHHHHhCceeecCchheecCCCCC-cccccccccCcE
Confidence 566799999999988777665432 24456778999999 4665 89999999999853221 111123667899
Q ss_pred EEEEec-CCCCC
Q 041855 193 AIHYLG-LKPWM 203 (203)
Q Consensus 193 IIHf~g-~KPW~ 203 (203)
||||.| .|||.
T Consensus 617 VLHynG~~KPWl 628 (657)
T PLN02910 617 VVHYNGNYKPWL 628 (657)
T ss_pred EEEeCCCCCccc
Confidence 999999 79994
No 23
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=98.89 E-value=5.5e-10 Score=98.47 Aligned_cols=178 Identities=39% Similarity=0.518 Sum_probs=113.9
Q ss_pred CCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCC-------------
Q 041855 22 HQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRS------------- 88 (203)
Q Consensus 22 ~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~------------- 88 (203)
+.+.++++++.+.--+..+..+...+.+...+..+++.+..+.+... .+.+.|..+..++.++.
T Consensus 74 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~a~i~~~~~i~~~~~~~~~~~v~~~ 150 (369)
T KOG1950|consen 74 PKREAYVSLLASRVLFKDLDIVIPQSIKSKYSSADLVLLRDDKIKIW---RLIEDGAAIYLVDDIQRFRNDDANFDVPNE 150 (369)
T ss_pred ccchhheeeecceeEEEeeeeccCccccccccceeEEeecccceeec---ceeccCceEEEecchhhccCccccccccch
Confidence 34566666665555555666666666655554555544432222222 24444555444444432
Q ss_pred -CCCccccccccceeEEEEecc---------------CccccCCCCcccccccEEEEeCCHHHHHHHHHHhhcCCCCCCC
Q 041855 89 -PFAKKDSYNEWNYSKLRFFFY---------------PELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGG 152 (203)
Q Consensus 89 -p~~k~~~~~l~~Y~rl~Lfd~---------------~~~aA~~d~~~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~~~ 152 (203)
++.+..+|.+..|++++.||. +.+++.+.....||+|.|++.|+...+..+.+.......+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~~n~~~~v~~ps~~~~~~~~~~~~~~~~~~~~ 230 (369)
T KOG1950|consen 151 LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLIFNSGLLVFEPSLCNYKDLMEFSEEFESYNGA 230 (369)
T ss_pred hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccceeccCccccCCCccchhhHHHhhcccCCCCCc
Confidence 123555677777777764433 3455665556679999999999999999988888888889999
Q ss_pred hHhHHHHHhhcCC-CCCCcccceee-eccCCCccc---ccCCceEEEEEec-CCCC
Q 041855 153 DQGFLNEVFTWWH-RLPKRINHLKV-FSKQDDKEH---QVGDGLYAIHYLG-LKPW 202 (203)
Q Consensus 153 DQd~LN~~f~~w~-~Lp~~yN~~~~-~~~~~~~~~---~~~~~~~IIHf~g-~KPW 202 (203)
|||++|.+|..|. +.|..+|.... .|.+..... ...-....+||.| .|||
T Consensus 231 ~q~~l~~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~~~~~~~~y~~~~~p~ 286 (369)
T KOG1950|consen 231 DQGFLHLIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASSVLRYALHYLGANKPE 286 (369)
T ss_pred cchhhHHHhhcccCCCcccccccccccccCccccchhhcccccchhhhccccCCCC
Confidence 9999999999776 88888998764 344331111 1222345669999 5887
No 24
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=94.95 E-value=0.058 Score=48.07 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred ccccccEEEEeCCHHHHHHHHHHh--------------------hcCCCCCCChHhHHHHHhh----cCC---CCCCccc
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLKS--------------------FQVSSYNGGDQGFLNEVFT----WWH---RLPKRIN 172 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~~--------------------~~~~~~~~~DQd~LN~~f~----~w~---~Lp~~yN 172 (203)
...|+|+|+|+.+.|..+=|-..+ ...+.+...||..|-.++. +|. .|-..|-
T Consensus 243 ~GLNtGsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~le~~y~ 322 (429)
T PLN03182 243 IGLNTGSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYLENSYY 322 (429)
T ss_pred CccceeeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEEeecce
Confidence 489999999999876544332211 1122456689999999984 463 5666676
Q ss_pred ceeeeccCC--Ccc---------cccCCceEEEEEecCCCC
Q 041855 173 HLKVFSKQD--DKE---------HQVGDGLYAIHYLGLKPW 202 (203)
Q Consensus 173 ~~~~~~~~~--~~~---------~~~~~~~~IIHf~g~KPW 202 (203)
+..+ |..- .++ .-...-|.|.||+|.||-
T Consensus 323 l~Gy-w~~iv~~yee~~~~~~~g~gd~rwPfvtHF~GckpC 362 (429)
T PLN03182 323 LHGY-WVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVGCKPC 362 (429)
T ss_pred eccc-cHHHHHHHHHHHHhcCCCCCCcccceeEeeccceec
Confidence 6543 2211 011 113345899999999985
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=93.00 E-value=1.1 Score=37.80 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHHHhhCCCCcEEEEec--CCCCHHHHHHHHH-cCCeEEEecccCCC------CC------ccccccc
Q 041855 34 SEAYVCGAIALAESIIQKNSSRDLVLLHD--KSISGKSLRSLRA-AGWKTKWISRIRSP------FA------KKDSYNE 98 (203)
Q Consensus 34 d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~--~~v~~~~~~~L~~-~g~~v~~v~~i~~p------~~------k~~~~~l 98 (203)
.+.|+..+..+++.||+.+++.|+-|++. ++++++.++.|.. .....+.+..+..+ +. |.-+.-.
T Consensus 9 g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~~~~~~~~K~lA~l~ 88 (271)
T PF11051_consen 9 GDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSFSKKGFQNKWLALLF 88 (271)
T ss_pred cCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeeccccccccccCCchhhhhhhhh
Confidence 45899999999999999999999999875 7999999999886 22222222222111 11 1112224
Q ss_pred cceeEEEEeccCccccCC-----CCcccccccEEEE-eCC
Q 041855 99 WNYSKLRFFFYPELSAAG-----NDKVLFNSGVMVI-EPS 132 (203)
Q Consensus 99 ~~Y~rl~Lfd~~~~aA~~-----d~~~yfNsGvmvi-~p~ 132 (203)
..|+.++|.|.|.+.-.+ +...|-.+|.+.. +|+
T Consensus 89 ssFeevllLDaD~vpl~~p~~lF~~~~yk~tG~lfw~dpd 128 (271)
T PF11051_consen 89 SSFEEVLLLDADNVPLVDPEKLFESEEYKKTGALFWRDPD 128 (271)
T ss_pred CCcceEEEEcCCcccccCHHHHhcCccccccCEEEECCCc
Confidence 788899888887654332 2345778897777 444
No 26
>PLN03181 glycosyltransferase; Provisional
Probab=91.23 E-value=0.34 Score=43.42 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=37.2
Q ss_pred ccccccEEEEeCCHHHHHHHHHHhh--------------------cCCCCCCChHhHHHHHhh----cCC---CCCCccc
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLKSF--------------------QVSSYNGGDQGFLNEVFT----WWH---RLPKRIN 172 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~~~--------------------~~~~~~~~DQd~LN~~f~----~w~---~Lp~~yN 172 (203)
..+|+|+|+|+.+.|...-|-..+. ....+.-.||..|-.++- +|. .|-..|.
T Consensus 244 ~GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~~~~w~~k~ylE~~yy 323 (453)
T PLN03181 244 TALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKHKEKWGDKIYLEGEYY 323 (453)
T ss_pred cccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhccchhccceeeeccee
Confidence 4799999999998765443332221 111244579999998873 564 5777787
Q ss_pred cee
Q 041855 173 HLK 175 (203)
Q Consensus 173 ~~~ 175 (203)
++.
T Consensus 324 ~~G 326 (453)
T PLN03181 324 FEG 326 (453)
T ss_pred eee
Confidence 764
No 27
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=86.66 E-value=6.8 Score=30.09 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCCCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHc--CCeEEEec
Q 041855 20 TYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA--GWKTKWIS 84 (203)
Q Consensus 20 ~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~--g~~v~~v~ 84 (203)
...+...+||. ++++++.-+.-++.|+++..++..+++ ++=+++++.++.|++. +.+++..+
T Consensus 57 ~n~~~vvfVSa--~S~~h~~~~~~~i~si~~~~P~~k~il-Y~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 57 KNSSDVVFVSA--TSDNHFNESMKSISSIRKFYPNHKIIL-YDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred ccCCccEEEEE--ecchHHHHHHHHHHHHHHHCCCCcEEE-EeCCCCHHHHHHHHhcCCceEEEECC
Confidence 45668889995 578899999999999999988877654 5568999999999874 33444443
No 28
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=84.37 E-value=1.5 Score=35.22 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=28.7
Q ss_pred cccccEEEEeCCHHH---HHHHHHHhhcCCCCCCChHhHHHHHhh
Q 041855 121 LFNSGVMVIEPSLCK---FEDLMLKSFQVSSYNGGDQGFLNEVFT 162 (203)
Q Consensus 121 yfNsGvmvi~p~~~~---~~~l~~~~~~~~~~~~~DQd~LN~~f~ 162 (203)
.+|+|+|.++++... ++...+.+.+. -...||.++|.++.
T Consensus 111 ~~n~G~~~~r~t~~~~~~~~~w~~~~~~~--~~~~DQ~~~n~~l~ 153 (212)
T PF03407_consen 111 LVNTGFYYFRPTPRTIAFLEDWLERMAES--PGCWDQQAFNELLR 153 (212)
T ss_pred ccccceEEEecCHHHHHHHHHHHHHHHhC--CCcchHHHHHHHHH
Confidence 579999999998765 44444444433 12359999999997
No 29
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=83.08 E-value=0.37 Score=40.09 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccccccEEEEeCCHHHHHHHHHHhhcC----CC---CCCChHhHHHHHhh-c-C-----CCCCCc-ccceeeeccCCCcc
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLKSFQV----SS---YNGGDQGFLNEVFT-W-W-----HRLPKR-INHLKVFSKQDDKE 184 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~~~~~----~~---~~~~DQd~LN~~f~-~-w-----~~Lp~~-yN~~~~~~~~~~~~ 184 (203)
..+|+|+|+++.+.+.. .+++..... .. ...+||+.|-.+++ + + ..+|.+ .|.... ... .
T Consensus 143 ~gLNtGsFliRns~ws~-~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~nsy~~---~~~-~ 217 (239)
T PF05637_consen 143 NGLNTGSFLIRNSPWSR-DFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFNSYPE---DEC-N 217 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccc-c
Confidence 48999999999988764 355543221 11 23679999998886 2 1 134432 233211 000 0
Q ss_pred cccCCceEEEEEecCCC
Q 041855 185 HQVGDGLYAIHYLGLKP 201 (203)
Q Consensus 185 ~~~~~~~~IIHf~g~KP 201 (203)
....+..-||||+|.|+
T Consensus 218 ~~~~~GDfvvhfaGC~~ 234 (239)
T PF05637_consen 218 YQYKEGDFVVHFAGCKV 234 (239)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 11233457999999654
No 30
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.10 E-value=16 Score=26.72 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=38.6
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCe
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWK 79 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~ 79 (203)
++.+.+++..|...+.-++..|++.+.. .+.+++....+++..+.|++.|..
T Consensus 53 ~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 53 VIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred EEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHCCCC
Confidence 3333345678999999999999998665 555666656778888999999864
No 31
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.65 E-value=18 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred cCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCe
Q 041855 33 SSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWK 79 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~ 79 (203)
.+..|...+.-++..|++.+.+ ++.+++...++++..+.|++.|..
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCCC
Confidence 3568999999999999987754 555677666888888999999875
No 32
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=47.93 E-value=1.7e+02 Score=25.07 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=36.7
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..++ +++.|+..++...+. .-.++.+|+++...+++.++.++..|.+++.++
T Consensus 53 ~vv~--aSsGN~g~alA~~a~-----~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~ 104 (316)
T cd06448 53 HVVC--SSGGNAGLAAAYAAR-----KLGVPCTIVVPESTKPRVVEKLRDEGATVVVHG 104 (316)
T ss_pred eEEE--eCCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 4444 345555544433222 246889999988999999999999999988775
No 33
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=47.22 E-value=89 Score=26.26 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=38.8
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..|+ ++..|+..++..... ....+.+++++++.+++.++.++..|.+++.++.
T Consensus 67 ~iv~--~ssGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~ 119 (304)
T cd01562 67 GVVA--ASAGNHAQGVAYAAK-----LLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE 119 (304)
T ss_pred cEEE--ECCCHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 3555 355666665555444 3567888888889999999999999999887763
No 34
>PRK11761 cysM cysteine synthase B; Provisional
Probab=44.32 E-value=1.5e+02 Score=25.24 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=40.3
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
...++ +++.|+..++...+. .-.++.+|++++.++++.++.++..|.+++.++.
T Consensus 64 ~~vv~--aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 64 DTLIE--ATSGNTGIALAMIAA-----IKGYRMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred CEEEE--eCCChHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 34555 456777655554433 3567899999999999999999999999987763
No 35
>PLN02565 cysteine synthase
Probab=43.06 E-value=2.2e+02 Score=24.57 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=41.1
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
...|+ +++.|+..++...++. -.++.+|+++++.|++.++.++..|.+++.+++
T Consensus 68 ~~vv~--aSsGN~g~alA~~a~~-----~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 68 SVLIE--PTSGNTGIGLAFMAAA-----KGYKLIITMPASMSLERRIILLAFGAELVLTDP 121 (322)
T ss_pred cEEEE--ECCChHHHHHHHHHHH-----cCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Confidence 35666 4567776666554433 467888889999999999999999999987764
No 36
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=42.02 E-value=1.3e+02 Score=27.39 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=37.5
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
+|+.|...++...+.. -.++.+|+++.+.|++.++.++..|.+|+.++
T Consensus 158 aSsGN~G~slA~~Aa~-----lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~ 205 (431)
T TIGR02035 158 GSTGNLGLSIGIISAA-----LGFQVTVHMSADAKQWKKDKLRSKGVTVVEYE 205 (431)
T ss_pred ECccHHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 4566666665555543 35788898999999999999999999998765
No 37
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=41.39 E-value=49 Score=22.26 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=24.9
Q ss_pred hhCCCCcEEEEecCCCCHHHHHHHHHcCCe
Q 041855 50 QKNSSRDLVLLHDKSISGKSLRSLRAAGWK 79 (203)
Q Consensus 50 ~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~ 79 (203)
.+|.+.+.++++++-+.++.++..++.|++
T Consensus 41 ~~grk~~r~ivVtp~id~~a~~~A~~LGIe 70 (70)
T PF07788_consen 41 VHGRKVDRLIVVTPYIDDRAKEMAEELGIE 70 (70)
T ss_pred HHCCCcceEEEEEeecCHHHHHHHHHhCCC
Confidence 357777888999999999999888888863
No 38
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=41.33 E-value=70 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=29.6
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 53 SSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 53 ~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..+++++++++..|+|.++.|+..|.+++.++.
T Consensus 84 ~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 84 KGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 468899988999999999999999999988775
No 39
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=41.18 E-value=1.4e+02 Score=26.23 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=35.5
Q ss_pred ccCCCCCCeEEEEEeecCcchHHHHHHHHHHHHhh-CC--CCcEEEEecCCCCHHHHHHHHHc
Q 041855 17 NYTTYHQREAYVTILHSSEAYVCGAIALAESIIQK-NS--SRDLVLLHDKSISGKSLRSLRAA 76 (203)
Q Consensus 17 ~~~~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-~~--~~~lvvlv~~~v~~~~~~~L~~~ 76 (203)
....++.+=|+|++ +.| +=+.+++-.++||-+. |. .+|-|+|.....+++-++.+++.
T Consensus 49 ~~~~~r~~Aafv~L-vrN-~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i~~~ 109 (328)
T PF01793_consen 49 ANNYPRENAAFVML-VRN-SDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAISNA 109 (328)
T ss_dssp ---HS---EEEEEE---G-GGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHHHHH
T ss_pred cccCCCCceEEEEE-EEc-hhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 33457778888887 444 4599999999999763 43 58999999999999999998765
No 40
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=41.09 E-value=1.7e+02 Score=24.22 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=45.5
Q ss_pred CeEEEEEeecCc-----chHHHHHHHHHHHHhh--CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 24 REAYVTILHSSE-----AYVCGAIALAESIIQK--NSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 24 ~~AyvT~l~~d~-----~Y~~~~~vl~~SL~~~--~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..-+|.+|+.++ .|.+.+.-=+..|++. ..+.++.+-++.+|++++...+.+.|..++-+.
T Consensus 130 ~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 130 LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred hcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 345677776655 4777777777777764 234567778899999999999999999876544
No 41
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=35.26 E-value=2.3e+02 Score=25.10 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=39.4
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..|+ ++..|+..++...+.. -.++.+|+++.+.+.+.++.|+..|.+|+.+++
T Consensus 113 ~vV~--aSsGN~G~alA~~a~~-----~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 113 TLIE--PTSGNMGISLAFMAAM-----KGYKMILTMPSYTSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred EEEE--eCCchHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 4555 4566676665554432 357888888889999999999999999987763
No 42
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=34.97 E-value=2.3e+02 Score=23.27 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=42.8
Q ss_pred CeEEEEEeecCc-----chHHHHHHHHHHHHhh--CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEe
Q 041855 24 REAYVTILHSSE-----AYVCGAIALAESIIQK--NSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83 (203)
Q Consensus 24 ~~AyvT~l~~d~-----~Y~~~~~vl~~SL~~~--~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v 83 (203)
..=+|++++.++ .|.+.+.--+..+++. ....++.+-++.+|+.++...+.+.|..++.+
T Consensus 132 ~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 132 ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVA 198 (223)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 445677776665 4677666666666654 22345667789999999999999999887644
No 43
>PRK02991 D-serine dehydratase; Provisional
Probab=34.96 E-value=1.9e+02 Score=26.33 Aligned_cols=52 Identities=8% Similarity=-0.050 Sum_probs=38.2
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ +++.|.-.++...+.. -.++.+|+++.+.|+..++.+++.|.+|+.++
T Consensus 159 ~VV~--aSsGN~G~alA~aA~~-----~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~ 210 (441)
T PRK02991 159 SIAV--GSTGNLGLSIGIMSAA-----LGFKVTVHMSADARQWKKDKLRSHGVTVVEYE 210 (441)
T ss_pred EEEE--ECCcHHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC
Confidence 3555 4566665555544433 46788888899999999999999999988665
No 44
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=33.93 E-value=2.6e+02 Score=26.98 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=54.2
Q ss_pred HHHHhhhhhc---cCCCCCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecC-CC----------CHHHHHHH
Q 041855 8 MSQARLAKLN---YTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDK-SI----------SGKSLRSL 73 (203)
Q Consensus 8 ~~~~~~~~~~---~~~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~-~v----------~~~~~~~L 73 (203)
|.++.|+..- ...-..++.||- ++|.....|+.-=+.||.-+-.=-.|+|++++ ++ ++...++.
T Consensus 130 lAe~~La~~fn~~g~~ivdh~tYvl--~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~Rf 207 (663)
T COG0021 130 LAEKHLAALFNRPGFDIVDHYTYVL--VGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRF 207 (663)
T ss_pred HHHHHHHhhhCCCCCccccceEEEE--ecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHH
Confidence 5566666554 333445677775 68999999999999999887666678888752 33 46678899
Q ss_pred HHcCCeEEEe
Q 041855 74 RAAGWKTKWI 83 (203)
Q Consensus 74 ~~~g~~v~~v 83 (203)
++.||.++.+
T Consensus 208 eAyGW~vi~~ 217 (663)
T COG0021 208 EAYGWNVIRV 217 (663)
T ss_pred HhcCCeEEEe
Confidence 9999999844
No 45
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=33.34 E-value=2.5e+02 Score=23.26 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=41.9
Q ss_pred eEEEEEeecCcc-----hHHHHHHHHHHHHhh--CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEe
Q 041855 25 EAYVTILHSSEA-----YVCGAIALAESIIQK--NSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83 (203)
Q Consensus 25 ~AyvT~l~~d~~-----Y~~~~~vl~~SL~~~--~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v 83 (203)
.=+|++++.+++ |.+.+.-=+..+++. +....+.+-++.++..++.+.+.+.|..+..+
T Consensus 141 vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 141 IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVS 206 (228)
T ss_pred cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 346777766654 666666666666653 23445667789999999999999999887544
No 46
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=32.90 E-value=2.8e+02 Score=23.36 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=38.6
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..++ +++.|+..++..... .-.++.+|+++...+++.++.++..|.+++.++.
T Consensus 61 ~vv~--aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~ 113 (290)
T TIGR01138 61 VLIE--ATSGNTGIALAMIAA-----LKGYRMKLLMPDNMSQERKAAMRAYGAELILVTK 113 (290)
T ss_pred EEEE--ECCChHHHHHHHHHH-----HcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 4555 456676555544333 2456888888889999999999999999987763
No 47
>PRK08246 threonine dehydratase; Provisional
Probab=32.11 E-value=1.7e+02 Score=24.99 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=38.7
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...++ ++..|+..++...+.. -..+.+|+++.+++++.++.++..|.+++.++
T Consensus 69 ~~vv~--aSsGN~g~a~A~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 121 (310)
T PRK08246 69 AGVVA--ASGGNAGLAVAYAAAA-----LGVPATVFVPETAPPAKVARLRALGAEVVVVG 121 (310)
T ss_pred CeEEE--eCCCHHHHHHHHHHHH-----cCCCEEEEECCCCcHHHHHHHHHCCCEEEEeC
Confidence 34454 3566666666555442 34788888888999999999999999988765
No 48
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=31.94 E-value=2.7e+02 Score=22.42 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=28.1
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 53 SSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 53 ~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...+.+++++.+.++..++.++..|.+++.++
T Consensus 72 ~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~ 103 (244)
T cd00640 72 LGLKCTIVMPEGASPEKVAQMRALGAEVVLVP 103 (244)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 55788898988899999999999999988776
No 49
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.71 E-value=90 Score=27.78 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=43.3
Q ss_pred ccccccEEEEeCCHHHHHHHHHHhhc----CCCCCCChHhHHHHHhh-------cCCCCCCcc-cceeeeccCCCccccc
Q 041855 120 VLFNSGVMVIEPSLCKFEDLMLKSFQ----VSSYNGGDQGFLNEVFT-------WWHRLPKRI-NHLKVFSKQDDKEHQV 187 (203)
Q Consensus 120 ~yfNsGvmvi~p~~~~~~~l~~~~~~----~~~~~~~DQd~LN~~f~-------~w~~Lp~~y-N~~~~~~~~~~~~~~~ 187 (203)
..+|+|=++++-+... .-++++..+ .-.....+|+.|..+.+ .|..||.+| |.... . .+....
T Consensus 247 nG~naGSfLirns~~~-~~llD~w~dp~l~~~~~~~~Eq~al~~~~e~h~~l~~~vgilp~r~ins~~~---~-~~~~g~ 321 (364)
T KOG4748|consen 247 NGINAGSFLIRNSEWG-RLLLDAWNDPLLYELLWGQKEQDALGHFLENHPQLHSHVGILPLRYINSYPN---G-APGYGY 321 (364)
T ss_pred CCccccceEEecCccc-hhHHHhccCHHHHhhccchHHHHHHHHHHhhchhhhhheeeccHHHHhcCCC---C-CCCCcc
Confidence 4799999999887522 223333222 12234579999999986 245566653 33211 1 111123
Q ss_pred CCceEEEEEecC
Q 041855 188 GDGLYAIHYLGL 199 (203)
Q Consensus 188 ~~~~~IIHf~g~ 199 (203)
.+..-+|||.|+
T Consensus 322 ~egdlvvhFaGC 333 (364)
T KOG4748|consen 322 EEGDLVVHFAGC 333 (364)
T ss_pred ccCCeEEEeccc
Confidence 445678999984
No 50
>PRK07048 serine/threonine dehydratase; Validated
Probab=30.33 E-value=2.2e+02 Score=24.27 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=34.8
Q ss_pred cCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 33 SSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
+..|+..++...+. .-.++.+++++...+++.++.++..|.+|+.++
T Consensus 79 SsGN~g~alA~~a~-----~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~ 125 (321)
T PRK07048 79 SSGNHAQAIALSAR-----LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYD 125 (321)
T ss_pred CCCHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 45555555444333 234788888888899999999999999998776
No 51
>PTZ00413 lipoate synthase; Provisional
Probab=30.26 E-value=2.6e+02 Score=25.30 Aligned_cols=69 Identities=16% Similarity=0.028 Sum_probs=42.2
Q ss_pred hhhhhccCCCCCCeEEEEEeecCc---chHHHHHHHHHHHHhhCCCCcEEEEecCCC--CHHHHHHHHHcCCeEEE
Q 041855 12 RLAKLNYTTYHQREAYVTILHSSE---AYVCGAIALAESIIQKNSSRDLVLLHDKSI--SGKSLRSLRAAGWKTKW 82 (203)
Q Consensus 12 ~~~~~~~~~~~~~~AyvT~l~~d~---~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v--~~~~~~~L~~~g~~v~~ 82 (203)
+.|+..+...- +++.||-...|| .=+....-.+..|++.++...+.++++ ++ +++..+.|.+.|..++.
T Consensus 184 ~vA~av~~~Gl-~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ievlig-Df~g~~e~l~~L~eAG~dvyn 257 (398)
T PTZ00413 184 KVAKAVAEMGV-DYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVG-DFHGDLKSVEKLANSPLSVYA 257 (398)
T ss_pred HHHHHHHHcCC-CEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCC-ccccCHHHHHHHHhcCCCEEe
Confidence 44555554444 477777654333 224444445555555556666666664 45 78899999999987753
No 52
>PLN03013 cysteine synthase
Probab=28.77 E-value=1.6e+02 Score=26.79 Aligned_cols=54 Identities=22% Similarity=0.116 Sum_probs=40.2
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
...|+ +++.|+..++...+.. -.++.+|++++..+++.++.++..|.+|+.++.
T Consensus 176 ~~VVe--aSSGN~G~ALA~~a~~-----~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~ 229 (429)
T PLN03013 176 SVLVE--PTSGNTGIGLAFIAAS-----RGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (429)
T ss_pred cEEEE--ECCcHHHHHHHHHHHH-----cCCCEEEEECCCCcHHHHHHHHHcCCEEEEECC
Confidence 34555 4566666655554433 457889999999999999999999999987764
No 53
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=28.36 E-value=1.1e+02 Score=25.35 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHHHHh-hCCCCcEEEEecCCCCHHHHHHHHHc
Q 041855 41 AIALAESIIQ-KNSSRDLVLLHDKSISGKSLRSLRAA 76 (203)
Q Consensus 41 ~~vl~~SL~~-~~~~~~lvvlv~~~v~~~~~~~L~~~ 76 (203)
=.+++-||+. ++++..++|+++++.|+..+++|++.
T Consensus 44 e~~~LpSl~~QTd~dF~~lv~~~~~~P~~~~~rL~~l 80 (234)
T PF11316_consen 44 ETYCLPSLRAQTDQDFTWLVLFDDDLPEPYRERLRDL 80 (234)
T ss_pred HHHHhhHHHhccCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 3456667765 34444455667899999999999986
No 54
>PRK08005 epimerase; Validated
Probab=28.24 E-value=3.2e+02 Score=22.24 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=42.4
Q ss_pred CeEEEEEeecCc-----chHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEe
Q 041855 24 REAYVTILHSSE-----AYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83 (203)
Q Consensus 24 ~~AyvT~l~~d~-----~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v 83 (203)
..=+|++++.++ .|.+.+.-=++.+++...+.+ +-++.+|++++...+.+.|..+.-+
T Consensus 128 ~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~--I~VDGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAE--CWADGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCC--EEEECCCCHHHHHHHHHCCCCEEEE
Confidence 445677776655 477777777777776554433 6789999999999999999886544
No 55
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.00 E-value=3.3e+02 Score=22.16 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=39.7
Q ss_pred eEEEEEeecCcc-----hHHHHHHHHHHHHhhC--CCCcEEEEecCCCCHHHHHHHHHcCCeEEEe
Q 041855 25 EAYVTILHSSEA-----YVCGAIALAESIIQKN--SSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83 (203)
Q Consensus 25 ~AyvT~l~~d~~-----Y~~~~~vl~~SL~~~~--~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v 83 (203)
.-+|.+++.+++ |++...--+..+++.- ....+-+.+..+|+.++...+.+.|...+-+
T Consensus 129 ~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 129 VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 345666655553 6666666666666542 2334555568899999999999999876543
No 56
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=27.76 E-value=41 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCCCChHhHHHHHhh---cCCCCCCccccee
Q 041855 136 FEDLMLKSFQVSSYNGGDQGFLNEVFT---WWHRLPKRINHLK 175 (203)
Q Consensus 136 ~~~l~~~~~~~~~~~~~DQd~LN~~f~---~w~~Lp~~yN~~~ 175 (203)
.+.+.+....+-.-..+|..-||.||- .-+.||+.|+...
T Consensus 205 ~~~i~~D~~n~I~A~wHDESHLNkYf~~~Kp~KiLSPeY~w~e 247 (271)
T cd02515 205 HEGILADKANGIEARWHDESHLNKYFLLHKPTKVLSPEYLWDD 247 (271)
T ss_pred HHHHHHHHhCCceEEeecHhHhHHHHhhCCCCeecChhhcCCc
Confidence 333433333322235789999999995 3678999999874
No 57
>PLN02356 phosphateglycerate kinase
Probab=27.44 E-value=2e+02 Score=26.15 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=35.6
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
++..|...++...+. .-.++.+|+++++.|++.++.++..|.+|+.++.
T Consensus 110 aSSGN~g~alA~~aa-----~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~ 158 (423)
T PLN02356 110 GSAGSTAISLATVAP-----AYGCKCHVVIPDDVAIEKSQILEALGATVERVRP 158 (423)
T ss_pred eCCHHHHHHHHHHHH-----HcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECC
Confidence 345565443333322 2467889999999999999999999999987753
No 58
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=27.07 E-value=2e+02 Score=24.22 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=36.9
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
++..|+..++...+.. -..+.+|+++.+.+++.++.++..|.+++.++
T Consensus 64 aSsGN~g~alA~~a~~-----~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~ 111 (299)
T TIGR01136 64 ATSGNTGIALAMVAAA-----KGYKLILTMPETMSLERRKLLRAYGAELILTP 111 (299)
T ss_pred eCCChHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHHcCCEEEEeC
Confidence 4567777666655543 34678888888999999999999999988765
No 59
>PRK14057 epimerase; Provisional
Probab=26.16 E-value=3.8e+02 Score=22.63 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=42.9
Q ss_pred CeEEEEEeecCcc-----hHHHHHHHHHHHHhh--CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEe
Q 041855 24 REAYVTILHSSEA-----YVCGAIALAESIIQK--NSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83 (203)
Q Consensus 24 ~~AyvT~l~~d~~-----Y~~~~~vl~~SL~~~--~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v 83 (203)
..-+|++++.+++ |.+.+.-=+..+++. ....++.+-++.+|++++...+.+.|..++..
T Consensus 154 ~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 154 DVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVS 220 (254)
T ss_pred hCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 4557787776664 666666666666553 23456667789999999999999999886544
No 60
>PRK06381 threonine synthase; Validated
Probab=24.85 E-value=1.9e+02 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=34.2
Q ss_pred cCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 33 SSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
+..|...++...+. .-.++.+|+++...++..++.++..|.+++.++
T Consensus 70 SsGN~g~alA~~aa-----~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~ 116 (319)
T PRK06381 70 TCGNYGASIAYFAR-----LYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVD 116 (319)
T ss_pred CCcHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcC
Confidence 44544444433332 245788888888899999999999999998776
No 61
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.34 E-value=1.9e+02 Score=20.23 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=32.4
Q ss_pred CcchHHHHHHHHHHHHhhCCCCcEEEEec-CCCC-HHHHHHHHHcCCeE
Q 041855 34 SEAYVCGAIALAESIIQKNSSRDLVLLHD-KSIS-GKSLRSLRAAGWKT 80 (203)
Q Consensus 34 d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~-~~v~-~~~~~~L~~~g~~v 80 (203)
++.-++|+.-++..|++.+ .+++++.. +.-+ ++..++|++.|..+
T Consensus 12 g~~~ipga~e~l~~L~~~g--~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERG--KPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTT--SEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred CCCcCcCHHHHHHHHHHcC--CCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 5667899999999999975 66666653 3344 67789999999874
No 62
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=23.74 E-value=2e+02 Score=24.48 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=36.5
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...++. +..|+..++...+ ..-.++++++++...|+..++.|+..|.+++.++
T Consensus 71 ~~vv~~--SsGN~g~alA~~a-----~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~ 123 (324)
T cd01563 71 KAVACA--STGNTSASLAAYA-----ARAGIKCVVFLPAGKALGKLAQALAYGATVLAVE 123 (324)
T ss_pred CEEEEe--CCCHHHHHHHHHH-----HHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEEC
Confidence 345553 4455554443222 2245788888888889999999999999998765
No 63
>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []. It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.
Probab=23.51 E-value=2.6e+02 Score=19.56 Aligned_cols=53 Identities=26% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCeEEEEEeecC-cchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHH
Q 041855 23 QREAYVTILHSS-EAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRA 75 (203)
Q Consensus 23 ~~~AyvT~l~~d-~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~ 75 (203)
+.+--=++|-.| +.-...++-|+..+...+++.|+++ |--.+.|.+..+.+.+
T Consensus 29 p~f~v~vllG~dep~l~v~Ar~L~~~i~~~~~~r~lllalgLkd~s~e~lk~i~~ 83 (90)
T PF10178_consen 29 PTFTVKVLLGKDEPLLHVYARQLIEFISQEGSNRPLLLALGLKDHSPETLKAIVE 83 (90)
T ss_dssp --EEEEEEES---HHHHHHHHHHHHHHHHHTTT-EEEEEEE-SS--HHHHHHHHH
T ss_pred CcceEEEEecCCcHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCCHHHHHHHHH
Confidence 333333444223 3344556667777777788999888 6557888888766654
No 64
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=23.35 E-value=2.6e+02 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH-------------H---HHHHHHcCCeEEEec
Q 041855 43 ALAESIIQKNSSRDLVLLHDKSISGK-------------S---LRSLRAAGWKTKWIS 84 (203)
Q Consensus 43 vl~~SL~~~~~~~~lvvlv~~~v~~~-------------~---~~~L~~~g~~v~~v~ 84 (203)
.....+........++|++|++-+.. . .+.+++.|..+..|-
T Consensus 92 ~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig 149 (174)
T cd01454 92 HAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGIT 149 (174)
T ss_pred HHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEE
Confidence 33334443334556777888776531 1 344456677765543
No 65
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=23.28 E-value=85 Score=29.74 Aligned_cols=51 Identities=8% Similarity=0.032 Sum_probs=32.7
Q ss_pred EEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEe---cCCCC---HHHHHHHHHcCCeE
Q 041855 28 VTILHSSEAYVCGAIALAESIIQKNSSRDLVLLH---DKSIS---GKSLRSLRAAGWKT 80 (203)
Q Consensus 28 vT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv---~~~v~---~~~~~~L~~~g~~v 80 (203)
|-+|+.|.++++. .|.++|++++.-++.++++ +.+.| ++.|-+.+..+...
T Consensus 482 AVfLt~~~~~vP~--aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~~f 538 (627)
T COG3158 482 AVFLTRDPDVVPR--ALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSDDF 538 (627)
T ss_pred EEEEcCCCCcCcH--HHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeeeeeccCce
Confidence 5566678887764 5789999988777766543 44444 66655555555443
No 66
>KOG4472 consensus Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) [Carbohydrate transport and metabolism]
Probab=22.93 E-value=3.3e+02 Score=24.50 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=40.4
Q ss_pred CCeEEEEEeecCcchHHHHHHHHHHHHhh-C--CCCcEEEEecCCCCHHHHHHHHHcC
Q 041855 23 QREAYVTILHSSEAYVCGAIALAESIIQK-N--SSRDLVLLHDKSISGKSLRSLRAAG 77 (203)
Q Consensus 23 ~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-~--~~~~lvvlv~~~v~~~~~~~L~~~g 77 (203)
.+-.||++ +.|.+ +.+++-.++|+-+. | =.+|-|.|-+...+++-++..++.-
T Consensus 81 ~natfv~L-~RN~d-L~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~~~~~~ 136 (399)
T KOG4472|consen 81 ENATFVML-ARNSD-LEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEATSDIT 136 (399)
T ss_pred cccEEEEE-Eechh-HHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHHHHHHh
Confidence 44455555 66766 99999999999763 3 3589999998888999888887653
No 67
>COG5020 KTR1 Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=22.93 E-value=3.3e+02 Score=24.50 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=40.4
Q ss_pred CCeEEEEEeecCcchHHHHHHHHHHHHhh-C--CCCcEEEEecCCCCHHHHHHHHHcC
Q 041855 23 QREAYVTILHSSEAYVCGAIALAESIIQK-N--SSRDLVLLHDKSISGKSLRSLRAAG 77 (203)
Q Consensus 23 ~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-~--~~~~lvvlv~~~v~~~~~~~L~~~g 77 (203)
.+-.||++ +.|.+ +.+++-.++|+-+. | =.+|-|.|-+...+++-++..++.-
T Consensus 81 ~natfv~L-~RN~d-L~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~~~~~~ 136 (399)
T COG5020 81 ENATFVML-ARNSD-LEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEATSDIT 136 (399)
T ss_pred cccEEEEE-Eechh-HHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHHHHHHh
Confidence 44455555 66766 99999999999763 3 3589999998888999888887653
No 68
>PRK06608 threonine dehydratase; Provisional
Probab=22.82 E-value=1.6e+02 Score=25.67 Aligned_cols=47 Identities=6% Similarity=-0.173 Sum_probs=35.4
Q ss_pred cCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 33 SSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
+..|+..++...+. .-.++.+|+++...+++.++.++..|.+++.++
T Consensus 79 SsGN~g~alA~~a~-----~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~ 125 (338)
T PRK06608 79 STGNHGQAVAYASK-----LFGIKTRIYLPLNTSKVKQQAALYYGGEVILTN 125 (338)
T ss_pred CCCHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC
Confidence 45666655554333 245788888888999999999999999998775
No 69
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=22.74 E-value=2.3e+02 Score=25.54 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=39.3
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
-.|+ +|+.|.-.++...+. .-.++.+|+++++.|++.++.++..|.+|+.++
T Consensus 136 ~VV~--aSsGN~G~alA~~a~-----~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~ 187 (404)
T cd06447 136 SIAV--GSTGNLGLSIGIMAA-----ALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYE 187 (404)
T ss_pred EEEE--ECccHHHHHHHHHHH-----HcCCCEEEEECCCCcHHHHHHHHHCCCEEEEEC
Confidence 3555 456676665555443 246788999999999999999999999998775
No 70
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=22.63 E-value=1e+02 Score=27.25 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 53 SSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 53 ~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..+++++.+++.+|.|-+..|++.|.+++..++
T Consensus 126 ~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~ 158 (362)
T KOG1252|consen 126 RGYKCIITMPEKMSKEKRILLRALGAEIILTPP 158 (362)
T ss_pred cCceEEEEechhhhHHHHHHHHHcCCEEEecCh
Confidence 457888888999999999999999999987664
No 71
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=22.07 E-value=2.2e+02 Score=24.46 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=35.3
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
++..|+..++...+.. ..++.+|+++...+++.++.++..|.+++.++
T Consensus 73 aSsGN~g~alA~~a~~-----~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~ 120 (317)
T TIGR02991 73 ASTGNHGRALAYAAAE-----EGVRATICMSELVPQNKVDEIRRLGAEVRIVG 120 (317)
T ss_pred ECCCHHHHHHHHHHHH-----hCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeC
Confidence 3455665544443332 45788888888999999999999999998776
No 72
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.88 E-value=3e+02 Score=25.12 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=35.5
Q ss_pred hhhhhccCCCCCCeEEEEEeecCcchHHHHHHHHHHHHhh-------CCCCcEEEEecCCCCHH
Q 041855 12 RLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQK-------NSSRDLVLLHDKSISGK 68 (203)
Q Consensus 12 ~~~~~~~~~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-------~~~~~lvvlv~~~v~~~ 68 (203)
.|.|-|+.+...++++.|+ -|.-|-... ..+...|.+. ..+.|++++.|..|.++
T Consensus 13 ~~~~~~~~~~~~~~~i~t~-GC~~N~~ds-e~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~ 74 (467)
T PRK14329 13 ALVKEAKPKNTKKLFIESY-GCQMNFADS-EIVASILQMAGYNTTENLEEADLVLVNTCSIRDN 74 (467)
T ss_pred cccccccCCCCCEEEEEec-CCCCcHHHH-HHHHHHHHHCcCEECCCcccCCEEEEeCcceech
Confidence 3566777777777888887 444445544 3333445443 24589999999888744
No 73
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=21.76 E-value=4.9e+02 Score=23.23 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=38.0
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ ++..|...++...+. .-.++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 115 ~vv~--aSsGN~g~alA~~aa-----~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~ 166 (396)
T TIGR03528 115 TFVT--ATDGNHGRGVAWAAN-----QLGQKSVVYMPKGSAQIRLENIRAEGAECTITD 166 (396)
T ss_pred EEEE--ECccHHHHHHHHHHH-----HcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEEC
Confidence 5555 355666555544433 245788888888999999999999999998775
No 74
>PLN00011 cysteine synthase
Probab=21.76 E-value=2.6e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=37.9
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ ++..|+..++...+. .-..+.+|+++.++++..++.++..|.+++.++
T Consensus 71 ~vv~--aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~ 122 (323)
T PLN00011 71 TLIE--ATAGNTGIGLACIGA-----ARGYKVILVMPSTMSLERRIILRALGAEVHLTD 122 (323)
T ss_pred EEEE--eCCChHHHHHHHHHH-----HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Confidence 4555 456666555544333 245788888888999999999999999998766
No 75
>PLN02970 serine racemase
Probab=21.37 E-value=2.6e+02 Score=24.09 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=35.7
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
+++.|+-.++...+. .-.++.+|+++++.+++.++.++..|.+++.++
T Consensus 81 aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~ 128 (328)
T PLN02970 81 HSSGNHAAALALAAK-----LRGIPAYIVVPKNAPACKVDAVIRYGGIITWCE 128 (328)
T ss_pred ECCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeC
Confidence 355666555444333 245788999999999999999999999998766
No 76
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=21.35 E-value=2.6e+02 Score=23.35 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=38.8
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...++ ++..|+..++...+.. -..+.+|+++.+.++..++.++..|.+++.++
T Consensus 54 ~~vv~--~SsGN~g~alA~~a~~-----~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~ 106 (291)
T cd01561 54 TTIIE--PTSGNTGIGLAMVAAA-----KGYRFIIVMPETMSEEKRKLLRALGAEVILTP 106 (291)
T ss_pred CEEEE--eCCChHHHHHHHHHHH-----cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeC
Confidence 34555 4566666655554432 34678888888999999999999999998776
No 77
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=21.16 E-value=4.2e+02 Score=23.59 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=36.1
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
++..|...++...+. .-.++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 122 aSsGN~g~alA~~a~-----~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~ 169 (399)
T PRK08206 122 ATDGNHGRGVAWAAQ-----QLGQKAVIYMPKGSSEERVDAIRALGAECIITD 169 (399)
T ss_pred eCCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC
Confidence 456666555544443 245788888888999999999999999988775
No 78
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.59 E-value=2.4e+02 Score=19.84 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCHHHHHH--------HHHcCCeEEEeccc
Q 041855 54 SRDLVLLHDKSISGKSLRS--------LRAAGWKTKWISRI 86 (203)
Q Consensus 54 ~~~lvvlv~~~v~~~~~~~--------L~~~g~~v~~v~~i 86 (203)
.|..++|+.++++++.++. |.+.|.++..++..
T Consensus 7 ~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~w 47 (97)
T CHL00123 7 KYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNR 47 (97)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 5788999999999876543 44557777777654
No 79
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=20.58 E-value=2.9e+02 Score=22.88 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=34.8
Q ss_pred ecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 32 HSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
++..|+..++...+..+ ..+.+++++.++++..++.++..|.+++.+.
T Consensus 62 assGN~g~a~A~~a~~~-----g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 109 (306)
T PF00291_consen 62 ASSGNHGRALAYAAARL-----GLKCTIVVPEDVSPEKLKQMRALGAEVILVP 109 (306)
T ss_dssp ESSSHHHHHHHHHHHHH-----TCEEEEEEETTSHHHHHHHHHHTTCEEEEES
T ss_pred eccCCceehhhhhhhhc-----cccceeeeccccccccccceeeecceEEEcc
Confidence 45666666554443333 3778888888899999999999999887554
No 80
>PRK10717 cysteine synthase A; Provisional
Probab=20.52 E-value=3.1e+02 Score=23.49 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=37.9
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..++ ++..|...++...+.. -..+.+|+++.+.+++.++.++..|.+++.++.
T Consensus 66 ~vv~--aSsGN~g~alA~~a~~-----~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~ 118 (330)
T PRK10717 66 TIVE--GTAGNTGIGLALVAAA-----RGYKTVIVMPETQSQEKKDLLRALGAELVLVPA 118 (330)
T ss_pred EEEE--eCCcHHHHHHHHHHHH-----cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 3454 4556665555444332 356788888889999999999999999987763
No 81
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=20.36 E-value=2e+02 Score=20.92 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=27.4
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCC----------CCCChHhHHHHH
Q 041855 126 VMVIEPSLCKFEDLMLKSFQVSS----------YNGGDQGFLNEV 160 (203)
Q Consensus 126 vmvi~p~~~~~~~l~~~~~~~~~----------~~~~DQd~LN~~ 160 (203)
.|+++.+...++.+.+.+.+... .+.|+|+.|+.+
T Consensus 55 ~liiKT~~~~~~~l~~~ikelHpYevPeIi~i~v~~g~~eYL~Wl 99 (104)
T COG1324 55 ALIIKTTSEKFEELIERIKELHPYEVPEIIALPVDNGLPEYLEWL 99 (104)
T ss_pred EEEEEehHHhHHHHHHHHHHhCCCCCceEEEEEeccCCHHHHHHH
Confidence 57788899999999998876433 456899999875
No 82
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=20.34 E-value=1.8e+02 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=38.7
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeE
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKT 80 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v 80 (203)
.|.+..+|..|...+.-++..|++.+. -++.|++...++++..+.|++.|..-
T Consensus 636 ivvlcs~d~~~~e~~~~l~~~Lk~~G~-~~v~vl~GG~~~~~~~~~l~~aGvD~ 688 (714)
T PRK09426 636 VVGVSSLAAGHKTLVPALIEALKKLGR-EDIMVVVGGVIPPQDYDFLYEAGVAA 688 (714)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhcCC-CCcEEEEeCCCChhhHHHHHhCCCCE
Confidence 444433577999999999999999873 35666676555776678899998753
No 83
>PRK14053 methyltransferase; Provisional
Probab=20.30 E-value=68 Score=25.78 Aligned_cols=57 Identities=35% Similarity=0.292 Sum_probs=35.4
Q ss_pred CCCCeEEEEEeecCcchHHHHHHHHHH---------HHh---hCCCCcEEEEecCCC----CHHHHHHHHHcCC
Q 041855 21 YHQREAYVTILHSSEAYVCGAIALAES---------IIQ---KNSSRDLVLLHDKSI----SGKSLRSLRAAGW 78 (203)
Q Consensus 21 ~~~~~AyvT~l~~d~~Y~~~~~vl~~S---------L~~---~~~~~~lvvlv~~~v----~~~~~~~L~~~g~ 78 (203)
+.+.+|.+|+ +++-+=.+|+.+.+.. +.. .|++.++++++..++ +-.+...|-+-|.
T Consensus 20 ~~S~VAVvTL-~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~NGi 92 (194)
T PRK14053 20 PESRIAVVTL-ASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHANGI 92 (194)
T ss_pred CCCcEEEEEc-cccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHHcCC
Confidence 4578999997 4443333444433322 111 379999999987655 5667777777776
No 84
>PRK06450 threonine synthase; Validated
Probab=20.29 E-value=3e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.2
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 53 SSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 53 ~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...+.+|+++.++|+..++.++..|.+++.++
T Consensus 119 ~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~ 150 (338)
T PRK06450 119 AGIEVKIFVPETASGGKLKQIESYGAEVVRVR 150 (338)
T ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Confidence 45788899999999999999999999998775
No 85
>PRK08638 threonine dehydratase; Validated
Probab=20.19 E-value=3e+02 Score=23.83 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=28.0
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 52 NSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 52 ~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.-.++.+|+++++.+++.++.++..|.+++.++
T Consensus 96 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 128 (333)
T PRK08638 96 LLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHG 128 (333)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEEC
Confidence 346788888888999999999999999998764
No 86
>PRK07476 eutB threonine dehydratase; Provisional
Probab=20.09 E-value=2e+02 Score=24.72 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=36.6
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.|+ ++..|...++...+. .-.++.+|++++..+++.++.++..|.+++.++
T Consensus 70 vv~--aSsGN~g~alA~~a~-----~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~ 120 (322)
T PRK07476 70 VVT--ASTGNHGRALAYAAR-----ALGIRATICMSRLVPANKVDAIRALGAEVRIVG 120 (322)
T ss_pred EEE--ECCChHHHHHHHHHH-----HhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Confidence 455 345566554444333 245778888888999999999999999988775
Done!