Query 041855
Match_columns 203
No_of_seqs 130 out of 899
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u2u_A Glycogenin-1, GN-1, GN1 100.0 4.7E-42 1.6E-46 287.6 12.8 181 22-203 2-222 (263)
2 1ll2_A Glycogenin-1; protein-s 100.0 3.8E-37 1.3E-41 265.9 11.9 180 23-203 2-221 (333)
3 3tzt_A Glycosyl transferase fa 99.9 8.4E-28 2.9E-32 202.4 4.4 173 31-203 10-253 (276)
4 1g9r_A Glycosyl transferase; a 99.9 1.9E-25 6.5E-30 190.6 7.5 171 32-203 6-253 (311)
5 3dwg_A Cysteine synthase B; su 43.6 85 0.0029 25.7 7.7 53 25-84 74-126 (325)
6 3tbh_A O-acetyl serine sulfhyd 41.7 83 0.0029 25.9 7.4 51 27-84 75-125 (334)
7 3l6b_A Serine racemase; pyrido 40.3 80 0.0027 26.1 7.1 51 27-84 79-129 (346)
8 4d9i_A Diaminopropionate ammon 38.8 1.1E+02 0.0039 25.7 8.0 52 26-84 114-165 (398)
9 2v03_A Cysteine synthase B; py 37.0 1.3E+02 0.0046 24.1 7.9 53 25-84 62-114 (303)
10 2pqm_A Cysteine synthase; OASS 36.4 1.2E+02 0.0042 24.9 7.6 52 26-84 80-131 (343)
11 2rkb_A Serine dehydratase-like 35.6 1.3E+02 0.0045 24.2 7.6 54 24-84 54-107 (318)
12 1v71_A Serine racemase, hypoth 34.0 1.1E+02 0.0039 24.7 7.0 52 26-84 76-127 (323)
13 1p5j_A L-serine dehydratase; l 33.4 1.4E+02 0.0048 25.0 7.6 53 25-84 94-146 (372)
14 1y7l_A O-acetylserine sulfhydr 32.5 1.8E+02 0.0061 23.4 7.9 54 25-85 63-116 (316)
15 3ss7_X D-serine dehydratase; t 32.2 1.2E+02 0.0041 26.1 7.1 52 26-84 162-213 (442)
16 1o7q_A N-acetyllactosaminide a 31.7 25 0.00085 29.0 2.4 56 121-176 199-263 (289)
17 1ve1_A O-acetylserine sulfhydr 31.5 1.7E+02 0.0059 23.4 7.6 52 26-84 64-115 (304)
18 3aey_A Threonine synthase; PLP 31.3 1.4E+02 0.0048 24.5 7.2 52 26-84 79-131 (351)
19 2d1f_A Threonine synthase; ami 31.0 1.5E+02 0.0052 24.5 7.4 53 25-84 86-139 (360)
20 3iau_A Threonine deaminase; py 30.6 1.5E+02 0.005 24.7 7.2 51 27-84 111-161 (366)
21 2q3b_A Cysteine synthase A; py 29.8 1.6E+02 0.0053 23.7 7.1 53 26-85 69-121 (313)
22 3pc3_A CG1753, isoform A; CBS, 29.7 1.8E+02 0.0062 25.4 8.0 52 26-84 115-166 (527)
23 4h27_A L-serine dehydratase/L- 29.4 1.6E+02 0.0054 24.5 7.3 53 25-84 94-146 (364)
24 2zsj_A Threonine synthase; PLP 29.1 1.3E+02 0.0045 24.7 6.7 53 25-84 80-133 (352)
25 2gn0_A Threonine dehydratase c 29.0 1.6E+02 0.0055 24.1 7.2 51 27-84 91-141 (342)
26 2egu_A Cysteine synthase; O-ac 27.9 1.7E+02 0.0058 23.4 7.0 53 26-85 67-119 (308)
27 1j0a_A 1-aminocyclopropane-1-c 26.5 1.3E+02 0.0043 24.5 6.0 48 33-85 79-127 (325)
28 4grd_A N5-CAIR mutase, phospho 26.1 2.1E+02 0.0073 21.6 7.1 68 8-81 1-71 (173)
29 1s4n_A Glycolipid 2-alpha-mann 25.8 3E+02 0.01 23.2 9.7 55 20-76 24-81 (348)
30 3vc3_A Beta-cyanoalnine syntha 25.6 2.8E+02 0.0096 22.8 10.0 53 25-84 88-140 (344)
31 1ve5_A Threonine deaminase; ri 24.5 1.1E+02 0.0037 24.7 5.1 52 26-84 67-118 (311)
32 1o58_A O-acetylserine sulfhydr 21.1 1.1E+02 0.0039 24.5 4.6 51 27-84 68-118 (303)
33 1n6j_G Calcineurin-binding pro 20.9 67 0.0023 17.2 2.0 14 63-76 7-20 (35)
34 4aec_A Cysteine synthase, mito 20.1 4.1E+02 0.014 22.7 10.0 53 25-84 176-228 (430)
No 1
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=100.00 E-value=4.7e-42 Score=287.57 Aligned_cols=181 Identities=31% Similarity=0.470 Sum_probs=156.3
Q ss_pred CCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC------------
Q 041855 22 HQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP------------ 89 (203)
Q Consensus 22 ~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p------------ 89 (203)
.+++||||++ +|++|++|+++|++||+++|++++++||+++++|++.++.|++.|.+++.|+.++.+
T Consensus 2 ~~~~AyvTl~-td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~ 80 (263)
T 3u2u_A 2 MTDQAFVTLT-TNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE 80 (263)
T ss_dssp TTTEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred CcceEEEEEE-ECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence 4589999975 799999999999999999999999999999999999999999999999998877542
Q ss_pred ----CCccccccccceeEEE--------------EeccCccccCCCCc--ccccccEEEEeCCHHHHHHHHHHhhcCCCC
Q 041855 90 ----FAKKDSYNEWNYSKLR--------------FFFYPELSAAGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSY 149 (203)
Q Consensus 90 ----~~k~~~~~l~~Y~rl~--------------Lfd~~~~aA~~d~~--~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~ 149 (203)
++|+.+|.+++|+|++ ||++++++|+||.+ .|||||||||+|+..+++++++.+.+.+++
T Consensus 81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~ 160 (263)
T 3u2u_A 81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSF 160 (263)
T ss_dssp GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCT
T ss_pred hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCC
Confidence 4578899999999997 88888899999975 699999999999999999999999887789
Q ss_pred CCChHhHHHHHhhcC------CCCCCcccceeeeccCCCcc-cccCCceEEEEEec-CCCCC
Q 041855 150 NGGDQGFLNEVFTWW------HRLPKRINHLKVFSKQDDKE-HQVGDGLYAIHYLG-LKPWM 203 (203)
Q Consensus 150 ~~~DQd~LN~~f~~w------~~Lp~~yN~~~~~~~~~~~~-~~~~~~~~IIHf~g-~KPW~ 203 (203)
.++|||+||.+|++| ..||.+||++........+. .+..++++||||+| .|||+
T Consensus 161 ~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~ 222 (263)
T 3u2u_A 161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWN 222 (263)
T ss_dssp TSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGG
T ss_pred CcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCC
Confidence 999999999999865 68999999986421111111 12357899999999 89995
No 2
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=100.00 E-value=3.8e-37 Score=265.87 Aligned_cols=180 Identities=31% Similarity=0.467 Sum_probs=154.1
Q ss_pred CCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC-------------
Q 041855 23 QREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP------------- 89 (203)
Q Consensus 23 ~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p------------- 89 (203)
++.||||+ ++|++|++|+.+|++||++++++.+++||++++++++.++.|++.+.+++.|+.+..+
T Consensus 2 s~~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~ 80 (333)
T 1ll2_A 2 TDQAFVTL-TTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL 80 (333)
T ss_dssp CSEEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred CceEEEEE-EeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence 68999998 4799999999999999999999999999999999999999999999999998877653
Q ss_pred ---CCccccccccceeEEE--------------EeccCccccCCCCc--ccccccEEEEeCCHHHHHHHHHHhhcCCCCC
Q 041855 90 ---FAKKDSYNEWNYSKLR--------------FFFYPELSAAGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSYN 150 (203)
Q Consensus 90 ---~~k~~~~~l~~Y~rl~--------------Lfd~~~~aA~~d~~--~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~ 150 (203)
++|+.+|.+.+|+||+ ||+++.++|+||.+ .||||||||++|+..+++++++.+.+.+++.
T Consensus 81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~ 160 (333)
T 1ll2_A 81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160 (333)
T ss_dssp HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 2356678889999997 78888899999975 5999999999999999999999998878889
Q ss_pred CChHhHHHHHhhcC------CCCCCcccceeeeccCCCcc-cccCCceEEEEEec-CCCCC
Q 041855 151 GGDQGFLNEVFTWW------HRLPKRINHLKVFSKQDDKE-HQVGDGLYAIHYLG-LKPWM 203 (203)
Q Consensus 151 ~~DQd~LN~~f~~w------~~Lp~~yN~~~~~~~~~~~~-~~~~~~~~IIHf~g-~KPW~ 203 (203)
++|||+||.+|.+| ..||.+||++........+. ....++++||||+| .|||+
T Consensus 161 ~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~ 221 (333)
T 1ll2_A 161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWN 221 (333)
T ss_dssp SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGG
T ss_pred CCCHHHHHHHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCC
Confidence 99999999999988 68999999986421110011 12356899999999 89995
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.94 E-value=8.4e-28 Score=202.38 Aligned_cols=173 Identities=20% Similarity=0.207 Sum_probs=116.5
Q ss_pred eecCcchHHHHHHHHHHHHhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeEEEecccCCCCC--------------
Q 041855 31 LHSSEAYVCGAIALAESIIQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKTKWISRIRSPFA-------------- 91 (203)
Q Consensus 31 l~~d~~Y~~~~~vl~~SL~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v~~v~~i~~p~~-------------- 91 (203)
+++|++|+.|+.++++||++++++.++.+ ++++++++++++.|++. |.++..++.-...+.
T Consensus 10 ~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 89 (276)
T 3tzt_A 10 LTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYY 89 (276)
T ss_dssp EECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------CHHHHH
T ss_pred EEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccccccCHHHHH
Confidence 46799999999999999999988777766 66789999999888764 555544432111111
Q ss_pred cccccccc--ceeEEE--------------EeccC----ccccCCCC-----------------cccccccEEEEeCCHH
Q 041855 92 KKDSYNEW--NYSKLR--------------FFFYP----ELSAAGND-----------------KVLFNSGVMVIEPSLC 134 (203)
Q Consensus 92 k~~~~~l~--~Y~rl~--------------Lfd~~----~~aA~~d~-----------------~~yfNsGvmvi~p~~~ 134 (203)
++..+.+. +|+|++ ||+++ .++|++|. +.||||||||++++.+
T Consensus 90 rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~linl~~~ 169 (276)
T 3tzt_A 90 RLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLINLKRA 169 (276)
T ss_dssp HHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEEEHHHH
T ss_pred HHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEEEHHHH
Confidence 11122232 689997 66654 37777763 2699999999999975
Q ss_pred H----HHHHHHHhhcCC-CCCCChHhHHHHHhh-cCCCCCC-cccceeeecc-----CCCc-c-cccCCceEEEEEec-C
Q 041855 135 K----FEDLMLKSFQVS-SYNGGDQGFLNEVFT-WWHRLPK-RINHLKVFSK-----QDDK-E-HQVGDGLYAIHYLG-L 199 (203)
Q Consensus 135 ~----~~~l~~~~~~~~-~~~~~DQd~LN~~f~-~w~~Lp~-~yN~~~~~~~-----~~~~-~-~~~~~~~~IIHf~g-~ 199 (203)
. .+++++.+.+.+ ++.++|||+||.+|. +|..||. +||++..+.. .... . .+..++++||||+| .
T Consensus 170 R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~ 249 (276)
T 3tzt_A 170 REEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRD 249 (276)
T ss_dssp HHHCCHHHHHHHHHHC--------CHHHHHHHGGGEEEEEHHHHSEETTCHHHHHHHTTTCCSHHHHHHHCCEEECCSSC
T ss_pred HhhhHHHHHHHHHHhccccccCCChhHHHHHHhCCEEECCchheeeecccchhhhccccchhhhhhhccCCeEEEECCCC
Confidence 4 456777766543 677899999999998 8999998 8999863211 0000 0 12456899999999 7
Q ss_pred CCCC
Q 041855 200 KPWM 203 (203)
Q Consensus 200 KPW~ 203 (203)
|||+
T Consensus 250 KPW~ 253 (276)
T 3tzt_A 250 KPWK 253 (276)
T ss_dssp CTTS
T ss_pred CCcC
Confidence 9995
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.92 E-value=1.9e-25 Score=190.65 Aligned_cols=171 Identities=20% Similarity=0.203 Sum_probs=118.8
Q ss_pred ecCcchHHHHHHHHHHH-HhhCCCCcEEE-EecCCCCHHHHHHHHHc----CCeEEEec--c--cC-CCC----------
Q 041855 32 HSSEAYVCGAIALAESI-IQKNSSRDLVL-LHDKSISGKSLRSLRAA----GWKTKWIS--R--IR-SPF---------- 90 (203)
Q Consensus 32 ~~d~~Y~~~~~vl~~SL-~~~~~~~~lvv-lv~~~v~~~~~~~L~~~----g~~v~~v~--~--i~-~p~---------- 90 (203)
++|++|+.++.++++|| +++ ++.++.+ ++++++|++.++.|++. |.++..++ . +. -|.
T Consensus 6 ~~d~~Y~~~~~vli~Sl~l~~-~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y 84 (311)
T 1g9r_A 6 AADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTY 84 (311)
T ss_dssp EECGGGHHHHHHHHHHHHHTC-TTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGGG
T ss_pred ECCHhHHHHHHHHHHHHHHHc-CCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccccccCCHHHH
Confidence 56999999999999999 665 3445444 44778999999999876 55554332 1 11 111
Q ss_pred Ccccccc-ccceeEEE--------------EeccC----ccccCCCC-----------------cccccccEEEEeCCHH
Q 041855 91 AKKDSYN-EWNYSKLR--------------FFFYP----ELSAAGND-----------------KVLFNSGVMVIEPSLC 134 (203)
Q Consensus 91 ~k~~~~~-l~~Y~rl~--------------Lfd~~----~~aA~~d~-----------------~~yfNsGvmvi~p~~~ 134 (203)
.++..+. +.+|+|++ ||+++ .++|++|. ..||||||||++++.+
T Consensus 85 ~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~linl~~~ 164 (311)
T 1g9r_A 85 ARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKW 164 (311)
T ss_dssp GGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECHHHH
T ss_pred HHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeeeHHHH
Confidence 1222222 35788987 66654 36677652 2599999999999864
Q ss_pred ----HHHHHHHHhhcC-CCCCCChHhHHHHHhh-cCCCCCCcccceeeec------cCCC-c------ccccCCceEEEE
Q 041855 135 ----KFEDLMLKSFQV-SSYNGGDQGFLNEVFT-WWHRLPKRINHLKVFS------KQDD-K------EHQVGDGLYAIH 195 (203)
Q Consensus 135 ----~~~~l~~~~~~~-~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~~------~~~~-~------~~~~~~~~~IIH 195 (203)
+.+++++.+.+. .++.++|||+||.+|. .|..||.+||++.... .... . .....++++|||
T Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiH 244 (311)
T 1g9r_A 165 RRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSH 244 (311)
T ss_dssp TTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEE
T ss_pred HhcchHHHHHHHHHhccCcCccCCcCHHHHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEE
Confidence 567788877654 4578899999999998 8999999999986321 1100 0 012345889999
Q ss_pred Eec-CCCCC
Q 041855 196 YLG-LKPWM 203 (203)
Q Consensus 196 f~g-~KPW~ 203 (203)
|+| .|||.
T Consensus 245 y~g~~KPW~ 253 (311)
T 1g9r_A 245 YCGPAKPWH 253 (311)
T ss_dssp CCSSCCTTS
T ss_pred eCCcCCCCC
Confidence 999 79995
No 5
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=43.57 E-value=85 Score=25.70 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=39.5
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|| ++..|...++...+..+ ..+.+|+++.+.+++.++.++..|.+|+.++
T Consensus 74 ~~vv~--aSsGN~g~alA~aa~~~-----G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 126 (325)
T 3dwg_A 74 ATILE--PTSGNTGISLAMAARLK-----GYRLICVMPENTSVERRQLLELYGAQIIFSA 126 (325)
T ss_dssp CEEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEESSSCHHHHHHHHHHTCEEEEEC
T ss_pred CEEEE--eCCcHHHHHHHHHHHHc-----CCcEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 34566 35667776666555433 4778888888899999999999999998775
No 6
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=41.68 E-value=83 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=38.4
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.|| ++..|...++...+..+ .++.+|+++.+.+.+.++.++..|.+++.++
T Consensus 75 vv~--aSsGN~g~alA~aa~~~-----G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 125 (334)
T 3tbh_A 75 VVE--SSSGNTGVSLAHLGAIR-----GYKVIITMPESMSLERRCLLRIFGAEVILTP 125 (334)
T ss_dssp EEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred EEE--eCCCHHHHHHHHHHHHh-----CCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 455 35667766666555544 5678888888899999999999999998775
No 7
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=40.25 E-value=80 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=38.1
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.|| ++..|...++...+.. -.++.+|+++.+.|++.++.++..|.+++.++
T Consensus 79 vv~--~SsGNhg~a~A~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~ 129 (346)
T 3l6b_A 79 VVT--HSSGNHGQALTYAAKL-----EGIPAYIVVPQTAPDCKKLAIQAYGASIVYCE 129 (346)
T ss_dssp EEE--ECSSHHHHHHHHHHHH-----TTCCEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred EEE--eCCCHHHHHHHHHHHH-----hCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 566 3566676665554433 36788888888899999999999999998765
No 8
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=38.76 E-value=1.1e+02 Score=25.68 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=40.1
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|| +++.|...++...+..+ .++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 114 ~vv~--aSsGNhg~a~A~aa~~~-----G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~ 165 (398)
T 4d9i_A 114 TFAT--TTDGNHGRGVAWAAQQL-----GQNAVIYMPKGSAQERVDAILNLGAECIVTD 165 (398)
T ss_dssp EEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEECTTCCHHHHHHHHTTTCEEEECS
T ss_pred EEEE--ECCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCHHHHHHHHHcCCEEEEEC
Confidence 5666 46677777666665544 5678888888999999999999999988765
No 9
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=37.00 E-value=1.3e+02 Score=24.06 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=38.9
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|+ ++..|...++...+.. ..++.++++++++|++.++.++..|.+++.++
T Consensus 62 ~~vv~--~ssGN~g~a~A~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 114 (303)
T 2v03_A 62 DVLIE--ATSGNTGIALAMIAAL-----KGYRMKLLMPDNMSQERRAAMRAYGAELILVT 114 (303)
T ss_dssp CEEEE--ECSSHHHHHHHHHHHH-----HTCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred CEEEE--ECCcHHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 34555 3566777665555442 24678888888899999999999999988765
No 10
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=36.39 E-value=1.2e+02 Score=24.92 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=38.4
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ +++.|...++...+.. ...+.+|++++++|++.++.++..|.+|+.++
T Consensus 80 ~vv~--aSsGN~g~alA~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 131 (343)
T 2pqm_A 80 EIIE--STSGNTGIALCQAGAV-----FGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131 (343)
T ss_dssp EEEE--ECSSHHHHHHHHHHHH-----HTCCEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred EEEE--ECCcHHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 4555 3556676665555433 35788888888899999999999999988765
No 11
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=35.62 E-value=1.3e+02 Score=24.24 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=38.4
Q ss_pred CeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 24 REAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 24 ~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
....|| ++..|...++...+.. -..+.+++++.++|++.++.++..|.+|+.++
T Consensus 54 ~~~vv~--~ssGN~g~alA~~a~~-----~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~ 107 (318)
T 2rkb_A 54 CRHLVC--SSGGNAGIAAAYAARK-----LGIPATIVLPESTSLQVVQRLQGEGAEVQLTG 107 (318)
T ss_dssp CCEEEE--CCCSHHHHHHHHHHHH-----HTCCEEEEECTTCCHHHHHHHHHTTCEEEECC
T ss_pred CCEEEE--ECCchHHHHHHHHHHH-----cCCCEEEEECCCCcHHHHHHHHhcCCEEEEEC
Confidence 344555 3556666665544432 24788888888999999999999999988765
No 12
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=34.02 E-value=1.1e+02 Score=24.74 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=37.9
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|| ++..|...++...+.. -.++.+++++++.+++.++.++..|.+++.++
T Consensus 76 ~vv~--~ssGN~g~alA~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 127 (323)
T 1v71_A 76 GVLT--FSSGNHAQAIALSAKI-----LGIPAKIIMPLDAPEAKVAATKGYGGQVIMYD 127 (323)
T ss_dssp CEEE--CCSSHHHHHHHHHHHH-----TTCCEEEEEETTCCHHHHHHHHHTTCEEEEEC
T ss_pred eEEE--eCCCcHHHHHHHHHHH-----cCCCEEEECCCCCcHHHHHHHHHcCCEEEEEC
Confidence 3455 3456666665555432 35788888888899999999999999998765
No 13
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=33.36 E-value=1.4e+02 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=37.8
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|| ++..|...++...+.. -.++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 94 ~~vv~--aSsGN~g~alA~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 146 (372)
T 1p5j_A 94 AHFVC--SSAGNAGMAAAYAARQ-----LGVPATIVVPGTTPALTIERLKNEGATCKVVG 146 (372)
T ss_dssp CEEEE--CCSSHHHHHHHHHHHH-----HTCCEEEEECTTCCHHHHHHHHHTTCEEEECC
T ss_pred CEEEE--eCCCHHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHhcCCEEEEEC
Confidence 34455 3456666665554422 24778888888999999999999999988664
No 14
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=32.45 E-value=1.8e+02 Score=23.40 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=39.1
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
...|+ ++..|...++...+.. -.++.+|+++.++|++.++.++..|.+++.++.
T Consensus 63 ~~vv~--~ssGN~g~a~A~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 63 KEIVD--ATSGNTGIALAYVAAA-----RGYKITLTMPETMSLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp CEEEE--SCCSHHHHHHHHHHHH-----HTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CEEEE--eCCcHHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 34555 3566776665555442 246788888888999999999999999887653
No 15
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=32.17 E-value=1.2e+02 Score=26.12 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=38.8
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ ++..|...++...+..+ .++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 162 ~vv~--aSsGNhg~avA~~aa~~-----G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~ 213 (442)
T 3ss7_X 162 SIAV--GSTGNLGLSIGIMSARI-----GFKVTVHMSADARAWKKAKLRSHGVTVVEYE 213 (442)
T ss_dssp EEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEETTSCHHHHHHHHHTTCEEEEES
T ss_pred EEEE--ECCCHHHHHHHHHHHHh-----CCcEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 4444 45677777666555443 4677888888999999999999999998765
No 16
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=31.72 E-value=25 Score=29.03 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=36.4
Q ss_pred cccccEE------EEeCCHHHHHHHHHHhhcCCCCCCChHhHHHHHhh---cCCCCCCcccceee
Q 041855 121 LFNSGVM------VIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFT---WWHRLPKRINHLKV 176 (203)
Q Consensus 121 yfNsGvm------vi~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~---~w~~Lp~~yN~~~~ 176 (203)
|+-+|++ |++....-.+.|++....+-.-.++|..-||.||- .-+.||+.|+....
T Consensus 199 YY~Ga~fGGt~~~vl~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~~~KPtKvLSPEY~wd~~ 263 (289)
T 1o7q_A 199 YYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYH 263 (289)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSCCSEEECGGGSBCGG
T ss_pred EEEceeeCCcHHHHHHHHHHHHHHHHHHHhCCeEEEecchhhhhHHHhhcCCCEEECHHHCCCcc
Confidence 6666655 23333444555555544443446799999999973 44689999998754
No 17
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=31.48 E-value=1.7e+02 Score=23.36 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=38.8
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ ++..|...++...+.. ...+.+++++.++++..++.++..|.+++.++
T Consensus 64 ~vv~--assGN~g~a~A~~a~~-----~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~ 115 (304)
T 1ve1_A 64 VIVE--PTSGNTGIGLAMIAAS-----RGYRLILTMPAQMSEERKRVLKAFGAELVLTD 115 (304)
T ss_dssp EEEE--SCCSHHHHHHHHHHHH-----HTCEEEEEEETTCCHHHHHHHHHTTCEEEEEC
T ss_pred EEEE--eCCcHHHHHHHHHHHH-----cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Confidence 5565 4567777766555442 24678888888899999999999999988765
No 18
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=31.34 E-value=1.4e+02 Score=24.55 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=36.0
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKS-ISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~-v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|| ++..|...++...+.. ..++.+++++++ +|++.++.++..|.+++.++
T Consensus 79 ~vv~--~SsGN~g~alA~~a~~-----~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~ 131 (351)
T 3aey_A 79 AVAC--ASTGNTAASAAAYAAR-----AGILAIVVLPAGYVALGKVAQSLVHGARIVQVE 131 (351)
T ss_dssp EEEE--SCSSHHHHHHHHHHHH-----HTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEE
T ss_pred EEEE--eCCCHHHHHHHHHHHH-----cCCCEEEEECCCCCCHHHHHHHHHcCCEEEEEC
Confidence 4444 3455666555433322 247788888776 99999999999999988765
No 19
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=31.00 E-value=1.5e+02 Score=24.49 Aligned_cols=53 Identities=21% Similarity=0.105 Sum_probs=36.6
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKS-ISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~-v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|| ++..|...++...+.. ..++.+|+++++ +|++.++.++..|.+++.++
T Consensus 86 ~~vv~--aSsGN~g~alA~~a~~-----~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~ 139 (360)
T 2d1f_A 86 RAVLC--ASTGNTSASAAAYAAR-----AGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139 (360)
T ss_dssp SEEEE--CCSSHHHHHHHHHHHH-----HTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBS
T ss_pred CEEEE--eCCcHHHHHHHHHHHH-----cCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEEC
Confidence 34444 3456666555544332 246788888776 99999999999999988765
No 20
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=30.56 E-value=1.5e+02 Score=24.67 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=37.0
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.+| ++..|...++...+.. -..+.+++++.+.+++.++.++..|.+++.++
T Consensus 111 vv~--assGN~g~a~A~aa~~-----~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~ 161 (366)
T 3iau_A 111 VIT--ASAGNHAQGVALAGQR-----LNCVAKIVMPTTTPQIKIDAVRALGGDVVLYG 161 (366)
T ss_dssp EEE--ECSSHHHHHHHHHHHH-----TTCCEEEEECTTCCHHHHHHHHHTTCEEEECC
T ss_pred EEE--eCCCHHHHHHHHHHHH-----hCCceEEEeCCCCCHHHHHHHHHCCCeEEEEC
Confidence 454 3556666555544332 36788888888999999999999999988765
No 21
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=29.83 E-value=1.6e+02 Score=23.74 Aligned_cols=53 Identities=15% Similarity=0.022 Sum_probs=39.3
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..|+ ++..|...++...+.. ..++.+|+++.++|++.++.++..|.+++.++.
T Consensus 69 ~vv~--assGN~g~alA~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 69 IILE--PTSGNTGIALAMVCAA-----RGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp EEEE--ECSSHHHHHHHHHHHH-----HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEE--eCCCHHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 4555 4567777776555542 246788888888999999999999999887653
No 22
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=29.69 E-value=1.8e+02 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=39.1
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..|+ ++..|...++...+..+ .++.+|+++..++++.++.++..|.+++.++
T Consensus 115 ~vv~--~ssGN~g~a~A~~a~~~-----G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~ 166 (527)
T 3pc3_A 115 TIIE--PTSGNTGIGLAMACAVK-----GYKCIIVMPEKMSNEKVSALRTLGAKIIRTP 166 (527)
T ss_dssp EEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred EEEE--eCCCHHHHHHHHHHHHh-----CCeEEEEEcCCCCHHHHHHHHHCCCEEEEeC
Confidence 4555 45677776666555444 5788888888999999999999999988764
No 23
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=29.42 E-value=1.6e+02 Score=24.48 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=37.0
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...+| ++..|...++...+.. -.++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 94 ~~vv~--aSsGN~g~alA~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~ 146 (364)
T 4h27_A 94 AHFVC--SSSGNAGMAAAYAARQ-----LGVPATIVVPGTTPALTIERLKNEGATVKVVG 146 (364)
T ss_dssp CEEEE--CCSSHHHHHHHHHHHH-----HTCCEEEEEETTSCHHHHHHHHTTTCEEEEEC
T ss_pred CEEEE--eCCChHHHHHHHHHHH-----hCCceEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 34444 3455665554444332 25778888888899999999999999988775
No 24
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=29.06 E-value=1.3e+02 Score=24.69 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=36.7
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKS-ISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~-v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|| ++..|...++...+.. ..++.+|+++++ ++++.++.++..|.+++.++
T Consensus 80 ~~vv~--~SsGN~g~alA~~a~~-----~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~ 133 (352)
T 2zsj_A 80 RAVIC--ASTGNTSASAAAYAAR-----AGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ 133 (352)
T ss_dssp CEEEE--CCSSHHHHHHHHHHHH-----HTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEES
T ss_pred CEEEE--eCCchHHHHHHHHHHh-----cCCcEEEEECCCCCCHHHHHHHHHcCCEEEEEC
Confidence 34444 3456666555544332 247788888776 99999999999999988765
No 25
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=29.03 E-value=1.6e+02 Score=24.13 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=37.6
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.|| ++..|...++...+.. ..++.++++++++|++.++.++..|.+|+.++
T Consensus 91 vv~--~ssGN~g~alA~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 141 (342)
T 2gn0_A 91 VVA--CSAGNHAQGVSLSCAM-----LGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG 141 (342)
T ss_dssp EEE--ECSSHHHHHHHHHHHH-----HTCCEEEEECTTSCHHHHHHHHHHSCEEEECC
T ss_pred EEE--ECCChHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 455 3556676666555542 24688888888999999999999999988664
No 26
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=27.91 E-value=1.7e+02 Score=23.43 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=38.7
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecc
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~ 85 (203)
..|+ ++..|...++...+.. ...+.+|+++.++|++.++.++..|.+++.++.
T Consensus 67 ~vv~--assGN~g~a~A~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 119 (308)
T 2egu_A 67 TIVE--PTSGNTGIGLAMVAAA-----KGYKAVLVMPDTMSLERRNLLRAYGAELVLTPG 119 (308)
T ss_dssp EEEE--ECCHHHHHHHHHHHHH-----HTCEEEEEEESCSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEE--eCCCHHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 4555 4566776665555432 247888888888999999999999999887753
No 27
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=26.53 E-value=1.3e+02 Score=24.47 Aligned_cols=48 Identities=10% Similarity=-0.068 Sum_probs=35.4
Q ss_pred cCcchHHHHHHHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHcCCeEEEecc
Q 041855 33 SSEAYVCGAIALAESIIQKNSSRDLVLLHDKSI-SGKSLRSLRAAGWKTKWISR 85 (203)
Q Consensus 33 ~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v-~~~~~~~L~~~g~~v~~v~~ 85 (203)
+..|...++...+.. -.++.+++++++. +++.++.++..|.+++.++.
T Consensus 79 ssGN~g~alA~~a~~-----~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~ 127 (325)
T 1j0a_A 79 VHSNHAFVTGLAAKK-----LGLDAILVLRGKEELKGNYLLDKIMGIETRVYDA 127 (325)
T ss_dssp TTCHHHHHHHHHHHH-----TTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESC
T ss_pred cchHHHHHHHHHHHH-----hCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCc
Confidence 455666665555443 2467888888888 99999999999999987763
No 28
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=26.15 E-value=2.1e+02 Score=21.59 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=39.5
Q ss_pred HHHHhhhhhccCCCCCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHH---cCCeEE
Q 041855 8 MSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRA---AGWKTK 81 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~---~g~~v~ 81 (203)
||+.+.+ .+.+.++++.++ +++.=++-+.-....|.+.+-++++-|.--...+++..+..++ .|.+++
T Consensus 1 mse~~~~---~~~~~P~V~Iim---GS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~Vi 71 (173)
T 4grd_A 1 MSEIQTA---HTHSAPLVGVLM---GSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAI 71 (173)
T ss_dssp -----CT---TCCSSCSEEEEE---SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEE
T ss_pred CCccccC---CCCCCCeEEEEe---CcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEE
Confidence 5554433 334455666554 6666677777777778888877776666555677776655544 466654
No 29
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=25.79 E-value=3e+02 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=42.9
Q ss_pred CCCCCeEEEEEeecCcchHHHHHHHHHHHHhh-CC--CCcEEEEecCCCCHHHHHHHHHc
Q 041855 20 TYHQREAYVTILHSSEAYVCGAIALAESIIQK-NS--SRDLVLLHDKSISGKSLRSLRAA 76 (203)
Q Consensus 20 ~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~-~~--~~~lvvlv~~~v~~~~~~~L~~~ 76 (203)
.++.+=|+|+++ .| .=+.+++-.++||-+. |. .+|-|+|.+...+++-++.+++.
T Consensus 24 ~~r~nAtfV~L~-RN-~el~~~l~Si~~vE~rFN~~y~YpwvFlNd~pFteeFk~~~~~~ 81 (348)
T 1s4n_A 24 AGKPKACYVTLV-RN-KELKGLLSSIKYVENKINKKFPYPWVFLNDEPFTEEFKEAVTKA 81 (348)
T ss_dssp CSCCCEEEEEEC-CG-GGHHHHHHHHHHHHHHTTTTSCCCEEEEESSCCCHHHHHHHHHH
T ss_pred CCCCceEEEEEe-cc-HHHHHHHHHHHHHHHHhhccCCCCEEEecCCCCCHHHHHHHHHh
Confidence 345677888873 44 4599999999998763 33 58999999999999999888876
No 30
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=25.57 E-value=2.8e+02 Score=22.76 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=39.8
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|+ ++..|...++...+..+ .++.+|+++.+.+++.++.++..|.+|+.++
T Consensus 88 ~~Vv~--aSsGN~g~alA~~aa~~-----G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~ 140 (344)
T 3vc3_A 88 TTLIE--PTSGNMGISMAFMAAMK-----GYKMVLTMPSYTSLERRVTMRAFGAELILTD 140 (344)
T ss_dssp CEEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred CEEEE--eCCcHHHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHHcCCEEEEEC
Confidence 34454 45677777766655443 4678888888999999999999999998765
No 31
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=24.46 E-value=1.1e+02 Score=24.68 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=35.5
Q ss_pred EEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 26 AYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 26 AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
..||. +..|...++...+.. -.++.++++++++|++.++.++..|.+++.++
T Consensus 67 ~vv~~--ssGN~g~alA~~a~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 118 (311)
T 1ve5_A 67 GLLAV--SSGNHAQGVAYAAQV-----LGVKALVVMPEDASPYKKACARAYGAEVVDRG 118 (311)
T ss_dssp CEEEE--CSSHHHHHHHHHHHH-----HTCCEEEECCCC--CCHHHHHHHTTCEEECTT
T ss_pred eEEEE--CCCcHHHHHHHHHHH-----cCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 35553 556676665555432 24688888888899999999999999987554
No 32
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=21.07 E-value=1.1e+02 Score=24.50 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.6
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 27 YVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 27 yvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
.|+ ++..|...++...+.. ..++.+|++++++++..++.++..|.+++.++
T Consensus 68 vv~--aSsGN~g~a~A~aa~~-----~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 118 (303)
T 1o58_A 68 IVE--PTSGNMGIAIAMIGAK-----RGHRVILTMPETMSVERRKVLKMLGAELVLTP 118 (303)
T ss_dssp EEE--ECSSHHHHHHHHHHHH-----HTCCEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred EEE--ECchHHHHHHHHHHHH-----cCCcEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence 444 3566776665555442 34678888888899999999999999988765
No 33
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=20.86 E-value=67 Score=17.23 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHc
Q 041855 63 KSISGKSLRSLRAA 76 (203)
Q Consensus 63 ~~v~~~~~~~L~~~ 76 (203)
.++|+|++++|+..
T Consensus 7 gsiseetkqklk~~ 20 (35)
T 1n6j_G 7 GSISEETKQKLKSA 20 (35)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 47999999999863
No 34
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=20.15 E-value=4.1e+02 Score=22.75 Aligned_cols=53 Identities=23% Similarity=0.110 Sum_probs=39.4
Q ss_pred eEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEec
Q 041855 25 EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84 (203)
Q Consensus 25 ~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~ 84 (203)
...|+ ++..|...++...+..+ .++.+|+++.+++++.++.++..|.+|+.++
T Consensus 176 ~~VV~--aSsGNhG~AlA~aAa~~-----Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~ 228 (430)
T 4aec_A 176 SVLVE--PTSGNTGIGLAFIAASR-----GYRLILTMPASMSMERRVLLKAFGAELVLTD 228 (430)
T ss_dssp CEEEE--ECSSHHHHHHHHHHHHH-----TCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred cEEEE--ECCCHHHHHHHHHHHHh-----CCEEEEEEcCCCCHHHHHHHHHCCCEEEEEC
Confidence 34555 35667776666655443 5677888888899999999999999998775
Done!