BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041860
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-terminal Domain
 pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-terminal Domain
          Length = 256

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 94  HEGALTIPCRPSELERILAERWREG 118
           H G   I  RP EL+++  ER R G
Sbjct: 205 HVGKRKIKLRPEELQKVTGERGRRG 229


>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
           In Complex With Staurosporine
 pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
           In Complex With Staurosporine
          Length = 317

 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 33  MGRKSNSYCDDYVPQDVKEGHF-AVIAVDGHQQK------RFVISLSYLTHPMFLRLLEQ 85
           +G    SY D  + + + +GHF A+  +  H+Q+      R         HP  LRL+  
Sbjct: 37  LGEGGFSYVD--LVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAY 94

Query: 86  AAEEYGFDHEGALTIP 101
              E G  HE  L +P
Sbjct: 95  CLRERGAKHEAWLLLP 110


>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 94  HEGALTIPCRPSELERILAERWREG 118
           H G   I  RP EL+++  ER R G
Sbjct: 675 HVGKRKIKLRPEELQKVTGERGRRG 699


>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
           Adc (Spea) From Escherichia Coli, Northeast Structural
           Genomics Consortium Target Er600
 pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
           Adc (Spea) From Escherichia Coli, Northeast Structural
           Genomics Consortium Target Er600
          Length = 666

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 83  LEQAAEEYGFDHEGALTIPCRPSELERILAERWREGEPAG 122
            ++A E YG++ +  L  P + ++  R++      GEP G
Sbjct: 107 FKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLG 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,326,735
Number of Sequences: 62578
Number of extensions: 119647
Number of successful extensions: 259
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 10
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)