Query 041860
Match_columns 124
No_of_seqs 118 out of 615
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 72.4 6.4 0.00022 25.2 4.6 59 54-116 11-72 (109)
2 2al3_A TUG long isoform; TUG U 58.8 7.7 0.00026 26.4 3.0 38 53-95 11-48 (90)
3 3drz_A BTB/POZ domain-containi 47.7 47 0.0016 22.0 5.6 61 51-116 5-70 (107)
4 1und_A Advillin, P92; actin bi 44.2 4.6 0.00016 23.3 -0.1 19 72-90 1-19 (37)
5 1y74_B MLIN-2/CASK, peripheral 40.3 14 0.00049 21.7 1.7 20 72-91 26-49 (50)
6 1vd2_A Protein kinase C, IOTA 40.0 76 0.0026 21.1 5.6 36 61-100 14-49 (89)
7 2xko_C PIPX, global nitrogen r 38.4 4.2 0.00014 27.9 -1.0 10 72-81 5-14 (89)
8 3ga1_A Nucleus accumbens-assoc 32.0 81 0.0028 20.7 4.7 44 65-115 43-90 (129)
9 2vpk_A Myoneurin; transcriptio 31.2 58 0.002 20.9 3.8 44 65-115 32-80 (116)
10 3nct_A Protein PSIB; DNA bindi 28.0 1.7E+02 0.0057 21.5 6.1 51 44-94 78-130 (144)
11 3n5b_B ASR0485 protein; PII, P 26.7 8.7 0.0003 27.3 -1.0 11 72-82 28-38 (112)
12 1r29_A B-cell lymphoma 6 prote 25.5 69 0.0024 20.9 3.4 47 65-115 39-89 (127)
13 2lkt_A Retinoic acid receptor 23.7 35 0.0012 23.1 1.6 10 52-61 22-31 (125)
14 1zav_U 50S ribosomal protein L 23.4 50 0.0017 17.9 1.9 13 79-91 18-30 (30)
15 1yu8_X Villin; alpha helix, 3- 23.3 17 0.00058 23.4 -0.0 19 72-90 31-49 (67)
16 3pmi_A PWWP domain-containing 22.1 36 0.0012 24.8 1.5 30 62-91 46-78 (134)
17 3qli_A Coenzyme A transferase; 21.3 53 0.0018 27.9 2.6 46 46-92 401-454 (455)
18 1wj6_A KIAA0049 protein, RSGI 21.2 2.1E+02 0.0071 19.7 7.2 53 61-116 22-83 (101)
19 1qzp_A Dematin; villin headpie 21.1 15 0.0005 23.6 -0.7 19 72-90 32-50 (68)
20 1ujs_A Actin-binding LIM prote 20.5 21 0.00073 24.1 0.0 19 72-90 46-64 (88)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=72.38 E-value=6.4 Score=25.24 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEeecCceeeEEEEeeccc--CcHHHHHHHHHHHHhcCCCCCCceEec-CCHHHHHHHHHHHHh
Q 041860 54 FAVIAVDGHQQKRFVISLSYL--THPMFLRLLEQAAEEYGFDHEGALTIP-CRPSELERILAERWR 116 (124)
Q Consensus 54 ~aVyV~~G~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vL~~~~~ 116 (124)
+.+.|++|++.++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+.+.|+.+|.-+--
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt 72 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYS 72 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcC
Confidence 345565555567888888887 5899999997543332 2 678887 599999999886543
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=58.82 E-value=7.7 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.508 Sum_probs=27.1
Q ss_pred eEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHHhcCCCCC
Q 041860 53 HFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE 95 (124)
Q Consensus 53 ~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 95 (124)
++.|.-.+| +|+.|.+. ..-.+.++|++|.+.|||+.+
T Consensus 11 ~v~Vl~~n~---rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 11 AVSVLAPNG---RRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp CEEEECTTS---CEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred EEEEEcCCC---cEEEEEEC--CCCCHHHHHHHHHHHhCCChh
Confidence 344443344 89999883 334678899999999999754
No 3
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=47.66 E-value=47 Score=22.01 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=42.0
Q ss_pred CceEEEEeecCceeeEEEEeecccC-cH--HHHHHHHHHHHhcC--CCCCCceEecCCHHHHHHHHHHHHh
Q 041860 51 EGHFAVIAVDGHQQKRFVISLSYLT-HP--MFLRLLEQAAEEYG--FDHEGALTIPCRPSELERILAERWR 116 (124)
Q Consensus 51 kG~~aVyV~~G~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vL~~~~~ 116 (124)
...+.+.|| | .+|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++||.-.+-
T Consensus 5 ~~~v~LNVG-G---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~ 70 (107)
T 3drz_A 5 SKWVRLNVG-G---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRH 70 (107)
T ss_dssp CCEEEEEET-T---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEC-C---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCC
Confidence 346677783 3 89999987775 34 566664321 1232 3456999999999999999987654
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=44.16 E-value=4.6 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=16.8
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 041860 72 SYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEf 90 (124)
.||+.-.|+.++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 5
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=40.34 E-value=14 Score=21.69 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=15.4
Q ss_pred cccCcHHHHHHHHH----HHHhcC
Q 041860 72 SYLTHPMFLRLLEQ----AAEEYG 91 (124)
Q Consensus 72 ~yL~hP~F~~LL~~----aeeEfG 91 (124)
..|+.|-||.||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57899999999974 556664
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.98 E-value=76 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.3
Q ss_pred CceeeEEEEeecccCcHHHHHHHHHHHHhcCCCCCCceEe
Q 041860 61 GHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTI 100 (124)
Q Consensus 61 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~i 100 (124)
++.-.|+.||. ...|++|.++-.+-|++..+.++++
T Consensus 14 ~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 14 RGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 44577888886 5689999999999999865444444
No 7
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=38.35 E-value=4.2 Score=27.91 Aligned_cols=10 Identities=50% Similarity=0.886 Sum_probs=7.9
Q ss_pred cccCcHHHHH
Q 041860 72 SYLTHPMFLR 81 (124)
Q Consensus 72 ~yL~hP~F~~ 81 (124)
.|||||.|--
T Consensus 5 ~YLNHPtFGl 14 (89)
T 2xko_C 5 NYLNHPTFGL 14 (89)
T ss_dssp CEEEETTTEE
T ss_pred ccccCCccch
Confidence 5999998853
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=31.97 E-value=81 Score=20.73 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=33.6
Q ss_pred eEEEEeecccC--cHHHHHHHHHHHHhcCCCCCCceEec--CCHHHHHHHHHHHH
Q 041860 65 KRFVISLSYLT--HPMFLRLLEQAAEEYGFDHEGALTIP--CRPSELERILAERW 115 (124)
Q Consensus 65 ~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vL~~~~ 115 (124)
++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.+|.-+-
T Consensus 43 ~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iY 90 (129)
T 3ga1_A 43 HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCY 90 (129)
T ss_dssp EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHh
Confidence 56777655554 69999998764 45789996 89999999988653
No 9
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=31.21 E-value=58 Score=20.93 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=32.9
Q ss_pred eEEEEeeccc--CcHHHHHHHHHHHHhcCCCCCCceEec---CCHHHHHHHHHHHH
Q 041860 65 KRFVISLSYL--THPMFLRLLEQAAEEYGFDHEGALTIP---CRPSELERILAERW 115 (124)
Q Consensus 65 ~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP---C~~~~Fe~vL~~~~ 115 (124)
++|-+.-..| ..|.|+.++... .+..+.|+ .+...|+.+|.-+-
T Consensus 32 ~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Y 80 (116)
T 2vpk_A 32 FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIY 80 (116)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHH
T ss_pred EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHc
Confidence 5777776666 579999988653 35678887 68999999987654
No 10
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=27.98 E-value=1.7e+02 Score=21.47 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=42.4
Q ss_pred CCCCCCCCceEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHH--hcCCCC
Q 041860 44 YVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAE--EYGFDH 94 (124)
Q Consensus 44 ~~~~~vpkG~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aee--EfG~~~ 94 (124)
|+|-++-.++++|++-.|.+.=+.+--.+-++--.....|..+++ .+||.+
T Consensus 78 CSpG~~sP~W~~Vl~~~gG~pfavv~~~~~~~Pe~Inh~L~l~a~ld~~Gys~ 130 (144)
T 3nct_A 78 CSPGDVSQVWVLVLVNAGGEPFAVVQVQRRFASEAVSHSLALAASLDTQGYSV 130 (144)
T ss_dssp ECSSSSCSSEEEEEEEGGGCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCH
T ss_pred eCCCCCCcceEEEEEcCCCcEEEEEEecCccCHHHHHHHHHHHHHHhhcCCcH
Confidence 788889999999999888888787777788888888899999875 567764
No 11
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=26.65 E-value=8.7 Score=27.29 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.4
Q ss_pred cccCcHHHHHH
Q 041860 72 SYLTHPMFLRL 82 (124)
Q Consensus 72 ~yL~hP~F~~L 82 (124)
.|||||.|--|
T Consensus 28 ~YLNHPTFGLL 38 (112)
T 3n5b_B 28 TYINHPTWGLL 38 (112)
T ss_dssp CEEEETTTEEE
T ss_pred hhccCCccchh
Confidence 49999998533
No 12
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=25.46 E-value=69 Score=20.88 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=34.9
Q ss_pred eEEEEeeccc--CcHHHHHHHHHHHHhcCCCCCCceEe-c-CCHHHHHHHHHHHH
Q 041860 65 KRFVISLSYL--THPMFLRLLEQAAEEYGFDHEGALTI-P-CRPSELERILAERW 115 (124)
Q Consensus 65 ~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~i-P-C~~~~Fe~vL~~~~ 115 (124)
++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.+|.-+-
T Consensus 39 ~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Y 89 (127)
T 1r29_A 39 EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMY 89 (127)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHc
Confidence 5777776666 679999999754333 3577999 4 68999999987654
No 13
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=23.67 E-value=35 Score=23.13 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=8.4
Q ss_pred ceEEEEeecC
Q 041860 52 GHFAVIAVDG 61 (124)
Q Consensus 52 G~~aVyV~~G 61 (124)
-|.+||||+|
T Consensus 22 ~H~gIYvGdg 31 (125)
T 2lkt_A 22 EHWALYIGDG 31 (125)
T ss_dssp CEEEEEEETT
T ss_pred cEEEEEeCCC
Confidence 3899999877
No 14
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.43 E-value=50 Score=17.93 Aligned_cols=13 Identities=15% Similarity=0.618 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcC
Q 041860 79 FLRLLEQAAEEYG 91 (124)
Q Consensus 79 F~~LL~~aeeEfG 91 (124)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4688888999987
No 15
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=23.31 E-value=17 Score=23.41 Aligned_cols=19 Identities=11% Similarity=0.224 Sum_probs=18.0
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 041860 72 SYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEf 90 (124)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 16
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=22.13 E-value=36 Score=24.79 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=25.5
Q ss_pred ceeeEEEEeecccCc---HHHHHHHHHHHHhcC
Q 041860 62 HQQKRFVISLSYLTH---PMFLRLLEQAAEEYG 91 (124)
Q Consensus 62 ~e~~RfvVp~~yL~h---P~F~~LL~~aeeEfG 91 (124)
.+++=|.||+.-|+| -.-++|+++|.|.|+
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 456789999988877 568999999999987
No 17
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=21.35 E-value=53 Score=27.88 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCCCCceEEEEeec-------Cce-eeEEEEeecccCcHHHHHHHHHHHHhcCC
Q 041860 46 PQDVKEGHFAVIAVD-------GHQ-QKRFVISLSYLTHPMFLRLLEQAAEEYGF 92 (124)
Q Consensus 46 ~~~vpkG~~aVyV~~-------G~e-~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 92 (124)
+...+++++-+.|.+ |.. ++|-.-=++ +.||-|++.|.+.+++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 445688887666643 321 233332234 8999999999998888764
No 18
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.24 E-value=2.1e+02 Score=19.72 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=38.9
Q ss_pred CceeeEEEEeecccCcHHHHHHHHHHHHhcCCC--------CCC-ceEecCCHHHHHHHHHHHHh
Q 041860 61 GHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFD--------HEG-ALTIPCRPSELERILAERWR 116 (124)
Q Consensus 61 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~--------~~G-~L~iPC~~~~Fe~vL~~~~~ 116 (124)
..+.+||.| +++..+.|.+|-.+...-||+. .+| .|+|.= -.+|+.+|....+
T Consensus 22 ~ge~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~S-q~E~eEAlkva~k 83 (101)
T 1wj6_A 22 KNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS-QGEYEEALKMAVK 83 (101)
T ss_dssp TTEEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCS-HHHHHHHHHHHHH
T ss_pred cCCeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEec-HHHHHHHHHHhcc
Confidence 456778865 7889999999999999999953 333 455544 5677778886655
No 19
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.10 E-value=15 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.8
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 041860 72 SYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEf 90 (124)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999987
No 20
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=20.46 E-value=21 Score=24.12 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=18.2
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 041860 72 SYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEf 90 (124)
.||+.-.|++++.|+.+||
T Consensus 46 ~YLSdedF~~vFgMsr~eF 64 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEF 64 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
Done!