Query 041860
Match_columns 124
No_of_seqs 118 out of 615
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 19:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041860.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041860hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 48.9 26 0.0019 21.9 5.9 53 61-116 12-73 (85)
2 d1unda_ a.14.1.1 (A:) Advillin 45.1 2 0.00015 23.4 -0.1 18 73-90 1-18 (36)
3 d2al3a1 d.15.1.2 (A:10-85) Tet 44.9 10 0.00073 23.5 3.3 38 53-95 2-39 (76)
4 d1z3xa2 a.261.1.1 (A:88-235) G 31.5 0.69 5.1E-05 32.4 -4.5 31 46-80 117-147 (148)
5 d1y6ia2 a.261.1.1 (A:83-233) M 30.9 2.1 0.00015 29.9 -2.0 31 46-81 117-148 (151)
6 d1qusa_ d.2.1.6 (A:) 36 kDa so 30.7 15 0.0011 28.1 2.8 24 72-95 14-37 (322)
7 d1oeyj_ d.15.2.2 (J:) Neutroph 28.0 20 0.0014 23.5 2.7 31 61-91 15-45 (105)
8 d1tjya_ c.93.1.1 (A:) AI-2 rec 27.5 27 0.0019 23.4 3.5 29 65-93 4-35 (316)
9 d1t1da_ d.42.1.2 (A:) Shaker p 26.0 16 0.0012 22.8 1.9 57 54-116 3-62 (100)
10 d1y74b1 a.194.1.1 (B:83-132) P 24.7 16 0.0011 21.0 1.5 20 72-91 26-49 (50)
11 d1yu5x1 a.14.1.1 (X:10-76) Vil 24.5 7.3 0.00053 23.7 -0.0 19 72-90 31-49 (67)
12 d1fc4a_ c.67.1.4 (A:) 2-amino- 23.2 40 0.0029 25.1 4.1 35 57-94 40-79 (401)
13 d1mlaa1 c.19.1.1 (A:3-127,A:19 21.7 19 0.0014 25.1 1.8 21 73-93 21-41 (235)
14 d3buxb3 d.93.1.1 (B:264-351) C 21.3 35 0.0025 21.4 2.8 23 68-90 51-73 (88)
15 d1nn7a_ d.42.1.2 (A:) Potassiu 21.2 5.7 0.00041 25.3 -1.1 58 54-117 2-61 (105)
16 d1zavu1 a.108.1.1 (U:1-30) Rib 21.0 22 0.0016 18.2 1.5 19 73-91 12-30 (30)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.92 E-value=26 Score=21.88 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=38.2
Q ss_pred CceeeEEEEeecccCcHHHHHHHHHHHHhcCC--------CCCC-ceEecCCHHHHHHHHHHHHh
Q 041860 61 GHQQKRFVISLSYLTHPMFLRLLEQAAEEYGF--------DHEG-ALTIPCRPSELERILAERWR 116 (124)
Q Consensus 61 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~--------~~~G-~L~iPC~~~~Fe~vL~~~~~ 116 (124)
|++..||.++.. +++.|.+|..+-+.-|+. +.++ -++|.|+.+. +..+..+++
T Consensus 12 ~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl-~E~~~~a~~ 73 (85)
T d2bkfa1 12 KNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY-EEALKMAVK 73 (85)
T ss_dssp TTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHH-HHHHHHHHH
T ss_pred CCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHH-HHHHHHHhc
Confidence 778999998543 478899999999999884 2233 5789998765 445554443
No 2
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.05 E-value=2 Score=23.36 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=16.3
Q ss_pred ccCcHHHHHHHHHHHHhc
Q 041860 73 YLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 73 yL~hP~F~~LL~~aeeEf 90 (124)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999887
No 3
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.92 E-value=10 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=28.2
Q ss_pred eEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHHhcCCCCC
Q 041860 53 HFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE 95 (124)
Q Consensus 53 ~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 95 (124)
++.|...+| +|..|++.= .-...+.|++|.+.|||+.+
T Consensus 2 ~V~Vl~~~~---rR~~VKvtP--~t~l~~VL~eaC~k~~~~~~ 39 (76)
T d2al3a1 2 AVSVLAPNG---RRHTVKVTP--STVLLQVLEDTCRRQDFNPS 39 (76)
T ss_dssp CEEEECTTS---CEEEECCCT--TSBHHHHHHHHHHHTTCCGG
T ss_pred cEEEECCCC---cEEEEEeCC--CcCHHHHHHHHHHHhCCChh
Confidence 456665555 899998753 33578899999999999754
No 4
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.49 E-value=0.69 Score=32.40 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=19.4
Q ss_pred CCCCCCceEEEEeecCceeeEEEEeecccCcHHHH
Q 041860 46 PQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFL 80 (124)
Q Consensus 46 ~~~vpkG~~aVyV~~G~e~~RfvVp~~yL~hP~F~ 80 (124)
+...|+||+|+.- ..+-+.|--.+|+||.|.
T Consensus 117 ~l~AP~GHLP~~~----~lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 117 DLSAPRGHLPLTN----QLRGVQVLNALLNHPAWT 147 (148)
T ss_dssp STTSCTTCCSCCC----CTTCSHHHHHHHTCGGGG
T ss_pred cCCCCCCCCCcCC----ccchHHHHHHHhcCcccc
Confidence 3358999999854 123333344678888763
No 5
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=30.91 E-value=2.1 Score=29.90 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=19.7
Q ss_pred CCCCCCceEEEEee-cCceeeEEEEeecccCcHHHHH
Q 041860 46 PQDVKEGHFAVIAV-DGHQQKRFVISLSYLTHPMFLR 81 (124)
Q Consensus 46 ~~~vpkG~~aVyV~-~G~e~~RfvVp~~yL~hP~F~~ 81 (124)
+...|+||+|+.-. -|- -+--..|+||.|.+
T Consensus 117 ~l~AP~GHLP~~~~lrG~-----~~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 117 DLSAPQGHLPLLNQLRGV-----RVAESLYRHPVWSQ 148 (151)
T ss_dssp STTSCTTCCSCCCCTTCT-----HHHHHHHTSTHHHH
T ss_pred cCCCCCCCCCccchhhhH-----HHHHHHHcCcchhh
Confidence 33589999998641 121 12335889999864
No 6
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=30.70 E-value=15 Score=28.08 Aligned_cols=24 Identities=17% Similarity=0.529 Sum_probs=22.0
Q ss_pred cccCcHHHHHHHHHHHHhcCCCCC
Q 041860 72 SYLTHPMFLRLLEQAAEEYGFDHE 95 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEfG~~~~ 95 (124)
+|.+||.|+++++...+++||+.+
T Consensus 14 dya~~p~v~~Fi~~la~~~G~s~~ 37 (322)
T d1qusa_ 14 DFANNPNAQQFIDKMVNKHGFDRQ 37 (322)
T ss_dssp TTTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcccCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999754
No 7
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.99 E-value=20 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.6
Q ss_pred CceeeEEEEeecccCcHHHHHHHHHHHHhcC
Q 041860 61 GHQQKRFVISLSYLTHPMFLRLLEQAAEEYG 91 (124)
Q Consensus 61 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG 91 (124)
|...+=..|.-++-..|.|.+||..-.++|+
T Consensus 15 ~~~~rDI~veedl~~~P~ykdLl~lmr~~f~ 45 (105)
T d1oeyj_ 15 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ 45 (105)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC
T ss_pred cceeeeEEEccccccCccHHHHHHHHHHHhc
Confidence 3345677888899999999999999999996
No 8
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=27.53 E-value=27 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=21.7
Q ss_pred eEEEEeecccCcHHHHHHHHH---HHHhcCCC
Q 041860 65 KRFVISLSYLTHPMFLRLLEQ---AAEEYGFD 93 (124)
Q Consensus 65 ~RfvVp~~yL~hP~F~~LL~~---aeeEfG~~ 93 (124)
+|..+=+..++||.|+.+.+- +.+++||+
T Consensus 4 ~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 566666788999999998655 55677874
No 9
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=25.98 E-value=16 Score=22.84 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=37.3
Q ss_pred EEEEeecCceeeEEEEeecccCc-H--HHHHHHHHHHHhcCCCCCCceEecCCHHHHHHHHHHHHh
Q 041860 54 FAVIAVDGHQQKRFVISLSYLTH-P--MFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWR 116 (124)
Q Consensus 54 ~aVyV~~G~e~~RfvVp~~yL~h-P--~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vL~~~~~ 116 (124)
+.+.| +| .+|.+..+-|.. | .+..|... ..+--+.+|.+-|--+...|++||.=.+.
T Consensus 3 I~LNV-GG---~~f~t~~~tL~~~p~s~l~~l~~~--~~~~~~~~g~~FiDRdp~~F~~IL~flR~ 62 (100)
T d1t1da_ 3 VVINV-SG---LRFETQLKTLNQFPDTLLGNPQKR--NRYYDPLRNEYFFDRNRPSFDAILYFYQS 62 (100)
T ss_dssp EEEEE-TT---EEEEEEHHHHHTSTTSTTTCHHHH--GGGEETTTTEEEECSCSTTHHHHHHHHHT
T ss_pred EEEEE-CC---EEEEEeHHHHhhCCCchhHHHHhC--CCcCCCCCCeEEEecCHHHHHHHHHHHhc
Confidence 45667 33 899998776654 3 33333321 11112456999999999999999987654
No 10
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.67 E-value=16 Score=21.01 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=15.1
Q ss_pred cccCcHHHHHHHHH----HHHhcC
Q 041860 72 SYLTHPMFLRLLEQ----AAEEYG 91 (124)
Q Consensus 72 ~yL~hP~F~~LL~~----aeeEfG 91 (124)
..|+.|-|+.||.- |.+.||
T Consensus 26 ~lL~~PH~~aLL~aHD~VA~k~Y~ 49 (50)
T d1y74b1 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHhcc
Confidence 46889999999974 555555
No 11
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.54 E-value=7.3 Score=23.67 Aligned_cols=19 Identities=11% Similarity=0.224 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 041860 72 SYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 72 ~yL~hP~F~~LL~~aeeEf 90 (124)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 12
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=23.22 E-value=40 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=25.4
Q ss_pred EeecCceeeEEE--Eeeccc---CcHHHHHHHHHHHHhcCCCC
Q 041860 57 IAVDGHQQKRFV--ISLSYL---THPMFLRLLEQAAEEYGFDH 94 (124)
Q Consensus 57 yV~~G~e~~Rfv--Vp~~yL---~hP~F~~LL~~aeeEfG~~~ 94 (124)
.+.|| ++|+ ..-+|| +||.+++....+-+.||...
T Consensus 40 ~~~dG---~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 40 TVADG---SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp EBTTS---CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred EecCC---CEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 34467 5554 233666 39999999999999999754
No 13
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]}
Probab=21.65 E-value=19 Score=25.15 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.2
Q ss_pred ccCcHHHHHHHHHHHHhcCCC
Q 041860 73 YLTHPMFLRLLEQAAEEYGFD 93 (124)
Q Consensus 73 yL~hP~F~~LL~~aeeEfG~~ 93 (124)
|-++|.|++.++++.+.+|++
T Consensus 21 ~~~~p~~r~~~~~~~~~l~~~ 41 (235)
T d1mlaa1 21 AASYPIVEETFAEASAALGYD 41 (235)
T ss_dssp HHHCHHHHHHHHHHHHHHTSC
T ss_pred HHCCHHHHHHHHHHHHHhCCC
Confidence 446899999999999999875
No 14
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=35 Score=21.44 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEeecccCcHHHHHHHHHHHHhc
Q 041860 68 VISLSYLTHPMFLRLLEQAAEEY 90 (124)
Q Consensus 68 vVp~~yL~hP~F~~LL~~aeeEf 90 (124)
++-+-=.|.|++|+|++-.+|-|
T Consensus 51 IlQTIp~nk~L~qaLidG~reGf 73 (88)
T d3buxb3 51 ILQTIPHNKPLFQALIDGFREGF 73 (88)
T ss_dssp EEEECCSSCCHHHHHHHHHHHTS
T ss_pred eeeeccCccHHHHHHHhccccee
Confidence 45556689999999999999976
No 15
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.16 E-value=5.7 Score=25.27 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=37.6
Q ss_pred EEEEeecCceeeEEEEeeccc-CcHHHHHHHHHHHHhcCC-CCCCceEecCCHHHHHHHHHHHHhc
Q 041860 54 FAVIAVDGHQQKRFVISLSYL-THPMFLRLLEQAAEEYGF-DHEGALTIPCRPSELERILAERWRE 117 (124)
Q Consensus 54 ~aVyV~~G~e~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~-~~~G~L~iPC~~~~Fe~vL~~~~~~ 117 (124)
+.+.| +| .+|.+..+-| ++|.. +|.......-+ +.+|.+-|--+...|++||.-.+..
T Consensus 2 I~LNV-GG---~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G 61 (105)
T d1nn7a_ 2 IVLNV-SG---TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTG 61 (105)
T ss_dssp EEEEE-TT---EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHS
T ss_pred EEEEE-CC---EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcC
Confidence 45667 33 8999998866 45431 12222222223 3458999999999999999877643
No 16
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.00 E-value=22 Score=18.17 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.0
Q ss_pred ccCcHHHHHHHHHHHHhcC
Q 041860 73 YLTHPMFLRLLEQAAEEYG 91 (124)
Q Consensus 73 yL~hP~F~~LL~~aeeEfG 91 (124)
-|.-....+|+++.|+.||
T Consensus 12 kltvaelaelvk~ledkfg 30 (30)
T d1zavu1 12 KLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HSBHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHhhcC
Confidence 3455678899999999987
Done!