BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041861
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
          Length = 322

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 7   NSFLADFHLCYGYWRKACC---------ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
           NS   DF     YW KA C          L  R  ++      +  Y  D ++H   + S
Sbjct: 49  NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGS 108

Query: 58  E 58
           E
Sbjct: 109 E 109


>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
 pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
 pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
           Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
           Inhibitor
 pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
           Inhibitor
 pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
           Ac-Tivity Of Strictosidine Synthase (Str1): From The
           Common Tryp-Toline Skeleton To The Rare
           Piperazino-Indole Framework
 pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
           Ac-Tivity Of Strictosidine Synthase (Str1): From The
           Common Tryp-Toline Skeleton To The Rare
           Piperazino-Indole Framework
          Length = 322

 Score = 25.0 bits (53), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 7   NSFLADFHLCYGYWRKACC---------ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
           NS   DF     YW KA C          L  R  ++      +  Y  D ++H   + S
Sbjct: 49  NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 108

Query: 58  E 58
           E
Sbjct: 109 E 109


>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
           Strictosidine
 pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
           Strictosidine
          Length = 302

 Score = 25.0 bits (53), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 7   NSFLADFHLCYGYWRKACC---------ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
           NS   DF     YW KA C          L  R  ++      +  Y  D ++H   + S
Sbjct: 40  NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 99

Query: 58  E 58
           E
Sbjct: 100 E 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,169,365
Number of Sequences: 62578
Number of extensions: 57956
Number of successful extensions: 132
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)