BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041861
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 3 RLVYNSFLADFHLCYGYWRK-----ACCALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
R +++FLA + CYGYW+K + EV+ + +Q+ T S D+W HY N
Sbjct: 90 RKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLK 149
Query: 58 EV--PPD 62
E P D
Sbjct: 150 ETLDPAD 156
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHY 52
R Y++FL+ + CYGYWRK + +VFE+ +++ S D+W HY
Sbjct: 399 REAYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHY 453
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 3 RLVYNSFLADFHLCYGYWRKACC-----ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
R ++ F + CYGYW+K + + EV+ + +Q+ S D+W HY N
Sbjct: 113 RKAFDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLK 172
Query: 58 EVPPDGHRKS 67
E G +++
Sbjct: 173 ETLEPGDQET 182
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLA 56
+R VY+ FL + L +GYW+K A ++E+ + +S D+W +YC
Sbjct: 57 LRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFK 116
Query: 57 SEVPPDGHRKSE 68
E D + E
Sbjct: 117 METNGDANEVRE 128
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 3 RLVYNSFLADFHLCYGYWRKACC-----ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
R ++ F + CYGYW+K + EV+ + +Q+ S D+W HY N
Sbjct: 115 RKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLK 174
Query: 58 EVPPDG 63
E G
Sbjct: 175 ETLDPG 180
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 3 RLVYNSFLADFHLCYGYWRKACC-----ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57
R +++F + CYGYW+K + EV+ + +Q+ S D+W HY
Sbjct: 186 RKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLR 245
Query: 58 E 58
E
Sbjct: 246 E 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,415,542
Number of Sequences: 539616
Number of extensions: 699488
Number of successful extensions: 1920
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1906
Number of HSP's gapped (non-prelim): 9
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)