Query 041861
Match_columns 73
No_of_seqs 101 out of 171
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1258 mRNA processing protei 99.9 1.8E-24 3.9E-29 169.3 7.4 70 2-71 64-140 (577)
2 PF05843 Suf: Suppressor of fo 99.2 2.3E-11 4.9E-16 87.2 6.5 70 2-71 20-96 (280)
3 KOG1915 Cell cycle control pro 99.0 1E-09 2.2E-14 86.7 6.9 68 3-70 308-391 (677)
4 smart00386 HAT HAT (Half-A-TPR 98.9 4E-09 8.6E-14 51.7 4.1 32 26-57 1-32 (33)
5 PF05843 Suf: Suppressor of fo 98.7 3.4E-08 7.3E-13 70.9 6.6 71 2-72 55-134 (280)
6 KOG1914 mRNA cleavage and poly 98.7 3.9E-08 8.5E-13 78.3 6.6 58 2-60 38-100 (656)
7 KOG1915 Cell cycle control pro 98.3 1.6E-06 3.4E-11 69.0 6.4 68 3-70 59-132 (677)
8 COG5107 RNA14 Pre-mRNA 3'-end 98.2 3E-06 6.5E-11 67.2 5.5 61 2-63 61-126 (660)
9 KOG2047 mRNA splicing factor [ 98.0 1.9E-05 4.2E-10 64.4 6.9 69 2-70 45-127 (835)
10 PF08424 NRDE-2: NRDE-2, neces 97.6 0.00038 8.3E-09 51.0 7.6 67 4-70 52-127 (321)
11 PF13428 TPR_14: Tetratricopep 97.4 0.00046 9.9E-09 36.7 4.4 34 20-53 4-42 (44)
12 PF02184 HAT: HAT (Half-A-TPR) 97.2 0.00059 1.3E-08 35.8 3.2 30 27-57 2-31 (32)
13 PF13432 TPR_16: Tetratricopep 97.1 0.0011 2.4E-08 36.9 4.3 42 3-44 17-63 (65)
14 KOG0495 HAT repeat protein [RN 97.1 0.0017 3.8E-08 53.6 6.7 66 5-70 673-744 (913)
15 KOG1070 rRNA processing protei 97.0 0.0023 5E-08 55.9 6.3 68 4-71 1445-1523(1710)
16 PF08424 NRDE-2: NRDE-2, neces 96.9 0.0067 1.5E-07 44.4 7.8 67 4-70 6-90 (321)
17 PF14559 TPR_19: Tetratricopep 96.9 0.0028 6E-08 35.3 4.5 44 4-47 12-60 (68)
18 KOG2047 mRNA splicing factor [ 96.9 0.0031 6.7E-08 51.9 6.1 55 5-59 15-73 (835)
19 KOG1070 rRNA processing protei 96.8 0.0045 9.8E-08 54.2 6.9 69 3-71 1550-1660(1710)
20 KOG0495 HAT repeat protein [RN 96.8 0.0067 1.5E-07 50.2 7.4 64 8-71 575-644 (913)
21 KOG2396 HAT (Half-A-TPR) repea 96.7 0.0054 1.2E-07 49.1 6.5 56 2-57 124-185 (568)
22 cd00189 TPR Tetratricopeptide 96.7 0.021 4.5E-07 30.4 6.7 68 3-70 20-93 (100)
23 KOG2396 HAT (Half-A-TPR) repea 96.6 0.0099 2.1E-07 47.6 7.3 67 4-70 92-165 (568)
24 KOG0128 RNA-binding protein SA 96.6 0.011 2.4E-07 49.3 7.4 67 3-70 133-215 (881)
25 PF14559 TPR_19: Tetratricopep 96.5 0.014 2.9E-07 32.4 5.4 47 25-71 4-51 (68)
26 PF13429 TPR_15: Tetratricopep 96.4 0.0096 2.1E-07 41.6 5.5 59 12-70 141-205 (280)
27 smart00386 HAT HAT (Half-A-TPR 96.4 0.0057 1.2E-07 29.1 3.1 23 2-24 6-28 (33)
28 KOG1258 mRNA processing protei 96.4 0.022 4.7E-07 45.9 7.7 69 3-71 99-177 (577)
29 PF13432 TPR_16: Tetratricopep 96.4 0.0092 2E-07 33.1 4.2 47 25-71 10-57 (65)
30 TIGR02521 type_IV_pilW type IV 96.3 0.055 1.2E-06 34.4 8.1 67 4-70 52-124 (234)
31 TIGR02552 LcrH_SycD type III s 96.2 0.06 1.3E-06 33.1 7.6 66 4-69 38-109 (135)
32 PRK10370 formate-dependent nit 96.2 0.057 1.2E-06 37.0 8.1 67 4-70 60-135 (198)
33 PRK15359 type III secretion sy 96.1 0.049 1.1E-06 35.3 7.3 67 4-70 45-117 (144)
34 TIGR02917 PEP_TPR_lipo putativ 96.0 0.055 1.2E-06 41.0 8.1 69 3-71 823-897 (899)
35 PF13429 TPR_15: Tetratricopep 95.9 0.025 5.3E-07 39.5 5.5 68 3-70 200-273 (280)
36 PF13371 TPR_9: Tetratricopept 95.9 0.037 8.1E-07 31.0 5.3 42 4-45 16-62 (73)
37 PF13371 TPR_9: Tetratricopept 95.8 0.028 6.1E-07 31.5 4.4 46 25-70 8-54 (73)
38 TIGR02521 type_IV_pilW type IV 95.6 0.16 3.5E-06 32.2 7.9 47 4-50 156-207 (234)
39 TIGR00990 3a0801s09 mitochondr 95.5 0.095 2.1E-06 40.8 7.9 68 3-70 419-492 (615)
40 PRK12370 invasion protein regu 95.3 0.13 2.9E-06 39.9 7.9 67 4-70 325-397 (553)
41 TIGR02917 PEP_TPR_lipo putativ 95.2 0.17 3.6E-06 38.4 8.1 67 4-70 622-694 (899)
42 KOG1914 mRNA cleavage and poly 95.0 0.082 1.8E-06 43.0 6.2 65 7-71 10-79 (656)
43 COG5191 Uncharacterized conser 95.0 0.025 5.5E-07 43.7 3.2 56 2-57 126-187 (435)
44 KOG0128 RNA-binding protein SA 95.0 0.039 8.4E-07 46.2 4.4 57 3-59 332-394 (881)
45 TIGR00990 3a0801s09 mitochondr 94.5 0.27 5.8E-06 38.3 7.9 66 4-69 352-423 (615)
46 PF13414 TPR_11: TPR repeat; P 94.5 0.17 3.7E-06 28.0 5.1 53 18-70 4-63 (69)
47 COG5191 Uncharacterized conser 94.5 0.024 5.1E-07 43.8 1.9 61 10-70 100-167 (435)
48 cd00189 TPR Tetratricopeptide 94.2 0.27 5.8E-06 25.9 5.3 46 25-70 13-59 (100)
49 PRK10803 tol-pal system protei 94.1 0.54 1.2E-05 34.0 8.1 68 3-70 163-242 (263)
50 PRK11189 lipoprotein NlpI; Pro 94.0 0.53 1.2E-05 33.7 8.0 49 4-52 85-138 (296)
51 PLN03088 SGT1, suppressor of 93.9 0.53 1.1E-05 34.9 8.1 68 3-70 22-95 (356)
52 PRK10049 pgaA outer membrane p 93.7 0.5 1.1E-05 38.2 8.2 62 3-65 103-170 (765)
53 PF13174 TPR_6: Tetratricopept 93.4 0.16 3.4E-06 24.2 3.2 21 25-45 13-33 (33)
54 PRK15174 Vi polysaccharide exp 93.2 0.69 1.5E-05 36.9 8.1 67 3-69 270-342 (656)
55 PRK10049 pgaA outer membrane p 93.2 0.63 1.4E-05 37.6 7.9 67 3-69 379-451 (765)
56 PRK15174 Vi polysaccharide exp 93.1 0.77 1.7E-05 36.7 8.2 67 3-69 96-168 (656)
57 PRK09782 bacteriophage N4 rece 92.9 0.72 1.6E-05 39.1 8.1 64 5-68 631-700 (987)
58 TIGR03302 OM_YfiO outer membra 92.3 1.7 3.7E-05 29.2 8.0 70 3-72 135-230 (235)
59 PRK15179 Vi polysaccharide bio 92.1 0.98 2.1E-05 37.0 7.8 46 25-70 167-213 (694)
60 PF12895 Apc3: Anaphase-promot 92.1 1.3 2.7E-05 25.6 6.4 67 3-70 9-83 (84)
61 TIGR02795 tol_pal_ybgF tol-pal 91.8 1.6 3.4E-05 25.5 8.0 68 3-70 22-101 (119)
62 PRK10803 tol-pal system protei 91.8 0.55 1.2E-05 33.9 5.5 44 3-46 200-251 (263)
63 PRK12370 invasion protein regu 91.8 1.4 3E-05 34.3 8.0 46 3-48 358-408 (553)
64 PRK11788 tetratricopeptide rep 91.7 1.6 3.4E-05 31.1 7.7 46 25-70 193-239 (389)
65 PRK09782 bacteriophage N4 rece 91.4 1.4 3E-05 37.4 8.1 67 3-70 596-668 (987)
66 PRK15359 type III secretion sy 90.8 1.2 2.5E-05 28.8 5.8 50 3-52 78-132 (144)
67 PF13431 TPR_17: Tetratricopep 90.7 0.43 9.3E-06 24.2 3.0 30 35-64 2-32 (34)
68 TIGR02795 tol_pal_ybgF tol-pal 90.6 1.2 2.5E-05 26.1 5.3 44 3-46 59-110 (119)
69 PRK11447 cellulose synthase su 90.6 1.9 4E-05 36.5 8.1 65 3-67 481-551 (1157)
70 COG3063 PilF Tfp pilus assembl 90.5 1.7 3.7E-05 32.0 6.9 69 2-70 54-128 (250)
71 PF07719 TPR_2: Tetratricopept 89.4 0.95 2.1E-05 21.5 3.5 26 19-44 3-33 (34)
72 TIGR02552 LcrH_SycD type III s 89.1 2.6 5.7E-05 25.6 6.2 66 5-70 5-76 (135)
73 PRK11788 tetratricopeptide rep 88.8 4 8.7E-05 29.1 7.8 67 3-69 200-273 (389)
74 PRK15363 pathogenicity island 88.8 4.3 9.4E-05 27.8 7.5 45 3-47 55-104 (157)
75 PRK10866 outer membrane biogen 88.6 2.1 4.5E-05 30.3 6.1 53 3-57 52-112 (243)
76 PF13414 TPR_11: TPR repeat; P 88.5 2.4 5.2E-05 23.1 5.2 41 3-43 23-69 (69)
77 PRK10370 formate-dependent nit 88.4 5 0.00011 27.3 7.7 68 3-70 93-169 (198)
78 PRK11447 cellulose synthase su 88.3 3.1 6.6E-05 35.2 7.8 66 4-69 624-695 (1157)
79 COG5107 RNA14 Pre-mRNA 3'-end 88.2 1.2 2.6E-05 36.1 5.1 66 2-70 287-358 (660)
80 PRK15179 Vi polysaccharide bio 87.3 4.6 9.9E-05 33.2 8.0 68 3-70 106-179 (694)
81 PLN03088 SGT1, suppressor of 86.4 5.3 0.00012 29.6 7.4 56 3-58 56-118 (356)
82 PF13431 TPR_17: Tetratricopep 85.4 1.1 2.3E-05 22.7 2.4 28 6-33 2-34 (34)
83 PF13176 TPR_7: Tetratricopept 85.4 1.4 3.1E-05 22.1 2.9 15 25-39 12-26 (36)
84 smart00028 TPR Tetratricopepti 85.3 2 4.4E-05 18.3 3.2 25 19-43 3-32 (34)
85 COG4508 Dimeric dUTPase [Carbo 85.2 1.3 2.7E-05 30.5 3.3 45 14-59 47-91 (161)
86 PRK11189 lipoprotein NlpI; Pro 84.5 7.7 0.00017 27.7 7.3 66 5-70 48-123 (296)
87 PF08311 Mad3_BUB1_I: Mad3/BUB 84.2 8.8 0.00019 24.7 7.4 67 2-70 45-124 (126)
88 PF03704 BTAD: Bacterial trans 83.8 3.2 6.8E-05 26.1 4.6 47 25-71 75-122 (146)
89 PF09295 ChAPs: ChAPs (Chs5p-A 83.0 9 0.0002 29.5 7.5 64 3-69 189-258 (395)
90 PF03704 BTAD: Bacterial trans 82.4 5.6 0.00012 24.9 5.3 40 3-42 82-126 (146)
91 cd05804 StaR_like StaR_like; a 82.1 9.4 0.0002 26.9 6.8 67 4-70 135-211 (355)
92 PF13512 TPR_18: Tetratricopep 81.6 5.1 0.00011 27.0 5.1 54 3-58 30-91 (142)
93 PF08311 Mad3_BUB1_I: Mad3/BUB 81.6 2.3 5.1E-05 27.4 3.3 27 13-39 98-126 (126)
94 TIGR00540 hemY_coli hemY prote 80.7 13 0.00029 27.6 7.5 67 3-70 319-395 (409)
95 PF13181 TPR_8: Tetratricopept 80.4 4.4 9.6E-05 19.2 3.5 19 25-43 14-32 (34)
96 TIGR03302 OM_YfiO outer membra 80.3 6.7 0.00014 26.2 5.4 45 3-47 53-105 (235)
97 COG4783 Putative Zn-dependent 79.3 16 0.00035 29.3 7.9 64 3-66 326-395 (484)
98 PF04733 Coatomer_E: Coatomer 79.0 8.2 0.00018 28.1 5.8 67 4-70 188-261 (290)
99 TIGR00540 hemY_coli hemY prote 76.7 20 0.00043 26.7 7.4 69 4-72 139-214 (409)
100 PF13424 TPR_12: Tetratricopep 76.4 9.5 0.00021 21.2 4.5 27 14-40 2-33 (78)
101 PF13525 YfiO: Outer membrane 75.7 17 0.00037 24.5 6.4 45 3-47 25-77 (203)
102 PF12688 TPR_5: Tetratrico pep 74.8 19 0.00042 23.1 6.2 43 17-59 38-88 (120)
103 PF15297 CKAP2_C: Cytoskeleton 74.7 5.1 0.00011 30.8 3.9 45 3-47 123-175 (353)
104 PRK02603 photosystem I assembl 74.5 21 0.00045 23.2 7.4 54 4-57 56-117 (172)
105 PF00515 TPR_1: Tetratricopept 74.4 6.7 0.00014 18.7 3.1 19 25-43 14-32 (34)
106 PF09976 TPR_21: Tetratricopep 73.3 15 0.00032 23.2 5.3 43 2-44 30-80 (145)
107 PF12688 TPR_5: Tetratrico pep 71.5 24 0.00052 22.6 6.0 46 25-70 14-63 (120)
108 cd05804 StaR_like StaR_like; a 70.2 20 0.00044 25.1 5.9 46 25-70 127-173 (355)
109 CHL00033 ycf3 photosystem I as 69.8 24 0.00052 22.6 5.8 20 25-44 48-67 (168)
110 PRK10747 putative protoheme IX 69.4 41 0.00088 25.0 7.6 66 4-70 315-386 (398)
111 PRK10866 outer membrane biogen 69.0 18 0.00039 25.5 5.4 46 25-71 45-95 (243)
112 KOG3060 Uncharacterized conser 69.0 15 0.00032 27.7 5.1 48 5-52 176-232 (289)
113 TIGR02996 rpt_mate_G_obs repea 67.2 11 0.00024 20.7 3.1 37 33-69 3-40 (42)
114 COG1729 Uncharacterized protei 63.6 21 0.00045 26.4 5.0 45 2-46 160-212 (262)
115 PF12672 DUF3793: Protein of u 63.5 2.5 5.5E-05 29.0 0.2 21 15-37 132-152 (176)
116 PLN03098 LPA1 LOW PSII ACCUMUL 60.9 39 0.00085 26.9 6.3 38 4-41 96-141 (453)
117 KOG2076 RNA polymerase III tra 60.9 31 0.00068 29.7 6.0 46 13-58 203-253 (895)
118 COG4235 Cytochrome c biogenesi 60.8 59 0.0013 24.4 7.0 54 6-59 145-203 (287)
119 PLN02789 farnesyltranstransfer 59.9 36 0.00078 25.2 5.7 49 4-52 58-112 (320)
120 PF13525 YfiO: Outer membrane 59.1 22 0.00048 24.0 4.2 46 25-71 18-68 (203)
121 KOG2076 RNA polymerase III tra 58.4 25 0.00055 30.2 5.1 64 7-70 438-508 (895)
122 COG4783 Putative Zn-dependent 58.1 26 0.00056 28.2 4.9 48 4-51 361-413 (484)
123 PRK04387 hypothetical protein; 54.4 26 0.00056 22.1 3.6 44 25-72 20-64 (90)
124 PF04184 ST7: ST7 protein; In 53.7 18 0.0004 29.3 3.5 36 7-42 192-230 (539)
125 PF13512 TPR_18: Tetratricopep 53.6 42 0.00091 22.6 4.8 46 25-71 23-73 (142)
126 PRK14574 hmsH outer membrane p 52.1 38 0.00082 28.5 5.2 46 25-70 429-475 (822)
127 COG3063 PilF Tfp pilus assembl 51.9 47 0.001 24.6 5.1 46 25-70 48-94 (250)
128 PF13374 TPR_10: Tetratricopep 48.2 20 0.00043 17.2 2.0 17 25-41 15-31 (42)
129 PRK14574 hmsH outer membrane p 47.9 1.1E+02 0.0023 25.9 7.2 55 4-59 157-216 (822)
130 PF09295 ChAPs: ChAPs (Chs5p-A 47.8 1.1E+02 0.0025 23.6 6.9 53 6-58 223-280 (395)
131 TIGR02568 LcrE type III secret 47.3 43 0.00092 23.8 4.3 39 2-40 156-198 (240)
132 PF09796 QCR10: Ubiquinol-cyto 46.9 6.9 0.00015 23.2 0.1 18 5-22 38-55 (64)
133 PLN03218 maturation of RBCL 1; 45.5 56 0.0012 28.3 5.3 47 25-71 592-640 (1060)
134 PLN02789 farnesyltranstransfer 45.0 90 0.002 23.1 5.8 46 6-51 131-181 (320)
135 smart00777 Mad3_BUB1_I Mad3/BU 44.4 88 0.0019 20.4 6.3 22 48-69 101-123 (125)
136 PF05256 UPF0223: Uncharacteri 44.3 38 0.00083 21.2 3.2 56 13-73 5-65 (88)
137 PF12569 NARP1: NMDA receptor- 42.9 37 0.0008 27.1 3.7 41 18-58 193-240 (517)
138 PRK15331 chaperone protein Sic 42.6 72 0.0016 22.0 4.7 38 4-41 58-100 (165)
139 PRK10747 putative protoheme IX 42.4 1.4E+02 0.0031 22.2 7.8 46 8-54 254-304 (398)
140 PF10579 Rapsyn_N: Rapsyn N-te 41.4 40 0.00087 20.8 2.9 27 25-51 19-45 (80)
141 KOG1129 TPR repeat-containing 41.2 44 0.00095 26.5 3.8 48 4-51 244-295 (478)
142 KOG3060 Uncharacterized conser 40.6 1.6E+02 0.0034 22.3 6.4 49 6-54 143-196 (289)
143 PLN03098 LPA1 LOW PSII ACCUMUL 40.0 70 0.0015 25.5 4.7 35 14-48 72-111 (453)
144 PLN03077 Protein ECB2; Provisi 39.3 67 0.0014 26.2 4.7 42 25-70 537-579 (857)
145 CHL00033 ycf3 photosystem I as 38.7 1E+02 0.0023 19.6 7.8 49 4-52 56-112 (168)
146 KOG0553 TPR repeat-containing 38.3 60 0.0013 24.6 4.0 40 18-58 147-194 (304)
147 KOG1129 TPR repeat-containing 36.7 2.1E+02 0.0045 22.9 6.8 42 6-47 279-325 (478)
148 PRK10153 DNA-binding transcrip 36.4 94 0.002 24.6 5.0 45 25-70 433-478 (517)
149 KOG4642 Chaperone-dependent E3 34.7 53 0.0012 24.7 3.2 43 5-47 32-79 (284)
150 PF12631 GTPase_Cys_C: Catalyt 34.4 90 0.0019 18.0 3.6 44 28-71 18-72 (73)
151 PF01535 PPR: PPR repeat; Int 34.2 51 0.0011 14.7 2.2 16 25-40 13-28 (31)
152 TIGR01987 HI0074 nucleotidyltr 34.1 1.3E+02 0.0029 19.4 5.7 66 5-70 26-106 (123)
153 KOG2002 TPR-containing nuclear 34.1 2.3E+02 0.0051 25.0 7.2 63 4-66 363-434 (1018)
154 PF10300 DUF3808: Protein of u 33.1 98 0.0021 24.0 4.6 37 3-40 253-295 (468)
155 PRK14720 transcript cleavage f 32.4 64 0.0014 27.8 3.7 37 14-50 28-69 (906)
156 PLN03081 pentatricopeptide (PP 32.2 58 0.0013 25.9 3.3 45 23-70 370-416 (697)
157 PRK12522 RNA polymerase sigma 32.0 1.2E+02 0.0025 19.5 4.2 39 3-42 2-45 (173)
158 PHA03396 lef-9 late expression 31.8 1.6E+02 0.0035 23.8 5.6 40 3-42 312-352 (493)
159 PRK02603 photosystem I assembl 31.7 1.4E+02 0.0031 19.1 6.4 45 25-69 48-96 (172)
160 PF07720 TPR_3: Tetratricopept 31.7 79 0.0017 16.1 2.8 19 18-36 2-25 (36)
161 PF06552 TOM20_plant: Plant sp 31.7 1.9E+02 0.0041 20.5 7.6 69 2-70 10-98 (186)
162 PRK15338 type III secretion sy 31.4 1.1E+02 0.0024 23.8 4.5 46 2-47 186-239 (372)
163 PF07721 TPR_4: Tetratricopept 30.8 36 0.00079 15.7 1.2 13 25-37 14-26 (26)
164 KOG1155 Anaphase-promoting com 29.9 1.2E+02 0.0027 24.8 4.7 45 3-47 247-297 (559)
165 KOG4626 O-linked N-acetylgluco 29.5 1.9E+02 0.0042 24.9 5.9 49 11-59 110-163 (966)
166 PF10300 DUF3808: Protein of u 29.4 1.3E+02 0.0028 23.4 4.7 44 26-70 247-292 (468)
167 PRK05602 RNA polymerase sigma 29.4 1.4E+02 0.0031 19.3 4.4 36 4-40 20-60 (186)
168 PF07105 DUF1367: Protein of u 29.3 30 0.00065 24.7 1.1 15 7-21 48-62 (196)
169 KOG1128 Uncharacterized conser 28.9 87 0.0019 26.7 3.8 53 5-57 507-564 (777)
170 KOG4626 O-linked N-acetylgluco 28.7 3.5E+02 0.0076 23.4 7.2 43 5-47 308-355 (966)
171 PF10602 RPN7: 26S proteasome 28.1 1.6E+02 0.0035 19.7 4.5 42 25-66 49-94 (177)
172 PF05094 LEF-9: Late expressio 27.8 1.9E+02 0.0041 23.3 5.3 40 3-42 309-349 (487)
173 PRK09649 RNA polymerase sigma 27.8 1.6E+02 0.0035 19.2 4.4 36 4-41 24-64 (185)
174 TIGR03504 FimV_Cterm FimV C-te 27.7 94 0.002 16.7 2.7 17 25-41 12-28 (44)
175 cd03074 PDI_b'_Calsequestrin_C 27.0 33 0.00071 22.8 0.9 13 12-24 64-76 (120)
176 PF11846 DUF3366: Domain of un 27.0 1.9E+02 0.0042 19.1 5.1 39 4-43 132-175 (193)
177 cd02680 MIT_calpain7_2 MIT: do 26.5 59 0.0013 19.5 1.9 18 25-42 19-36 (75)
178 PF08631 SPO22: Meiosis protei 26.5 2E+02 0.0044 20.3 5.0 39 18-58 129-167 (278)
179 PLN03218 maturation of RBCL 1; 26.3 1.8E+02 0.004 25.3 5.4 46 25-70 697-744 (1060)
180 TIGR00756 PPR pentatricopeptid 26.0 76 0.0017 14.1 2.4 16 25-40 13-28 (35)
181 PF11922 DUF3440: Domain of un 25.9 73 0.0016 22.5 2.5 27 41-68 60-86 (181)
182 PRK11906 transcriptional regul 25.8 2.7E+02 0.0058 22.3 5.9 50 4-53 359-419 (458)
183 PF04910 Tcf25: Transcriptiona 25.6 1.4E+02 0.0031 22.5 4.2 35 7-41 30-69 (360)
184 cd08311 Death_p75NR Death doma 25.1 74 0.0016 19.0 2.2 38 14-51 12-51 (77)
185 PRK13910 DNA glycosylase MutY; 25.1 1.5E+02 0.0032 22.0 4.1 17 4-24 13-29 (289)
186 KOG1128 Uncharacterized conser 24.8 2.1E+02 0.0045 24.5 5.3 67 5-71 541-613 (777)
187 KOG3824 Huntingtin interacting 24.8 1.5E+02 0.0033 23.4 4.3 35 25-59 129-163 (472)
188 cd08315 Death_TRAILR_DR4_DR5 D 24.7 1.8E+02 0.0039 17.9 4.3 21 2-24 6-26 (96)
189 PF12569 NARP1: NMDA receptor- 24.0 2.4E+02 0.0053 22.5 5.4 43 3-45 58-110 (517)
190 PF04212 MIT: MIT (microtubule 24.0 83 0.0018 17.6 2.2 18 25-42 18-35 (69)
191 KOG3785 Uncharacterized conser 24.0 97 0.0021 24.9 3.1 34 18-51 60-96 (557)
192 PF12854 PPR_1: PPR repeat 23.9 73 0.0016 15.6 1.7 13 25-37 20-32 (34)
193 cd02679 MIT_spastin MIT: domai 23.6 79 0.0017 19.1 2.1 16 25-40 21-36 (79)
194 PF12741 SusD-like: Susd and R 22.8 1E+02 0.0022 24.3 3.1 23 18-40 221-255 (529)
195 PF11326 DUF3128: Protein of u 22.7 96 0.0021 18.5 2.4 40 11-50 31-82 (84)
196 PRK14720 transcript cleavage f 22.6 1.7E+02 0.0037 25.4 4.5 51 4-54 137-197 (906)
197 PRK15180 Vi polysaccharide bio 22.0 1.2E+02 0.0027 25.3 3.4 55 17-71 627-693 (831)
198 COG2097 RPL31A Ribosomal prote 21.8 56 0.0012 20.6 1.2 20 27-46 50-69 (89)
199 COG1722 XseB Exonuclease VII s 21.8 88 0.0019 19.1 2.1 17 27-43 32-48 (81)
200 smart00745 MIT Microtubule Int 20.6 1E+02 0.0022 17.5 2.1 17 25-41 21-37 (77)
201 KOG2376 Signal recognition par 20.1 3E+02 0.0065 23.1 5.3 43 25-67 471-513 (652)
No 1
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.91 E-value=1.8e-24 Score=169.33 Aligned_cols=70 Identities=33% Similarity=0.676 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQE 71 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~~ 71 (73)
+|.+|+.||.+||+|+|||+||| +|+.+.|.+||||||+++|+|+|||++||+|.+.+ ||+.+|++||+-
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 79999999999999999999999 99999999999999999999999999999999999 999999999974
No 2
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.23 E-value=2.3e-11 Score=87.22 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
+|.+|.+.+..-+.+++.|.++| .++.+.|.+|||+|++.+|.+.++|..|++|++.. |.+.+|.||||.
T Consensus 20 aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 20 ARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 58999999977788999999999 35566699999999999999999999999999998 999999999984
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1e-09 Score=86.72 Aligned_cols=68 Identities=15% Similarity=0.292 Sum_probs=62.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH---------HHHHHHHHHhhc--Ccchhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD---------VWFHYCNLASEV--PPDGHRK 66 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd---------LW~~Yl~f~~~~--~~~~~~~ 66 (73)
+-.|+..++..|+.|+-|.+|. .|+.++..+|||||+.++|+..+ ||++|+-|.... |+++.|.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4579999999999999999999 78999999999999999999666 999999998877 9999999
Q ss_pred hhhh
Q 041861 67 SEYQ 70 (73)
Q Consensus 67 lf~~ 70 (73)
++..
T Consensus 388 vyq~ 391 (677)
T KOG1915|consen 388 VYQA 391 (677)
T ss_pred HHHH
Confidence 9854
No 4
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=98.88 E-value=4e-09 Score=51.75 Aligned_cols=32 Identities=16% Similarity=0.540 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 26 ALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 26 ~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
|+.+.|.++|+||+..+|.+.++|+.|+.|.+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 57899999999999999999999999999976
No 5
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.74 E-value=3.4e-08 Score=70.86 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH---HHHHHHHHHHhhc-Ccchhhhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS---DVWFHYCNLASEV-PPDGHRKSEYQEE 72 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv---dLW~~Yl~f~~~~-~~~~~~~lf~~~~ 72 (73)
++++||.-|..||.-.+||..|+ +++.+.|+.+||||+..+|..- .||..|++|.... |.+.++.|..|..
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68899999999999999999999 8999999999999999988744 5999999999998 9999999887753
No 6
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=3.9e-08 Score=78.30 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhcC
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEVP 60 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~~ 60 (73)
+|..||+++..||.--.+|+.|+ -.+.++++++|.||+..+ +++|||.-||.++.+++
T Consensus 38 ~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~ 100 (656)
T KOG1914|consen 38 VRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETK 100 (656)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHc
Confidence 68999999999999999999999 689999999999999997 67999999999999993
No 7
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1.6e-06 Score=68.98 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=61.0
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
|+-|+.-+.+.-+.-+-|.||| .+++.+|+.|||||+..=..++-||+.|+.+.+.+ .++.+|.|+.|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 6789999999999999999999 88999999999999997666888999999999888 88888888765
No 8
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.19 E-value=3e-06 Score=67.18 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhcCcch
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEVPPDG 63 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~~~~~ 63 (73)
+|++|++|+.-||+.-.-|..|. -++...++.+|.||+... +++|||.-||.+++..+++.
T Consensus 61 ~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~ 126 (660)
T COG5107 61 EREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLI 126 (660)
T ss_pred HHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCccc
Confidence 68999999999999999999999 478999999999999985 78999999999999985543
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=1.9e-05 Score=64.37 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-------------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-------------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKS 67 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-------------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~l 67 (73)
++..|+++|+.||--|..|..|. ..-.+.....||||+.-.--..-+|.+||+|++.. +.-.+|..
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence 46789999999999999999999 23467788899999995555557999999999988 88888887
Q ss_pred hhh
Q 041861 68 EYQ 70 (73)
Q Consensus 68 f~~ 70 (73)
|.+
T Consensus 125 fdr 127 (835)
T KOG2047|consen 125 FDR 127 (835)
T ss_pred HHH
Confidence 765
No 10
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.60 E-value=0.00038 Score=50.98 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=59.7
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc----Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV----PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~----~~~~~~~lf~~ 70 (73)
.+|++-|+..|-...-|..|. ..+.++..+-+++++...|.|..||..||+|.... ..+.++.+|.+
T Consensus 52 silerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 52 SILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 368899999999999999998 66888899999999999999999999999999986 77888887765
No 11
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00046 Score=36.75 Aligned_cols=34 Identities=6% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHH
Q 041861 20 WRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYC 53 (73)
Q Consensus 20 Wkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl 53 (73)
|..+| .|+.++|+++|+++|+..|.+.+.|..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 55556 89999999999999999999999998764
No 12
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.19 E-value=0.00059 Score=35.77 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 27 LLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 27 ~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
..|+|+.||||.|.--| ++..|+.|+.|..
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 46899999999999765 6999999999864
No 13
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.0011 Score=36.88 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=24.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccC
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~ 44 (73)
...|++++..+|-....|..++ .|+.++|++.|++++..-|.
T Consensus 17 ~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 17 IAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455666666666666666665 56666666666666665554
No 14
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.10 E-value=0.0017 Score=53.55 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..++-|..||-|...|--.- .++++.|++.|-.|++.+|+|+-||+.-....... ++-+.|.+++|
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44888999999999999887 89999999999999999999999999877666655 88888888776
No 15
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.95 E-value=0.0023 Score=55.92 Aligned_cols=68 Identities=10% Similarity=0.261 Sum_probs=59.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc-----HHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS-----SDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S-----vdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.-+++++.--|--.=-|.+|. ++.+++|++|.|||+.++-+- +.+|+.|++..... +.+...++|||-
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 357889999999999999999 899999999999999988442 33999999999988 788999999984
No 16
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.91 E-value=0.0067 Score=44.45 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=56.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----h---c---------chHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----C---A---------LLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHR 65 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~---~---------~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~ 65 (73)
..+++-+...|---+-|.+|+ + + -.+.-..|||||+++-|.|..||..|+.-.... +++.+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 468899999999999999999 1 1 146677899999999999999999999999887 777777
Q ss_pred hhhhh
Q 041861 66 KSEYQ 70 (73)
Q Consensus 66 ~lf~~ 70 (73)
+-+++
T Consensus 86 ~~we~ 90 (321)
T PF08424_consen 86 KKWEE 90 (321)
T ss_pred HHHHH
Confidence 66654
No 17
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0028 Score=35.27 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=24.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
..|++.+..+|-.-..+..+| .|+.++|++++++.+..-|.+.+
T Consensus 12 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 12 ELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 345555666666666665555 55566666666666665555433
No 18
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.87 E-value=0.0031 Score=51.92 Aligned_cols=55 Identities=9% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHccchHHHHHHHH---hcc-hHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 5 VYNSFLADFHLCYGYWRKAC---CAL-LTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya---~~~-~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
-|+.-+.|.|+.-..|++|. .+. ..+...+||||+..+|-|-.||.+||......
T Consensus 15 pfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~ 73 (835)
T KOG2047|consen 15 PFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQ 73 (835)
T ss_pred chHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 48888999999999999999 443 55666799999999999999999999766554
No 19
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.80 E-value=0.0045 Score=54.17 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----h------------------------------------cchHHHHHHHHHHHhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----C------------------------------------ALLTRVVEVFEQSMQS 41 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~------------------------------------~~~~~a~~V~erav~~ 41 (73)
-+.|+..+.+|----.-|.+|+ . |+.++.+.+||--|.+
T Consensus 1550 ~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1550 DELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 3567788888887777899988 2 4455555555555555
Q ss_pred ccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 42 ATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 42 ~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
-|--.|||.-|+.-.+.. +++.+|.||+|-
T Consensus 1630 yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1630 YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555667999999999888 999999999984
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.78 E-value=0.0067 Score=50.24 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 8 SFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 8 ~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
+.+..=|-..++|--|| .|+...|+.++.+|+++.|+|-|+|..=......+ ..|+.|.+|.|.
T Consensus 575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33344455555555555 46666666666666666666666666544444444 666666666553
No 21
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.0054 Score=49.05 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
+.++|.+.|..-|..-+-|.--| ..|+++|+.++.||++--|.|-.||..|..+..
T Consensus 124 v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 124 VKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred HHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 35677777777777777777666 345777777777777777777777777766554
No 22
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.65 E-value=0.021 Score=30.38 Aligned_cols=68 Identities=6% Similarity=-0.013 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...+++.+...|-....|...+ .++.++|.+.+++++...|...+.|.......... +.+.....+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 20 LEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3467778888887777777777 68899999999999998888888888777666555 66666666554
No 23
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.64 E-value=0.0099 Score=47.60 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
..|.+-+.+||---..|-.|+ .++..+.-+||.+++.--|.++|||+.=+.+.-+. +.+.+|.||-+
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 468999999999999999998 56699999999999999999999999877777666 78888888754
No 24
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.011 Score=49.32 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH--------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--------Ccchhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC--------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--------PPDGHRK 66 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya--------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--------~~~~~~~ 66 (73)
|.+=..+-.-||+|-.-|++|+ .++...+++.|++|+.. -+||-+|..|++|+... +-+-.|.
T Consensus 133 ~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~ 211 (881)
T KOG0128|consen 133 RQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERS 211 (881)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhH
Confidence 4445667788999999999999 46788899999999997 47999999999999876 3345566
Q ss_pred hhhh
Q 041861 67 SEYQ 70 (73)
Q Consensus 67 lf~~ 70 (73)
+|+|
T Consensus 212 vf~r 215 (881)
T KOG0128|consen 212 VFER 215 (881)
T ss_pred HHHH
Confidence 7765
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.48 E-value=0.014 Score=32.38 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=41.5
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|++.|++++...|.+.+++..+....... +.++.+.++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999888 888888877653
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.43 E-value=0.0096 Score=41.55 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=44.9
Q ss_pred HccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 12 DFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 12 ~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|--..+|..+| .|+.++|++.|++|+...|.+.+++..++...+.. +.++.+++.++
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 4566778999988 79999999999999999999999999999888876 66665555544
No 27
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.40 E-value=0.0057 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHccchHHHHHHHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC 24 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya 24 (73)
+|.+|++.+..+|..-..|.+|+
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHH
Confidence 68999999999999999999997
No 28
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.36 E-value=0.022 Score=45.94 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHhhccC---cHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQSATY---SSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~~~p~---SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
-++|++=+.-+|+--.-|..|. .|+.+.....||||+..+.. |..||-.|+.|.-.. +...+-.+++|.
T Consensus 99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRi 177 (577)
T KOG1258|consen 99 VKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERI 177 (577)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5789999999999999999999 67788899999999998765 788999999999665 777777777764
No 29
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.35 E-value=0.0092 Score=33.05 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=41.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|+++|++++...|.+.+.|..+....... +.++....+++.
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999999999988888777 888888887764
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.30 E-value=0.055 Score=34.37 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+++.+...|.....|...+ .|+.++|++.|++++..-|...+.|.++....... +.++....+++
T Consensus 52 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 52 ENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124 (234)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 456677777777777777666 67788888888888887777777777776666555 66666555554
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.19 E-value=0.06 Score=33.10 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..++..+...|--...|...+ .++.++|.+++++++..-|.+.+.|.......... +.+.....+.
T Consensus 38 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 38 KLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467888888999889998888 78899999999999999899999887766555544 6666655554
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.17 E-value=0.057 Score=36.99 Aligned_cols=67 Identities=6% Similarity=0.019 Sum_probs=56.5
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHH-hhc-C--cchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLA-SEV-P--PDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~-~~~-~--~~~~~~lf~~ 70 (73)
..+++-|..-|-....|...+ .|+.+.|++.|+++++--|...++|.+|...+ ... + .++.+.++.+
T Consensus 60 ~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 60 QALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 467888999999999999988 89999999999999999999999999999854 333 2 4667766654
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.12 E-value=0.049 Score=35.30 Aligned_cols=67 Identities=4% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|+..+..-|....+|...+ .|..++|+..|++++.--|...+.|.+-....... +.++....+.+
T Consensus 45 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 45 IDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 568888899999999999988 78999999999999998899899888776655555 66666665544
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.02 E-value=0.055 Score=41.00 Aligned_cols=69 Identities=9% Similarity=-0.059 Sum_probs=56.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
...|++.+..-|-....|..++ .|+.++|.+.|+++++.-|...+++.++....... ++++.+.++++.
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777777788888887777 78899999999999998888888888888888877 888888887764
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.92 E-value=0.025 Score=39.48 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=41.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
+...+.....-|-.-.+|..++ +|+.++|.+.|++++..-|.......+|...+... ..++...++.+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455566666677777787777 78899999999999988888888888888888877 77777776655
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.91 E-value=0.037 Score=30.96 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS 45 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S 45 (73)
.++++.+...|-...-|..++ .|+.++|.+.+++++..-|.+
T Consensus 16 ~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 16 EVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 445555555555555555555 555555555555555555543
No 37
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.76 E-value=0.028 Score=31.49 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=39.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.++.++|.+++++++.--|.++.+|..+....... +.+.....+++
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 67899999999999999999999999998888877 77777666655
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.57 E-value=0.16 Score=32.19 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=23.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
..+++.+...|-....|...+ .|+.++|.+.+++++...|.+.+.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344455555555444444444 45555555555555555444444443
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.53 E-value=0.095 Score=40.78 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=50.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.|...|-....|...+ +|+.++|+..|++++...|.+.+.|..+....... +.++....|.+
T Consensus 419 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 419 GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3567788888888777777777 68888888888888888888888888776666555 55655555443
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=95.28 E-value=0.13 Score=39.89 Aligned_cols=67 Identities=9% Similarity=-0.183 Sum_probs=41.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+++.++.-|-....|...+ .|+.++|++.|+++++--|.+.+.|..+....... ++++....+++
T Consensus 325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345666666676666666655 56677777777777776677777666555444444 55555554443
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.22 E-value=0.17 Score=38.43 Aligned_cols=67 Identities=6% Similarity=-0.001 Sum_probs=37.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|.++|++++...|.+.+.|.......... +.++...++++
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555555555555555 56666666666666666666666666555555444 44444444433
No 42
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.03 E-value=0.082 Score=42.98 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 7 NSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 7 ~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
++-++..|+--.-|--.. ..-+++++++||+-+..+|.|---|..|+.-.... |=+.++.||.|-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445678899999998877 55799999999999999999999999999988877 999999999873
No 43
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.01 E-value=0.025 Score=43.67 Aligned_cols=56 Identities=16% Similarity=0.436 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
+.++|.+.|.+-|+..+-|.--+ .+|++.++.+|.+|++--|-|.-+|..|..+..
T Consensus 126 ~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 126 MKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred HHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHH
Confidence 46788889999999999997534 789999999999999987888889999876654
No 44
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.97 E-value=0.039 Score=46.25 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=49.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
-..+++.+.+.|+-..-|++|. ++-.+.+..++-|++++.|.+.|||..|+-.+.++
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~ 394 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERN 394 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhc
Confidence 3568899999999999999998 67788889999999999999999999999666655
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.54 E-value=0.27 Score=38.32 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=41.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.|...|-+...|...+ .|+.++|++.|++++..-|...++|.+........ +.++....|+
T Consensus 352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666777777777777666 56777777777777776677777776655544433 4444444443
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.53 E-value=0.17 Score=27.98 Aligned_cols=53 Identities=8% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 18 GYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
..|...+ .++.++|++.|++|+.--|.+.++|.+........ ++++..+-+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3566777 79999999999999999999999998876655544 25555555443
No 47
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.46 E-value=0.024 Score=43.81 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 10 LADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 10 L~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
-.+||---..|-.|+ .+.....-.||..|++.-|+.+|||+.=|.|.-.. |.+..|.+|.+
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 357888889999999 67788888999999999999999999878887666 88888888764
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.21 E-value=0.27 Score=25.87 Aligned_cols=46 Identities=7% Similarity=0.137 Sum_probs=37.5
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++++++++...|.+.+.|.......... +.+...+.+++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999898888888777776665 77777776654
No 49
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.06 E-value=0.54 Score=33.96 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=50.1
Q ss_pred HHHHHHHHHHccch-----HHHHHHHH---hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLC-----YGYWRKAC---CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~-----~~YWkkya---~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++|+.+||-. ..||.=.+ .|+.++|...|++.+...|.| .|.|..=....... +.+..+..+++
T Consensus 163 i~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 163 IVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45799999999975 67888777 899999999999999988875 55554322222222 77777777654
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.99 E-value=0.53 Score=33.69 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=28.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
..|++.++..|-....|...+ .|+.++|++.|+++++--|.....|.+-
T Consensus 85 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 85 NDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345556666666666665555 5566666666666666555555555543
No 51
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.95 E-value=0.53 Score=34.93 Aligned_cols=68 Identities=4% Similarity=-0.036 Sum_probs=46.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.|...|-....|...| +|+.++|+..+++++.--|.+...|.......... +.+.....+++
T Consensus 22 i~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 22 VDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567788888888888887777 67888888888888887777777766554443333 55555554443
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.74 E-value=0.5 Score=38.18 Aligned_cols=62 Identities=5% Similarity=-0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHR 65 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~ 65 (73)
...+++++..+|-... |...+ .|..++|+..+++++..-|.+.+++..+....... .++...
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 4567888888888888 87777 68888888888888888888888888887766554 444333
No 53
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.45 E-value=0.16 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=19.7
Q ss_pred hcchHHHHHHHHHHHhhccCc
Q 041861 25 CALLTRVVEVFEQSMQSATYS 45 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S 45 (73)
.|+.++|+++|++.+...|.|
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTTS
T ss_pred ccCHHHHHHHHHHHHHHCcCC
Confidence 789999999999999999976
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.24 E-value=0.69 Score=36.91 Aligned_cols=67 Identities=9% Similarity=-0.068 Sum_probs=41.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-...-|-.++ .|+.++|+..+++++..-|.+.+.+..+....... +.++....++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456666666776666666666 56677777777777766666666666655555444 5555444443
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.19 E-value=0.63 Score=37.64 Aligned_cols=67 Identities=3% Similarity=-0.178 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...+++.+...|-..+.|...| .|..++|++++++++..-|.+.+++.......... +.++...+..
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4678899999999999999999 68999999999999999999999998877766554 5555555443
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.11 E-value=0.77 Score=36.66 Aligned_cols=67 Identities=12% Similarity=-0.114 Sum_probs=48.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|..-....... +.++....+.
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 4567888888888888887777 67888888888888887788888887766665555 5555555443
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.90 E-value=0.72 Score=39.11 Aligned_cols=64 Identities=6% Similarity=-0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|++.+...|-....+..++ .|..++|+++|+++++.-|.+.++|.+........ +.+.....+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555555555554 45555555555555555555555555554444443 444444433
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=92.30 E-value=1.7 Score=29.16 Aligned_cols=70 Identities=4% Similarity=-0.040 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccchHHHHHHH-----------------H-----hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHh
Q 041861 3 RLVYNSFLADFHLCYGYWRKA-----------------C-----CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLAS 57 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkky-----------------a-----~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~ 57 (73)
...|++++..+|-.-..|.-+ | .|+.++|+..|++++...|.+ .+.|..-.....
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL 214 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 567899999999987766333 1 489999999999999997764 578887777776
Q ss_pred hc-Ccchhhhhhhhhh
Q 041861 58 EV-PPDGHRKSEYQEE 72 (73)
Q Consensus 58 ~~-~~~~~~~lf~~~~ 72 (73)
.. +.++....+++.+
T Consensus 215 ~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 215 KLGLKDLAQDAAAVLG 230 (235)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 66 7777777766543
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.15 E-value=0.98 Score=36.96 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=37.3
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
+|..++|+++|+|++...|-.-+.|++|..-++.. +.++....|++
T Consensus 167 ~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 167 IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57888888888888887777788888888888877 77777777665
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.08 E-value=1.3 Score=25.63 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccc--hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHL--CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl--~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
-..|+++++.-|. -..+|...| .|+.++|++++++ ...-|.+++...-+..-.... +-++..+.+++
T Consensus 9 i~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 9 IKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3578999999995 567888777 8999999999999 554454444444333322222 66666666654
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.84 E-value=1.6 Score=25.49 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++++..+|-. ..-+...+ .|+.+.|.+.|++++...|.+ .+.|.......... +.+.....+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 22 IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45688888888743 23344444 788999999999999877764 45566555554444 66666665554
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.83 E-value=0.55 Score=33.90 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccc---hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH
Q 041861 3 RLVYNSFLADFHL---CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS 46 (73)
Q Consensus 3 r~~Y~~fL~~fPl---~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv 46 (73)
...|++++.+||- -.+-|.+.+ +|+.++|+++|++.+...|.|-
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4679999999997 677787776 8999999999999999999864
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=91.81 E-value=1.4 Score=34.30 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDV 48 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdL 48 (73)
...|++.|...|-....|..++ .|..++|++.++++++--|.....
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 4578889999999988888777 788999999999999988876553
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.70 E-value=1.6 Score=31.13 Aligned_cols=46 Identities=7% Similarity=-0.038 Sum_probs=26.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.++.++|++.|++++...|.+.+.|.......... ++++...++++
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46666677777776666666666665554444433 55555555443
No 65
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.44 E-value=1.4 Score=37.42 Aligned_cols=67 Identities=6% Similarity=-0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|- ...|...+ .|..++|++.|++++..-|.+.+.+.++....... +.++....+++
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567888888886 77888777 78899999999999999899999998888777766 66666665554
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.83 E-value=1.2 Score=28.80 Aligned_cols=50 Identities=8% Similarity=-0.194 Sum_probs=44.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
...|++.+..-|-....|...+ +|..++|++.|++++..-|...+-|.+-
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3578899999999999999988 8999999999999999999988888653
No 67
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.74 E-value=0.43 Score=24.18 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHhhccCcHHHHHHHHHHHhhc-Ccchh
Q 041861 35 FEQSMQSATYSSDVWFHYCNLASEV-PPDGH 64 (73)
Q Consensus 35 ~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~ 64 (73)
|+|||+--|.+.+.|.++..+.... +.++.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 6777887788888888877776655 54443
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.60 E-value=1.2 Score=26.07 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=36.2
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCcH
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYSS 46 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv 46 (73)
...|++++..+|-- ...|...+ .++.++|.+.+++++...|.|.
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 59 AKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 46788999988873 45676666 7999999999999999999864
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.58 E-value=1.9 Score=36.50 Aligned_cols=65 Identities=8% Similarity=-0.100 Sum_probs=49.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKS 67 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~l 67 (73)
...|++.|...|-.-..+...+ .|+.++|++++++++..-|.+.+.+..+..+.... ++++....
T Consensus 481 ~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 481 AELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4578899999998776666666 78999999999999998899999888777665544 44444433
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.52 E-value=1.7 Score=32.00 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.++..|+-|+.=|--++-|---| .|..+.|.+-|++|+.--|.+=|+=.||=.|++.. .|++.-.-|++
T Consensus 54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 45678899999999999999888 89999999999999999999999999999999988 77777666654
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.42 E-value=0.95 Score=21.53 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHH-----hcchHHHHHHHHHHHhhccC
Q 041861 19 YWRKAC-----CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 19 YWkkya-----~~~~~~a~~V~erav~~~p~ 44 (73)
.|...+ .|+.++|++.|++|+.--|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 455555 89999999999999997774
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=89.14 E-value=2.6 Score=25.63 Aligned_cols=66 Identities=8% Similarity=0.021 Sum_probs=46.3
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|++.++.-|--..-=..++ .++.++|.+.+++++..-|.+.+.|..-....... +.++....+.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666664422111222 78999999999999998899999998887777655 66666655544
No 73
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.85 E-value=4 Score=29.05 Aligned_cols=67 Identities=10% Similarity=-0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH-HHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS-DVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv-dLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.++..|-....|...+ .|+.++|++.+++++..-|... +.|..-....... +.++....++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457777777777766666665 6778888888888777555432 3333322222222 5555544443
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.78 E-value=4.3 Score=27.75 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
.+.|+-+...=|..+.||..++ +|+.++|++.|++|+.-=|..-.
T Consensus 55 ~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 55 ARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 4567777778899999999999 89999999999999986565433
No 75
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=88.65 E-value=2.1 Score=30.31 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=41.3
Q ss_pred HHHHHHHHHHccch-----HHHHHHHH---hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 3 RLVYNSFLADFHLC-----YGYWRKAC---CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 3 r~~Y~~fL~~fPl~-----~~YWkkya---~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
...|++++.+||.- ..+|.-++ .++.+.|+..|++.++..|.+-+. +|+.|++
T Consensus 52 i~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--~~a~Y~~ 112 (243)
T PRK10866 52 ITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYVLYMR 112 (243)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--HHHHHHH
Confidence 56799999999943 23566666 899999999999999999998774 5555554
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.47 E-value=2.4 Score=23.14 Aligned_cols=41 Identities=7% Similarity=-0.038 Sum_probs=35.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hc-chHHHHHHHHHHHhhcc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CA-LLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~-~~~~a~~V~erav~~~p 43 (73)
...|++-+..-|-....|-..+ .| +.++|++-+++|++--|
T Consensus 23 ~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 23 IEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3578999999999999999999 67 79999999999998544
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.45 E-value=5 Score=27.35 Aligned_cols=68 Identities=7% Similarity=-0.073 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH------hcc--hHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC------CAL--LTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya------~~~--~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+|++.+...|--...|-.+| .|+ .++|.++++++++.-|..++.+..-....... +.++....+++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999988 244 59999999999999999888876655444444 55555554443
No 78
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=88.32 E-value=3.1 Score=35.24 Aligned_cols=66 Identities=8% Similarity=-0.125 Sum_probs=34.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-...-|...+ .|+.++|+++|++++..-|.+.+.+.......... +.++...+++
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445555666665555555555 45566666666655555555555555444433322 4444444443
No 79
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.17 E-value=1.2 Score=36.12 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
|.-+|+..+.-||+|..-|.+|. .++-++|..+-+||+.--| .|=..|..+-..+ |.+.|+.-|++
T Consensus 287 i~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp---sL~~~lse~yel~nd~e~v~~~fdk 358 (660)
T COG5107 287 IHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP---SLTMFLSEYYELVNDEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC---chheeHHHHHhhcccHHHHhhhHHH
Confidence 34578888888899999998888 6677778877777766544 3555555555555 66666665543
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.34 E-value=4.6 Score=33.15 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...+++.++..|-..+.+..+| .+.+|+|...+++++..-|.|-+-=......+... .-++...+|++
T Consensus 106 ~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 106 LAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3456777777777777777777 56777777777777777777777666555555555 66666666655
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=86.40 E-value=5.3 Score=29.61 Aligned_cols=56 Identities=9% Similarity=-0.089 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH--HHHHHHHHHhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD--VWFHYCNLASE 58 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd--LW~~Yl~f~~~ 58 (73)
...+++.|...|-....|...+ +|+.+.|+..|++|+.--|...+ .|...|.-.+.
T Consensus 56 l~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 56 VADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3568899999999999999888 89999999999999998887555 78888866653
No 82
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.37 E-value=1.1 Score=22.66 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=24.9
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHH
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVE 33 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~ 33 (73)
|++-++..|-....|..++ .|+.++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999999999999999 788888763
No 83
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.35 E-value=1.4 Score=22.10 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=12.9
Q ss_pred hcchHHHHHHHHHHH
Q 041861 25 CALLTRVVEVFEQSM 39 (73)
Q Consensus 25 ~~~~~~a~~V~erav 39 (73)
.|+.++|++.|++++
T Consensus 12 ~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 12 QGDYEKAIEYYEQAL 26 (36)
T ss_dssp CT-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 799999999999966
No 84
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.26 E-value=2 Score=18.25 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=19.6
Q ss_pred HHHHHH-----hcchHHHHHHHHHHHhhcc
Q 041861 19 YWRKAC-----CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 19 YWkkya-----~~~~~~a~~V~erav~~~p 43 (73)
.|...+ .++.+.|+..|++++..-|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555 7899999999999998655
No 85
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=85.18 E-value=1.3 Score=30.52 Aligned_cols=45 Identities=13% Similarity=0.446 Sum_probs=38.7
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 14 HLCYGYWRKACCALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 14 Pl~~~YWkkya~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
--||.||++=+-.+.....+-|..|+.-+ +|+.|-.+|.+|.+-.
T Consensus 47 trcFkYW~~~~p~~~~~ilEEY~dglHF~-lsigl~~~~~d~~ip~ 91 (161)
T COG4508 47 TRCFKYWKLSKPIDLAKILEEYSDGLHFL-LSIGLYYQLSDFLIPF 91 (161)
T ss_pred hhHHHhhhhcCCCcHHHHHHHHhhhHHHH-HHhHHHHHhhhhhccc
Confidence 45999999988888889999999999854 7999999999988755
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.49 E-value=7.7 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHccch----HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 5 VYNSFLADFHLC----YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 5 ~Y~~fL~~fPl~----~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.+.+.|.+-|+- ..+|...+ .|..+.|+..|++++..-|...+.|.+-....... +.+.....|.+
T Consensus 48 ~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 48 RLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456677766643 45677766 79999999999999999999999998877665555 66666665554
No 87
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.16 E-value=8.8 Score=24.66 Aligned_cols=67 Identities=7% Similarity=0.013 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHccch---------HHHHHHHH-hcchHHHHHHHHHHHhh-cc-CcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 2 IRLVYNSFLADFHLC---------YGYWRKAC-CALLTRVVEVFEQSMQS-AT-YSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~---------~~YWkkya-~~~~~~a~~V~erav~~-~p-~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
+..++++.+..|+-. -..|.+|| ..+ .+.+||+....+ +. .+-.+|..|+.+.... +-+++.+|+
T Consensus 45 L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 45 LLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345677777777554 45699999 333 777777766652 33 3567899999988887 888888877
Q ss_pred hh
Q 041861 69 YQ 70 (73)
Q Consensus 69 ~~ 70 (73)
.+
T Consensus 123 ~~ 124 (126)
T PF08311_consen 123 QL 124 (126)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 88
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=83.79 E-value=3.2 Score=26.09 Aligned_cols=47 Identities=2% Similarity=0.032 Sum_probs=35.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|+..+++++..=|++-++|...+...... ++..+.+.|.+.
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 57788888888888888888888888888877777 777777777664
No 89
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=82.99 E-value=9 Score=29.51 Aligned_cols=64 Identities=2% Similarity=-0.128 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...++++.++.|-. +...| .+.-.+|+++..+++...|.+.+|..-...|+... +.+.+..+-.
T Consensus 189 i~lle~L~~~~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 189 IELLEKLRERDPEV---AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred HHHHHHHHhcCCcH---HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46788888888853 33444 57788899999999999999999999999999887 5665555443
No 90
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=82.42 E-value=5.6 Score=24.94 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=33.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~ 42 (73)
....++.+...|+...-|.... .|+...|.++|++....+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3567889999999999999988 899999999999987753
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=82.09 E-value=9.4 Score=26.88 Aligned_cols=67 Identities=10% Similarity=-0.096 Sum_probs=40.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH----HHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS----DVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv----dLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+++.+..-|-....+--++ .|..++|++.+++++...|.+. ..|.+........ +.++...++++
T Consensus 135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456666666666655555555 5777777777777777655322 2455555555444 66666666554
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.65 E-value=5.1 Score=26.99 Aligned_cols=54 Identities=2% Similarity=-0.015 Sum_probs=41.7
Q ss_pred HHHHHHHHHHccch-----HHHHHHHH---hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 3 RLVYNSFLADFHLC-----YGYWRKAC---CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 3 r~~Y~~fL~~fPl~-----~~YWkkya---~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
.+.++.+..+||.- ...|.-|| .++.+.|+..++|=++--|.+-+ ++|+.+++.
T Consensus 30 ~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~--vdYa~Y~~g 91 (142)
T PF13512_consen 30 IKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN--VDYAYYMRG 91 (142)
T ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC--ccHHHHHHH
Confidence 56788999999973 45677777 78999999999999998888877 455544443
No 93
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.56 E-value=2.3 Score=27.39 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=18.2
Q ss_pred ccchHHHHHHHH--hcchHHHHHHHHHHH
Q 041861 13 FHLCYGYWRKAC--CALLTRVVEVFEQSM 39 (73)
Q Consensus 13 fPl~~~YWkkya--~~~~~~a~~V~erav 39 (73)
.+++|.-|-.+. .|+.++|.+||++||
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 344444444433 899999999999996
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=80.75 E-value=13 Score=27.61 Aligned_cols=67 Identities=4% Similarity=-0.065 Sum_probs=43.8
Q ss_pred HHHHHHHHHHccchH--HHHHHHH-----hcchHHHHHHHH--HHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCY--GYWRKAC-----CALLTRVVEVFE--QSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~--~YWkkya-----~~~~~~a~~V~e--rav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.+..++.|+..|-.. .+---++ .|+.++|.+.|| +++..-|.+.+ ..++....... ++++.++++.+
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566777777666 4433333 788888888888 56666665555 44666666666 77777777654
No 95
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.42 E-value=4.4 Score=19.22 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=16.8
Q ss_pred hcchHHHHHHHHHHHhhcc
Q 041861 25 CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p 43 (73)
+|+.++|.+.|++|++--|
T Consensus 14 ~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 14 LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp TTSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 8999999999999998544
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=80.35 E-value=6.7 Score=26.23 Aligned_cols=45 Identities=2% Similarity=0.009 Sum_probs=36.4
Q ss_pred HHHHHHHHHHccchH---HHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHLCY---GYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~---~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
...|++++..+|-.. .-|...+ .++.++|++.|+++++..|.+.+
T Consensus 53 ~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 53 IKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 457889999999654 3455555 79999999999999999997776
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=79.31 E-value=16 Score=29.27 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
++..+.++...|-.--||---. .|..++|.+-+++++...|++--||.+|.+.+... +|.+...
T Consensus 326 ~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 326 LKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 4566778888887666665444 67889999999999999999988999999988877 5554433
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=79.02 E-value=8.2 Score=28.10 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
-+|+++-.+||---.----.| +|+.++|+++++.|+..-|...|...+-+...... +++.+++..++
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 367787777754222111122 79999999999999999999999988865554444 44667766655
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=76.70 E-value=20 Score=26.67 Aligned_cols=69 Identities=4% Similarity=-0.285 Sum_probs=50.2
Q ss_pred HHHHHHHHHccchH-HHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhhh
Q 041861 4 LVYNSFLADFHLCY-GYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQEE 72 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~-~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~~ 72 (73)
..+++.+..+|-.. ..-..+| .|+.+.|.+.+++.++.-|.+.+...-........ |.+.+.+++.+..
T Consensus 139 ~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 139 QHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566667788764 3443345 68899999999999998899888877777776666 7777777766543
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=76.45 E-value=9.5 Score=21.25 Aligned_cols=27 Identities=4% Similarity=0.133 Sum_probs=19.4
Q ss_pred cchHHHHHHHH-----hcchHHHHHHHHHHHh
Q 041861 14 HLCYGYWRKAC-----CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 14 Pl~~~YWkkya-----~~~~~~a~~V~erav~ 40 (73)
|.........+ .|..++|++.|++|+.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555 8999999999999996
No 101
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=75.72 E-value=17 Score=24.55 Aligned_cols=45 Identities=4% Similarity=0.053 Sum_probs=32.4
Q ss_pred HHHHHHHHHHccch-----HHHHHHHH---hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHLC-----YGYWRKAC---CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl~-----~~YWkkya---~~~~~~a~~V~erav~~~p~Svd 47 (73)
...|+++..+||.- ..+|.-++ .++.+.|+..|++-+...|.|-.
T Consensus 25 i~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 25 IKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 46789999999962 34555555 89999999999999999998765
No 102
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=74.81 E-value=19 Score=23.06 Aligned_cols=43 Identities=2% Similarity=-0.001 Sum_probs=29.6
Q ss_pred HHHHHHHH-----hcchHHHHHHHHHHHhhccC---cHHHHHHHHHHHhhc
Q 041861 17 YGYWRKAC-----CALLTRVVEVFEQSMQSATY---SSDVWFHYCNLASEV 59 (73)
Q Consensus 17 ~~YWkkya-----~~~~~~a~~V~erav~~~p~---SvdLW~~Yl~f~~~~ 59 (73)
.+-+..++ +|..++|..++++++..+|. +-.++..|..-+...
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 44455566 78888888888888888777 666776666544443
No 103
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=74.67 E-value=5.1 Score=30.83 Aligned_cols=45 Identities=9% Similarity=0.266 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccc---hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHL---CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl---~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
+...+.+...-|- +..||.=.| .|+++.++.+||.||.+-..-+|
T Consensus 123 ~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie 175 (353)
T PF15297_consen 123 LATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE 175 (353)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH
Confidence 3455566667776 468999777 67789999999999997655555
No 104
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=74.49 E-value=21 Score=23.17 Aligned_cols=54 Identities=7% Similarity=-0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 4 LVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 4 ~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
..|++.+...|-. ...|...+ .|+.++|++.|++++...|.....+..+.....
T Consensus 56 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 56 ENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456666554432 34666666 789999999999999988888888776654443
No 105
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.41 E-value=6.7 Score=18.67 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=16.3
Q ss_pred hcchHHHHHHHHHHHhhcc
Q 041861 25 CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p 43 (73)
+++.++|++-|++|++--|
T Consensus 14 ~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 14 LGDYEEALEYYQRALELDP 32 (34)
T ss_dssp TT-HHHHHHHHHHHHHHST
T ss_pred hCCchHHHHHHHHHHHHCc
Confidence 7999999999999998655
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=73.30 E-value=15 Score=23.23 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHccch-HHHHHHHH-------hcchHHHHHHHHHHHhhccC
Q 041861 2 IRLVYNSFLADFHLC-YGYWRKAC-------CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~-~~YWkkya-------~~~~~~a~~V~erav~~~p~ 44 (73)
+...++.|...||-- |...-.+. .|++++|.+.|+.++..-|.
T Consensus 30 ~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 30 AEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 355789999999988 77666665 68999999999999997643
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=71.49 E-value=24 Score=22.63 Aligned_cols=46 Identities=2% Similarity=0.013 Sum_probs=36.3
Q ss_pred hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
+|..++|+..|++++..-+.+ .+.++....-.... ++|+...++++
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999963333 55888888777766 88888777764
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=70.20 E-value=20 Score=25.15 Aligned_cols=46 Identities=4% Similarity=-0.138 Sum_probs=33.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|..++|++.+++++..-|.+...+.......... +.++....+.+
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 68899999999999998898877766665554444 66666665543
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=69.80 E-value=24 Score=22.62 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=11.1
Q ss_pred hcchHHHHHHHHHHHhhccC
Q 041861 25 CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~ 44 (73)
.|..++|+..|++|+.-.|.
T Consensus 48 ~g~~~~A~~~~~~al~l~~~ 67 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEID 67 (168)
T ss_pred cCCHHHHHHHHHHHHhcccc
Confidence 45566666666666554443
No 110
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=69.36 E-value=41 Score=25.05 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...++.++++|=......-++ .+..++|++.||+++..-|.+.+ +.-+....... +++.....+.+
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 455677788887777666666 67788888888888887676544 33344444444 66666665543
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.03 E-value=18 Score=25.52 Aligned_cols=46 Identities=4% Similarity=-0.086 Sum_probs=36.0
Q ss_pred hcchHHHHHHHHHHHhhccCcHH-----HHHHHHHHHhhcCcchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSD-----VWFHYCNLASEVPPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~Svd-----LW~~Yl~f~~~~~~~~~~~lf~~~ 71 (73)
.|+.++|++.|++.+...|.|.- +|..|+-|... +.+.....++++
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-~y~~A~~~~e~f 95 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRF 95 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 69999999999999999998643 78888877754 555666666654
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.95 E-value=15 Score=27.70 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHHHHHccchHHHHHHHH--------hcchHHHHHHHHHHHhhcc-CcHHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC--------CALLTRVVEVFEQSMQSAT-YSSDVWFHY 52 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya--------~~~~~~a~~V~erav~~~p-~SvdLW~~Y 52 (73)
.||+.+-.-|+..-|-.+|| ..|.+.|.+.|+|||+.-| ++..|---|
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 46777777788888888877 3467778888888888777 344443333
No 113
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=67.19 E-value=11 Score=20.72 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 33 EVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 33 ~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.-|.+||.+-|-.-..|.-|..++.+. +|++..-|+-
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~raefIr~ 40 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARAEFIRL 40 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHhHHHh
Confidence 357899999999999999999999998 8876665553
No 114
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.56 E-value=21 Score=26.35 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHccc-----hHHHHHH---HHhcchHHHHHHHHHHHhhccCcH
Q 041861 2 IRLVYNSFLADFHL-----CYGYWRK---ACCALLTRVVEVFEQSMQSATYSS 46 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl-----~~~YWkk---ya~~~~~~a~~V~erav~~~p~Sv 46 (73)
....|.+|+.+||- ...||-= |+.|+.++|..+|.++++..|-|-
T Consensus 160 A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 160 AEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 35689999999996 4679964 449999999999999999988754
No 115
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=63.50 E-value=2.5 Score=28.98 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=15.2
Q ss_pred chHHHHHHHHhcchHHHHHHHHH
Q 041861 15 LCYGYWRKACCALLTRVVEVFEQ 37 (73)
Q Consensus 15 l~~~YWkkya~~~~~~a~~V~er 37 (73)
++-||||=| ||.++|.++|++
T Consensus 132 ~~~GyWKVY--~n~~~a~~~F~~ 152 (176)
T PF12672_consen 132 KCCGYWKVY--GNPEEAKKLFER 152 (176)
T ss_pred eEeccCccC--CCHHHHHHHHHH
Confidence 467999987 567777776665
No 116
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=60.91 E-value=39 Score=26.89 Aligned_cols=38 Identities=3% Similarity=-0.048 Sum_probs=26.2
Q ss_pred HHHHHHHHHccchHHH---HHHHH-----hcchHHHHHHHHHHHhh
Q 041861 4 LVYNSFLADFHLCYGY---WRKAC-----CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~Y---Wkkya-----~~~~~~a~~V~erav~~ 41 (73)
..|++-|+..|-.... |-..+ +|+.++|++.+++|+..
T Consensus 96 a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 96 AQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777777776643 55555 67777888888877774
No 117
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=60.87 E-value=31 Score=29.68 Aligned_cols=46 Identities=9% Similarity=0.240 Sum_probs=36.5
Q ss_pred ccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 13 FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 13 fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
-|--.+.|++.+ +|++++|+-.|.|||+.-|...++=..+..-...
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 466779999999 8999999999999999999887755555554443
No 118
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=59 Score=24.35 Aligned_cols=54 Identities=6% Similarity=0.007 Sum_probs=47.7
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
-+.=|.+.|---+=|--.+ +|+.+.|..-|.+|++=-|.+.|+|..|...+.-.
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4566888899999998888 89999999999999999999999999999877654
No 119
>PLN02789 farnesyltranstransferase
Probab=59.90 E-value=36 Score=25.19 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hc-chHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CA-LLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~-~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
..+++.|...|-.+.-|.--. ++ ..+++.+.++++++.-|-+...|.+=
T Consensus 58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 356677788888888886443 44 46788888888888888888888754
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.07 E-value=22 Score=24.00 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=33.5
Q ss_pred hcchHHHHHHHHHHHhhccCcH-----HHHHHHHHHHhhcCcchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSS-----DVWFHYCNLASEVPPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~Sv-----dLW~~Yl~f~~~~~~~~~~~lf~~~ 71 (73)
.|+.++|++.|++.+...|.|- .+|+.++.|... +-+.....++++
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~f 68 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERF 68 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 7899999999999999998854 389988887664 555556655554
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=58.36 E-value=25 Score=30.19 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=44.7
Q ss_pred HHHHHHccc-hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 7 NSFLADFHL-CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 7 ~~fL~~fPl-~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+....|. +.++|.+.| ++..+.|++-|+++|..-|-.+|.=+.=....... ++|++.+.-++
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 344444443 357999999 89999999999999999999999655544433333 66655554443
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=58.12 E-value=26 Score=28.18 Aligned_cols=48 Identities=6% Similarity=-0.102 Sum_probs=42.5
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
+-+++.+..+|...--|..|+ .|+..+|+.++.+++.+.|...+-|--
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 457899999999988889998 788999999999999999988877753
No 123
>PRK04387 hypothetical protein; Provisional
Probab=54.37 E-value=26 Score=22.12 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=34.7
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQEE 72 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~~ 72 (73)
++-.+.+++.||+||.. -+|...|=.|...+ .-.+-++|+..||
T Consensus 20 i~F~~~VE~aYE~gv~r----e~ll~~Y~~FK~VVpsK~EEKql~reFe 64 (90)
T PRK04387 20 LHFFNAVEKAYEKGVDA----EELLDAYRRFKEIVPSKAEEKQIDREFE 64 (90)
T ss_pred HHHHHHHHHHHHcCCcH----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 56678888899998875 67999999999988 5555666777765
No 124
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=53.74 E-value=18 Score=29.35 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHccchHHHHHHHH---hcchHHHHHHHHHHHhhc
Q 041861 7 NSFLADFHLCYGYWRKAC---CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 7 ~~fL~~fPl~~~YWkkya---~~~~~~a~~V~erav~~~ 42 (73)
.+-|+.+|.|...+.=.| ..++.++++.|++|+++-
T Consensus 192 ~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 192 KEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 356899999999999999 778999999999999963
No 125
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.63 E-value=42 Score=22.56 Aligned_cols=46 Identities=4% Similarity=-0.035 Sum_probs=36.4
Q ss_pred hcchHHHHHHHHHHHhhccCc-----HHHHHHHHHHHhhcCcchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYS-----SDVWFHYCNLASEVPPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S-----vdLW~~Yl~f~~~~~~~~~~~lf~~~ 71 (73)
.|+.++|++.||+-....|.| ..||..|+-|... +.+......+||
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-~y~~A~a~~~rF 73 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-DYEEAIAAYDRF 73 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Confidence 689999999999999999985 5699999998775 555555555554
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=52.07 E-value=38 Score=28.51 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=32.9
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|++.+|++.++..+...|-..+|+..+....... .|.+.+...++
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 57777777777777777777777777777766655 66666665543
No 127
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.86 E-value=47 Score=24.59 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=37.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
-|+...|.+-+|+||++=|.+.+-|..-..+-... .++..++-|.+
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 58999999999999999999999998766655554 77766666554
No 128
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=48.21 E-value=20 Score=17.15 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=14.1
Q ss_pred hcchHHHHHHHHHHHhh
Q 041861 25 CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~ 41 (73)
.|..++|++.+++++.-
T Consensus 15 ~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 15 QGRYEEALELLEEALEI 31 (42)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred hhhcchhhHHHHHHHHH
Confidence 78899999999999873
No 129
>PRK14574 hmsH outer membrane protein; Provisional
Probab=47.94 E-value=1.1e+02 Score=25.94 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=39.2
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
..+++++..+|-...| +-.+ .++..+|+++|++++...|...++...|..-+...
T Consensus 157 ~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 157 KQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566667777775554 4434 25565688888888888888888888888777665
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=47.81 E-value=1.1e+02 Score=23.56 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
.++-|...|--+.-..-.| .+..+.|.++.++|+..-|.+.+-|..=...-+.
T Consensus 223 l~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 223 LNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 4566677887766666666 6778999999999999999999999875444443
No 131
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=47.26 E-value=43 Score=23.78 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~ 40 (73)
+|..|..++..++=+..-|..+. -.+.+.+.....||+.
T Consensus 156 LR~lYr~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~fL~rALa 198 (240)
T TIGR02568 156 LRDLYRQAVSDQSSLVQLLSDLIERYGAQRFDIVLDFLIRALA 198 (240)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 79999999999998888888888 3456679999999987
No 132
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=46.87 E-value=6.9 Score=23.16 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=15.6
Q ss_pred HHHHHHHHccchHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRK 22 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkk 22 (73)
+=+.+|++-|+..+||+|
T Consensus 38 ~q~dil~KIP~~G~~~~~ 55 (64)
T PF09796_consen 38 FQRDILQKIPVFGSYWIK 55 (64)
T ss_pred HHHHHHHhCCcccccccc
Confidence 457899999999999976
No 133
>PLN03218 maturation of RBCL 1; Provisional
Probab=45.50 E-value=56 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.013 Sum_probs=33.1
Q ss_pred hcchHHHHHHHHHHHhh-ccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQS-ATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~-~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|.++|++..+. ++.+...|..-+...... +.+++.++|.+.
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67788888888887773 555677777666655555 777777777654
No 134
>PLN02789 farnesyltranstransferase
Probab=44.98 E-value=90 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
+++.|+.-|-.+.-|-.=. +|..+++++-+.++|..=|.+...|.+
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~ 181 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ 181 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence 4455566666666665433 555666666666666655666666654
No 135
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.41 E-value=88 Score=20.40 Aligned_cols=22 Identities=5% Similarity=-0.010 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhc-Ccchhhhhhh
Q 041861 48 VWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 48 LW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
++..|+.++... +-.++.+||.
T Consensus 101 fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555 5555554443
No 136
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=44.34 E-value=38 Score=21.20 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=32.4
Q ss_pred ccchHHHHHHHH----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-CcchhhhhhhhhhC
Q 041861 13 FHLCYGYWRKAC----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQEEK 73 (73)
Q Consensus 13 fPl~~~YWkkya----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~~~ 73 (73)
||+..+ |-.== ++-.+.+++.||.||.. -+|-..|=.|...+ .--+-.+|+..||+
T Consensus 5 YPld~d-WsteEii~Vi~F~~~VE~AYE~gV~r----~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~ 65 (88)
T PF05256_consen 5 YPLDPD-WSTEEIIDVINFFNAVEKAYEKGVDR----EELLDAYRRFKKVVPSKSEEKQLDREFEE 65 (88)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTT-EEH----HHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHccCcH----HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 666665 43211 56678888899988875 67899999999887 44455567766653
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=42.90 E-value=37 Score=27.05 Aligned_cols=41 Identities=5% Similarity=0.201 Sum_probs=31.9
Q ss_pred HHHHHH--H-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 18 GYWRKA--C-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 18 ~YWkky--a-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
--|--| | +|+.++|.+..++||..-|.++||-.-=....+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 457666 3 8999999999999999999999976543444333
No 138
>PRK15331 chaperone protein SicA; Provisional
Probab=42.62 E-value=72 Score=22.01 Aligned_cols=38 Identities=3% Similarity=-0.012 Sum_probs=29.0
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~ 41 (73)
..|.-+..-=|+...||.-+| ++..++|+..|..|..-
T Consensus 58 ~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 58 TFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445545555689999999998 78888888888888763
No 139
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=42.36 E-value=1.4e+02 Score=22.16 Aligned_cols=46 Identities=4% Similarity=0.005 Sum_probs=26.9
Q ss_pred HHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHH
Q 041861 8 SFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCN 54 (73)
Q Consensus 8 ~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~ 54 (73)
++-.+.|-.-.....|| .|+.++|.++.++++.. |.+.++..-|..
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~ 304 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPR 304 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhh
Confidence 33344444555556666 56677777777777763 555666655554
No 140
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.35 E-value=40 Score=20.81 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=23.4
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
.+..++|+.++++++...+.+-|-|.-
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~ 45 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRV 45 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHH
Confidence 467899999999999999999997753
No 141
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.22 E-value=44 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=25.3
Q ss_pred HHHHHHHHHccchHHHH---HHHH-hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYW---RKAC-CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YW---kkya-~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
+.+.+-|.+||+--.|= |-|. +..+++|..|+..++..+|..|-+=+.
T Consensus 244 kqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g 295 (478)
T KOG1129|consen 244 KQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLG 295 (478)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhh
Confidence 34445555555544332 2222 556666666666666666665554443
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=1.6e+02 Score=22.34 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHH
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCN 54 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~ 54 (73)
-.+.|.+||.--.-|-..| .|..++|.--||..|-.-|++--.-..|..
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3566788888888888877 678888888888888877776654444443
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=40.01 E-value=70 Score=25.51 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=30.3
Q ss_pred cchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHH
Q 041861 14 HLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDV 48 (73)
Q Consensus 14 Pl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdL 48 (73)
|-....|...+ +|..++|+..|++|++--|...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA 111 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA 111 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence 66677788887 899999999999999999998764
No 144
>PLN03077 Protein ECB2; Provisional
Probab=39.30 E-value=67 Score=26.18 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=21.3
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|.+++|.++|++. +.++.-|..-+.-.... +.+++.++|++
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35555555555553 23445555555444444 55555555554
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=38.68 E-value=1e+02 Score=19.60 Aligned_cols=49 Identities=8% Similarity=-0.068 Sum_probs=35.5
Q ss_pred HHHHHHHHHccc---hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 4 LVYNSFLADFHL---CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 4 ~~Y~~fL~~fPl---~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
..|++.+...|- ...-|...+ .|..++|++.|++++..-|...+-|.+-
T Consensus 56 ~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 56 QNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 346666666553 223567776 7999999999999999888777766543
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.29 E-value=60 Score=24.63 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHHHH--------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 18 GYWRKAC--------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 18 ~YWkkya--------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
.|||-|. +|..+.|++-|.+|+.==|..-..|. =|.....
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~-nL~~Ae~ 194 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKS-NLKIAEQ 194 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHH-HHHHHHH
Confidence 4677666 67888888888888886665443333 3444443
No 147
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.74 E-value=2.1e+02 Score=22.85 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=22.0
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
|.+-|..||.--.|=---| +++.++|.+.|.+.++.-|..||
T Consensus 279 ~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 279 IGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 4444555555554444444 55555555555555555555444
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=36.37 E-value=94 Score=24.63 Aligned_cols=45 Identities=2% Similarity=-0.152 Sum_probs=26.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|...++||+.--| |.+-+...-.+.... ++++..+.+++
T Consensus 433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777777777777666 454444444444444 66666555544
No 149
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=53 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=29.4
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
.|-+-+...|+--.||.+=| +.+.+.+.+-..||++-+|+++-
T Consensus 32 ~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 32 CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 68888999999999999988 44455555555555555554443
No 150
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=34.41 E-value=90 Score=18.02 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhcc--CcHHHHHHHHHHHhhc---------Ccchhhhhhhhh
Q 041861 28 LTRVVEVFEQSMQSAT--YSSDVWFHYCNLASEV---------PPDGHRKSEYQE 71 (73)
Q Consensus 28 ~~~a~~V~erav~~~p--~SvdLW~~Yl~f~~~~---------~~~~~~~lf~~~ 71 (73)
+++|.+-.++++.++. .++|+-..-|...... +.|-...||++|
T Consensus 18 L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 18 LEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 5667777777776554 3466666555554433 344445577765
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.16 E-value=51 Score=14.66 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.8
Q ss_pred hcchHHHHHHHHHHHh
Q 041861 25 CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 25 ~~~~~~a~~V~erav~ 40 (73)
.|..++|.++|++-.+
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 13 MGQFEEALEVFDEMRE 28 (31)
T ss_pred cchHHHHHHHHHHHhH
Confidence 6888999999887554
No 152
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=34.14 E-value=1.3e+02 Score=19.44 Aligned_cols=66 Identities=9% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHccchHH-HHHHHH----hcc-----hHHHHHHHHHHHhh-ccCcHHHHHHHHHHHhhc----Ccchhhhhhh
Q 041861 5 VYNSFLADFHLCYG-YWRKAC----CAL-----LTRVVEVFEQSMQS-ATYSSDVWFHYCNLASEV----PPDGHRKSEY 69 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~-YWkkya----~~~-----~~~a~~V~erav~~-~p~SvdLW~~Yl~f~~~~----~~~~~~~lf~ 69 (73)
.-+....+|-++|. -||-.- ..| ....+++++.|.+. +-...+.|.+++.-.-.+ |.+.+.+++.
T Consensus 26 ~~~g~IqrFE~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~RN~tsHtYde~~a~~i~~ 105 (123)
T TIGR01987 26 IIDGAIQKFEFTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDRNITSHTYDQEKAREIYA 105 (123)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHhCcccccCCHHHHHHHHH
Confidence 35677889999998 887444 222 33457777777663 334688999999877655 7777777665
Q ss_pred h
Q 041861 70 Q 70 (73)
Q Consensus 70 ~ 70 (73)
+
T Consensus 106 ~ 106 (123)
T TIGR01987 106 Q 106 (123)
T ss_pred H
Confidence 4
No 153
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=34.09 E-value=2.3e+02 Score=24.99 Aligned_cols=63 Identities=11% Similarity=0.246 Sum_probs=49.5
Q ss_pred HHHHHHHHHccchHHHHHHHH---hc------chHHHHHHHHHHHhhccCcHHHHHHHHHHHhhcCcchhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC---CA------LLTRVVEVFEQSMQSATYSSDVWFHYCNLASEVPPDGHRK 66 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya---~~------~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~~~~~~~~ 66 (73)
..|++++..+|-++.-=+-.. .+ -.++|..+..+++...|-..+.|+.=..-.+.+||-..-.
T Consensus 363 ~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 363 FCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred HHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHH
Confidence 468999999999998777666 11 3589999999999999999999998666666667665533
No 154
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=33.07 E-value=98 Score=24.02 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH------hcchHHHHHHHHHHHh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC------CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya------~~~~~~a~~V~erav~ 40 (73)
...-+..+.+||- ...|.=+. .|++++|++.|++|+.
T Consensus 253 ~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 253 EELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 4566788899995 44554444 7999999999999885
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=32.38 E-value=64 Score=27.81 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=32.7
Q ss_pred cchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHH
Q 041861 14 HLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 14 Pl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
|-.++.|-..+ .+++++|.++.+.++...|.++++|.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy 69 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALY 69 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHH
Confidence 56677888887 68999999999999999999999886
No 156
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=32.16 E-value=58 Score=25.86 Aligned_cols=45 Identities=7% Similarity=-0.066 Sum_probs=0.0
Q ss_pred HH-hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 23 AC-CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 23 ya-~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
|+ .|.+++|.++|++..+ .++.-|..-+.-.... +.+++.++|++
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH
No 157
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=31.99 E-value=1.2e+02 Score=19.46 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHHHHc-cchHHHHHHHHhcchHHHHH----HHHHHHhhc
Q 041861 3 RLVYNSFLADF-HLCYGYWRKACCALLTRVVE----VFEQSMQSA 42 (73)
Q Consensus 3 r~~Y~~fL~~f-Pl~~~YWkkya~~~~~~a~~----V~erav~~~ 42 (73)
+..++.++.+| |.++.+..++. ++.+.|++ ||-+..++.
T Consensus 2 ~~~~~~l~~~y~~~i~~~~~~~~-~~~~daeDvvQe~~i~l~~~~ 45 (173)
T PRK12522 2 EEKVEELIDIYKQQIYSLCYKLA-KTKEDAEDIFQETWIKVFSSR 45 (173)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHH
Confidence 34567777664 88888888886 23444443 555555543
No 158
>PHA03396 lef-9 late expression factor 9; Provisional
Probab=31.82 E-value=1.6e+02 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHHccchHHHHHHHHhcc-hHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKACCAL-LTRVVEVFEQSMQSA 42 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya~~~-~~~a~~V~erav~~~ 42 (73)
++.-+++|..+|+.+..|+.|..+. ..+.++.+..+...+
T Consensus 312 ~~~v~~~l~~~Pli~~lW~~~~~~~fs~Rl~~ll~d~aL~~ 352 (493)
T PHA03396 312 RDKVEALLKKMPLIYKLWQNYKNEKFSKRLELLLRDVALVL 352 (493)
T ss_pred HHHHHHHHHhCHHHHHHHHHcCCChHHHHHHHHHHHhHhhh
Confidence 4567899999999999999998333 344444444444333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=31.75 E-value=1.4e+02 Score=19.12 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=29.5
Q ss_pred hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.|+.++|...|++++..-|.+ ...|.+...-.... +.++....+.
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 699999999999999765543 34565554443333 5555555443
No 160
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.72 E-value=79 Score=16.14 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=14.6
Q ss_pred HHHHHHH-----hcchHHHHHHHH
Q 041861 18 GYWRKAC-----CALLTRVVEVFE 36 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~e 36 (73)
++|.-+| .|..++|+++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4677777 789999999955
No 161
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.69 E-value=1.9e+02 Score=20.48 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----h---c-------chHHHHHHHHHHHhhccCcHH-HHH---HHHHHHhhc-Cc
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----C---A-------LLTRVVEVFEQSMQSATYSSD-VWF---HYCNLASEV-PP 61 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~---~-------~~~~a~~V~erav~~~p~Svd-LW~---~Yl~f~~~~-~~ 61 (73)
.|+.|+.-..+.|+-.+-+.++. + . -++.|++-||.|+.=-|.--| +|+ .|......+ |.
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 58889999999999999999998 2 2 245566666666665565444 664 344444444 66
Q ss_pred chhhhhhhh
Q 041861 62 DGHRKSEYQ 70 (73)
Q Consensus 62 ~~~~~lf~~ 70 (73)
.+.+..|++
T Consensus 90 ~~A~~~F~k 98 (186)
T PF06552_consen 90 AEAEEYFEK 98 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777775
No 162
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=31.39 E-value=1.1e+02 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHh----hccCcHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQ----SATYSSD 47 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~----~~p~Svd 47 (73)
+|..|.+||.-+-=....|.+++ ..+.+.+..-..+|+. +.|+|++
T Consensus 186 LR~lYR~Fl~~d~~~~~iY~~Wieeyg~~~R~~il~Fl~~AL~~DlqS~~Ps~~ 239 (372)
T PRK15338 186 LRASYRQFLQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCS 239 (372)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHhHHhcCCCCCC
Confidence 79999999999877667777777 5667788888888876 4666666
No 163
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=30.76 E-value=36 Score=15.69 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=11.2
Q ss_pred hcchHHHHHHHHH
Q 041861 25 CALLTRVVEVFEQ 37 (73)
Q Consensus 25 ~~~~~~a~~V~er 37 (73)
.|+.++|+.++++
T Consensus 14 ~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 14 QGDPDEAERLLRR 26 (26)
T ss_pred cCCHHHHHHHHhC
Confidence 7899999998875
No 164
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=1.2e+02 Score=24.79 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-ccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLAD-FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~-fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
+..++.+.+. ||..--+=-+-| ..+.|.|+.+||.-+++-|+-+|
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch
No 165
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.53 E-value=1.9e+02 Score=24.93 Aligned_cols=49 Identities=4% Similarity=0.022 Sum_probs=38.5
Q ss_pred HHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 11 ADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 11 ~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
.+-|-+.+---.+| -|.+++|...|+.+|+-=|.-+|-|++=...+.+.
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~ 163 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ 163 (966)
T ss_pred hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc
Confidence 44555555555555 68899999999999999999999999987777665
No 166
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=29.40 E-value=1.3e+02 Score=23.39 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 26 ALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 26 ~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
.+.+.|++++++.....|.| -||.-+-.-+... +++...+.|++
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46789999999999999985 4777766666555 88888887774
No 167
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=29.40 E-value=1.4e+02 Score=19.27 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=22.9
Q ss_pred HHHHHHHHHc-cchHHHHHHHHhcchHHHHH----HHHHHHh
Q 041861 4 LVYNSFLADF-HLCYGYWRKACCALLTRVVE----VFEQSMQ 40 (73)
Q Consensus 4 ~~Y~~fL~~f-Pl~~~YWkkya~~~~~~a~~----V~erav~ 40 (73)
.+++.+..+| |.++++..++. ++.+.|++ ||-+...
T Consensus 20 ~a~~~l~~~~~~~l~~~~~~~~-~~~~~aeDlvQe~fi~l~~ 60 (186)
T PRK05602 20 AAFRVLVARKLPRLLALATRML-GDPAEAEDVAQETFLRIWK 60 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHH
Confidence 4677777776 99999988886 23333333 5555444
No 168
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=29.28 E-value=30 Score=24.66 Aligned_cols=15 Identities=33% Similarity=0.882 Sum_probs=12.8
Q ss_pred HHHHHHccchHHHHH
Q 041861 7 NSFLADFHLCYGYWR 21 (73)
Q Consensus 7 ~~fL~~fPl~~~YWk 21 (73)
.+|++-++|||+||.
T Consensus 48 RKfFaLL~lgFeyW~ 62 (196)
T PF07105_consen 48 RKFFALLNLGFEYWE 62 (196)
T ss_pred HHHHHHHHHHHHHcc
Confidence 567888999999995
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=28.86 E-value=87 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
-+++=|+.+|+..|-|..+- +++.+.|.+-|-|||.-=|..-+-|.|--..-+
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 45667888899999998776 778888888888888877777777766544333
No 170
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.66 E-value=3.5e+02 Score=23.44 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
.|++-|+.=|-.-.---..| .|+.++|+.-|.+|+.-.|+--|
T Consensus 308 ~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 308 TYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred HHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 45555555555544444444 45555555555555555555444
No 171
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=28.12 E-value=1.6e+02 Score=19.74 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=27.8
Q ss_pred hcchHHHHHHHHHHHhhc---cCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 25 CALLTRVVEVFEQSMQSA---TYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~---p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
.|+.+.|.+.|.|+.... -+.+|++.+=+...+.. |...+..
T Consensus 49 ~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 49 IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 899999999999987743 33566666655544433 4444443
No 172
>PF05094 LEF-9: Late expression factor 9 (LEF-9); InterPro: IPR007786 The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) encodes a DNA-dependent RNA polymerase that is required for transcription of viral late genes. This polymerase is composed of four equimolar subunits, LEF-8, LEF-4, LEF-9, and p47. LEF-9 is homologous to the largest beta-subunit of prokaryotic DNA-directed RNA polymerase [].; GO: 0019083 viral transcription
Probab=27.81 E-value=1.9e+02 Score=23.35 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHHHccchHHHHHHHHhcc-hHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKACCAL-LTRVVEVFEQSMQSA 42 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya~~~-~~~a~~V~erav~~~ 42 (73)
++.-+++|..+|+.+.-|+.|.... ..+.++.+..+...+
T Consensus 309 ~~~v~~~l~~~P~i~~lW~~~~~~~fs~Rl~~ll~d~aL~~ 349 (487)
T PF05094_consen 309 RNDVERLLKKYPLIYKLWQSYKNETFSKRLEKLLRDVALVL 349 (487)
T ss_pred HHHHHHHHhhCHHHHHHHHHccCChHHHHHHHHHHhhheec
Confidence 4566899999999999999998333 444444554444333
No 173
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=27.80 E-value=1.6e+02 Score=19.24 Aligned_cols=36 Identities=6% Similarity=0.139 Sum_probs=23.2
Q ss_pred HHHHHHHHHc-cchHHHHHHHHhcchHHHHHH----HHHHHhh
Q 041861 4 LVYNSFLADF-HLCYGYWRKACCALLTRVVEV----FEQSMQS 41 (73)
Q Consensus 4 ~~Y~~fL~~f-Pl~~~YWkkya~~~~~~a~~V----~erav~~ 41 (73)
.+++.++.+| |.+++| ..+ +++.+.|++| |-++..+
T Consensus 24 ~af~~l~~~~~~~l~~~-~~~-~~~~~~AeDivQe~flkl~~~ 64 (185)
T PRK09649 24 RALEAFIKATQQDVWRF-VAY-LSDVGSADDLTQETFLRAIGA 64 (185)
T ss_pred HHHHHHHHHHHHHHHHH-HHH-hCCHHHHHHHHHHHHHHHHHh
Confidence 4677777776 888888 444 5666666654 4455444
No 174
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=27.73 E-value=94 Score=16.68 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.4
Q ss_pred hcchHHHHHHHHHHHhh
Q 041861 25 CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~ 41 (73)
+|+.+.|+++++.-+..
T Consensus 12 ~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 12 MGDLEGARELLEEVIEE 28 (44)
T ss_pred cCChHHHHHHHHHHHHc
Confidence 89999999999998864
No 175
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=27.02 E-value=33 Score=22.76 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=11.5
Q ss_pred HccchHHHHHHHH
Q 041861 12 DFHLCYGYWRKAC 24 (73)
Q Consensus 12 ~fPl~~~YWkkya 24 (73)
.|||+-.||.|--
T Consensus 64 ~FPllv~yWektF 76 (120)
T cd03074 64 DFPLLVPYWEKTF 76 (120)
T ss_pred cCchhhHHHHhhc
Confidence 6999999999865
No 176
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.00 E-value=1.9e+02 Score=19.08 Aligned_cols=39 Identities=5% Similarity=-0.144 Sum_probs=28.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhcc
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p 43 (73)
...++++...|.-.-| .+|+ .|+.++|..+.+++-.-+|
T Consensus 132 ~~a~~~l~~~P~~~~~-~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVY-QRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3456778888865443 4444 7889999999999988888
No 177
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.54 E-value=59 Score=19.55 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=13.6
Q ss_pred hcchHHHHHHHHHHHhhc
Q 041861 25 CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~ 42 (73)
.|+.++|.+.|..||+.+
T Consensus 19 ~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 19 KGNAEEAIELYTEAVELC 36 (75)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 577888888888877654
No 178
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=26.52 E-value=2e+02 Score=20.33 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=29.8
Q ss_pred HHHHHHHhcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 18 GYWRKACCALLTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 18 ~YWkkya~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
..|++ .++.+.+.+++.+.|.+++.+-.-+...+..+..
T Consensus 129 ~il~~--~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 129 EILLK--SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHhc--cCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 34444 6789999999999999998776777776666643
No 179
>PLN03218 maturation of RBCL 1; Provisional
Probab=26.33 E-value=1.8e+02 Score=25.29 Aligned_cols=46 Identities=7% Similarity=-0.054 Sum_probs=23.9
Q ss_pred hcchHHHHHHHHHHHh-hccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQ-SATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~-~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|..++|.++|++... .+..++..|..-+.-.... +.+++.++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556666666665443 2333455555555444444 55555555543
No 180
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.01 E-value=76 Score=14.11 Aligned_cols=16 Identities=13% Similarity=0.443 Sum_probs=13.7
Q ss_pred hcchHHHHHHHHHHHh
Q 041861 25 CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 25 ~~~~~~a~~V~erav~ 40 (73)
.|..++|.++|.+-..
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 13 AGRVEEALELFKEMLE 28 (35)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7889999999988665
No 181
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=25.92 E-value=73 Score=22.52 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=20.4
Q ss_pred hccCcHHHHHHHHHHHhhcCcchhhhhh
Q 041861 41 SATYSSDVWFHYCNLASEVPPDGHRKSE 68 (73)
Q Consensus 41 ~~p~SvdLW~~Yl~f~~~~~~~~~~~lf 68 (73)
..|-.- =|..|+.|+.++=|+.+++.+
T Consensus 60 ~lP~~~-TWk~Y~~FLL~TlP~~tr~~Y 86 (181)
T PF11922_consen 60 KLPEGH-TWKSYAEFLLDTLPEKTREHY 86 (181)
T ss_pred CCCCCC-CHHHHHHHHHHcCCHHHHHHH
Confidence 356655 799999999999666666643
No 182
>PRK11906 transcriptional regulator; Provisional
Probab=25.82 E-value=2.7e+02 Score=22.34 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=38.1
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc-----HHHHH-HHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS-----SDVWF-HYC 53 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S-----vdLW~-~Yl 53 (73)
..+++-+.-.|-...-|--.+ .|..++|.+-.++|++-=|.- +.||+ -|+
T Consensus 359 ~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 359 ILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 457777888888888777777 688999999999998865653 34888 555
No 183
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.59 E-value=1.4e+02 Score=22.46 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=26.1
Q ss_pred HHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhh
Q 041861 7 NSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 7 ~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~ 41 (73)
-.+|.++|+=-+-=-..+ .|+.+.|.+..|||+-.
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899998877776666 67777777777777654
No 184
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=25.11 E-value=74 Score=18.99 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=26.2
Q ss_pred cchHHHHHHHH--hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 14 HLCYGYWRKAC--CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 14 Pl~~~YWkkya--~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
+-+..=|+.+| +|-.+..++.+++.-...-.-+..|.+
T Consensus 12 ~nlG~dW~~LA~~LG~~~~~I~~i~~~~~p~~~lL~~W~~ 51 (77)
T cd08311 12 GRPGRDWRSLAGELGYEDEAIDTFGREESPVRTLLADWSA 51 (77)
T ss_pred CCCccCHHHHHHHcCCCHHHHHHHHcChhHHHHHHHHHHH
Confidence 34566799999 888888888887665433334567775
No 185
>PRK13910 DNA glycosylase MutY; Provisional
Probab=25.09 E-value=1.5e+02 Score=21.99 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.0
Q ss_pred HHHHHHHHHccchHHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC 24 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya 24 (73)
..|++|+++||- |...|
T Consensus 13 ~yy~rf~~~fPt----~e~La 29 (289)
T PRK13910 13 RFYSPFLEAFPT----LKDLA 29 (289)
T ss_pred HHHHHHHHHCCC----HHHHH
Confidence 489999999997 56666
No 186
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=24.81 E-value=2.1e+02 Score=24.52 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|-+-++-=|.-+.-|-.++ ++...+|-..+.+|++.---+..+|-||......+ .-+++.+...|.
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 44455555677788888888 78888888888888886666788888888877766 555555555443
No 187
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.78 E-value=1.5e+02 Score=23.42 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=32.2
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
.|+.|+|..+||.|+.--|..+|.=+.|-.|...+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~ 163 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH 163 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh
Confidence 58899999999999999999999999999998866
No 188
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.73 E-value=1.8e+02 Score=17.91 Aligned_cols=21 Identities=14% Similarity=0.649 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHccchHHHHHHHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC 24 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya 24 (73)
++..|+.|...=| ...||++|
T Consensus 6 l~~~f~~i~~~V~--~~~Wk~la 26 (96)
T cd08315 6 LRRSFDHFIKEVP--FDSWNRLM 26 (96)
T ss_pred HHHHHHHHHHHCC--HHHHHHHH
Confidence 5666777777666 78999999
No 189
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.03 E-value=2.4e+02 Score=22.49 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH--h--------cchHHHHHHHHHHHhhccCc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC--C--------ALLTRVVEVFEQSMQSATYS 45 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya--~--------~~~~~a~~V~erav~~~p~S 45 (73)
..+|..+|.++|=++.|=..+. + ++.+...++|+.--...|.|
T Consensus 58 ~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s 110 (517)
T PF12569_consen 58 EKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS 110 (517)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc
Confidence 5678888888888888888888 2 13556666777665555543
No 190
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.02 E-value=83 Score=17.61 Aligned_cols=18 Identities=6% Similarity=0.294 Sum_probs=13.9
Q ss_pred hcchHHHHHHHHHHHhhc
Q 041861 25 CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~ 42 (73)
.|+.+.|.+-|..|+..+
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 578888888888887743
No 191
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.01 E-value=97 Score=24.95 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHH---hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 18 GYWRKAC---CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 18 ~YWkkya---~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
+-|.-++ +|+.++|.++|+-....=...-+||++
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 5688777 888888888888877743334566654
No 192
>PF12854 PPR_1: PPR repeat
Probab=23.90 E-value=73 Score=15.59 Aligned_cols=13 Identities=15% Similarity=0.462 Sum_probs=11.3
Q ss_pred hcchHHHHHHHHH
Q 041861 25 CALLTRVVEVFEQ 37 (73)
Q Consensus 25 ~~~~~~a~~V~er 37 (73)
.|..++|.+++++
T Consensus 20 ~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 20 AGRVDEAFELFDE 32 (34)
T ss_pred CCCHHHHHHHHHh
Confidence 6889999999875
No 193
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.56 E-value=79 Score=19.12 Aligned_cols=16 Identities=0% Similarity=0.135 Sum_probs=14.2
Q ss_pred hcchHHHHHHHHHHHh
Q 041861 25 CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 25 ~~~~~~a~~V~erav~ 40 (73)
.|..+.|+..|++|+.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5889999999999987
No 194
>PF12741 SusD-like: Susd and RagB outer membrane lipoprotein ; PDB: 3CGH_A 3EHM_A 3EHN_B 3GZS_B 3SGH_B 4F7A_A 3P1U_B.
Probab=22.77 E-value=1e+02 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHHH------------hcchHHHHHHHHHHHh
Q 041861 18 GYWRKAC------------CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 18 ~YWkkya------------~~~~~~a~~V~erav~ 40 (73)
.=|+||| .-+.+.|.+..|.|+.
T Consensus 221 ~KW~KfANSLrLRlAmRis~vdp~~Ak~~ae~A~~ 255 (529)
T PF12741_consen 221 AKWKKFANSLRLRLAMRISKVDPAKAKQEAEEAVA 255 (529)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 4699999 2567889999999998
No 195
>PF11326 DUF3128: Protein of unknown function (DUF3128); InterPro: IPR021475 This eukaryotic family of proteins has no known function.
Probab=22.66 E-value=96 Score=18.51 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=28.3
Q ss_pred HHccchHHHHHHHH------hc---chHHHHHHHHHHHh---hccCcHHHHH
Q 041861 11 ADFHLCYGYWRKAC------CA---LLTRVVEVFEQSMQ---SATYSSDVWF 50 (73)
Q Consensus 11 ~~fPl~~~YWkkya------~~---~~~~a~~V~erav~---~~p~SvdLW~ 50 (73)
..++-|.+-|.++- .. ..+++.+++++-.. .-|.|-|.|.
T Consensus 31 G~~~~C~~~~~df~~C~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~sedVW~ 82 (84)
T PF11326_consen 31 GEFDDCSQWWEDFKFCLRWKSKPEKRPEEVQEILKKREKERRKQGSSEDVWE 82 (84)
T ss_pred CCCccHHHHHHHHHHHHHhccCCccCHHHHHHHHHHhHHHHhcCCCcCcccC
Confidence 35677888999988 22 56777788877642 3677888884
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.62 E-value=1.7e+02 Score=25.35 Aligned_cols=51 Identities=6% Similarity=0.052 Sum_probs=31.1
Q ss_pred HHHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHhhcc------CcHHHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQSAT------YSSDVWFHYCN 54 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~~~p------~SvdLW~~Yl~ 54 (73)
.+|++.|.--|-...-=.+|| ..++++|++.+.+||...= --.++|..||.
T Consensus 137 ~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 137 GVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence 456666666666666666666 2277777777777776421 12347777665
No 197
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=21.96 E-value=1.2e+02 Score=25.35 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHHHHHHH---------hcchHHHHHHHHHHHh---hccCcHHHHHHHHHHHhhcCcchhhhhhhhh
Q 041861 17 YGYWRKAC---------CALLTRVVEVFEQSMQ---SATYSSDVWFHYCNLASEVPPDGHRKSEYQE 71 (73)
Q Consensus 17 ~~YWkkya---------~~~~~~a~~V~erav~---~~p~SvdLW~~Yl~f~~~~~~~~~~~lf~~~ 71 (73)
-|-||+-+ ..|+..-..+.-|+++ ++|.-+||=.+-+..-..-+.....++||++
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (831)
T PRK15180 627 LGAWKDACTLAHMTLIRNSNITSLQSIMLRSIRHINNIPFLIDLIANVMSITLSFQNASMNKLFEKE 693 (831)
T ss_pred cchhhhhHHHHHHHHHhcCCchhHHHHHHHHHhhhcCchhHHHHHHHhHheeeeecchhHHHHHHHH
Confidence 47899977 4677777778888877 5777788776544433222677778888875
No 198
>COG2097 RPL31A Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]
Probab=21.81 E-value=56 Score=20.56 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHhhccCcH
Q 041861 27 LLTRVVEVFEQSMQSATYSS 46 (73)
Q Consensus 27 ~~~~a~~V~erav~~~p~Sv 46 (73)
+.+=.+.|++||++..|..+
T Consensus 50 d~~lNe~iW~rG~ekpP~kl 69 (89)
T COG2097 50 DPSLNEKIWERGIEKPPSKL 69 (89)
T ss_pred CHHHhHHHHHhhccCCCceE
Confidence 45666789999999998754
No 199
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=21.79 E-value=88 Score=19.08 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHhhcc
Q 041861 27 LLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 27 ~~~~a~~V~erav~~~p 43 (73)
.++.|+..|+||+.-.-
T Consensus 32 ~Le~sl~~~erG~~L~k 48 (81)
T COG1722 32 PLEEALKEFERGMALYK 48 (81)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 48899999999988543
No 200
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.61 E-value=1e+02 Score=17.48 Aligned_cols=17 Identities=6% Similarity=0.311 Sum_probs=12.3
Q ss_pred hcchHHHHHHHHHHHhh
Q 041861 25 CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~ 41 (73)
.|+.+.|...|..|+..
T Consensus 21 ~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 21 AGDYEEALELYKKAIEY 37 (77)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 56777777777777764
No 201
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.06 E-value=3e+02 Score=23.12 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=35.9
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhcCcchhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEVPPDGHRKS 67 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~~~~~~~~l 67 (73)
.|+.++|..++|.-+.-.|.+.|+=+.=.......||+....+
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESL 513 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 6899999999999999889999988876666666688777654
Done!