Query 041861
Match_columns 73
No_of_seqs 101 out of 171
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 99.5 1E-14 3.5E-19 113.9 7.7 69 2-70 85-172 (679)
2 2ooe_A Cleavage stimulation fa 99.2 3.1E-11 1.1E-15 87.6 7.4 68 2-70 31-109 (530)
3 2uy1_A Cleavage stimulation fa 99.2 1.7E-11 5.9E-16 91.3 6.1 59 1-70 13-73 (493)
4 4e6h_A MRNA 3'-END-processing 98.9 2.7E-09 9.3E-14 83.4 7.3 70 2-71 328-404 (679)
5 2uy1_A Cleavage stimulation fa 98.6 9.4E-08 3.2E-12 71.2 7.7 53 2-55 198-255 (493)
6 2ooe_A Cleavage stimulation fa 98.6 8.2E-08 2.8E-12 69.6 7.1 67 5-71 1-72 (530)
7 4h7y_A Dual specificity protei 98.5 2.1E-07 7.2E-12 63.1 5.9 58 13-70 9-85 (161)
8 2ond_A Cleavage stimulation fa 98.5 8.3E-07 2.8E-11 60.3 8.0 69 3-71 36-125 (308)
9 2ond_A Cleavage stimulation fa 98.4 9.7E-07 3.3E-11 60.0 7.9 69 2-70 188-266 (308)
10 4h7y_A Dual specificity protei 97.6 0.00011 3.8E-09 49.7 5.5 69 2-70 38-119 (161)
11 1elw_A TPR1-domain of HOP; HOP 97.6 0.00092 3.2E-08 37.0 8.5 68 3-70 24-97 (118)
12 2xcb_A PCRH, regulatory protei 97.5 0.00072 2.4E-08 40.8 8.2 68 3-70 38-111 (142)
13 3gyz_A Chaperone protein IPGC; 97.5 0.00062 2.1E-08 43.2 8.0 68 3-70 56-129 (151)
14 2kat_A Uncharacterized protein 97.5 0.0008 2.8E-08 38.8 7.4 68 3-70 5-78 (115)
15 3q49_B STIP1 homology and U bo 97.4 0.0018 6.3E-08 37.5 8.5 68 3-70 29-102 (137)
16 1na0_A Designed protein CTPR3; 97.4 0.0021 7.3E-08 35.7 8.5 68 3-70 29-102 (125)
17 1hxi_A PEX5, peroxisome target 97.4 0.0011 3.7E-08 39.6 7.4 68 3-70 37-110 (121)
18 2lni_A Stress-induced-phosphop 97.4 0.0015 5.1E-08 37.2 7.6 68 3-70 36-109 (133)
19 2vyi_A SGTA protein; chaperone 97.4 0.0026 8.8E-08 35.7 8.5 68 3-70 32-105 (131)
20 3upv_A Heat shock protein STI1 97.3 0.0028 9.5E-08 36.8 8.5 68 3-70 24-97 (126)
21 2vgx_A Chaperone SYCD; alterna 97.3 0.0021 7E-08 39.6 8.1 68 3-70 41-114 (148)
22 2fo7_A Synthetic consensus TPR 97.3 0.0036 1.2E-07 34.9 8.5 64 5-68 23-92 (136)
23 2kck_A TPR repeat; tetratricop 97.3 0.0044 1.5E-07 34.0 8.8 68 3-70 26-102 (112)
24 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0027 9.4E-08 38.7 8.5 68 3-70 31-104 (164)
25 2fo7_A Synthetic consensus TPR 97.3 0.0038 1.3E-07 34.8 8.4 68 3-70 55-128 (136)
26 4ga2_A E3 SUMO-protein ligase 97.3 0.0029 1E-07 38.8 8.6 57 3-59 51-112 (150)
27 1a17_A Serine/threonine protei 97.2 0.0036 1.2E-07 36.9 8.5 66 4-69 34-105 (166)
28 2e2e_A Formate-dependent nitri 97.2 0.0034 1.2E-07 38.3 8.5 67 4-70 31-106 (177)
29 4gco_A Protein STI-1; structur 97.2 0.0042 1.4E-07 37.3 8.5 68 3-70 33-106 (126)
30 3vtx_A MAMA; tetratricopeptide 97.1 0.0044 1.5E-07 37.9 8.5 68 3-70 93-166 (184)
31 3k9i_A BH0479 protein; putativ 97.1 0.0018 6.1E-08 37.7 6.3 68 3-70 10-86 (117)
32 3as5_A MAMA; tetratricopeptide 97.1 0.0052 1.8E-07 36.3 8.5 64 5-68 98-167 (186)
33 2xev_A YBGF; tetratricopeptide 97.1 0.0056 1.9E-07 35.1 8.3 68 3-70 22-101 (129)
34 3as5_A MAMA; tetratricopeptide 97.0 0.0071 2.4E-07 35.7 8.5 68 3-70 62-135 (186)
35 3mkr_A Coatomer subunit epsilo 97.0 0.0054 1.9E-07 41.7 8.5 68 3-70 186-260 (291)
36 2dba_A Smooth muscle cell asso 97.0 0.0053 1.8E-07 35.5 7.3 68 3-70 48-124 (148)
37 1elr_A TPR2A-domain of HOP; HO 97.0 0.0073 2.5E-07 33.8 7.7 68 3-70 24-104 (131)
38 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.0064 2.2E-07 38.6 8.2 68 3-70 63-136 (275)
39 2q7f_A YRRB protein; TPR, prot 96.9 0.01 3.5E-07 37.0 8.6 25 26-50 139-163 (243)
40 4eqf_A PEX5-related protein; a 96.9 0.0083 2.8E-07 40.2 8.5 68 3-70 85-158 (365)
41 4eqf_A PEX5-related protein; a 96.9 0.0088 3E-07 40.1 8.5 66 4-69 234-305 (365)
42 2q7f_A YRRB protein; TPR, prot 96.8 0.012 4.2E-07 36.5 8.6 68 3-70 145-218 (243)
43 3urz_A Uncharacterized protein 96.8 0.0081 2.8E-07 38.4 7.9 44 25-68 67-111 (208)
44 2ho1_A Type 4 fimbrial biogene 96.8 0.012 4E-07 37.2 8.5 67 4-70 58-130 (252)
45 2pl2_A Hypothetical conserved 96.8 0.0092 3.1E-07 38.4 7.8 67 4-70 60-143 (217)
46 3uq3_A Heat shock protein STI1 96.7 0.017 6E-07 35.9 8.5 66 4-69 160-231 (258)
47 2vq2_A PILW, putative fimbrial 96.6 0.02 6.8E-07 34.9 8.2 15 26-40 91-105 (225)
48 3vtx_A MAMA; tetratricopeptide 96.6 0.024 8.2E-07 34.5 8.5 67 3-69 25-97 (184)
49 3cv0_A Peroxisome targeting si 96.6 0.021 7.2E-07 36.8 8.5 68 3-70 41-114 (327)
50 3cv0_A Peroxisome targeting si 96.6 0.021 7.2E-07 36.8 8.5 64 5-68 194-263 (327)
51 3ieg_A DNAJ homolog subfamily 96.5 0.019 6.5E-07 37.3 8.2 68 3-70 23-96 (359)
52 3ieg_A DNAJ homolog subfamily 96.5 0.018 6.3E-07 37.4 8.1 68 3-70 140-213 (359)
53 2kc7_A BFR218_protein; tetratr 96.5 0.022 7.4E-07 31.5 7.4 48 3-50 20-73 (99)
54 1a17_A Serine/threonine protei 96.5 0.021 7.2E-07 33.5 7.6 67 3-69 67-141 (166)
55 2vq2_A PILW, putative fimbrial 96.5 0.017 5.9E-07 35.2 7.4 45 5-49 135-185 (225)
56 2ho1_A Type 4 fimbrial biogene 96.5 0.021 7.1E-07 36.0 8.0 66 4-69 92-165 (252)
57 2e2e_A Formate-dependent nitri 96.5 0.025 8.7E-07 34.3 8.0 68 3-70 64-140 (177)
58 1fch_A Peroxisomal targeting s 96.4 0.02 6.8E-07 37.9 8.0 68 3-70 84-157 (368)
59 1w3b_A UDP-N-acetylglucosamine 96.4 0.025 8.5E-07 38.3 8.5 66 4-69 292-363 (388)
60 3hym_B Cell division cycle pro 96.4 0.025 8.5E-07 36.5 8.0 66 4-69 146-217 (330)
61 1elw_A TPR1-domain of HOP; HOP 96.4 0.032 1.1E-06 30.5 7.5 53 3-55 58-115 (118)
62 2vyi_A SGTA protein; chaperone 96.4 0.035 1.2E-06 30.8 7.7 55 3-57 66-125 (131)
63 1w3b_A UDP-N-acetylglucosamine 96.4 0.025 8.5E-07 38.3 8.2 52 4-55 122-178 (388)
64 1fch_A Peroxisomal targeting s 96.3 0.028 9.6E-07 37.2 8.2 65 4-68 272-353 (368)
65 3uq3_A Heat shock protein STI1 96.3 0.027 9.2E-07 35.1 7.7 67 4-70 126-198 (258)
66 2y4t_A DNAJ homolog subfamily 96.3 0.03 1E-06 38.2 8.5 68 3-70 46-119 (450)
67 3ma5_A Tetratricopeptide repea 96.3 0.018 6E-07 32.9 6.3 58 13-70 3-66 (100)
68 3hym_B Cell division cycle pro 96.3 0.024 8.3E-07 36.6 7.5 64 5-68 78-148 (330)
69 1na3_A Designed protein CTPR2; 96.3 0.047 1.6E-06 29.1 7.7 47 5-51 31-82 (91)
70 2vgx_A Chaperone SYCD; alterna 96.3 0.014 4.8E-07 35.8 6.1 66 5-70 9-80 (148)
71 2c2l_A CHIP, carboxy terminus 96.3 0.03 1E-06 37.7 8.1 68 3-70 24-97 (281)
72 4i17_A Hypothetical protein; T 96.2 0.045 1.5E-06 34.5 8.2 45 4-48 63-112 (228)
73 2l6j_A TPR repeat-containing p 96.2 0.026 9E-07 31.2 6.4 43 3-45 24-71 (111)
74 2xcb_A PCRH, regulatory protei 96.1 0.0072 2.5E-07 36.2 4.2 66 5-70 6-77 (142)
75 2lni_A Stress-induced-phosphop 96.1 0.043 1.5E-06 30.8 7.3 54 3-56 70-128 (133)
76 2r5s_A Uncharacterized protein 96.1 0.04 1.4E-06 33.9 7.6 67 3-69 94-168 (176)
77 1na3_A Designed protein CTPR2; 96.1 0.035 1.2E-06 29.6 6.6 55 16-70 8-68 (91)
78 2xpi_A Anaphase-promoting comp 96.1 0.035 1.2E-06 39.4 8.2 67 4-70 360-432 (597)
79 3fp2_A TPR repeat-containing p 96.1 0.031 1.1E-06 38.9 7.8 67 4-70 331-403 (537)
80 2y4t_A DNAJ homolog subfamily 96.1 0.03 1E-06 38.2 7.4 68 3-70 163-236 (450)
81 4i17_A Hypothetical protein; T 96.0 0.062 2.1E-06 33.8 8.4 68 3-70 27-101 (228)
82 3u4t_A TPR repeat-containing p 96.0 0.03 1E-06 35.5 6.8 65 4-68 95-165 (272)
83 3urz_A Uncharacterized protein 96.0 0.044 1.5E-06 34.9 7.5 53 3-55 74-131 (208)
84 2dba_A Smooth muscle cell asso 95.9 0.06 2E-06 30.9 7.4 54 3-56 85-143 (148)
85 1hh8_A P67PHOX, NCF-2, neutrop 95.9 0.066 2.3E-06 33.0 8.1 68 3-70 57-146 (213)
86 2pl2_A Hypothetical conserved 95.9 0.065 2.2E-06 34.3 8.1 65 4-69 105-175 (217)
87 2vsy_A XCC0866; transferase, g 95.9 0.037 1.3E-06 40.2 7.6 64 5-68 45-114 (568)
88 2h6f_A Protein farnesyltransfe 95.9 0.052 1.8E-06 39.0 8.3 67 4-70 118-191 (382)
89 2xpi_A Anaphase-promoting comp 95.8 0.048 1.6E-06 38.7 7.8 67 4-70 394-466 (597)
90 2l6j_A TPR repeat-containing p 95.7 0.046 1.6E-06 30.1 6.2 46 25-70 17-63 (111)
91 2kck_A TPR repeat; tetratricop 95.7 0.018 6.3E-07 31.4 4.4 46 25-70 19-65 (112)
92 4gyw_A UDP-N-acetylglucosamine 95.7 0.057 1.9E-06 42.2 8.5 67 4-70 30-102 (723)
93 4ga2_A E3 SUMO-protein ligase 95.7 0.023 8E-07 34.7 5.1 65 6-70 20-90 (150)
94 3k9i_A BH0479 protein; putativ 95.7 0.05 1.7E-06 31.3 6.3 47 3-49 47-98 (117)
95 2gw1_A Mitochondrial precursor 95.6 0.092 3.2E-06 36.1 8.5 67 3-70 26-98 (514)
96 3fp2_A TPR repeat-containing p 95.6 0.064 2.2E-06 37.3 7.8 67 3-69 45-117 (537)
97 2fbn_A 70 kDa peptidylprolyl i 95.6 0.091 3.1E-06 32.7 7.6 47 6-52 111-162 (198)
98 1p5q_A FKBP52, FK506-binding p 95.5 0.1 3.4E-06 36.1 8.5 38 18-55 197-239 (336)
99 3gyz_A Chaperone protein IPGC; 95.5 0.016 5.4E-07 36.5 3.8 65 6-70 25-95 (151)
100 3rkv_A Putative peptidylprolyl 95.5 0.16 5.4E-06 30.5 8.3 54 13-66 59-118 (162)
101 2xev_A YBGF; tetratricopeptide 95.4 0.079 2.7E-06 30.0 6.5 49 3-51 59-115 (129)
102 4abn_A Tetratricopeptide repea 95.4 0.076 2.6E-06 38.4 7.7 68 3-70 199-283 (474)
103 2vsy_A XCC0866; transferase, g 95.4 0.047 1.6E-06 39.6 6.6 68 3-70 9-82 (568)
104 3q49_B STIP1 homology and U bo 95.4 0.09 3.1E-06 30.1 6.7 57 14-70 6-68 (137)
105 3upv_A Heat shock protein STI1 95.3 0.14 4.6E-06 29.4 7.4 52 3-54 58-120 (126)
106 1xnf_A Lipoprotein NLPI; TPR, 95.3 0.094 3.2E-06 33.0 7.2 67 4-70 26-102 (275)
107 2gw1_A Mitochondrial precursor 95.3 0.08 2.7E-06 36.4 7.3 67 4-70 325-397 (514)
108 4gco_A Protein STI-1; structur 95.3 0.091 3.1E-06 31.3 6.8 51 3-53 67-122 (126)
109 1wao_1 Serine/threonine protei 95.3 0.097 3.3E-06 38.2 8.1 68 3-70 26-99 (477)
110 1na0_A Designed protein CTPR3; 95.3 0.16 5.5E-06 27.7 7.7 52 3-54 63-119 (125)
111 4gyw_A UDP-N-acetylglucosamine 95.2 0.1 3.5E-06 40.8 8.5 52 5-56 65-121 (723)
112 3sz7_A HSC70 cochaperone (SGT) 95.0 0.07 2.4E-06 32.2 5.6 49 3-51 65-118 (164)
113 3u4t_A TPR repeat-containing p 94.9 0.069 2.4E-06 33.9 5.7 37 4-40 24-65 (272)
114 2fbn_A 70 kDa peptidylprolyl i 94.7 0.21 7E-06 31.0 7.5 54 17-70 88-147 (198)
115 2h6f_A Protein farnesyltransfe 94.7 0.12 4.2E-06 37.0 7.2 47 5-51 154-205 (382)
116 1elr_A TPR2A-domain of HOP; HO 94.6 0.17 5.7E-06 28.0 6.3 46 25-70 17-63 (131)
117 1hxi_A PEX5, peroxisome target 94.6 0.14 4.7E-06 30.1 6.1 46 25-70 30-76 (121)
118 3qou_A Protein YBBN; thioredox 94.6 0.26 9E-06 32.9 8.2 63 4-66 206-276 (287)
119 3ma5_A Tetratricopeptide repea 94.5 0.061 2.1E-06 30.6 4.3 45 3-47 27-76 (100)
120 2pzi_A Probable serine/threoni 94.4 0.16 5.4E-06 38.6 7.5 66 3-69 453-524 (681)
121 2kc7_A BFR218_protein; tetratr 94.4 0.11 3.8E-06 28.5 5.0 46 25-70 13-60 (99)
122 4gcn_A Protein STI-1; structur 94.3 0.16 5.5E-06 30.0 6.0 44 3-46 28-76 (127)
123 3edt_B KLC 2, kinesin light ch 94.3 0.23 7.8E-06 31.0 6.9 67 4-70 106-194 (283)
124 1p5q_A FKBP52, FK506-binding p 94.3 0.24 8.2E-06 34.1 7.6 57 3-59 216-277 (336)
125 2yhc_A BAMD, UPF0169 lipoprote 94.2 0.26 9E-06 31.3 7.3 68 3-70 116-209 (225)
126 1kt0_A FKBP51, 51 kDa FK506-bi 94.2 0.32 1.1E-05 35.1 8.4 66 4-69 289-375 (457)
127 3mkr_A Coatomer subunit epsilo 94.2 0.34 1.2E-05 32.7 8.1 68 3-70 150-225 (291)
128 2if4_A ATFKBP42; FKBP-like, al 94.1 0.32 1.1E-05 33.6 8.0 52 19-70 232-289 (338)
129 3qky_A Outer membrane assembly 94.1 0.2 6.9E-06 32.2 6.6 43 3-45 35-85 (261)
130 1ihg_A Cyclophilin 40; ppiase 93.9 0.34 1.1E-05 34.3 7.9 58 12-69 268-331 (370)
131 3qou_A Protein YBBN; thioredox 93.9 0.28 9.7E-06 32.8 7.2 35 4-38 138-177 (287)
132 3edt_B KLC 2, kinesin light ch 93.8 0.35 1.2E-05 30.1 7.1 67 4-70 64-152 (283)
133 3nf1_A KLC 1, kinesin light ch 93.6 0.34 1.2E-05 30.8 6.9 67 4-70 132-220 (311)
134 2kat_A Uncharacterized protein 93.6 0.19 6.6E-06 28.4 5.2 42 3-44 39-85 (115)
135 4gcn_A Protein STI-1; structur 93.3 0.33 1.1E-05 28.6 6.2 46 25-70 21-67 (127)
136 2pzi_A Probable serine/threoni 93.3 0.29 9.8E-06 37.2 7.0 67 4-70 412-492 (681)
137 3nf1_A KLC 1, kinesin light ch 93.2 0.48 1.6E-05 30.1 7.1 67 4-70 90-178 (311)
138 3qky_A Outer membrane assembly 93.0 0.58 2E-05 30.0 7.3 48 3-50 72-135 (261)
139 4abn_A Tetratricopeptide repea 92.9 0.44 1.5E-05 34.3 7.2 57 3-59 241-305 (474)
140 2if4_A ATFKBP42; FKBP-like, al 92.3 0.2 6.7E-06 34.7 4.6 53 3-55 250-307 (338)
141 2r5s_A Uncharacterized protein 92.1 0.15 5.3E-06 31.2 3.5 47 3-50 26-77 (176)
142 1hh8_A P67PHOX, NCF-2, neutrop 92.1 0.67 2.3E-05 28.3 6.5 55 16-70 36-96 (213)
143 2c2l_A CHIP, carboxy terminus 91.6 0.71 2.4E-05 30.8 6.7 53 18-70 5-63 (281)
144 3rkv_A Putative peptidylprolyl 91.5 1.3 4.6E-05 26.2 7.6 49 3-51 83-137 (162)
145 4g1t_A Interferon-induced prot 91.2 0.8 2.7E-05 31.4 6.7 49 3-51 233-286 (472)
146 1wao_1 Serine/threonine protei 90.8 0.43 1.5E-05 34.8 5.2 53 3-55 60-117 (477)
147 3u64_A Protein TP_0956; tetrat 90.8 0.29 1E-05 35.5 4.3 68 3-70 183-265 (301)
148 1ihg_A Cyclophilin 40; ppiase 90.3 0.57 1.9E-05 33.1 5.4 57 3-59 293-354 (370)
149 1zu2_A Mitochondrial import re 90.2 0.75 2.6E-05 30.1 5.6 55 2-56 21-90 (158)
150 1kt0_A FKBP51, 51 kDa FK506-bi 90.2 0.89 3E-05 32.7 6.4 57 3-59 337-398 (457)
151 2yhc_A BAMD, UPF0169 lipoprote 89.3 1.5 5E-05 27.8 6.3 45 3-47 24-76 (225)
152 1qqe_A Vesicular transport pro 88.8 2.4 8.3E-05 28.0 7.4 67 4-70 98-183 (292)
153 1qqe_A Vesicular transport pro 87.3 3.9 0.00013 26.9 7.7 44 4-47 139-193 (292)
154 4g1t_A Interferon-induced prot 86.9 3.5 0.00012 28.2 7.4 26 27-52 228-253 (472)
155 2hr2_A Hypothetical protein; a 86.7 4.8 0.00016 26.1 7.9 66 4-69 32-126 (159)
156 4a1s_A PINS, partner of inscut 86.5 4.1 0.00014 27.1 7.5 68 3-70 68-151 (411)
157 3ro2_A PINS homolog, G-protein 86.4 4.4 0.00015 25.4 7.4 67 3-69 25-107 (338)
158 4a1g_A Mitotic checkpoint seri 86.4 2.2 7.6E-05 27.9 5.9 33 25-58 114-148 (152)
159 3ro2_A PINS homolog, G-protein 86.3 3.4 0.00012 25.9 6.6 19 25-43 236-254 (338)
160 3sf4_A G-protein-signaling mod 84.7 4 0.00014 26.7 6.6 19 25-43 240-258 (406)
161 2wvi_A Mitotic checkpoint seri 84.6 2.9 9.8E-05 27.7 5.9 34 25-59 109-144 (164)
162 3ro3_A PINS homolog, G-protein 83.9 3.9 0.00014 22.7 6.6 45 25-69 62-113 (164)
163 4a1s_A PINS, partner of inscut 82.9 5 0.00017 26.7 6.6 19 25-43 276-294 (411)
164 3sf4_A G-protein-signaling mod 82.9 6.4 0.00022 25.7 7.0 67 4-70 248-332 (406)
165 1dce_A Protein (RAB geranylger 81.3 9.5 0.00033 28.6 8.2 55 4-58 50-119 (567)
166 3bee_A Putative YFRE protein; 81.3 4.9 0.00017 23.1 5.4 42 3-44 29-75 (93)
167 3esl_A Checkpoint serine/threo 79.9 5.1 0.00018 27.4 5.9 41 18-59 116-163 (202)
168 4aez_C MAD3, mitotic spindle c 77.5 6.4 0.00022 27.3 5.8 33 25-58 163-197 (223)
169 2hr2_A Hypothetical protein; a 75.3 6.1 0.00021 25.6 5.0 41 4-44 78-134 (159)
170 2ifu_A Gamma-SNAP; membrane fu 75.0 15 0.00052 24.2 7.4 40 4-43 136-186 (307)
171 3esl_A Checkpoint serine/threo 71.4 8 0.00027 26.4 5.0 66 2-69 11-103 (202)
172 1ouv_A Conserved hypothetical 71.1 17 0.00057 22.9 6.5 31 25-57 19-49 (273)
173 3ulq_A Response regulator aspa 69.8 22 0.00075 23.7 7.7 46 25-70 237-289 (383)
174 1zu2_A Mitochondrial import re 68.8 18 0.0006 23.4 6.1 48 3-50 66-129 (158)
175 2ifu_A Gamma-SNAP; membrane fu 66.6 25 0.00084 23.1 7.3 67 4-70 97-180 (307)
176 3q15_A PSP28, response regulat 65.2 28 0.00096 23.3 7.9 45 25-69 235-285 (378)
177 3dra_A Protein farnesyltransfe 64.8 17 0.00059 25.3 5.7 53 4-56 54-113 (306)
178 4a1g_A Mitotic checkpoint seri 62.0 15 0.00051 23.9 4.7 33 27-59 5-39 (152)
179 3gw4_A Uncharacterized protein 61.4 22 0.00076 20.8 6.2 56 15-70 24-91 (203)
180 3mv2_B Coatomer subunit epsilo 61.3 13 0.00043 26.5 4.5 47 25-71 113-162 (310)
181 3gw4_A Uncharacterized protein 61.1 22 0.00077 20.8 6.4 38 4-41 47-95 (203)
182 2v5f_A Prolyl 4-hydroxylase su 59.1 22 0.00074 20.0 6.7 38 16-53 45-87 (104)
183 1dce_A Protein (RAB geranylger 59.1 27 0.00094 26.1 6.3 48 4-51 94-148 (567)
184 2k85_A Glucocorticoid receptor 58.3 11 0.00036 22.0 3.1 23 20-42 43-66 (69)
185 3dss_A Geranylgeranyl transfer 57.8 35 0.0012 24.2 6.4 46 5-50 132-183 (331)
186 2qfc_A PLCR protein; TPR, HTH, 57.6 35 0.0012 22.0 7.4 46 25-70 168-221 (293)
187 3q7a_A Farnesyltransferase alp 55.2 25 0.00087 25.3 5.3 48 5-52 76-129 (349)
188 3ro3_A PINS homolog, G-protein 55.0 24 0.00082 19.3 7.0 39 4-42 70-119 (164)
189 2rpa_A Katanin P60 ATPase-cont 54.8 9.7 0.00033 22.3 2.6 22 21-42 20-42 (78)
190 3dss_A Geranylgeranyl transfer 53.8 42 0.0014 23.8 6.3 49 4-52 95-150 (331)
191 1hz4_A MALT regulatory protein 53.2 45 0.0015 21.9 8.0 67 4-70 114-199 (373)
192 1xkp_A Putative membrane-bound 50.7 40 0.0014 23.4 5.6 46 2-47 167-220 (246)
193 3u3w_A Transcriptional activat 49.5 22 0.00075 23.0 3.9 45 25-69 168-220 (293)
194 3q7a_A Farnesyltransferase alp 48.9 71 0.0024 22.9 8.3 53 4-57 110-169 (349)
195 1b89_A Protein (clathrin heavy 48.2 33 0.0011 25.8 5.1 37 18-59 149-190 (449)
196 2wvi_A Mitotic checkpoint seri 48.1 55 0.0019 21.3 6.9 51 16-69 65-120 (164)
197 1pc2_A Mitochondria fission pr 47.9 52 0.0018 21.1 6.6 48 2-49 17-74 (152)
198 4g26_A Pentatricopeptide repea 47.9 36 0.0012 25.0 5.3 46 25-70 118-165 (501)
199 4f3v_A ESX-1 secretion system 47.8 30 0.001 24.2 4.6 47 25-71 184-234 (282)
200 1wgx_A KIAA1903 protein; MYB D 46.6 26 0.00089 20.2 3.5 37 4-40 17-58 (73)
201 1ouv_A Conserved hypothetical 46.1 51 0.0018 20.6 5.2 12 28-39 94-105 (273)
202 3bee_A Putative YFRE protein; 46.0 39 0.0013 19.0 6.3 55 16-70 5-68 (93)
203 2oy9_A UPF0223 protein BH2638; 44.4 21 0.00071 22.0 3.0 45 25-73 22-67 (98)
204 4g26_A Pentatricopeptide repea 44.2 53 0.0018 24.1 5.7 47 25-71 153-201 (501)
205 3dra_A Protein farnesyltransfe 44.1 77 0.0026 21.9 8.5 55 4-59 167-232 (306)
206 4f3v_A ESX-1 secretion system 43.2 23 0.0008 24.7 3.5 28 25-52 19-46 (282)
207 3mv2_B Coatomer subunit epsilo 40.9 93 0.0032 21.9 7.6 65 2-69 155-235 (310)
208 3q15_A PSP28, response regulat 38.0 76 0.0026 21.1 5.3 40 4-43 243-292 (378)
209 4aez_C MAD3, mitotic spindle c 36.6 53 0.0018 22.6 4.4 32 28-59 51-85 (223)
210 3ulq_A Response regulator aspa 35.5 88 0.003 20.7 5.3 39 4-42 245-294 (383)
211 1rcw_A CT610, CADD; iron, DI-i 33.4 94 0.0032 19.8 6.3 53 3-55 37-98 (231)
212 2ff4_A Probable regulatory pro 33.4 73 0.0025 22.5 4.8 47 25-71 184-231 (388)
213 2ff4_A Probable regulatory pro 31.7 1E+02 0.0035 21.7 5.4 54 5-58 193-257 (388)
214 3u3w_A Transcriptional activat 31.4 1E+02 0.0036 19.7 6.4 45 25-69 209-261 (293)
215 1hz4_A MALT regulatory protein 31.1 1.1E+02 0.0038 19.9 6.7 18 25-42 106-123 (373)
216 2vj4_A Protein MXIC, MXIC; sec 29.9 94 0.0032 22.1 4.9 46 2-47 120-173 (294)
217 3pp5_A BRK1, protein brick1; t 28.0 78 0.0027 18.4 3.5 34 8-43 34-72 (73)
218 1h3l_A RNA polymerase sigma fa 25.8 83 0.0028 16.8 5.0 37 4-41 12-53 (87)
219 2ygu_A Venom allergen 2; hydro 21.8 1.5E+02 0.0052 18.7 4.2 32 33-66 10-56 (125)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1e-14 Score=113.90 Aligned_cols=69 Identities=9% Similarity=0.139 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcc---hHHHHHHHHHHHhhcc--CcHHHHHHHHHHHhhc-Cc--------c
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CAL---LTRVVEVFEQSMQSAT--YSSDVWFHYCNLASEV-PP--------D 62 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~---~~~a~~V~erav~~~p--~SvdLW~~Yl~f~~~~-~~--------~ 62 (73)
+|.+|+++|..||+++++|++|+ .++ .+++++||+|||..+| +|++||..||.|++.+ +. +
T Consensus 85 aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 85 VYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHH
Confidence 68999999999999999999999 677 9999999999999994 7999999999999876 32 4
Q ss_pred hhhhhhhh
Q 041861 63 GHRKSEYQ 70 (73)
Q Consensus 63 ~~~~lf~~ 70 (73)
.++++|++
T Consensus 165 ~vr~~FEr 172 (679)
T 4e6h_A 165 IVIQAFQV 172 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46678876
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=3.1e-11 Score=87.61 Aligned_cols=68 Identities=16% Similarity=0.318 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhh----hhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRK----SEYQ 70 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~----lf~~ 70 (73)
+|.+|+++|..||.+.++|++|+ .|+.++|+++|+|||...| ++++|..|+.|+... +.+..++ +|++
T Consensus 31 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 31 ARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 57899999999999999999999 7899999999999999999 899999999998765 5555443 5554
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=1.7e-11 Score=91.32 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHccchHHHHHHHHhcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 1 MIRLVYNSFLADFHLCYGYWRKACCALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 1 ~~r~~Y~~fL~~fPl~~~YWkkya~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
.+|++|+++|+.||+ ++.+++++||+|||..+| |++||..||+|.+.. +++.++.+|++
T Consensus 13 ~aR~vyer~l~~~P~----------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS----------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp CHHHHHHHHHHHHHT----------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HHHHHHHHHHHHCCC----------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 379999999999999 899999999999999998 999999999999998 46788888876
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.91 E-value=2.7e-09 Score=83.36 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHH-HHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVV-EVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~-~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
++.+|++-|..+|.....|.+|| .|+.++|. +||+||+.++|.|+.||..|+.+.... +.+++|.++++.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35789999999999999999999 67888996 999999999999999999999999988 999999999864
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=9.4e-08 Score=71.17 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
++.+|++.|..+|.....|.+|| .|+.++|.+||+||+.+ |.|..||..|..+
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 35799999999999999999999 78999999999999999 9998777777666
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.63 E-value=8.2e-08 Score=69.56 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=62.3
Q ss_pred HHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
++++.|.+.|...+-|.+++ .|+.++|+.+|++++..+|.+.++|..|+.+.... +.+.++.+|+|-
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36889999999999999999 68999999999999999999999999999999888 999999999873
No 7
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.50 E-value=2.1e-07 Score=63.05 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=51.1
Q ss_pred ccchHHHHHHHH-----hcch------HHHHHHHHHHHhhccCcHH--------HHHHHHHHHhhcCcchhhhhhhh
Q 041861 13 FHLCYGYWRKAC-----CALL------TRVVEVFEQSMQSATYSSD--------VWFHYCNLASEVPPDGHRKSEYQ 70 (73)
Q Consensus 13 fPl~~~YWkkya-----~~~~------~~a~~V~erav~~~p~Svd--------LW~~Yl~f~~~~~~~~~~~lf~~ 70 (73)
-|..|+-|-.|+ .|++ ++.+++|+||+.++|++.. ||+.|+.|....|+|+.|++|..
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 488899999999 4888 9999999999999999744 99999999766699999999875
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.46 E-value=8.3e-07 Score=60.30 Aligned_cols=69 Identities=10% Similarity=0.184 Sum_probs=60.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH---h---------cch-------HHHHHHHHHHHhh-ccCcHHHHHHHHHHHhhc-Cc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC---C---------ALL-------TRVVEVFEQSMQS-ATYSSDVWFHYCNLASEV-PP 61 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya---~---------~~~-------~~a~~V~erav~~-~p~SvdLW~~Yl~f~~~~-~~ 61 (73)
...|++.|...|.....|..|+ . |+. ++|+++|+||+.. -|.+.++|..|..+.... +.
T Consensus 36 ~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 36 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 3689999999999999999999 2 565 8999999999995 688999999999999887 88
Q ss_pred chhhhhhhhh
Q 041861 62 DGHRKSEYQE 71 (73)
Q Consensus 62 ~~~~~lf~~~ 71 (73)
++++.+|++-
T Consensus 116 ~~A~~~~~~a 125 (308)
T 2ond_A 116 EKVHSIYNRL 125 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 9
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=9.7e-07 Score=59.95 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhh--cc--CcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQS--AT--YSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~--~p--~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.+..|++.|..+|-....|..|+ .|+.++|+.+|+||+.. +| .+.++|..|+.|.... +.+++..++.|
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788999999999999999988 68899999999999985 34 3788999999998877 77888777665
No 10
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.60 E-value=0.00011 Score=49.67 Aligned_cols=69 Identities=7% Similarity=0.018 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHccch-HHHHHHHH-----------hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 2 IRLVYNSFLADFHLC-YGYWRKAC-----------CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~-~~YWkkya-----------~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
+|.+|++-.+.-|.- ..+|++|+ ++|.++|+++|..|+..-..=--+|+.|++|.++. +....|+|.
T Consensus 38 lrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 38 LIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp HHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 578999999999873 56777777 78999999999999873111256999999999998 888888875
Q ss_pred hh
Q 041861 69 YQ 70 (73)
Q Consensus 69 ~~ 70 (73)
.+
T Consensus 118 g~ 119 (161)
T 4h7y_A 118 QK 119 (161)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.00092 Score=37.04 Aligned_cols=68 Identities=3% Similarity=-0.152 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|.+.+++++..-|.+.+.|.......... +.++....+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 24 LQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578889999999999999888 79999999999999999999999998887776666 77777776654
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.55 E-value=0.00072 Score=40.75 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|....+|...+ .|+.++|++.|++++.--|.+.+.|.+........ +.++....+++
T Consensus 38 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999988 89999999999999999999999998877666655 77777666654
No 13
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.52 E-value=0.00062 Score=43.16 Aligned_cols=68 Identities=6% Similarity=0.023 Sum_probs=60.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-...+|...+ .|..++|++.|++++.--|.+.+.|.+........ +.++....|++
T Consensus 56 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 56 EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4679999999999999999988 89999999999999999999999999887777766 77777777665
No 14
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.0008 Score=38.81 Aligned_cols=68 Identities=9% Similarity=-0.055 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999988 79999999999999999999999998877666655 77777776654
No 15
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.41 E-value=0.0018 Score=37.54 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.+.....+++
T Consensus 29 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 29 AACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578999999999999999998 79999999999999999999999998887776665 66666665554
No 16
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.41 E-value=0.0021 Score=35.71 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 29 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4578888999998888888888 78999999999999998898899888777666555 77777666654
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.38 E-value=0.0011 Score=39.65 Aligned_cols=68 Identities=7% Similarity=-0.061 Sum_probs=57.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++.--|.+.+.|.......... +.++....+++
T Consensus 37 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 37 ALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999998 89999999999999999999999998776665555 66666666554
No 18
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.37 E-value=0.0015 Score=37.15 Aligned_cols=68 Identities=4% Similarity=-0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .++.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 36 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 36 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3568888888998888888888 78899999999999998898888888877766655 77777666654
No 19
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.36 E-value=0.0026 Score=35.66 Aligned_cols=68 Identities=9% Similarity=-0.092 Sum_probs=52.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.+++++..-|.+.+.|.......... +.+.....+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 32 VHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567888888888888888877 78899999999999988888888888777666555 66666666554
No 20
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0028 Score=36.80 Aligned_cols=68 Identities=3% Similarity=-0.040 Sum_probs=57.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ +|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 24 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 24 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4578899999999999999988 89999999999999999999999998877766655 66666665554
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.29 E-value=0.0021 Score=39.65 Aligned_cols=68 Identities=6% Similarity=0.024 Sum_probs=55.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-...+|...+ .|+.++|++.|++++.--|.+.+.|.+........ +.++....|++
T Consensus 41 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 41 HXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3578899999999999999888 79999999999999998899999988776665555 66666666554
No 22
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.29 E-value=0.0036 Score=34.91 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|++.+...|-....|...+ .|+.++|.+.+++++..-|.+.+.|.......... +.++....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 23 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34445555555544554444 44555555555555555555555554444433333 444444333
No 23
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.29 E-value=0.0044 Score=33.96 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccC--cHHHHHHHHHHHhhc--Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATY--SSDVWFHYCNLASEV--PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~--SvdLW~~Yl~f~~~~--~~~~~~~lf~~ 70 (73)
...|++.+...|-....|..++ .|+.++|++.|++++..-|. ..+.|.......... +.++..+.+.+
T Consensus 26 ~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 26 IDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4578899999999999999888 79999999999999999999 899998877665543 55666555544
No 24
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.27 E-value=0.0027 Score=38.66 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=57.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 31 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 31 IDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4578999999999999999988 79999999999999999999999998877776666 77776666554
No 25
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.27 E-value=0.0038 Score=34.79 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|.+.+++++...|.+.+.|.......... +.++....+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 55 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4568888889998888888888 78999999999999999999999998887776666 77777777665
No 26
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.26 E-value=0.0029 Score=38.81 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
...|++.|...|-....|...+ .|+.++|++.|+++++--|.+.+.|.+........
T Consensus 51 ~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 51 KKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4678999999999999999999 89999999999999999999999999988766655
No 27
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.23 E-value=0.0036 Score=36.93 Aligned_cols=66 Identities=3% Similarity=-0.081 Sum_probs=37.2
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....++
T Consensus 34 ~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 34 KFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345556666666666666555 45666666666666666666666665555444433 4444444443
No 28
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.22 E-value=0.0034 Score=38.35 Aligned_cols=67 Identities=6% Similarity=0.003 Sum_probs=53.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH-Hhhc-Cc--chhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL-ASEV-PP--DGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f-~~~~-~~--~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|..+... .... +. +.....+++
T Consensus 31 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 31 QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 567888899999999998888 7889999999999999889889999888776 4333 54 666666554
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.18 E-value=0.0042 Score=37.34 Aligned_cols=68 Identities=4% Similarity=-0.061 Sum_probs=57.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
-..|++.|...|-....|...+ +|+.++|++.|++++.--|.+.+.|.......... +.++....|++
T Consensus 33 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 33 MRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3578999999999999999988 89999999999999998899999998877766665 77777766654
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.15 E-value=0.0044 Score=37.86 Aligned_cols=68 Identities=9% Similarity=-0.087 Sum_probs=55.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...+++.+...|-....|...+ .|+.++|++.|+++++.-|.+.+.|.+........ +.++....|++
T Consensus 93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 93 IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567788888899888888888 78999999999999998899999998877666655 77777776654
No 31
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.14 E-value=0.0018 Score=37.73 Aligned_cols=68 Identities=6% Similarity=-0.030 Sum_probs=52.5
Q ss_pred HHHHHHHHHH---ccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLAD---FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~---fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.|.. -|-....|...+ .|+.++|++.|++++..-|.+.+.+..+....... +.++....+++
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567788887 588888888888 78899999999999998898888888877666555 66666665543
No 32
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.13 E-value=0.0052 Score=36.27 Aligned_cols=64 Identities=3% Similarity=-0.046 Sum_probs=31.4
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|++.+...|-....|...+ .|+.++|++.+++++...|.+.+.|.......... +.++....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44445555555555554444 45555555555555555555555554444433333 444444433
No 33
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.11 E-value=0.0056 Score=35.06 Aligned_cols=68 Identities=7% Similarity=-0.087 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccchH---HHHHHHH-----hcchHHHHHHHHHHHhhccCc---HHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCY---GYWRKAC-----CALLTRVVEVFEQSMQSATYS---SDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~---~YWkkya-----~~~~~~a~~V~erav~~~p~S---vdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++++..+|-.. ..|...+ .|+.++|++.|++++...|.+ .+.+.......... +.++....+++
T Consensus 22 ~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 22 SQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457888999888766 6777666 789999999999999988888 67676655544444 77777666654
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.05 E-value=0.0071 Score=35.67 Aligned_cols=68 Identities=12% Similarity=-0.071 Sum_probs=52.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...+++.+...|-....|...+ .|+.++|.+.+++++...|.+.+.|.......... +.++....+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3567788888888888888777 68888888888888888888888887776665555 66766666654
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.98 E-value=0.0054 Score=41.73 Aligned_cols=68 Identities=6% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Cc-chhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PP-DGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~-~~~~~lf~~ 70 (73)
...|++.+..+|-....|...+ +|..++|++.|++++..-|...+.|.+........ +. +.+.+++++
T Consensus 186 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4678899999999888888777 89999999999999999999999999988766666 44 345666654
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0053 Score=35.52 Aligned_cols=68 Identities=6% Similarity=-0.078 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-. ...|...+ .++.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 48 LAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677777778875 67777777 78888888888888888888888887766655544 66666555544
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.97 E-value=0.0073 Score=33.85 Aligned_cols=68 Identities=7% Similarity=-0.066 Sum_probs=54.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc-------HHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS-------SDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S-------vdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-....|...+ .|+.++|++.|++++...|.+ .+.|.......... +.+.....++
T Consensus 24 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 103 (131)
T 1elr_A 24 LKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3568888999999999998888 799999999999999988876 77777766655555 7777766665
Q ss_pred h
Q 041861 70 Q 70 (73)
Q Consensus 70 ~ 70 (73)
+
T Consensus 104 ~ 104 (131)
T 1elr_A 104 K 104 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.96 E-value=0.0064 Score=38.60 Aligned_cols=68 Identities=7% Similarity=-0.115 Sum_probs=49.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 63 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 63 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3467777778888777777777 67788888888888887777777777776665555 66666665554
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.90 E-value=0.01 Score=36.96 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHHHhhccCcHHHHH
Q 041861 26 ALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 26 ~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
|+.++|++.+++++...|.+.+.|.
T Consensus 139 ~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHH
Confidence 3344444444444443333333333
No 40
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.86 E-value=0.0083 Score=40.22 Aligned_cols=68 Identities=3% Similarity=-0.073 Sum_probs=59.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 85 ILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 4678999999999999999988 79999999999999999999999999888877666 88877777765
No 41
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.85 E-value=0.0088 Score=40.07 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=35.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.+........ +.++....++
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555555555555555555 45566666666666665555555555554444433 5555544444
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.84 E-value=0.012 Score=36.55 Aligned_cols=68 Identities=4% Similarity=-0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.......... +.++....+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4578888999998888888887 79999999999999999999999998887777666 78877777665
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.83 E-value=0.0081 Score=38.38 Aligned_cols=44 Identities=7% Similarity=-0.009 Sum_probs=22.5
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|+.++|++.|++++..-|.+.+.|.......... +.++....|
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555555555555555555555544443333 444444333
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.81 E-value=0.012 Score=37.22 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=40.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.......... +.++....+++
T Consensus 58 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 58 VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456666666666666666655 56666666666666666666666666655554444 55555555544
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.76 E-value=0.0092 Score=38.36 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=50.5
Q ss_pred HHHHHHHHHccchHHHHHHHH-----h-----------cchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----C-----------ALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~-----------~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
..|++.++..|-....|...+ . |+.++|++.|++++.--|.+.+.|.......... +.++...
T Consensus 60 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 60 ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 467788888888888887777 5 7888888888888888888888887776666555 6666666
Q ss_pred hhhh
Q 041861 67 SEYQ 70 (73)
Q Consensus 67 lf~~ 70 (73)
.+++
T Consensus 140 ~~~~ 143 (217)
T 2pl2_A 140 SLKQ 143 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.017 Score=35.95 Aligned_cols=66 Identities=3% Similarity=-0.030 Sum_probs=41.1
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....++
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456666666666666666666 56677777777777776666666666655544444 5555555444
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.60 E-value=0.02 Score=34.93 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=5.9
Q ss_pred cchHHHHHHHHHHHh
Q 041861 26 ALLTRVVEVFEQSMQ 40 (73)
Q Consensus 26 ~~~~~a~~V~erav~ 40 (73)
|+.++|++.|++++.
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 91 NRPAESMAYFDKALA 105 (225)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHc
Confidence 333333333333333
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.59 E-value=0.024 Score=34.47 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=48.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.|...|-....|...+ .|+.++|++.+++++...|.+.+.|.......... +.+.....+.
T Consensus 25 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 25 IRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567888888888888888877 67888888888888888887777777765555544 5444444433
No 49
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.56 E-value=0.021 Score=36.84 Aligned_cols=68 Identities=7% Similarity=-0.057 Sum_probs=56.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 41 ALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4578899999999999998888 79999999999999999999999998877766655 77777766654
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.56 E-value=0.021 Score=36.84 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444555555555554444 45555555555555555555555554444433333 444444433
No 51
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.54 E-value=0.019 Score=37.32 Aligned_cols=68 Identities=4% Similarity=-0.082 Sum_probs=56.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 23 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 23 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4578889999999999998888 89999999999999998898889888877766655 77777666654
No 52
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.53 E-value=0.018 Score=37.39 Aligned_cols=68 Identities=3% Similarity=-0.028 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.+++++...|.+.+.|.......... +.++....+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888889998888888888 78999999999999998899999888877766655 66666665554
No 53
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.53 E-value=0.022 Score=31.50 Aligned_cols=48 Identities=6% Similarity=0.004 Sum_probs=43.0
Q ss_pred HHHHHHHHHHccchHH-HHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHH
Q 041861 3 RLVYNSFLADFHLCYG-YWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~-YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
...|++.+...|-... .|...+ .|+.++|++.|++++..-|.+.+.|.
T Consensus 20 ~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 20 LQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4678999999999988 888888 89999999999999999999998883
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.49 E-value=0.021 Score=33.51 Aligned_cols=67 Identities=4% Similarity=-0.075 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH--Hhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL--ASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f--~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|..+... .... +.++....++
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4578899999999999999888 8999999999999999999999988654433 2222 4444444443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.49 E-value=0.017 Score=35.23 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=22.4
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhcc-CcHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSAT-YSSDVW 49 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p-~SvdLW 49 (73)
.|++.+...|-....|...+ .|+.++|.+.+++++...| .+.+.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 185 (225)
T 2vq2_A 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185 (225)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444555554444444444 4555555555555555555 444444
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.48 E-value=0.021 Score=36.02 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=34.5
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHh--hccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQ--SATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~--~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|..++ .|+.++|++.|++++. ..|...+.|.......... +.++....++
T Consensus 92 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 92 EEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555555555555 4556666666666655 4455555555544443333 4444444443
No 57
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.46 E-value=0.025 Score=34.33 Aligned_cols=68 Identities=6% Similarity=-0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH------hcch--HHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC------CALL--TRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya------~~~~--~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|..++ .|+. ++|++.|++++..-|.+.+.|.......... +.+.....+++
T Consensus 64 ~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4578888999998888888877 4666 9999999999998899889888776655544 66666555543
No 58
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.45 E-value=0.02 Score=37.91 Aligned_cols=68 Identities=3% Similarity=-0.041 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 84 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4578899999999999998888 79999999999999999999999998887776666 77777776654
No 59
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.025 Score=38.27 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=33.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.+........ +.++....++
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555555555444 45555555555555555555555555544444333 4444444443
No 60
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.025 Score=36.53 Aligned_cols=66 Identities=12% Similarity=-0.119 Sum_probs=36.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.......... +.++....++
T Consensus 146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345555555555555555444 55666666666666666666666666555554444 4444444443
No 61
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.37 E-value=0.032 Score=30.49 Aligned_cols=53 Identities=4% Similarity=-0.117 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
...+++.+...|-....|...+ .|+.++|.+.|++++..-|.+.+.|......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 58 YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3578889999999888898888 8999999999999999999999988775543
No 62
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.37 E-value=0.035 Score=30.80 Aligned_cols=55 Identities=2% Similarity=-0.162 Sum_probs=47.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4578889999999999998888 899999999999999999999998887665443
No 63
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.025 Score=38.27 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|...+.|.+....
T Consensus 122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345555555555555555554 4555555555555555555555555544433
No 64
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.33 E-value=0.028 Score=37.18 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=37.6
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc-----------HHHHHHHHHHHhhc-Ccchhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS-----------SDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S-----------vdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+ .+.|.......... +.+....
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 445566666666555555555 566666666666666655555 56666655554444 5555544
Q ss_pred hh
Q 041861 67 SE 68 (73)
Q Consensus 67 lf 68 (73)
+.
T Consensus 352 ~~ 353 (368)
T 1fch_A 352 AD 353 (368)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.027 Score=35.07 Aligned_cols=67 Identities=4% Similarity=-0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345666668888888888888 79999999999999999999999998877766655 77777766654
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.32 E-value=0.03 Score=38.21 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=53.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....|++
T Consensus 46 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 46 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567888888888888888877 78888888888888888888888888777666655 77777666654
No 67
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.30 E-value=0.018 Score=32.91 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=34.6
Q ss_pred ccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 13 FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 13 fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|-....|...+ .|+.++|++.|++++..-|...+.|.......... +.++....+++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355555566665 56777777777777776677777666655554444 55555554443
No 68
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.27 E-value=0.024 Score=36.59 Aligned_cols=64 Identities=6% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHHHHHHHccchHHHHHHHH-----hc-chHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CA-LLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~-~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.+++.+...|-....|...+ .| ..++|++.|++++..-|...+.|.......... +.++....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 78 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34445555555555554444 34 455555555555555555555555444433333 444444333
No 69
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.27 E-value=0.047 Score=29.11 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
.|++.+...|-....|...+ .|+.++|++.|++++..-|...+.|.+
T Consensus 31 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 31 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44555555555555555554 455555555555555555555554443
No 70
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.26 E-value=0.014 Score=35.77 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=54.4
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|++.+..-|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57778888888888888888 79999999999999999999999998877665555 66666666554
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.26 E-value=0.03 Score=37.67 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=57.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-...+|...+ +|+.++|++.|++++..-|.+...|.......... +.++....+.+
T Consensus 24 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 24 AACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999988 89999999999999999999999998877666555 66666666554
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.18 E-value=0.045 Score=34.45 Aligned_cols=45 Identities=0% Similarity=-0.049 Sum_probs=31.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDV 48 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdL 48 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.++
T Consensus 63 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 63 DYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 456667777777777777776 677777777777777777776644
No 73
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.026 Score=31.17 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=36.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS 45 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S 45 (73)
...|++.+...|-....|...+ +|+.++|++.|++++..-|.+
T Consensus 24 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 24 VHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3568888888998888888888 788999999999999888876
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.15 E-value=0.0072 Score=36.21 Aligned_cols=66 Identities=5% Similarity=-0.086 Sum_probs=50.8
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
+|++.+..-|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45556666777777777777 79999999999999999999999999877766655 77776666654
No 75
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.13 E-value=0.043 Score=30.82 Aligned_cols=54 Identities=6% Similarity=0.002 Sum_probs=46.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLA 56 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~ 56 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4578889999999999999988 79999999999999999998888887655443
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.10 E-value=0.04 Score=33.91 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc--HHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS--SDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S--vdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-....|..++ .|+.++|++.|++++..-|.. .+.|.......... +.++....+.
T Consensus 94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3568888999999999999888 799999999999999988865 44787776655554 6665555444
No 77
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.10 E-value=0.035 Score=29.63 Aligned_cols=55 Identities=9% Similarity=0.184 Sum_probs=43.7
Q ss_pred hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 16 CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 16 ~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
....|...+ .++.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566655 79999999999999999999999998887766666 77777776654
No 78
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.10 E-value=0.035 Score=39.38 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=36.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..+++.+...|-....|...+ .|+.++|+++|++++..-|.+++.|.......... +.++..++|++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555555555554 55666666666666665555566666555444444 55555555543
No 79
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.10 E-value=0.031 Score=38.90 Aligned_cols=67 Identities=7% Similarity=-0.095 Sum_probs=39.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.......... +.++....+++
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445566666666666666555 56666666666666666666666666665555544 55555554443
No 80
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.07 E-value=0.03 Score=38.23 Aligned_cols=68 Identities=3% Similarity=-0.033 Sum_probs=52.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-....|...+ .|+.++|+++|++++..-|.+.+.|.......... +.++....+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567788888888888887777 78888888888888888888888888777666655 66666666654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.03 E-value=0.062 Score=33.78 Aligned_cols=68 Identities=4% Similarity=-0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcc-chHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFH-LCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fP-l~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...| -....|...+ .|+.++|++.|++++..-|...+.|.......... +.++....+++
T Consensus 27 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 27 FEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 357888999888 6666666666 89999999999999999999999999887776666 77766666554
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.99 E-value=0.03 Score=35.54 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=43.2
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHH-HHHhhcCcchhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYC-NLASEVPPDGHRKSE 68 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl-~f~~~~~~~~~~~lf 68 (73)
..|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.... ......+.++....+
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777 67788888888888777777777776655 332222444444433
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.98 E-value=0.044 Score=34.88 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
...|++.|+..|-....|...+ .|+.++|++.|++++.--|.+.+.|.+....
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4679999999999999999999 8999999999999999999999999876544
No 84
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.06 Score=30.88 Aligned_cols=54 Identities=6% Similarity=-0.132 Sum_probs=46.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLA 56 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~ 56 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.++|.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 85 ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4578889999999888888888 89999999999999999999999998765543
No 85
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.94 E-value=0.066 Score=32.99 Aligned_cols=68 Identities=1% Similarity=-0.069 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH----------------HHHHHHHHHHhhc-C
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS----------------DVWFHYCNLASEV-P 60 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv----------------dLW~~Yl~f~~~~-~ 60 (73)
...|++.+...|-....|...+ .|+.++|++.|++++...|.+. +.|.+........ +
T Consensus 57 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 57 EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 3567788888888888888877 7888888888888888666443 6666555444433 5
Q ss_pred cchhhhhhhh
Q 041861 61 PDGHRKSEYQ 70 (73)
Q Consensus 61 ~~~~~~lf~~ 70 (73)
.++....+++
T Consensus 137 ~~~A~~~~~~ 146 (213)
T 1hh8_A 137 WKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 86
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.89 E-value=0.065 Score=34.29 Aligned_cols=65 Identities=6% Similarity=-0.121 Sum_probs=40.2
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+...|-....|...+ .|..++|++.|++++.-- .+.+.|.+........ +.++....++
T Consensus 105 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456777777777777777666 566777777777777654 5666666655544443 4444444443
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.88 E-value=0.037 Score=40.23 Aligned_cols=64 Identities=6% Similarity=-0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSE 68 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf 68 (73)
.|++.+...|-....|..++ .|+.++|++.|+++++.-|.+.+.|.+........ +.++....+
T Consensus 45 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 114 (568)
T 2vsy_A 45 AVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114 (568)
T ss_dssp HHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44445555555555555444 45555555555555555555555555444433333 444443333
No 88
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.87 E-value=0.052 Score=38.96 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcc-hHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CAL-LTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~-~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.|...|-....|...+ +|. .++|++.|++++.--|.+.+.|.+--...... +.++....+++
T Consensus 118 ~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 567888888888888888777 674 88888888888888888888888766655544 55555555543
No 89
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.80 E-value=0.048 Score=38.68 Aligned_cols=67 Identities=1% Similarity=-0.174 Sum_probs=37.2
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|+++|++++...|.+.+.|.......... +.++..++|++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555666666555665555 55666666666666665555555555544433333 55555554443
No 90
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.046 Score=30.14 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=38.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++++..-|.+.+.|.+........ +.++....+++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 79999999999999999999999999887766655 66666665554
No 91
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.74 E-value=0.018 Score=31.35 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=39.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 78999999999999999999999999888777666 77777776654
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.70 E-value=0.057 Score=42.22 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.|+..|-....|...+ +|..++|++.|++|++--|...+.|.+........ +.++..+.+++
T Consensus 30 ~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~k 102 (723)
T 4gyw_A 30 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666666666666666666 56666666666666666666666666655555544 55555554443
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.68 E-value=0.023 Score=34.66 Aligned_cols=65 Identities=3% Similarity=-0.267 Sum_probs=48.8
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
|++-+..-|-....|...+ .|+.++|++.|++++.--|.+.+.|.......... +.++....|++
T Consensus 20 ~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 20 VQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3344444454455555555 79999999999999999999999999887777666 77777776654
No 94
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.66 E-value=0.05 Score=31.33 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVW 49 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW 49 (73)
...|++.+..+|-....|..++ .|+.++|++.|++++...|.+.++.
T Consensus 47 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 47 EAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4578999999999999999988 8999999999999999999887765
No 95
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.092 Score=36.08 Aligned_cols=67 Identities=13% Similarity=0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...| ....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....|++
T Consensus 26 ~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 26 IKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467899999999 577787777 89999999999999999999999998877766666 77777766654
No 96
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.63 E-value=0.064 Score=37.30 Aligned_cols=67 Identities=7% Similarity=-0.040 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.+...|-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....|+
T Consensus 45 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 45 IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4679999999999999999988 89999999999999999999999998877776655 7776666553
No 97
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.55 E-value=0.091 Score=32.66 Aligned_cols=47 Identities=13% Similarity=-0.025 Sum_probs=21.3
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
|++.+...|-....|...+ +|+.++|++.|++++.--|.+.++|...
T Consensus 111 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3444444444444444444 4444444444444444444444444433
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.54 E-value=0.1 Score=36.08 Aligned_cols=38 Identities=3% Similarity=-0.018 Sum_probs=18.7
Q ss_pred HHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 18 GYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
..|...+ +|+.++|++.|++++..-|.+.+.|......
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4444444 4555555555555555555555544444333
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.47 E-value=0.016 Score=36.51 Aligned_cols=65 Identities=6% Similarity=-0.177 Sum_probs=50.8
Q ss_pred HHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 6 YNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 6 Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
+++.|...|-...-|...+ .|..++|++.|++++..-|.+.+.|.+-....... +.++....|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3445566677777888777 79999999999999999999999999876665555 66666666554
No 100
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.46 E-value=0.16 Score=30.50 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=32.7
Q ss_pred ccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 13 FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 13 fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
-|.....|...+ +|+.++|++.+++++.--|.+...|.......... +.++...
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 555566666666 67777777777777776677666666554444333 4444333
No 101
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.42 E-value=0.079 Score=30.02 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
...|++.+..+|-. ...+...+ .|+.++|++.|++++...|.+...+..
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 59 EAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 46789999999987 66677776 899999999999999999988776543
No 102
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.40 E-value=0.076 Score=38.38 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=50.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----h--------cchHHHHHHHHHHHhhcc---CcHHHHHHHHHHHhhc-Ccchhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----C--------ALLTRVVEVFEQSMQSAT---YSSDVWFHYCNLASEV-PPDGHR 65 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~--------~~~~~a~~V~erav~~~p---~SvdLW~~Yl~f~~~~-~~~~~~ 65 (73)
...|++.+...|-....|..++ . |+.++|++.|++++..-| ...+.|.+........ +.++..
T Consensus 199 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 3567778888888888888777 4 778888888888888777 7788887777666655 666666
Q ss_pred hhhhh
Q 041861 66 KSEYQ 70 (73)
Q Consensus 66 ~lf~~ 70 (73)
..+++
T Consensus 279 ~~~~~ 283 (474)
T 4abn_A 279 EGFSQ 283 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.36 E-value=0.047 Score=39.65 Aligned_cols=68 Identities=6% Similarity=-0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.++..|-....|...+ .|+.++|++.|+++++.-|.+.+.|.+........ +.++....+++
T Consensus 9 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3568888999999999999988 79999999999999999999999999888777666 77777776654
No 104
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.35 E-value=0.09 Score=30.08 Aligned_cols=57 Identities=2% Similarity=-0.041 Sum_probs=44.6
Q ss_pred cchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 14 HLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 14 Pl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
|.....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.+.....+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34445566666 79999999999999999999999999888776665 66666665554
No 105
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.14 Score=29.36 Aligned_cols=52 Identities=6% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhc------cCcHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSA------TYSSDVWFHYCN 54 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~------p~SvdLW~~Yl~ 54 (73)
...|++.+...|-....|...+ +|+.++|++.|++++.-- |.+.+++.....
T Consensus 58 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 4578999999999999999998 899999999999999988 887777765443
No 106
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.33 E-value=0.094 Score=33.05 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=53.4
Q ss_pred HHHHHHHHHc----cchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADF----HLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~f----Pl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+... |-....|...+ .|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 26 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4677777763 55667777777 79999999999999999999999999887776666 77777776654
No 107
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.08 Score=36.39 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=44.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|++.+...|-....|...+ .|+.++|++.|++++...|.+.+.|.......... +.++....+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456667777777666676666 67777777777777777777777777666555544 55655555543
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.31 E-value=0.091 Score=31.27 Aligned_cols=51 Identities=4% Similarity=-0.078 Sum_probs=45.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYC 53 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl 53 (73)
...|++.|..-|-....|...+ +|+.++|++.|+++++--|.+.+.+...-
T Consensus 67 ~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 3578899999999999999998 89999999999999999999999887654
No 109
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.31 E-value=0.097 Score=38.23 Aligned_cols=68 Identities=3% Similarity=-0.090 Sum_probs=50.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.++..|-....|...+ .|+.++|++.|++|++.-|.+.+.|.+........ +.+++...+++
T Consensus 26 ~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 26 IKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888888888888888888 78888888888888888888888887766555444 66666555544
No 110
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.26 E-value=0.16 Score=27.72 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCN 54 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~ 54 (73)
...|++.+...|-....|...+ .|+.++|.+.|++++..-|.+.+.+.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3568888999998888888888 799999999999999998988887766443
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.24 E-value=0.1 Score=40.80 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=24.8
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLA 56 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~ 56 (73)
.|++.|+..|-....|...+ +|+.++|++.|++|++--|.+.+.|.+.....
T Consensus 65 ~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44444555555555554444 44444444445544444444444444443333
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.97 E-value=0.07 Score=32.21 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=43.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
...|++.+...|-....|...+ +|+.++|++.|++++.--|...+.|..
T Consensus 65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4578999999999999999998 899999999999999999998886644
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.94 E-value=0.069 Score=33.85 Aligned_cols=37 Identities=14% Similarity=0.007 Sum_probs=19.8
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQ 40 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~ 40 (73)
..|++.+...|-....|...+ .|+.++|++.|++++.
T Consensus 24 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 24 EVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp HHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555555555555555544 4555555555555555
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.74 E-value=0.21 Score=30.99 Aligned_cols=54 Identities=2% Similarity=-0.026 Sum_probs=42.2
Q ss_pred HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 17 YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 17 ~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|...+ .|+.++|++.+++++..-|.+.+.|.......... +.+.....|++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45566666 89999999999999999999999888777665555 66766666654
No 115
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.72 E-value=0.12 Score=36.97 Aligned_cols=47 Identities=11% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
.|++.|...|-.+..|...+ +|+.++|++.|++++.--|.+.+.|.+
T Consensus 154 ~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~ 205 (382)
T 2h6f_A 154 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence 45555555565555555555 455555555555555555555555544
No 116
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.63 E-value=0.17 Score=28.00 Aligned_cols=46 Identities=4% Similarity=-0.065 Sum_probs=37.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++++...|.+.+.|.......... +.++....+++
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 78999999999999999999999998877766555 77776666554
No 117
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.60 E-value=0.14 Score=30.14 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=37.9
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++++..-|.+.+.|.......... +.++....+++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999999999999999999999877666655 66666665554
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.58 E-value=0.26 Score=32.93 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=50.9
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc--HHHHHHHHHHHhhc-Ccchhhh
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS--SDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S--vdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
..|++.+...|-....|..++ .|+.++|++.|+++++.-|.. .+.|.+........ +.+....
T Consensus 206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 467888999999999999998 789999999999999988877 77888887777766 4444433
No 119
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.51 E-value=0.061 Score=30.55 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
...|++.+...|-....|...+ +|+.++|++.|++++.-.|..-+
T Consensus 27 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 27 LALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4678999999999999999999 89999999999999987664433
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.42 E-value=0.16 Score=38.60 Aligned_cols=66 Identities=6% Similarity=-0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
...|++.++..|-....|...+ .|+.++|++.|+++++.-|.+.+.|.+........ +.++ ...++
T Consensus 453 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 453 TRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 3568888888888888888777 78899999999999988888888888776655544 5555 44443
No 121
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.37 E-value=0.11 Score=28.49 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=37.4
Q ss_pred hcchHHHHHHHHHHHhhccCcHH-HHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSD-VWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~Svd-LW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++++..-|.+.+ .|.......... +.++....|++
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78999999999999999999999 988876665555 67776666654
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.28 E-value=0.16 Score=30.01 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS 46 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv 46 (73)
...|++-|...|-....|...+ +|+.++|++.|++|+.--|.+.
T Consensus 28 ~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 28 HVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 3578899999999999999888 8999999999999998666544
No 123
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.27 E-value=0.23 Score=30.96 Aligned_cols=67 Identities=3% Similarity=-0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHc--------cchHHHHHHHH-----hcchHHHHHHHHHHHhh--------ccCcHHHHHHHHHHHhhc-Cc
Q 041861 4 LVYNSFLADF--------HLCYGYWRKAC-----CALLTRVVEVFEQSMQS--------ATYSSDVWFHYCNLASEV-PP 61 (73)
Q Consensus 4 ~~Y~~fL~~f--------Pl~~~YWkkya-----~~~~~~a~~V~erav~~--------~p~SvdLW~~Yl~f~~~~-~~ 61 (73)
..|++.+..+ |.....+...+ .|+.++|++.|++++.. -|.....+.......... +.
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 4566777664 88888888888 79999999999999997 565667777766666555 77
Q ss_pred chhhhhhhh
Q 041861 62 DGHRKSEYQ 70 (73)
Q Consensus 62 ~~~~~lf~~ 70 (73)
++....+++
T Consensus 186 ~~A~~~~~~ 194 (283)
T 3edt_B 186 QDAETLYKE 194 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.25 E-value=0.24 Score=34.13 Aligned_cols=57 Identities=7% Similarity=-0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
...|++.|...|-....|...+ +|+.++|++.|++++.--|.+.+.|..........
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988 89999999999999999999999888766555444
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.22 E-value=0.26 Score=31.35 Aligned_cols=68 Identities=9% Similarity=-0.057 Sum_probs=49.3
Q ss_pred HHHHHHHHHHccchHHHHH-----------------HHH-----hcchHHHHHHHHHHHhhccCcH---HHHHHHHHHHh
Q 041861 3 RLVYNSFLADFHLCYGYWR-----------------KAC-----CALLTRVVEVFEQSMQSATYSS---DVWFHYCNLAS 57 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWk-----------------kya-----~~~~~~a~~V~erav~~~p~Sv---dLW~~Yl~f~~ 57 (73)
...|++++..||-....|. ..+ .|+.++|+..|++++...|.+. +.|..-.....
T Consensus 116 ~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 116 FSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence 3578999999998766553 122 7899999999999999999875 45655444444
Q ss_pred hc-Ccchhhhhhhh
Q 041861 58 EV-PPDGHRKSEYQ 70 (73)
Q Consensus 58 ~~-~~~~~~~lf~~ 70 (73)
.. +.++....+++
T Consensus 196 ~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 196 QMQMNAQAEKVAKI 209 (225)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHH
Confidence 44 77777776665
No 126
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.20 E-value=0.32 Score=35.08 Aligned_cols=66 Identities=6% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHccch---------------HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccc
Q 041861 4 LVYNSFLADFHLC---------------YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPD 62 (73)
Q Consensus 4 ~~Y~~fL~~fPl~---------------~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~ 62 (73)
..|++.|...|.. ...|...+ +++.++|++.|++++..-|.+...|.......... +.+
T Consensus 289 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~ 368 (457)
T 1kt0_A 289 IQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 368 (457)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHH
Confidence 4566666666665 45565555 66777777777777776666666666555444443 444
Q ss_pred hhhhhhh
Q 041861 63 GHRKSEY 69 (73)
Q Consensus 63 ~~~~lf~ 69 (73)
++...|+
T Consensus 369 ~A~~~~~ 375 (457)
T 1kt0_A 369 SAKGDFE 375 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 127
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.18 E-value=0.34 Score=32.68 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=51.7
Q ss_pred HHHHHHHHHHccchH-----HHHHHHH--hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 3 RLVYNSFLADFHLCY-----GYWRKAC--CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~-----~YWkkya--~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
...|++.+...|-.. .-|.... .|..++|.++|++++...|.+.++|.+-....... +.++....+++
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456888888888542 2355544 47899999999999999999999999877766655 77777766654
No 128
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.13 E-value=0.32 Score=33.57 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 19 YWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 19 YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|...+ +++.++|++.|++++..-|.+...|.......... +.+.....+++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555 56777777777777776676777666655554444 55555554443
No 129
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.11 E-value=0.2 Score=32.19 Aligned_cols=43 Identities=5% Similarity=-0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCc
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYS 45 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~S 45 (73)
...|++++..+|-. ...|...+ .|+.++|++.|++++...|.+
T Consensus 35 ~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 35 IEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 45788999998877 67777766 899999999999999988854
No 130
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.93 E-value=0.34 Score=34.27 Aligned_cols=58 Identities=3% Similarity=-0.111 Sum_probs=38.5
Q ss_pred HccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 12 DFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 12 ~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.-|.....|...| +++.++|++.|++++..-|.+.+.|.......... +.++....++
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5566667777777 67778888888888877777777776665554444 5555544443
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.89 E-value=0.28 Score=32.78 Aligned_cols=35 Identities=3% Similarity=-0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQS 38 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~era 38 (73)
..|++.|...|-....|...+ .|..++|++.++++
T Consensus 138 ~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 138 PLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456667777776666666666 45555554444444
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=93.83 E-value=0.35 Score=30.11 Aligned_cols=67 Identities=6% Similarity=-0.073 Sum_probs=50.7
Q ss_pred HHHHHHHHHc--------cchHHHHHHHH-----hcchHHHHHHHHHHHhhc--------cCcHHHHHHHHHHHhhc-Cc
Q 041861 4 LVYNSFLADF--------HLCYGYWRKAC-----CALLTRVVEVFEQSMQSA--------TYSSDVWFHYCNLASEV-PP 61 (73)
Q Consensus 4 ~~Y~~fL~~f--------Pl~~~YWkkya-----~~~~~~a~~V~erav~~~--------p~SvdLW~~Yl~f~~~~-~~ 61 (73)
..|++.+..+ |.....|...+ .|+.++|++.|++++... |...+.+.+........ +.
T Consensus 64 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 64 HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 4567777664 77788888888 799999999999999864 66677777766666555 77
Q ss_pred chhhhhhhh
Q 041861 62 DGHRKSEYQ 70 (73)
Q Consensus 62 ~~~~~lf~~ 70 (73)
++....+++
T Consensus 144 ~~A~~~~~~ 152 (283)
T 3edt_B 144 EEVEYYYRR 152 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 133
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.61 E-value=0.34 Score=30.78 Aligned_cols=67 Identities=3% Similarity=-0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHc--------cchHHHHHHHH-----hcchHHHHHHHHHHHhh--------ccCcHHHHHHHHHHHhhc-Cc
Q 041861 4 LVYNSFLADF--------HLCYGYWRKAC-----CALLTRVVEVFEQSMQS--------ATYSSDVWFHYCNLASEV-PP 61 (73)
Q Consensus 4 ~~Y~~fL~~f--------Pl~~~YWkkya-----~~~~~~a~~V~erav~~--------~p~SvdLW~~Yl~f~~~~-~~ 61 (73)
..|++.+..+ |.....|...+ .|+.++|++.|++++.. -|.....|.......... +.
T Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 132 PLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 4566667665 77777888877 79999999999999996 566666777766665555 77
Q ss_pred chhhhhhhh
Q 041861 62 DGHRKSEYQ 70 (73)
Q Consensus 62 ~~~~~lf~~ 70 (73)
++....+++
T Consensus 212 ~~A~~~~~~ 220 (311)
T 3nf1_A 212 KQAETLYKE 220 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 134
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.59 E-value=0.19 Score=28.38 Aligned_cols=42 Identities=10% Similarity=-0.072 Sum_probs=37.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccC
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~ 44 (73)
...|++.+...|-....|..++ .|+.++|++.|++++...|.
T Consensus 39 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 39 LPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999888 89999999999999997774
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.34 E-value=0.33 Score=28.58 Aligned_cols=46 Identities=2% Similarity=-0.098 Sum_probs=36.1
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++|+.--|...+.|.+-....... +.++....+++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 78999999999999999999999998766555544 66665555443
No 136
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.28 E-value=0.29 Score=37.16 Aligned_cols=67 Identities=6% Similarity=-0.082 Sum_probs=55.4
Q ss_pred HHHHHHH--------HHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 4 LVYNSFL--------ADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 4 ~~Y~~fL--------~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
..|++.+ ...|-....|...+ .|+.++|++.|+++++.-|.+.+.|.+........ +.++....|+
T Consensus 412 ~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 491 (681)
T 2pzi_A 412 DSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFT 491 (681)
T ss_dssp HHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4677788 88899999999888 89999999999999999999999999877665555 7777777666
Q ss_pred h
Q 041861 70 Q 70 (73)
Q Consensus 70 ~ 70 (73)
+
T Consensus 492 ~ 492 (681)
T 2pzi_A 492 E 492 (681)
T ss_dssp H
T ss_pred H
Confidence 5
No 137
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.20 E-value=0.48 Score=30.07 Aligned_cols=67 Identities=6% Similarity=-0.095 Sum_probs=50.2
Q ss_pred HHHHHHHHHc--------cchHHHHHHHH-----hcchHHHHHHHHHHHhhc--------cCcHHHHHHHHHHHhhc-Cc
Q 041861 4 LVYNSFLADF--------HLCYGYWRKAC-----CALLTRVVEVFEQSMQSA--------TYSSDVWFHYCNLASEV-PP 61 (73)
Q Consensus 4 ~~Y~~fL~~f--------Pl~~~YWkkya-----~~~~~~a~~V~erav~~~--------p~SvdLW~~Yl~f~~~~-~~ 61 (73)
..|++.+..+ |.....|...+ .|+.++|++.|++++... |.....|.......... +.
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 4566777664 77777888877 899999999999999865 66666777776666655 77
Q ss_pred chhhhhhhh
Q 041861 62 DGHRKSEYQ 70 (73)
Q Consensus 62 ~~~~~lf~~ 70 (73)
++....+++
T Consensus 170 ~~A~~~~~~ 178 (311)
T 3nf1_A 170 EEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 138
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.95 E-value=0.58 Score=29.97 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcc---chHHHHHHHH-------------hcchHHHHHHHHHHHhhccCcHHHHH
Q 041861 3 RLVYNSFLADFH---LCYGYWRKAC-------------CALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 3 r~~Y~~fL~~fP---l~~~YWkkya-------------~~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
...|++++..+| ....-+...+ .|+.++|++.|++++...|.+...+.
T Consensus 72 ~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 135 (261)
T 3qky_A 72 ASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD 135 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence 467999999988 4444444444 36799999999999999999877663
No 139
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.87 E-value=0.44 Score=34.35 Aligned_cols=57 Identities=9% Similarity=-0.150 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcc---chHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFH---LCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fP---l~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
...|++.+...| -....|...+ .|+.++|++.|++++..-|...+.|..........
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 457889999999 8999999998 89999999999999999999999888776655443
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.32 E-value=0.2 Score=34.68 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=34.8
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
...|++.|...|-....|...+ +|+.++|++.|++++.--|.+.+.+......
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4578999999999999999888 8999999999999999889888887765443
No 141
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=92.14 E-value=0.15 Score=31.16 Aligned_cols=47 Identities=4% Similarity=-0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
...|++.+...|-....|..++ .|+.++|++.|++++..-| +.+.+.
T Consensus 26 ~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 26 LNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp HHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence 3567777888888888888888 7888899999998888777 665443
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.11 E-value=0.67 Score=28.31 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=43.4
Q ss_pred hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 16 CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 16 ~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
....|...+ .|+.++|++.|++++..-|.+.+.|.+........ +.++....+++
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345666666 79999999999999999999999998887776665 77766666554
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.64 E-value=0.71 Score=30.76 Aligned_cols=53 Identities=2% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 18 GYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
..|+..+ .|+.++|++.|++++..-|.+.++|.+........ +.+++...+++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4455555 79999999999999999999999999887776665 76666665554
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.48 E-value=1.3 Score=26.25 Aligned_cols=49 Identities=8% Similarity=-0.116 Sum_probs=41.9
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcH-HHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSS-DVWFH 51 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~Sv-dLW~~ 51 (73)
...+++.|..-|-....|...+ +|+.++|++.|++++.--|.+. .++..
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3568889999999999999888 8999999999999999999877 44433
No 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.20 E-value=0.8 Score=31.40 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
...|++.+...|-....|...+ .|..++|++.|++++..-|.+.++|.+
T Consensus 233 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4567888888999999888888 789999999999999999998887754
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.79 E-value=0.43 Score=34.78 Aligned_cols=53 Identities=6% Similarity=-0.051 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNL 55 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f 55 (73)
...|++.++..|-....|...+ +|+.++|++.|++|++.-|.+.+.|......
T Consensus 60 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 60 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4578899999999999999988 8999999999999999999988888876554
No 147
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.77 E-value=0.29 Score=35.52 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccch--HHHHHHHH----------hcchHHHHHHHHHHHhhccC-cHHHHHHHHHHHhhc--Ccchhhhh
Q 041861 3 RLVYNSFLADFHLC--YGYWRKAC----------CALLTRVVEVFEQSMQSATY-SSDVWFHYCNLASEV--PPDGHRKS 67 (73)
Q Consensus 3 r~~Y~~fL~~fPl~--~~YWkkya----------~~~~~~a~~V~erav~~~p~-SvdLW~~Yl~f~~~~--~~~~~~~l 67 (73)
+...++-++-=|-. ..-|.-+. -|+.++|++.|+||++=-|. ++|....|..|.... +.+..++.
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 44556666666662 22444444 28999999999999998897 499999999999874 67776666
Q ss_pred hhh
Q 041861 68 EYQ 70 (73)
Q Consensus 68 f~~ 70 (73)
+++
T Consensus 263 L~k 265 (301)
T 3u64_A 263 LDR 265 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 148
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.27 E-value=0.57 Score=33.07 Aligned_cols=57 Identities=4% Similarity=-0.130 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
...|++.|...|-....|...+ +++.++|++.|++|++--|...+++..........
T Consensus 293 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 293 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3568888999999998998888 89999999999999999999999888766655543
No 149
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.25 E-value=0.75 Score=30.07 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHccchHHHHHHHH-----hcc----------hHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC-----CAL----------LTRVVEVFEQSMQSATYSSDVWFHYCNLA 56 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya-----~~~----------~~~a~~V~erav~~~p~SvdLW~~Yl~f~ 56 (73)
++..|++.+...|-...-|..+. ++. +++|+..|++|++--|...+.|.+--+..
T Consensus 21 A~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 46789999999999999999998 333 56999999999999999999887644433
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.20 E-value=0.89 Score=32.70 Aligned_cols=57 Identities=5% Similarity=-0.104 Sum_probs=44.7
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
...|++.|...|-....|...+ +++.++|++.|+++++--|.+.+.|..........
T Consensus 337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999998888 89999999999999999999888887766554433
No 151
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=89.29 E-value=1.5 Score=27.77 Aligned_cols=45 Identities=4% Similarity=-0.075 Sum_probs=36.2
Q ss_pred HHHHHHHHHHccch---HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 3 RLVYNSFLADFHLC---YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 3 r~~Y~~fL~~fPl~---~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
...|++++..+|-. ..-|...+ .|+.++|++.|++++...|.+..
T Consensus 24 ~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 24 ITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 46799999998864 24455444 89999999999999999998765
No 152
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.76 E-value=2.4 Score=27.96 Aligned_cols=67 Identities=4% Similarity=-0.064 Sum_probs=43.7
Q ss_pred HHHHHHHHHccch------HHHHHHHH-----h-cchHHHHHHHHHHHhhccCc------HHHHHHHHHHHhhc-Ccchh
Q 041861 4 LVYNSFLADFHLC------YGYWRKAC-----C-ALLTRVVEVFEQSMQSATYS------SDVWFHYCNLASEV-PPDGH 64 (73)
Q Consensus 4 ~~Y~~fL~~fPl~------~~YWkkya-----~-~~~~~a~~V~erav~~~p~S------vdLW~~Yl~f~~~~-~~~~~ 64 (73)
..|++-+..+|-. ...+...+ . |+.++|++.|++|+.-.|.. .+.+.+........ +.++.
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4566667666654 34566655 4 88889999999998876642 45666666655555 66666
Q ss_pred hhhhhh
Q 041861 65 RKSEYQ 70 (73)
Q Consensus 65 ~~lf~~ 70 (73)
...+++
T Consensus 178 ~~~~~~ 183 (292)
T 1qqe_A 178 SDIYSK 183 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 153
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.29 E-value=3.9 Score=26.92 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=34.7
Q ss_pred HHHHHHHHHccch------HHHHHHHH-----hcchHHHHHHHHHHHhhccCcHH
Q 041861 4 LVYNSFLADFHLC------YGYWRKAC-----CALLTRVVEVFEQSMQSATYSSD 47 (73)
Q Consensus 4 ~~Y~~fL~~fPl~------~~YWkkya-----~~~~~~a~~V~erav~~~p~Svd 47 (73)
..|++-|..+|-. ...+.+.+ +|+.++|++.|++++...|.+.+
T Consensus 139 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 139 DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 5688888888843 45677776 89999999999999997776544
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.88 E-value=3.5 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 27 LLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 27 ~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
..++|++.|++++..-|...+.|.+-
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 34445555555555445444444443
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=86.66 E-value=4.8 Score=26.11 Aligned_cols=66 Identities=3% Similarity=-0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHccc-------hH-----HHHHHHH-----hcchHHHHHHHHHHHhh-------ccCcHHHH----HHHHHH
Q 041861 4 LVYNSFLADFHL-------CY-----GYWRKAC-----CALLTRVVEVFEQSMQS-------ATYSSDVW----FHYCNL 55 (73)
Q Consensus 4 ~~Y~~fL~~fPl-------~~-----~YWkkya-----~~~~~~a~~V~erav~~-------~p~SvdLW----~~Yl~f 55 (73)
..|++-|.--|- .. ..|-.-+ +|..++|++.|++||.- -|...+.| .+=-..
T Consensus 32 ~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~a 111 (159)
T 2hr2_A 32 ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALA 111 (159)
T ss_dssp HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHH
Confidence 467888887777 22 2777777 89999999999999998 89888899 543333
Q ss_pred Hhhc-Ccchhhhhhh
Q 041861 56 ASEV-PPDGHRKSEY 69 (73)
Q Consensus 56 ~~~~-~~~~~~~lf~ 69 (73)
+... +.++...-|.
T Consensus 112 L~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 112 LDGLGRGAEAMPEFK 126 (159)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 3333 5555444443
No 156
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=86.51 E-value=4.1 Score=27.15 Aligned_cols=68 Identities=3% Similarity=-0.112 Sum_probs=43.0
Q ss_pred HHHHHHHHHHccchH----HHHHHHH-----hcchHHHHHHHHHHHhh------ccCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 3 RLVYNSFLADFHLCY----GYWRKAC-----CALLTRVVEVFEQSMQS------ATYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~----~YWkkya-----~~~~~~a~~V~erav~~------~p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
...|++.+...|-.. ..|...+ .|+.++|++.|++++.. -|...+.|.......... +.++...
T Consensus 68 ~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 68 VAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777643 3455555 78888888888888875 355556666655555444 6666555
Q ss_pred hhhh
Q 041861 67 SEYQ 70 (73)
Q Consensus 67 lf~~ 70 (73)
.+++
T Consensus 148 ~~~~ 151 (411)
T 4a1s_A 148 CCER 151 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 157
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=86.39 E-value=4.4 Score=25.39 Aligned_cols=67 Identities=4% Similarity=-0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHHccch----HHHHHHHH-----hcchHHHHHHHHHHHhh------ccCcHHHHHHHHHHHhhc-Ccchhhh
Q 041861 3 RLVYNSFLADFHLC----YGYWRKAC-----CALLTRVVEVFEQSMQS------ATYSSDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 3 r~~Y~~fL~~fPl~----~~YWkkya-----~~~~~~a~~V~erav~~------~p~SvdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
...|++.+...|-. ...+...+ .|+.++|++.+++++.. -|.....|..-....... +.++...
T Consensus 25 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 104 (338)
T 3ro2_A 25 VSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104 (338)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 34566777766654 23444444 67788888888887764 223344444444333333 5555555
Q ss_pred hhh
Q 041861 67 SEY 69 (73)
Q Consensus 67 lf~ 69 (73)
.++
T Consensus 105 ~~~ 107 (338)
T 3ro2_A 105 CCQ 107 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 158
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=86.38 E-value=2.2 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=24.3
Q ss_pred hcchHHHHHHHHHHHhh--ccCcHHHHHHHHHHHhh
Q 041861 25 CALLTRVVEVFEQSMQS--ATYSSDVWFHYCNLASE 58 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~--~p~SvdLW~~Yl~f~~~ 58 (73)
.|+..+|.+||++|+++ -|. -.|-..|-.|..+
T Consensus 114 ~g~~~~A~~Vy~~Gi~~~A~P~-~rL~~~~~~F~~R 148 (152)
T 4a1g_A 114 QGELQHASAVLQRGIQNQAEPR-EFLQQQYRLFQTR 148 (152)
T ss_dssp TTCHHHHHHHHHHHHHTTCBSH-HHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHHHHH
Confidence 58889999999999984 442 4477777777654
No 159
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=86.31 E-value=3.4 Score=25.92 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.5
Q ss_pred hcchHHHHHHHHHHHhhcc
Q 041861 25 CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p 43 (73)
.|+.++|++.+++++...|
T Consensus 236 ~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4555666666665555433
No 160
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=84.69 E-value=4 Score=26.74 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.1
Q ss_pred hcchHHHHHHHHHHHhhcc
Q 041861 25 CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p 43 (73)
.|+.++|++.|++++.-.|
T Consensus 240 ~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHH
Confidence 4555555555555555433
No 161
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=84.64 E-value=2.9 Score=27.65 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=27.6
Q ss_pred hcchHHHHHHHHHHHhh--ccCcHHHHHHHHHHHhhc
Q 041861 25 CALLTRVVEVFEQSMQS--ATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~--~p~SvdLW~~Yl~f~~~~ 59 (73)
.|+..+|.+||++|+++ -| .-.|-..|-.|..+.
T Consensus 109 ~~~~~~A~~Iy~~Gi~~~A~P-~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 109 RENFRKADAIFQEGIQQKAEP-LERLQSQHRQFQARV 144 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHH
Confidence 68999999999999995 34 356888888888765
No 162
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=83.87 E-value=3.9 Score=22.70 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=25.3
Q ss_pred hcchHHHHHHHHHHHhhccCc------HHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYS------SDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S------vdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.|+.++|.+.+++++.-.+.. ...+.+........ +.++....++
T Consensus 62 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 62 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678888888888888755432 22333333333222 5555555444
No 163
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=82.94 E-value=5 Score=26.72 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=11.2
Q ss_pred hcchHHHHHHHHHHHhhcc
Q 041861 25 CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p 43 (73)
.|+.++|++.|++++...|
T Consensus 276 ~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 4566666666666665444
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=82.92 E-value=6.4 Score=25.73 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=43.0
Q ss_pred HHHHHHHHHccch------HHHHHHHH-----hcchHHHHHHHHHHHhhccCc------HHHHHHHHHHHhhc-Ccchhh
Q 041861 4 LVYNSFLADFHLC------YGYWRKAC-----CALLTRVVEVFEQSMQSATYS------SDVWFHYCNLASEV-PPDGHR 65 (73)
Q Consensus 4 ~~Y~~fL~~fPl~------~~YWkkya-----~~~~~~a~~V~erav~~~p~S------vdLW~~Yl~f~~~~-~~~~~~ 65 (73)
..|++.+..+|-. ...+...+ .|+.++|++.|++++...+.. ...+.......... +.++..
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4566667666655 44455555 799999999999999865433 33555544444433 777776
Q ss_pred hhhhh
Q 041861 66 KSEYQ 70 (73)
Q Consensus 66 ~lf~~ 70 (73)
..+++
T Consensus 328 ~~~~~ 332 (406)
T 3sf4_A 328 HFAEK 332 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=81.27 E-value=9.5 Score=28.60 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=37.7
Q ss_pred HHHHHHHHHccchHHHH--HHHH---hcc----------hHHHHHHHHHHHhhccCcHHHHHHHHHHHhh
Q 041861 4 LVYNSFLADFHLCYGYW--RKAC---CAL----------LTRVVEVFEQSMQSATYSSDVWFHYCNLASE 58 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YW--kkya---~~~----------~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~ 58 (73)
..|++.|...|=.+..| ++.+ ++. .+++.+.+++++..-|-+-..|.+=.-.+..
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45777777788777777 3344 444 6777778888888777788888765544443
No 166
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=81.27 E-value=4.9 Score=23.05 Aligned_cols=42 Identities=7% Similarity=-0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhccC
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p~ 44 (73)
+..+++-|..-|-|-.-+.-.+ .|+.++|++.|++.+..-|.
T Consensus 29 ~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 29 SLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666666655555 56666666666666665554
No 167
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.92 E-value=5.1 Score=27.40 Aligned_cols=41 Identities=5% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHH-----hcchHHHHHHHHHHHhh--ccCcHHHHHHHHHHHhhc
Q 041861 18 GYWRKAC-----CALLTRVVEVFEQSMQS--ATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~erav~~--~p~SvdLW~~Yl~f~~~~ 59 (73)
-++..|| .|+..+|.+||++|+++ -| .-.|-..|-.|..+.
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P-~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAENNCRP-YNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-HHHHHHHHHHHHHHH
Confidence 3444555 79999999999999994 44 356999999998875
No 168
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=77.54 E-value=6.4 Score=27.28 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=27.8
Q ss_pred hcchHHHHHHHHHHHhh--ccCcHHHHHHHHHHHhh
Q 041861 25 CALLTRVVEVFEQSMQS--ATYSSDVWFHYCNLASE 58 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~--~p~SvdLW~~Yl~f~~~ 58 (73)
.|+..+|.+||++|+++ -| --.|-..|-.|..+
T Consensus 163 ~g~~~~A~~Vy~~Gi~~~A~P-~~rL~~~~~~F~~R 197 (223)
T 4aez_C 163 RGLFQKADEVYQKGKRMKAKP-FLRFQQKYQQFTHR 197 (223)
T ss_dssp TTCHHHHHHHHHHHHHHTCBS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcc-HHHHHHHHHHHHHH
Confidence 68999999999999994 45 35689999999887
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.31 E-value=6.1 Score=25.61 Aligned_cols=41 Identities=7% Similarity=-0.051 Sum_probs=35.1
Q ss_pred HHHHHHHHH-------ccchHHHH----HHHH-----hcchHHHHHHHHHHHhhccC
Q 041861 4 LVYNSFLAD-------FHLCYGYW----RKAC-----CALLTRVVEVFEQSMQSATY 44 (73)
Q Consensus 4 ~~Y~~fL~~-------fPl~~~YW----kkya-----~~~~~~a~~V~erav~~~p~ 44 (73)
..|++-|.. -|-...-| ..-+ +|..++|++.|++|+.-.|.
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 468888888 99998999 6555 89999999999999997764
No 170
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=75.00 E-value=15 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=25.9
Q ss_pred HHHHHHHHHccch------HHHHHHHH-----hcchHHHHHHHHHHHhhcc
Q 041861 4 LVYNSFLADFHLC------YGYWRKAC-----CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 4 ~~Y~~fL~~fPl~------~~YWkkya-----~~~~~~a~~V~erav~~~p 43 (73)
..|++-|..+|-. ...+.+.+ +|+.++|++.|++++...|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566666666532 44555555 6778888888888887544
No 171
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.37 E-value=8 Score=26.42 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=40.2
Q ss_pred hHHHHHHHHHH--c----cchHHHHHHHH--------hcch--H-HHH-HHHHHHHhhccCc---------HHHHHHHHH
Q 041861 2 IRLVYNSFLAD--F----HLCYGYWRKAC--------CALL--T-RVV-EVFEQSMQSATYS---------SDVWFHYCN 54 (73)
Q Consensus 2 ~r~~Y~~fL~~--f----Pl~~~YWkkya--------~~~~--~-~a~-~V~erav~~~p~S---------vdLW~~Yl~ 54 (73)
.|..|++-|.. + || +-|-+|. .|+. + .-. .++|||+..+-.+ +.+|+.|+.
T Consensus 11 ~r~~fE~~l~~~l~~~dDPL--~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 11 TKIAYEQRLLNDLEDMDDPL--DLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHTGGGCSCHH--HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCch--HHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 35666666665 3 43 5688888 3443 1 234 7899999976442 339999999
Q ss_pred HHhhcCcchhhhhhh
Q 041861 55 LASEVPPDGHRKSEY 69 (73)
Q Consensus 55 f~~~~~~~~~~~lf~ 69 (73)
+....+..+.+.+|+
T Consensus 89 ~~~~~~~~~p~~if~ 103 (202)
T 3esl_A 89 LFLSNNFHESENTFK 103 (202)
T ss_dssp HHSTTCHHHHHHHHH
T ss_pred hhcccccCCHHHHHH
Confidence 862222334445554
No 172
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=71.05 E-value=17 Score=22.93 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=16.2
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
.++.++|++.|++++. |.+.+.|........
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYY 49 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 4556666666666665 444555544443333
No 173
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=69.78 E-value=22 Score=23.75 Aligned_cols=46 Identities=7% Similarity=0.149 Sum_probs=26.5
Q ss_pred hcchHHHHHHHHHHHh-----hc-cCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQ-----SA-TYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~-----~~-p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++|+. .- |.....+.+-....... +.+.+...+++
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778888888888877 33 54444444444333333 55555554443
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=68.78 E-value=18 Score=23.38 Aligned_cols=48 Identities=6% Similarity=-0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHHccchHHHHHHHH-----h-----------cchHHHHHHHHHHHhhccCcHHHHH
Q 041861 3 RLVYNSFLADFHLCYGYWRKAC-----C-----------ALLTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 3 r~~Y~~fL~~fPl~~~YWkkya-----~-----------~~~~~a~~V~erav~~~p~SvdLW~ 50 (73)
...|++-|..-|-...-|.... + ++.++|++-|++|+.-=|.+.+-|.
T Consensus 66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3578999999999998888877 3 4799999999999998787654433
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=66.61 E-value=25 Score=23.14 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHHccc------hHHHHHHHH----hcchHHHHHHHHHHHhhccCc------HHHHHHHHHHHhhc-Ccchhhh
Q 041861 4 LVYNSFLADFHL------CYGYWRKAC----CALLTRVVEVFEQSMQSATYS------SDVWFHYCNLASEV-PPDGHRK 66 (73)
Q Consensus 4 ~~Y~~fL~~fPl------~~~YWkkya----~~~~~~a~~V~erav~~~p~S------vdLW~~Yl~f~~~~-~~~~~~~ 66 (73)
..|++-|..++- ....+...+ .|+.++|++.|++|+.-.|.. .+.+.+........ +.++...
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456666666543 234455555 478999999999999866532 45666666655555 6666666
Q ss_pred hhhh
Q 041861 67 SEYQ 70 (73)
Q Consensus 67 lf~~ 70 (73)
.+++
T Consensus 177 ~~~~ 180 (307)
T 2ifu_A 177 SLQK 180 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 176
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=65.21 E-value=28 Score=23.29 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=24.5
Q ss_pred hcchHHHHHHHHHHHh-----hccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQ-----SATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 25 ~~~~~~a~~V~erav~-----~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.|+.++|++.|++|+. .-|.....+.+-....... +.+.+...++
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5677777777777777 5555444443333333222 5555555444
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=64.78 E-value=17 Score=25.27 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=45.5
Q ss_pred HHHHHHHHHccchHHHHHHHH-----hc--chHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRKAC-----CA--LLTRVVEVFEQSMQSATYSSDVWFHYCNLA 56 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkkya-----~~--~~~~a~~V~erav~~~p~SvdLW~~Yl~f~ 56 (73)
..+++.|...|=.+..|..=. ++ ..+++.+.+++++..-|-+-..|.+=-..+
T Consensus 54 ~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 54 HITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 468899999999999996444 66 899999999999999999999998765555
No 178
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.03 E-value=15 Score=23.87 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHhhccC--cHHHHHHHHHHHhhc
Q 041861 27 LLTRVVEVFEQSMQSATY--SSDVWFHYCNLASEV 59 (73)
Q Consensus 27 ~~~~a~~V~erav~~~p~--SvdLW~~Yl~f~~~~ 59 (73)
....+..-||..|.+..- -+|+|..|+.++..+
T Consensus 5 ~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~ 39 (152)
T 4a1g_A 5 TPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN 39 (152)
T ss_dssp HHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 345666678888887421 366999999999988
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=61.40 E-value=22 Score=20.82 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=30.2
Q ss_pred chHHHHHHHH-----hcchHHHHHHHHHHHh------hccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 15 LCYGYWRKAC-----CALLTRVVEVFEQSMQ------SATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 15 l~~~YWkkya-----~~~~~~a~~V~erav~------~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.....|...+ .|+.++|.+.+++++. .-|.....+.+-....... +.++....+++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444 6788888888888887 3333333444333333333 55555555443
No 180
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=61.26 E-value=13 Score=26.53 Aligned_cols=47 Identities=6% Similarity=-0.052 Sum_probs=39.1
Q ss_pred hcchHHHHHHHHHHHhhcc--CcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSAT--YSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p--~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|.+++++++..-| .++++..--....... +++..++++++.
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7999999999999999876 7889888777766666 888888887654
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=61.08 E-value=22 Score=20.79 Aligned_cols=38 Identities=5% Similarity=-0.012 Sum_probs=26.8
Q ss_pred HHHHHHHH------HccchHHHHHHHH-----hcchHHHHHHHHHHHhh
Q 041861 4 LVYNSFLA------DFHLCYGYWRKAC-----CALLTRVVEVFEQSMQS 41 (73)
Q Consensus 4 ~~Y~~fL~------~fPl~~~YWkkya-----~~~~~~a~~V~erav~~ 41 (73)
..|++.+. .-|.....+...+ .|+.++|++.+++++..
T Consensus 47 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 47 ASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555 3444445555555 79999999999999986
No 182
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=59.14 E-value=22 Score=19.98 Aligned_cols=38 Identities=3% Similarity=-0.171 Sum_probs=30.0
Q ss_pred hHHHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHH
Q 041861 16 CYGYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYC 53 (73)
Q Consensus 16 ~~~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl 53 (73)
....+..++ +|+.++|...+++++.--|.+...-.+.-
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344555566 89999999999999999999888765543
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=59.07 E-value=27 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHccchHHHHHH--HH---hc--chHHHHHHHHHHHhhccCcHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWRK--AC---CA--LLTRVVEVFEQSMQSATYSSDVWFH 51 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkk--ya---~~--~~~~a~~V~erav~~~p~SvdLW~~ 51 (73)
..+++.|...|-+|..|-- ++ ++ +.+++.+.++++++-=|....-|.+
T Consensus 94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~ 148 (567)
T 1dce_A 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDY 148 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHH
Confidence 3577788888888888843 33 55 5577888888888877777777754
No 184
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=58.33 E-value=11 Score=22.00 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=19.6
Q ss_pred HHHHH-hcchHHHHHHHHHHHhhc
Q 041861 20 WRKAC-CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 20 Wkkya-~~~~~~a~~V~erav~~~ 42 (73)
|..|. +.|.++|..+|+|=|..+
T Consensus 43 ~~~yv~L~G~~kaqrlF~rHi~kL 66 (69)
T 2k85_A 43 YQDYVYLEGTQKAKKLFLQHIHRL 66 (69)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHh
Confidence 67777 999999999999988754
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=57.75 E-value=35 Score=24.18 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHccchHHHH--HHHH---hcc-hHHHHHHHHHHHhhccCcHHHHH
Q 041861 5 VYNSFLADFHLCYGYW--RKAC---CAL-LTRVVEVFEQSMQSATYSSDVWF 50 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YW--kkya---~~~-~~~a~~V~erav~~~p~SvdLW~ 50 (73)
.+++.|...|-.|.-| +.++ ++. .+++.+-+.+++..-|....-|.
T Consensus 132 ~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 132 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4555555555555555 3333 333 35566666666665566666663
No 186
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=57.61 E-value=35 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=27.6
Q ss_pred hcchHHHHHHHHHHH---hhccCcH----HHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSM---QSATYSS----DVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav---~~~p~Sv----dLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|++.|++|+ ...|..- ..+.+........ +.+++...+++
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 688888888888888 4455422 3444444443333 66665555543
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=55.20 E-value=25 Score=25.25 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=23.9
Q ss_pred HHHHHHHHccchHHHHHHHH-----hc-chHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CA-LLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~-~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
.+++.|...|=.+..|.-=. ++ ..+++.+.+++++..-|-+-..|.+=
T Consensus 76 lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 76 LTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34555555555555553222 33 35555555555555555555555443
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=54.99 E-value=24 Score=19.26 Aligned_cols=39 Identities=8% Similarity=-0.092 Sum_probs=26.2
Q ss_pred HHHHHHHHHccch------HHHHHHHH-----hcchHHHHHHHHHHHhhc
Q 041861 4 LVYNSFLADFHLC------YGYWRKAC-----CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 4 ~~Y~~fL~~fPl~------~~YWkkya-----~~~~~~a~~V~erav~~~ 42 (73)
..|++.+..+|-. ...+...+ .|+.++|++.+++++...
T Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555555443 33444444 799999999999999854
No 189
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.79 E-value=9.7 Score=22.31 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=18.8
Q ss_pred HHHH-hcchHHHHHHHHHHHhhc
Q 041861 21 RKAC-CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 21 kkya-~~~~~~a~~V~erav~~~ 42 (73)
+.|| +||.|.|..-|+.+++.+
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHH
Confidence 4677 899999999999998864
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=53.78 E-value=42 Score=23.77 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=41.0
Q ss_pred HHHHHHHHHccchHHHHH--HHH---hc--chHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 4 LVYNSFLADFHLCYGYWR--KAC---CA--LLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWk--kya---~~--~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
..++..|..+|=++.-|- .++ ++ +.+++.+.+++++..=|.+-..|.+=
T Consensus 95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R 150 (331)
T 3dss_A 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 150 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 467889999999999995 444 45 47899999999999999999999753
No 191
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=53.22 E-value=45 Score=21.87 Aligned_cols=67 Identities=7% Similarity=-0.108 Sum_probs=38.3
Q ss_pred HHHHHHHHHc--------cchHHHHHHHH-----hcchHHHHHHHHHHHhhccCc-----HHHHHHHHHHHhhc-Ccchh
Q 041861 4 LVYNSFLADF--------HLCYGYWRKAC-----CALLTRVVEVFEQSMQSATYS-----SDVWFHYCNLASEV-PPDGH 64 (73)
Q Consensus 4 ~~Y~~fL~~f--------Pl~~~YWkkya-----~~~~~~a~~V~erav~~~p~S-----vdLW~~Yl~f~~~~-~~~~~ 64 (73)
..|++.|... |.....+...+ .|+.++|++.+++++...|.+ +..+.......... +.++.
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4566666665 33333344333 799999999999999866542 22333322222222 66666
Q ss_pred hhhhhh
Q 041861 65 RKSEYQ 70 (73)
Q Consensus 65 ~~lf~~ 70 (73)
...+++
T Consensus 194 ~~~l~~ 199 (373)
T 1hz4_A 194 RSQLNR 199 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 192
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=50.66 E-value=40 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHh----hccCcHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQ----SATYSSD 47 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~----~~p~Svd 47 (73)
+|..|..|+..+.=|..-|..+. ....+.+.....+|+. +.+.|++
T Consensus 167 LR~lYr~~v~~~~s~~~~~~~~~~~yg~~~~~~vl~fL~~AL~~DL~S~~pSi~ 220 (246)
T 1xkp_A 167 LRDTYRDAVMGYQGIYAIWSDLQXRFPNGDIDSVILFLQXALSADLQSQQSGSG 220 (246)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHCCCSHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 79999999999998888888887 6679999999999987 5667776
No 193
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=49.50 E-value=22 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=29.7
Q ss_pred hcchHHHHHHHHHHHhh-------ccCcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQS-------ATYSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~-------~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.|+.++|++.|++|+.. -|....++.+........ +.+++...++
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78999999999999952 222334666666555544 6666655544
No 194
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=48.89 E-value=71 Score=22.87 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred HHHHHHHHHccchHHHHH--HHH---h-c-chHHHHHHHHHHHhhccCcHHHHHHHHHHHh
Q 041861 4 LVYNSFLADFHLCYGYWR--KAC---C-A-LLTRVVEVFEQSMQSATYSSDVWFHYCNLAS 57 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWk--kya---~-~-~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~ 57 (73)
..++..|..+|=++.-|- +++ + + +.+++.+.+++++..-|.+-..|.+ -.++.
T Consensus 110 ~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~-R~wvl 169 (349)
T 3q7a_A 110 RLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY-LHWLY 169 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHH
Confidence 467899999999999994 444 4 6 7899999999999999999999975 34443
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=48.23 E-value=33 Score=25.80 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHH-----hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 18 GYWRKAC-----CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 18 ~YWkkya-----~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
+.|.+.| +|+.++|++.|++| .+++.|..-+......
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 6788888 89999999999999 4789999866655543
No 196
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.05 E-value=55 Score=21.34 Aligned_cols=51 Identities=6% Similarity=0.069 Sum_probs=29.1
Q ss_pred hHHHHHHHH--hcchHHHHHHHHHHHhh-cc-CcHHHHHHHHHHHhhc-Ccchhhhhhh
Q 041861 16 CYGYWRKAC--CALLTRVVEVFEQSMQS-AT-YSSDVWFHYCNLASEV-PPDGHRKSEY 69 (73)
Q Consensus 16 ~~~YWkkya--~~~~~~a~~V~erav~~-~p-~SvdLW~~Yl~f~~~~-~~~~~~~lf~ 69 (73)
.-..|.+|| .++ ..+||+-.-.+ |. ..-.+|..|+.++... +-.++.+||.
T Consensus 65 yLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 65 FLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345688888 333 44455444432 21 2455777777777766 6666666654
No 197
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=47.93 E-value=52 Score=21.08 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHccchHHHHHHHH--------hcchHHHHHHHHHHHhhc-c-CcHHHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC--------CALLTRVVEVFEQSMQSA-T-YSSDVW 49 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya--------~~~~~~a~~V~erav~~~-p-~SvdLW 49 (73)
+|..|++-+..=|---.-.++|| .++.++++..++..++.- | ..-|-+
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~l 74 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYV 74 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHH
Confidence 46778888877777778888888 236678888888888876 5 335544
No 198
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=47.90 E-value=36 Score=24.98 Aligned_cols=46 Identities=4% Similarity=-0.217 Sum_probs=27.1
Q ss_pred hcchHHHHHHHHHHHhh-ccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQS-ATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~-~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
.|+.++|.++|++.... +++++.-|..-+.-.... +.+++.++|++
T Consensus 118 ~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 56666777766665553 444565565555544444 66666666654
No 199
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=47.78 E-value=30 Score=24.15 Aligned_cols=47 Identities=9% Similarity=-0.070 Sum_probs=36.4
Q ss_pred hcchHHHHHHHHHHHhhc--cC-cHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSA--TY-SSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~--p~-SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
+|..++|+.-|++++..- |. ..|.+......+... +.++.+.+|++.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999998642 44 678887777777766 888888877653
No 200
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.64 E-value=26 Score=20.18 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHHHHHHccc-hHHHHHHHH--hc--chHHHHHHHHHHHh
Q 041861 4 LVYNSFLADFHL-CYGYWRKAC--CA--LLTRVVEVFEQSMQ 40 (73)
Q Consensus 4 ~~Y~~fL~~fPl-~~~YWkkya--~~--~~~~a~~V~erav~ 40 (73)
+.+++-|..||. .-+.|.+.| .+ ..+++++-|+.-++
T Consensus 17 k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 17 QKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp HHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 456777888884 667888888 43 45555555554433
No 201
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=46.07 E-value=51 Score=20.57 Aligned_cols=12 Identities=0% Similarity=0.318 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 041861 28 LTRVVEVFEQSM 39 (73)
Q Consensus 28 ~~~a~~V~erav 39 (73)
.++|++.|++++
T Consensus 94 ~~~A~~~~~~a~ 105 (273)
T 1ouv_A 94 TNKALQYYSKAC 105 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.99 E-value=39 Score=19.03 Aligned_cols=55 Identities=11% Similarity=-0.090 Sum_probs=37.1
Q ss_pred hHHHHHHHH-----hcc---hHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhh
Q 041861 16 CYGYWRKAC-----CAL---LTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQ 70 (73)
Q Consensus 16 ~~~YWkkya-----~~~---~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~ 70 (73)
--+.|-.|+ .++ .++|...+++|+..=|.++.-+.......... +.++....+++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345666666 233 79999999999999999998666544443333 55555555544
No 203
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=44.44 E-value=21 Score=22.02 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=34.0
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-CcchhhhhhhhhhC
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQEEK 73 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~~~ 73 (73)
++-++.+++.||.||.. -+|-..|=.|...+ .--+-++|+..||+
T Consensus 22 i~F~~~VE~AYE~GV~r----~~ll~~Y~~FK~VVPsKsEEKql~reFE~ 67 (98)
T 2oy9_A 22 VHFFQAIEQAYDQGIAR----EDLLGKYRRFKEIVPSKSEEKQLFRAYEQ 67 (98)
T ss_dssp HHHHHHHHHHHTTCEEH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55677888888888875 67999999999988 55555667776653
No 204
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=44.20 E-value=53 Score=24.09 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=38.8
Q ss_pred hcchHHHHHHHHHHHhh-ccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQS-ATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~-~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|+.++|.++|++-... +.++...|..-+...... +.+++.+++++.
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 78999999999998874 666788888888777777 899999888764
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=44.10 E-value=77 Score=21.88 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHccchHHHHHH--HH---hcc------hHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc
Q 041861 4 LVYNSFLADFHLCYGYWRK--AC---CAL------LTRVVEVFEQSMQSATYSSDVWFHYCNLASEV 59 (73)
Q Consensus 4 ~~Y~~fL~~fPl~~~YWkk--ya---~~~------~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~ 59 (73)
..+++.+...|-.+.-|-- ++ ++. .+++.+-+.+++..-|.....|. |+.++...
T Consensus 167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~-y~~~ll~~ 232 (306)
T 3dra_A 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN-YLLGIHER 232 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH-HHHHHHHh
Confidence 3577888888888888853 33 444 78899999999999999999996 55655544
No 206
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=43.22 E-value=23 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=26.6
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHH
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHY 52 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Y 52 (73)
.++.+.|.+.|.+++..-|-..|.|.+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~ 46 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGR 46 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhH
Confidence 5889999999999999999999999987
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=40.94 E-value=93 Score=21.94 Aligned_cols=65 Identities=6% Similarity=-0.069 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcc-----------chHHHHHHHHhc--chHHHHHHHHHHHhhccC---cHHHHHHHHHHHhhcCcchhh
Q 041861 2 IRLVYNSFLADFH-----------LCYGYWRKACCA--LLTRVVEVFEQSMQSATY---SSDVWFHYCNLASEVPPDGHR 65 (73)
Q Consensus 2 ~r~~Y~~fL~~fP-----------l~~~YWkkya~~--~~~~a~~V~erav~~~p~---SvdLW~~Yl~f~~~~~~~~~~ 65 (73)
+++.++++....| .+..-|...+.| ..++|..+|+......|. +.-||. ..+...+-++..
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 3556666666666 234567777755 799999999999999886 334555 344444555555
Q ss_pred hhhh
Q 041861 66 KSEY 69 (73)
Q Consensus 66 ~lf~ 69 (73)
++.+
T Consensus 232 ~~L~ 235 (310)
T 3mv2_B 232 GIVE 235 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 208
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=38.03 E-value=76 Score=21.08 Aligned_cols=40 Identities=8% Similarity=-0.025 Sum_probs=30.8
Q ss_pred HHHHHHHH-----HccchHHHHHHHH-----hcchHHHHHHHHHHHhhcc
Q 041861 4 LVYNSFLA-----DFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 4 ~~Y~~fL~-----~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p 43 (73)
..|++.+. ..|.....+...+ .|+.++|.+.+++|+.-.+
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45666677 6777666666666 8999999999999999643
No 209
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.62 E-value=53 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhhc---cCcHHHHHHHHHHHhhc
Q 041861 28 LTRVVEVFEQSMQSA---TYSSDVWFHYCNLASEV 59 (73)
Q Consensus 28 ~~~a~~V~erav~~~---p~SvdLW~~Yl~f~~~~ 59 (73)
.++...-||+.|... .--+|+|..|+.++..+
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~ 85 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDN 85 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Confidence 566777899999874 23478999999999998
No 210
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=35.54 E-value=88 Score=20.69 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=30.1
Q ss_pred HHHHHHHH-----Hc-cchHHHHHHHH-----hcchHHHHHHHHHHHhhc
Q 041861 4 LVYNSFLA-----DF-HLCYGYWRKAC-----CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 4 ~~Y~~fL~-----~f-Pl~~~YWkkya-----~~~~~~a~~V~erav~~~ 42 (73)
..|++.+. .. |.....+...+ .|+.++|.+.+++|+.-.
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45666666 44 76666677777 799999999999999854
No 211
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=33.42 E-value=94 Score=19.82 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHHHHH-ccchHHHHHHHH-----hcchHHHHHHHHHHHhhc---cCcHHHHHHHHHH
Q 041861 3 RLVYNSFLAD-FHLCYGYWRKAC-----CALLTRVVEVFEQSMQSA---TYSSDVWFHYCNL 55 (73)
Q Consensus 3 r~~Y~~fL~~-fPl~~~YWkkya-----~~~~~~a~~V~erav~~~---p~SvdLW~~Yl~f 55 (73)
+..|..+|.+ |.++..+|+.+| ..+.+....+.+...... ..-.++|.+++.-
T Consensus 37 ~e~~~~yl~qdy~yl~~f~~~~a~~~~~~~~~~~~~~~~~~i~~e~~~~~~h~~l~~~~~~~ 98 (231)
T 1rcw_A 37 KEQLQAYAKDYYLHIKAFPKYLSAIHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFA 98 (231)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 3456666654 788999999999 345554444444444332 3347788887754
No 212
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=33.41 E-value=73 Score=22.50 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.8
Q ss_pred hcchHHHHHHHHHHHhhccCcHHHHHHHHHHHhhc-Ccchhhhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYSSDVWFHYCNLASEV-PPDGHRKSEYQE 71 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~SvdLW~~Yl~f~~~~-~~~~~~~lf~~~ 71 (73)
.|..++++..+++.+..-|..-++|...+...... +..++.+.|.+.
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777777777777777777777666655 666665555543
No 213
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=31.71 E-value=1e+02 Score=21.75 Aligned_cols=54 Identities=2% Similarity=0.022 Sum_probs=41.7
Q ss_pred HHHHHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhh------ccCcHHHHHHHHHHHhh
Q 041861 5 VYNSFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQS------ATYSSDVWFHYCNLASE 58 (73)
Q Consensus 5 ~Y~~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~------~p~SvdLW~~Yl~f~~~ 58 (73)
..++.+...|+-...|.... .|+..+|.++|+++-+. +.+|-+|=.-|-.-+..
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 45678899999999999887 79999999999998773 45567766655554443
No 214
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=31.37 E-value=1e+02 Score=19.68 Aligned_cols=45 Identities=0% Similarity=-0.023 Sum_probs=27.6
Q ss_pred hcchHHHHHHHHHHHhhccCc------HHHHHHHHHHHhhc-Cc-chhhhhhh
Q 041861 25 CALLTRVVEVFEQSMQSATYS------SDVWFHYCNLASEV-PP-DGHRKSEY 69 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~p~S------vdLW~~Yl~f~~~~-~~-~~~~~lf~ 69 (73)
.|+.++|++.+++|+.-.+.. .+++.+-....... +. +++...++
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 799999999999999854332 34555443333333 24 55554443
No 215
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=31.06 E-value=1.1e+02 Score=19.91 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=12.0
Q ss_pred hcchHHHHHHHHHHHhhc
Q 041861 25 CALLTRVVEVFEQSMQSA 42 (73)
Q Consensus 25 ~~~~~~a~~V~erav~~~ 42 (73)
.|+.++|++.+++++...
T Consensus 106 ~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 566777777777776643
No 216
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=29.92 E-value=94 Score=22.14 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHccchHHHHHHHH----hcchHHHHHHHHHHHh----hccCcHH
Q 041861 2 IRLVYNSFLADFHLCYGYWRKAC----CALLTRVVEVFEQSMQ----SATYSSD 47 (73)
Q Consensus 2 ~r~~Y~~fL~~fPl~~~YWkkya----~~~~~~a~~V~erav~----~~p~Svd 47 (73)
+|..|..|+.-+-=+..-|..+. ..+.+.+..-..+|+. +-|.|++
T Consensus 120 LR~~YR~fv~~~~~~~~ly~~w~~~yg~~~r~~v~~Fl~~aL~aDL~s~~psi~ 173 (294)
T 2vj4_A 120 LRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFVEQSLIVDMDSEXPSCN 173 (294)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHSSSCSSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhccCCCCC
Confidence 79999999997776666666666 5667777777777765 3445555
No 217
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=28.00 E-value=78 Score=18.36 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=21.5
Q ss_pred HHHHHccchHHHHHHHH-----hcchHHHHHHHHHHHhhcc
Q 041861 8 SFLADFHLCYGYWRKAC-----CALLTRVVEVFEQSMQSAT 43 (73)
Q Consensus 8 ~fL~~fPl~~~YWkkya-----~~~~~~a~~V~erav~~~p 43 (73)
+||.+|-.--. -|.+ +..+|+...++|.-|.++|
T Consensus 34 ~FLN~F~~sce--~KLa~ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 34 EFLNKFELSTR--NKLSDLNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56777665222 1344 6778888888888888765
No 218
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=25.76 E-value=83 Score=16.75 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=21.5
Q ss_pred HHHHHHHHHc-cchHHHHHHHHhcchHHHHH----HHHHHHhh
Q 041861 4 LVYNSFLADF-HLCYGYWRKACCALLTRVVE----VFEQSMQS 41 (73)
Q Consensus 4 ~~Y~~fL~~f-Pl~~~YWkkya~~~~~~a~~----V~erav~~ 41 (73)
..++.+..+| |.++.|-.++. ++.+.|++ +|-+..++
T Consensus 12 ~af~~l~~~~~~~l~~~~~~~~-~~~~~aeD~vQe~fl~~~~~ 53 (87)
T 1h3l_A 12 ARFERDALEFLDQMYSAALRMT-RNPADAEDLVQETYAKAYAS 53 (87)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH
Confidence 4566666554 77777776665 45555554 45554444
No 219
>2ygu_A Venom allergen 2; hydrophobic cavity, insect odorant binding protein; 2.60A {Solenopsis invicta}
Probab=21.76 E-value=1.5e+02 Score=18.72 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=21.1
Q ss_pred HHHHHHHhhccC----------cHHHHHHHHHHHhhc-----Ccchhhh
Q 041861 33 EVFEQSMQSATY----------SSDVWFHYCNLASEV-----PPDGHRK 66 (73)
Q Consensus 33 ~V~erav~~~p~----------SvdLW~~Yl~f~~~~-----~~~~~~~ 66 (73)
...+.+++.+|- .||.| ||.|.++. ||+.+.+
T Consensus 10 k~i~~C~RTlPK~~N~P~dPL~~VdVw--~Ca~~KrGvfD~p~Pa~Vkk 56 (125)
T 2ygu_A 10 KDVAECLRTLPKCGNQPDDPLARVDVW--HCAMAKRGVYDNPDPAVIKE 56 (125)
T ss_dssp HHHHHHHHHSCCCSSCCSCGGGCHHHH--HHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHhcccccCCCCchhhhcchh--heehhcccccCCCChHHHHH
Confidence 456677777775 46788 67777765 5666554
Done!