Query 041863
Match_columns 197
No_of_seqs 215 out of 1301
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-36 2.2E-41 274.9 12.6 171 1-171 261-496 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.5E-35 5.4E-40 275.0 19.2 196 1-197 296-529 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1E-26 2.2E-31 187.6 2.3 136 1-136 101-284 (287)
4 PRK04841 transcriptional regul 98.6 9.5E-07 2.1E-11 81.8 14.1 161 2-173 122-335 (903)
5 TIGR00635 ruvB Holliday juncti 97.5 0.00043 9.2E-09 56.4 8.0 125 29-155 130-293 (305)
6 PRK00080 ruvB Holliday junctio 97.4 0.00058 1.3E-08 56.4 7.5 125 29-155 151-314 (328)
7 PF05729 NACHT: NACHT domain 97.3 0.00064 1.4E-08 49.7 6.0 68 1-68 81-162 (166)
8 COG2909 MalT ATP-dependent tra 97.0 0.0045 9.8E-08 56.3 9.1 161 2-173 130-341 (894)
9 COG3903 Predicted ATPase [Gene 96.8 0.0002 4.4E-09 59.9 -1.2 169 1-174 88-318 (414)
10 PRK06893 DNA replication initi 96.8 0.003 6.4E-08 49.5 5.4 87 4-92 94-195 (229)
11 PF01637 Arch_ATPase: Archaeal 95.6 0.049 1.1E-06 41.8 6.7 89 2-92 119-226 (234)
12 PF13173 AAA_14: AAA domain 95.4 0.022 4.8E-07 40.3 3.9 59 2-60 62-126 (128)
13 PRK00411 cdc6 cell division co 94.6 0.72 1.6E-05 38.8 11.3 149 2-151 139-358 (394)
14 TIGR00678 holB DNA polymerase 93.8 0.51 1.1E-05 35.5 8.2 83 2-92 97-183 (188)
15 COG3899 Predicted ATPase [Gene 92.8 0.64 1.4E-05 43.5 8.6 120 47-169 210-385 (849)
16 PRK09087 hypothetical protein; 92.7 0.6 1.3E-05 36.5 7.2 84 4-92 90-187 (226)
17 PRK08727 hypothetical protein; 92.7 0.37 8E-06 37.8 5.9 86 4-92 96-196 (233)
18 TIGR03015 pepcterm_ATPase puta 92.3 1.1 2.4E-05 35.5 8.4 91 1-92 123-230 (269)
19 PRK05564 DNA polymerase III su 91.9 1.1 2.4E-05 36.6 8.2 83 4-92 96-182 (313)
20 PRK09112 DNA polymerase III su 91.6 2.5 5.4E-05 35.4 9.9 87 2-92 142-232 (351)
21 TIGR03420 DnaA_homol_Hda DnaA 91.5 0.5 1.1E-05 36.4 5.4 66 4-69 93-172 (226)
22 PRK13342 recombination factor 91.4 0.88 1.9E-05 38.9 7.2 89 1-92 92-188 (413)
23 PRK08084 DNA replication initi 91.2 0.74 1.6E-05 36.1 6.1 86 4-92 100-201 (235)
24 PRK06645 DNA polymerase III su 91.1 1.4 3E-05 38.8 8.2 89 2-92 129-221 (507)
25 TIGR02928 orc1/cdc6 family rep 91.1 2.8 6.2E-05 34.8 9.9 92 1-92 129-238 (365)
26 PRK07003 DNA polymerase III su 90.9 0.74 1.6E-05 42.4 6.5 88 3-92 121-212 (830)
27 PRK12323 DNA polymerase III su 90.8 2 4.4E-05 38.9 9.1 88 3-92 126-217 (700)
28 PRK07471 DNA polymerase III su 90.7 1.6 3.5E-05 36.7 8.0 85 2-92 142-230 (365)
29 COG2256 MGS1 ATPase related to 90.0 1.1 2.4E-05 38.0 6.3 89 1-92 104-204 (436)
30 PRK14961 DNA polymerase III su 89.9 1.7 3.7E-05 36.4 7.6 91 3-95 121-215 (363)
31 PRK14963 DNA polymerase III su 89.9 1.7 3.8E-05 38.2 7.8 89 2-92 117-209 (504)
32 PRK06620 hypothetical protein; 89.6 1.7 3.7E-05 33.6 6.9 84 4-92 88-181 (214)
33 TIGR02397 dnaX_nterm DNA polym 89.3 2.6 5.7E-05 34.8 8.2 88 3-92 119-210 (355)
34 PRK12402 replication factor C 88.7 1.9 4.1E-05 35.3 6.9 87 4-92 128-218 (337)
35 PRK05642 DNA replication initi 87.0 1.6 3.6E-05 34.2 5.3 86 4-92 100-200 (234)
36 PRK05707 DNA polymerase III su 86.0 11 0.00023 31.3 9.8 83 4-92 109-195 (328)
37 PLN03025 replication factor C 85.5 2.9 6.3E-05 34.3 6.3 88 3-92 101-192 (319)
38 PRK07940 DNA polymerase III su 84.9 8.2 0.00018 32.9 8.8 83 3-92 119-205 (394)
39 PRK00440 rfc replication facto 84.7 4.7 0.0001 32.7 7.1 92 3-96 104-199 (319)
40 COG1373 Predicted ATPase (AAA+ 84.6 2.2 4.7E-05 36.4 5.3 143 1-151 94-270 (398)
41 TIGR01242 26Sp45 26S proteasom 84.2 4.6 0.0001 33.8 7.0 70 3-72 217-309 (364)
42 PF02463 SMC_N: RecF/RecN/SMC 83.7 1.1 2.5E-05 34.4 3.0 42 4-45 161-205 (220)
43 PRK04195 replication factor C 83.0 3.6 7.8E-05 35.9 6.1 87 2-92 99-194 (482)
44 PRK14960 DNA polymerase III su 82.7 6 0.00013 36.1 7.3 88 3-92 120-211 (702)
45 PRK13341 recombination factor 82.3 6 0.00013 36.5 7.4 88 2-92 110-209 (725)
46 PRK14962 DNA polymerase III su 81.9 8.3 0.00018 33.7 7.8 89 2-92 118-210 (472)
47 PRK14951 DNA polymerase III su 81.1 11 0.00023 34.2 8.4 91 3-95 126-220 (618)
48 PRK14957 DNA polymerase III su 80.8 10 0.00022 33.8 8.1 89 2-92 120-212 (546)
49 PF00308 Bac_DnaA: Bacterial d 80.7 6.9 0.00015 30.4 6.3 86 4-91 100-199 (219)
50 PRK14959 DNA polymerase III su 80.4 6.7 0.00014 35.5 6.8 92 2-95 120-215 (624)
51 PRK08691 DNA polymerase III su 79.9 3.3 7.2E-05 37.9 4.8 89 2-92 120-212 (709)
52 PRK14964 DNA polymerase III su 79.9 9.3 0.0002 33.6 7.4 90 3-94 118-211 (491)
53 PRK04132 replication factor C 79.8 28 0.0006 32.9 10.7 88 3-92 632-723 (846)
54 PRK14087 dnaA chromosomal repl 79.7 4.9 0.00011 34.9 5.7 89 4-92 209-311 (450)
55 PRK14970 DNA polymerase III su 79.6 7.2 0.00016 32.6 6.6 89 2-92 109-201 (367)
56 PRK14086 dnaA chromosomal repl 78.9 18 0.0004 32.7 9.1 117 4-126 380-510 (617)
57 PRK14956 DNA polymerase III su 78.2 11 0.00023 33.1 7.2 88 3-92 123-214 (484)
58 PRK08451 DNA polymerase III su 78.1 12 0.00026 33.2 7.7 89 2-92 118-210 (535)
59 PRK08769 DNA polymerase III su 78.1 30 0.00064 28.6 9.6 122 3-132 115-245 (319)
60 PRK14955 DNA polymerase III su 77.6 5.4 0.00012 33.9 5.3 89 2-92 128-220 (397)
61 PRK14949 DNA polymerase III su 77.5 10 0.00022 35.8 7.3 89 2-92 120-212 (944)
62 PRK14971 DNA polymerase III su 77.3 12 0.00027 33.8 7.6 88 3-92 123-214 (614)
63 cd00561 CobA_CobO_BtuR ATP:cor 76.5 2.4 5.3E-05 31.3 2.5 37 4-40 98-139 (159)
64 PRK07994 DNA polymerase III su 76.4 8.9 0.00019 34.9 6.5 89 2-92 120-212 (647)
65 KOG0989 Replication factor C, 76.2 6.3 0.00014 32.5 4.9 89 4-94 132-224 (346)
66 PRK06305 DNA polymerase III su 75.3 22 0.00047 30.9 8.4 89 2-92 122-214 (451)
67 PRK06871 DNA polymerase III su 74.8 42 0.00091 27.8 9.6 82 4-92 110-195 (325)
68 PRK14950 DNA polymerase III su 73.4 18 0.00039 32.5 7.6 89 2-92 121-213 (585)
69 PRK14954 DNA polymerase III su 72.7 19 0.0004 32.7 7.5 88 3-92 129-220 (620)
70 PRK09111 DNA polymerase III su 72.6 17 0.00038 32.8 7.3 88 3-92 134-225 (598)
71 PRK14969 DNA polymerase III su 72.0 14 0.00031 32.7 6.6 89 2-92 120-212 (527)
72 TIGR02880 cbbX_cfxQ probable R 71.7 12 0.00025 30.4 5.6 67 3-69 123-208 (284)
73 PRK07764 DNA polymerase III su 71.2 18 0.00039 34.0 7.3 89 4-94 123-215 (824)
74 PF13730 HTH_36: Helix-turn-he 71.0 4.5 9.7E-05 23.7 2.3 49 100-148 2-55 (55)
75 PRK08903 DnaA regulatory inact 70.9 16 0.00034 28.2 6.0 65 4-68 93-169 (227)
76 cd00009 AAA The AAA+ (ATPases 69.9 7.2 0.00016 26.8 3.6 39 2-40 85-131 (151)
77 TIGR01610 phage_O_Nterm phage 68.9 8.7 0.00019 25.6 3.6 65 95-159 17-89 (95)
78 PRK07133 DNA polymerase III su 68.6 28 0.0006 32.3 7.7 88 3-92 120-211 (725)
79 TIGR00362 DnaA chromosomal rep 66.1 20 0.00043 30.4 6.1 87 4-92 202-302 (405)
80 PRK00149 dnaA chromosomal repl 65.3 16 0.00035 31.5 5.5 86 4-92 214-314 (450)
81 COG0593 DnaA ATPase involved i 65.1 62 0.0013 27.8 8.7 68 4-71 178-259 (408)
82 PRK14953 DNA polymerase III su 64.6 54 0.0012 28.8 8.6 91 2-94 120-214 (486)
83 PRK06964 DNA polymerase III su 64.5 24 0.00053 29.5 6.2 65 4-68 135-203 (342)
84 TIGR02881 spore_V_K stage V sp 64.2 24 0.00052 28.0 5.9 67 4-70 108-192 (261)
85 PRK06647 DNA polymerase III su 63.9 51 0.0011 29.6 8.4 88 3-92 121-212 (563)
86 PRK14952 DNA polymerase III su 62.8 52 0.0011 29.7 8.3 88 3-92 120-211 (584)
87 CHL00181 cbbX CbbX; Provisiona 62.3 63 0.0014 26.2 8.1 66 4-69 125-209 (287)
88 PRK05896 DNA polymerase III su 62.2 26 0.00057 31.7 6.2 87 4-92 122-212 (605)
89 PRK14958 DNA polymerase III su 61.9 28 0.00061 30.8 6.4 88 3-92 121-212 (509)
90 PF12802 MarR_2: MarR family; 60.5 7 0.00015 23.3 1.8 53 100-152 2-55 (62)
91 PF13177 DNA_pol3_delta2: DNA 60.2 12 0.00027 27.4 3.4 54 4-57 105-162 (162)
92 PRK12422 chromosomal replicati 59.6 49 0.0011 28.7 7.4 86 4-92 205-305 (445)
93 PRK05563 DNA polymerase III su 59.6 59 0.0013 29.1 8.1 89 2-92 120-212 (559)
94 PRK07399 DNA polymerase III su 59.5 43 0.00094 27.5 6.8 84 3-92 126-213 (314)
95 PRK06090 DNA polymerase III su 59.2 69 0.0015 26.5 7.9 79 4-92 111-193 (319)
96 PRK14088 dnaA chromosomal repl 59.2 35 0.00076 29.5 6.4 86 4-92 197-297 (440)
97 PRK14965 DNA polymerase III su 57.8 37 0.00081 30.5 6.5 88 3-92 121-212 (576)
98 PHA02544 44 clamp loader, smal 56.5 33 0.00071 27.8 5.6 64 3-66 102-170 (316)
99 PRK14948 DNA polymerase III su 55.5 76 0.0016 28.9 8.1 88 3-92 123-214 (620)
100 smart00346 HTH_ICLR helix_turn 55.2 45 0.00098 21.3 5.2 66 107-172 9-75 (91)
101 PRK08058 DNA polymerase III su 55.0 33 0.00072 28.3 5.4 65 4-68 113-181 (329)
102 PRK07993 DNA polymerase III su 52.8 1.3E+02 0.0029 24.9 9.7 82 4-92 111-196 (334)
103 KOG0741 AAA+-type ATPase [Post 52.2 68 0.0015 28.9 6.9 83 4-90 601-704 (744)
104 PRK03992 proteasome-activating 50.2 1.1E+02 0.0024 25.9 8.0 44 28-71 269-317 (389)
105 PTZ00112 origin recognition co 49.3 69 0.0015 30.9 6.8 21 50-70 930-950 (1164)
106 PRK05986 cob(I)alamin adenolsy 48.8 17 0.00038 27.7 2.6 37 4-40 118-159 (191)
107 PF06144 DNA_pol3_delta: DNA p 48.3 97 0.0021 22.3 6.6 89 2-92 58-158 (172)
108 PF02562 PhoH: PhoH-like prote 47.8 22 0.00047 27.5 3.0 34 3-39 121-156 (205)
109 TIGR00708 cobA cob(I)alamin ad 47.3 16 0.00035 27.4 2.2 34 4-40 100-141 (173)
110 TIGR02903 spore_lon_C ATP-depe 45.0 36 0.00078 30.9 4.4 22 49-70 346-367 (615)
111 PRK07132 DNA polymerase III su 43.8 87 0.0019 25.6 6.1 66 3-68 92-161 (299)
112 PRK14700 recombination factor 43.6 59 0.0013 26.7 5.0 65 28-92 6-79 (300)
113 PRK08116 hypothetical protein; 43.1 14 0.0003 29.6 1.4 36 4-39 181-221 (268)
114 TIGR01128 holA DNA polymerase 42.8 1.7E+02 0.0037 23.3 8.2 89 2-92 47-145 (302)
115 COG2109 BtuR ATP:corrinoid ade 40.9 28 0.00061 26.6 2.6 36 4-39 125-165 (198)
116 KOG2028 ATPase related to the 39.4 55 0.0012 28.1 4.3 89 1-92 222-328 (554)
117 TIGR03689 pup_AAA proteasome A 38.5 89 0.0019 27.8 5.7 69 2-70 290-379 (512)
118 PF02572 CobA_CobO_BtuR: ATP:c 37.7 23 0.00049 26.6 1.7 34 4-40 99-140 (172)
119 COG1875 NYN ribonuclease and A 37.3 37 0.00081 28.9 3.0 33 2-37 352-386 (436)
120 PF00004 AAA: ATPase family as 37.1 74 0.0016 21.5 4.2 11 2-12 59-69 (132)
121 COG0396 sufC Cysteine desulfur 36.7 34 0.00074 27.1 2.6 47 3-51 164-216 (251)
122 cd03241 ABC_RecN RecN ATPase i 35.2 1.2E+02 0.0027 24.1 5.7 41 4-44 195-238 (276)
123 PRK08181 transposase; Validate 35.2 21 0.00045 28.8 1.2 36 4-39 170-209 (269)
124 CHL00176 ftsH cell division pr 34.5 2.8E+02 0.0061 25.4 8.4 70 2-71 276-368 (638)
125 PF02082 Rrf2: Transcriptional 32.7 39 0.00084 21.6 2.0 55 104-158 9-67 (83)
126 PRK08699 DNA polymerase III su 31.7 1.1E+02 0.0024 25.3 5.0 64 5-68 117-184 (325)
127 PF01695 IstB_IS21: IstB-like 30.9 11 0.00023 28.3 -1.0 9 4-12 111-119 (178)
128 TIGR01241 FtsH_fam ATP-depende 30.6 3.2E+02 0.0069 23.9 8.0 43 28-70 192-239 (495)
129 PF07693 KAP_NTPase: KAP famil 30.1 2.2E+02 0.0048 22.9 6.6 42 1-44 172-219 (325)
130 PF10443 RNA12: RNA12 protein; 30.0 3.7E+02 0.0081 23.4 8.4 65 2-70 149-230 (431)
131 PRK06921 hypothetical protein; 29.6 29 0.00062 27.8 1.2 7 4-10 180-186 (266)
132 TIGR00611 recf recF protein. A 29.4 49 0.0011 27.8 2.6 38 3-42 304-344 (365)
133 PRK10536 hypothetical protein; 29.4 44 0.00095 26.9 2.2 33 3-38 178-212 (262)
134 PRK10141 DNA-binding transcrip 28.6 1.3E+02 0.0029 20.9 4.3 34 135-168 47-83 (117)
135 PRK07452 DNA polymerase III su 27.6 3.3E+02 0.0072 22.1 7.6 88 3-92 63-164 (326)
136 PTZ00454 26S protease regulato 27.4 3.6E+02 0.0078 23.0 7.5 42 28-69 283-329 (398)
137 PF03849 Tfb2: Transcription f 27.4 1.5E+02 0.0032 25.1 5.1 71 98-169 25-101 (366)
138 PF00486 Trans_reg_C: Transcri 27.2 57 0.0012 20.0 2.1 40 100-139 5-46 (77)
139 smart00862 Trans_reg_C Transcr 27.0 1.1E+02 0.0024 18.6 3.4 32 101-132 6-39 (78)
140 cd03251 ABCC_MsbA MsbA is an e 26.8 1.4E+02 0.003 22.9 4.6 45 4-53 159-209 (234)
141 cd03249 ABC_MTABC3_MDL1_MDL2 M 26.3 1.4E+02 0.003 23.0 4.5 45 4-53 160-210 (238)
142 cd03244 ABCC_MRP_domain2 Domai 26.2 1.4E+02 0.0031 22.6 4.5 48 4-53 160-210 (221)
143 PRK06526 transposase; Provisio 25.9 38 0.00083 26.9 1.3 35 4-39 162-201 (254)
144 PRK11569 transcriptional repre 25.7 1.7E+02 0.0037 23.3 5.0 53 116-168 41-94 (274)
145 PRK06835 DNA replication prote 25.6 37 0.00081 28.2 1.2 35 4-38 249-288 (329)
146 PF14516 AAA_35: AAA-like doma 25.6 1.7E+02 0.0036 24.2 5.1 39 48-92 193-231 (331)
147 PRK11920 rirA iron-responsive 25.4 96 0.0021 22.5 3.3 49 104-152 9-58 (153)
148 COG2812 DnaX DNA polymerase II 25.4 4.9E+02 0.011 23.3 8.7 87 4-92 122-212 (515)
149 PRK07413 hypothetical protein; 25.1 63 0.0014 27.5 2.5 35 4-38 308-347 (382)
150 PRK08485 DNA polymerase III su 24.6 3.4E+02 0.0073 21.1 7.1 89 6-97 59-164 (206)
151 PRK07276 DNA polymerase III su 24.2 2.4E+02 0.0051 23.1 5.6 64 3-67 106-173 (290)
152 cd03247 ABCC_cytochrome_bd The 24.1 1.6E+02 0.0034 21.5 4.3 49 3-53 118-169 (178)
153 COG0497 RecN ATPase involved i 23.8 2.8E+02 0.0061 25.0 6.3 42 4-45 456-500 (557)
154 cd03369 ABCC_NFT1 Domain 2 of 23.8 1.6E+02 0.0035 22.1 4.4 48 4-53 146-196 (207)
155 TIGR02640 gas_vesic_GvpN gas v 23.5 3.1E+02 0.0066 21.7 6.1 67 3-69 107-198 (262)
156 TIGR02858 spore_III_AA stage I 23.2 1.4E+02 0.0031 24.0 4.1 37 4-43 197-233 (270)
157 PRK09834 DNA-binding transcrip 23.0 2.1E+02 0.0045 22.7 5.0 54 113-166 21-75 (263)
158 PRK07413 hypothetical protein; 23.0 76 0.0017 27.0 2.6 37 4-40 128-169 (382)
159 cd03253 ABCC_ATM1_transporter 22.2 1.8E+02 0.0039 22.2 4.5 46 3-53 157-208 (236)
160 PF13412 HTH_24: Winged helix- 22.2 67 0.0014 17.9 1.5 46 103-149 3-48 (48)
161 PRK09183 transposase/IS protei 22.0 45 0.00097 26.6 1.0 35 4-39 167-206 (259)
162 smart00419 HTH_CRP helix_turn_ 22.0 1E+02 0.0022 16.7 2.4 23 136-159 26-48 (48)
163 PRK12377 putative replication 21.9 57 0.0012 25.9 1.6 8 4-11 166-173 (248)
164 PRK11014 transcriptional repre 21.5 1E+02 0.0022 21.9 2.7 49 104-152 9-59 (141)
165 cd00383 trans_reg_C Effector d 21.1 1.7E+02 0.0037 18.6 3.6 39 101-139 24-64 (95)
166 COG1959 Predicted transcriptio 20.8 80 0.0017 22.9 2.1 49 104-152 9-59 (150)
167 PRK05022 anaerobic nitric oxid 20.5 4.4E+02 0.0095 23.2 7.0 35 5-39 285-332 (509)
168 COG1414 IclR Transcriptional r 20.4 2.3E+02 0.0049 22.3 4.7 63 108-170 9-72 (246)
169 cd03288 ABCC_SUR2 The SUR doma 20.2 2E+02 0.0044 22.5 4.4 45 4-53 177-227 (257)
170 COG1484 DnaC DNA replication p 20.0 52 0.0011 26.2 1.0 9 4-12 170-178 (254)
171 PRK13695 putative NTPase; Prov 20.0 3.1E+02 0.0068 19.8 5.2 37 4-43 99-140 (174)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=274.86 Aligned_cols=171 Identities=26% Similarity=0.334 Sum_probs=156.9
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHh-cCCceeEecCCCChHHHHHHHHhhcCCCC-CCChh
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN-WEVRKIYEIEALEYHHALDLFSRHAFKRN-HLDVG 78 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~-~~~~~ 78 (197)
|||||||||||+..+|+.+..++|...+||+|++|||++.|+.. +++...+++..|++++||+||.+.+|... ...+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 79999999999999999999999988889999999999999999 78888999999999999999999998774 33345
Q ss_pred HHHHHHHHHHHccC---------------------------------------------cccccccCCCHHhHHHHHHhh
Q 041863 79 YEKLSSNVMKCAQG---------------------------------------------VLKISYDGLDDKEKNIFLDVA 113 (197)
Q Consensus 79 ~~~~~~~i~~~c~g---------------------------------------------~l~~s~~~L~~~~k~~fl~la 113 (197)
.+.+|++++++|+| ++++||+.||++.|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 89999999999999 889999999999999999999
Q ss_pred cCCCC--CCHHHHHHHHHHcCCCc------------ccchHHHhhCcCceeecC----CcEEecHHHHHHHHHHHh
Q 041863 114 CFFQG--QDVNLVMNFLNASGFYP------------EIGISFLVDKSLIVISNN----NKITMHDLKQEFGQEIIQ 171 (197)
Q Consensus 114 ~fp~~--~~~~~l~~~w~~~g~~~------------~~~l~~L~~~sll~~~~~----~~~~mHdlv~~~a~~~~~ 171 (197)
+||++ ++.+.++.+|+|||++. ..++++|++++|++.... ..|+|||+|||+|..++.
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 99999 59999999999999763 457999999999998753 349999999999999999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.5e-35 Score=275.01 Aligned_cols=196 Identities=40% Similarity=0.625 Sum_probs=180.8
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEecCCCChHHHHHHHHhhcCCCCCCChhHH
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYE 80 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~ 80 (197)
||+||||||||+..+|+.+.....+.++||+||||||++.++..++...+|.++.|+.++||+||+++||+...+++++.
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 68999999999999999998877777899999999999999988777889999999999999999999998877777889
Q ss_pred HHHHHHHHHccC-------------------------------------cccccccCCCH-HhHHHHHHhhcCCCCCCHH
Q 041863 81 KLSSNVMKCAQG-------------------------------------VLKISYDGLDD-KEKNIFLDVACFFQGQDVN 122 (197)
Q Consensus 81 ~~~~~i~~~c~g-------------------------------------~l~~s~~~L~~-~~k~~fl~la~fp~~~~~~ 122 (197)
+++++|+++||| +|++||+.|++ ..|.||+++|+|+.+.+.+
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 999999999999 89999999987 5999999999999999888
Q ss_pred HHHHHHHHcCCCcccchHHHhhCcCceeecCCcEEecHHHHHHHHHHHhhhcCCCCCcccccCchhHHHHHhhCC
Q 041863 123 LVMNFLNASGFYPEIGISFLVDKSLIVISNNNKITMHDLKQEFGQEIIQEESINPENRSRLWHHKDTYEVLTYNT 197 (197)
Q Consensus 123 ~l~~~w~~~g~~~~~~l~~L~~~sll~~~~~~~~~mHdlv~~~a~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~ 197 (197)
.+..++...++.++..++.|+++||++.. .++|.|||++|+||++++++++.++++++++|+++|+++++.+++
T Consensus 456 ~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred HHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCc
Confidence 87777777888888899999999999986 578999999999999999999888999999999999999998764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=1e-26 Score=187.56 Aligned_cols=136 Identities=29% Similarity=0.442 Sum_probs=107.6
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCC-ceeEecCCCChHHHHHHHHhhcCCCC-CCChh
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEV-RKIYEIEALEYHHALDLFSRHAFKRN-HLDVG 78 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~-~~~~~l~~L~~~~a~~L~~~~a~~~~-~~~~~ 78 (197)
|++||||||||+...|+.+...++..++||+||+|||+..++..++. ...+++++|+.++|++||.+.++... ...+.
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47999999999999998888777766789999999999998877654 67899999999999999999987665 33345
Q ss_pred HHHHHHHHHHHccC--------------------------------------------cccccccCCCHHhHHHHHHhhc
Q 041863 79 YEKLSSNVMKCAQG--------------------------------------------VLKISYDGLDDKEKNIFLDVAC 114 (197)
Q Consensus 79 ~~~~~~~i~~~c~g--------------------------------------------~l~~s~~~L~~~~k~~fl~la~ 114 (197)
....+++|+++|+| ++.+||+.||++.|+||+|||+
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSI 260 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcC
Confidence 66789999999999 7889999999999999999999
Q ss_pred CCCC--CCHHHHHHHHHHcCCCcc
Q 041863 115 FFQG--QDVNLVMNFLNASGFYPE 136 (197)
Q Consensus 115 fp~~--~~~~~l~~~w~~~g~~~~ 136 (197)
||++ ++.+.++++|.++|++..
T Consensus 261 f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCceECHHHHHHHHHHCCCCcc
Confidence 9998 589999999999998754
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=9.5e-07 Score=81.77 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=105.8
Q ss_pred EEEEEEeCCCChH------HHHHhhccCCCCCCCcEEEEEeCChHHHH--hc-CCceeEecC----CCChHHHHHHHHhh
Q 041863 2 KVLIVFDDVTCFT------QLESLIGSLDWLTPVSRIIITTRNKQVLR--NW-EVRKIYEIE----ALEYHHALDLFSRH 68 (197)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~iivTTR~~~v~~--~~-~~~~~~~l~----~L~~~~a~~L~~~~ 68 (197)
+++|||||+...+ .+..+.... .++.++|||||...-.. .. -......++ +|+.+|+.++|...
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 5899999996542 344444432 35678889999842111 10 112344555 89999999999875
Q ss_pred cCCCCCCChhHHHHHHHHHHHccC-------------------------------------cccccccCCCHHhHHHHHH
Q 041863 69 AFKRNHLDVGYEKLSSNVMKCAQG-------------------------------------VLKISYDGLDDKEKNIFLD 111 (197)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~g-------------------------------------~l~~s~~~L~~~~k~~fl~ 111 (197)
.+... + .....+|...|+| ...-.++.||++.++.++.
T Consensus 199 ~~~~~--~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 199 LSSPI--E---AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred cCCCC--C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 54321 1 2345667777777 0011267889999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCcee-ec-C-CcEEecHHHHHHHHHHHhhh
Q 041863 112 VACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVI-SN-N-NKITMHDLKQEFGQEIIQEE 173 (197)
Q Consensus 112 la~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~-~~-~-~~~~mHdlv~~~a~~~~~~e 173 (197)
+|+++ .++.+.+..+... -.++..+++|.+.+++.. .+ + ..|+.|++++++.+.....+
T Consensus 274 ~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 274 CSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred hcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99986 6676655555432 224667999999999753 33 2 35999999999999876444
No 5
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.54 E-value=0.00043 Score=56.39 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=85.5
Q ss_pred CcEEEEEeCChHHHHhc--CCceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC--------------
Q 041863 29 VSRIIITTRNKQVLRNW--EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG-------------- 92 (197)
Q Consensus 29 gs~iivTTR~~~v~~~~--~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g-------------- 92 (197)
.+-|..||+...+.... .....+.+++++.++..+++.+.+...... -..+....|++.|+|
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45556667754433321 113467899999999999998876533211 123556778888888
Q ss_pred --------------------cccccccCCCHHhHHHHH-HhhcCCCC-CCHHHHHHHHHHcCCCcccchH-HHhhCcCce
Q 041863 93 --------------------VLKISYDGLDDKEKNIFL-DVACFFQG-QDVNLVMNFLNASGFYPEIGIS-FLVDKSLIV 149 (197)
Q Consensus 93 --------------------~l~~s~~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~g~~~~~~l~-~L~~~sll~ 149 (197)
.+..+|..|++..+..+. .++.+..+ +..+.+......+...++..++ .|++++|+.
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 345577888887777666 55666554 6778877777777667777788 699999998
Q ss_pred eecCCc
Q 041863 150 ISNNNK 155 (197)
Q Consensus 150 ~~~~~~ 155 (197)
....|+
T Consensus 288 ~~~~g~ 293 (305)
T TIGR00635 288 RTPRGR 293 (305)
T ss_pred cCCchh
Confidence 665555
No 6
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.43 E-value=0.00058 Score=56.38 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=87.7
Q ss_pred CcEEEEEeCChHHHHhc--CCceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC--------------
Q 041863 29 VSRIIITTRNKQVLRNW--EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG-------------- 92 (197)
Q Consensus 29 gs~iivTTR~~~v~~~~--~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g-------------- 92 (197)
.+-|..||+...+.... .....+.+++++.++..+++.+.+...... -..+....|++.|+|
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 34455666644333221 113468899999999999999876543321 123567888899998
Q ss_pred --------------------cccccccCCCHHhHHHHH-HhhcCCCC-CCHHHHHHHHHHcCCCcccchH-HHhhCcCce
Q 041863 93 --------------------VLKISYDGLDDKEKNIFL-DVACFFQG-QDVNLVMNFLNASGFYPEIGIS-FLVDKSLIV 149 (197)
Q Consensus 93 --------------------~l~~s~~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~g~~~~~~l~-~L~~~sll~ 149 (197)
.+...+..|++..+..+. .+..|+.+ +..+.+...+..+...++..++ .|++.+|++
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcc
Confidence 345667888888887775 77777766 6888888887776666777788 999999998
Q ss_pred eecCCc
Q 041863 150 ISNNNK 155 (197)
Q Consensus 150 ~~~~~~ 155 (197)
....|+
T Consensus 309 ~~~~gr 314 (328)
T PRK00080 309 RTPRGR 314 (328)
T ss_pred cCCchH
Confidence 665554
No 7
>PF05729 NACHT: NACHT domain
Probab=97.32 E-value=0.00064 Score=49.66 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=46.7
Q ss_pred CEEEEEEeCCCChHH---------HHHhhc-cCCC-CCCCcEEEEEeCChHH---HHhcCCceeEecCCCChHHHHHHHH
Q 041863 1 MKVLIVFDDVTCFTQ---------LESLIG-SLDW-LTPVSRIIITTRNKQV---LRNWEVRKIYEIEALEYHHALDLFS 66 (197)
Q Consensus 1 kr~LlVLDdv~~~~~---------~~~l~~-~~~~-~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~a~~L~~ 66 (197)
++++||+|++++... +..++. .++. ..+++++|+|||.... .........+.+.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 478999999975532 222221 1111 2368999999998776 2333444689999999999999987
Q ss_pred hh
Q 041863 67 RH 68 (197)
Q Consensus 67 ~~ 68 (197)
++
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 65
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.02 E-value=0.0045 Score=56.27 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=100.2
Q ss_pred EEEEEEeCCCCh------HHHHHhhccCCCCCCCcEEEEEeCChHHHHhcC---CceeEecC----CCChHHHHHHHHhh
Q 041863 2 KVLIVFDDVTCF------TQLESLIGSLDWLTPVSRIIITTRNKQVLRNWE---VRKIYEIE----ALEYHHALDLFSRH 68 (197)
Q Consensus 2 r~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~---~~~~~~l~----~L~~~~a~~L~~~~ 68 (197)
...+||||..-. .-++.|+...| ++-.+|+|||..--..... .....+++ .++.+|+-++|...
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~ 206 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR 206 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC---CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc
Confidence 468999998633 22566665444 6889999999864322110 11233333 37899999999875
Q ss_pred cCCCCCCChhHHHHHHHHHHHccC-----------------------------------cccccccCCCHHhHHHHHHhh
Q 041863 69 AFKRNHLDVGYEKLSSNVMKCAQG-----------------------------------VLKISYDGLDDKEKNIFLDVA 113 (197)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~g-----------------------------------~l~~s~~~L~~~~k~~fl~la 113 (197)
-+..-+ ....+.+.+.-+| ..+--++.||++.|..++-+|
T Consensus 207 ~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~s 281 (894)
T COG2909 207 GSLPLD-----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTS 281 (894)
T ss_pred CCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 422211 1234455555555 233457889999999999999
Q ss_pred cCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCcee-ec--CCcEEecHHHHHHHHHHHhhh
Q 041863 114 CFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVI-SN--NNKITMHDLKQEFGQEIIQEE 173 (197)
Q Consensus 114 ~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~-~~--~~~~~mHdlv~~~a~~~~~~e 173 (197)
+++.- . ..++.-...+ ......+++|.+++|+-. .+ ++.|+.|.+..||.+...+.+
T Consensus 282 vl~~f-~-~eL~~~Ltg~-~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 282 VLSRF-N-DELCNALTGE-ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred hHHHh-h-HHHHHHHhcC-CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 98531 1 2222222111 112345899999999863 22 445999999999999877665
No 9
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.78 E-value=0.0002 Score=59.86 Aligned_cols=169 Identities=21% Similarity=0.297 Sum_probs=116.2
Q ss_pred CEEEEEEeCCCChH-HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEecCCCChH-HHHHHHHhhcCCCC---CC
Q 041863 1 MKVLIVFDDVTCFT-QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEIEALEYH-HALDLFSRHAFKRN---HL 75 (197)
Q Consensus 1 kr~LlVLDdv~~~~-~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~L~~~~a~~~~---~~ 75 (197)
+|.++|+||..+.. +-..+.-.+..+.+.-.|+.|+|..... .......+++|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 46788999987653 3333333333345566789999875432 24567788888865 78899877654322 11
Q ss_pred ChhHHHHHHHHHHHccC-----------------------------------------------cccccccCCCHHhHHH
Q 041863 76 DVGYEKLSSNVMKCAQG-----------------------------------------------VLKISYDGLDDKEKNI 108 (197)
Q Consensus 76 ~~~~~~~~~~i~~~c~g-----------------------------------------------~l~~s~~~L~~~~k~~ 108 (197)
.......+.+|+.+..| .+.+||.-|..-.+-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 22345567777777777 8999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHcCCCc--c-----cchHHHhhCcCceeec-CC--cEEecHHHHHHHHHHHhhhc
Q 041863 109 FLDVACFFQGQDVNLVMNFLNASGFYP--E-----IGISFLVDKSLIVISN-NN--KITMHDLKQEFGQEIIQEES 174 (197)
Q Consensus 109 fl~la~fp~~~~~~~l~~~w~~~g~~~--~-----~~l~~L~~~sll~~~~-~~--~~~mHdlv~~~a~~~~~~e~ 174 (197)
|..++.|...|+.. ...|.+-|-.. + ..+..|++++++...+ .+ +|+.-+-.|.|+..+.++..
T Consensus 245 ~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 245 FGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred hcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998776 34455544332 2 2367899999998665 22 38888888888888766654
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=96.77 E-value=0.003 Score=49.54 Aligned_cols=87 Identities=13% Similarity=0.282 Sum_probs=54.3
Q ss_pred EEEEeCCCCh---HHHHH-hhccCCCC-CCCcEEEE-EeCC---------hHHHHhcCCceeEecCCCChHHHHHHHHhh
Q 041863 4 LIVFDDVTCF---TQLES-LIGSLDWL-TPVSRIII-TTRN---------KQVLRNWEVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~-l~~~~~~~-~~gs~iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
+|+|||++.. ..|+. +...++.. ..|+.+|+ |+.. +.+...+.....+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999863 34542 22222111 23555655 4443 355555555668899999999999999988
Q ss_pred cCCCCCCChhHHHHHHHHHHHccC
Q 041863 69 AFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
+....-.. -.++..-|++.++|
T Consensus 174 a~~~~l~l--~~~v~~~L~~~~~~ 195 (229)
T PRK06893 174 AYQRGIEL--SDEVANFLLKRLDR 195 (229)
T ss_pred HHHcCCCC--CHHHHHHHHHhccC
Confidence 76433211 13556677777776
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.59 E-value=0.049 Score=41.80 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=45.8
Q ss_pred EEEEEEeCCCChH-----------HHHHhhccCCCCCCCcEEEEEeCChHHHHh--------cCCceeEecCCCChHHHH
Q 041863 2 KVLIVFDDVTCFT-----------QLESLIGSLDWLTPVSRIIITTRNKQVLRN--------WEVRKIYEIEALEYHHAL 62 (197)
Q Consensus 2 r~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~iivTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~ 62 (197)
+++||+||+.... .+..+........+.+ +++++........ .+....+.+++|+.++++
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~ 197 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAR 197 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHH
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHH
Confidence 4899999997554 1333333322223334 5555554544433 123345999999999999
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 63 DLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 63 ~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
+++.......... +.-....++|...+||
T Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 198 EFLKELFKELIKL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp HHHHHHHHCC-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc-cCCHHHHHHHHHHhCC
Confidence 9998854222111 1123456888888888
No 12
>PF13173 AAA_14: AAA domain
Probab=95.44 E-value=0.022 Score=40.25 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=44.4
Q ss_pred EEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhc------CCceeEecCCCChHH
Q 041863 2 KVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNW------EVRKIYEIEALEYHH 60 (197)
Q Consensus 2 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~ 60 (197)
+.+|+||++....+|......+-+.++..+|++|+.+......- +....+.+.||+..|
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 46899999998888877776665555678999999988776431 223467899998776
No 13
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.58 E-value=0.72 Score=38.83 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=79.8
Q ss_pred EEEEEEeCCCChH------HHHHhhccCCCCCCCc--EEEEEeCChHHHHhcC-------CceeEecCCCChHHHHHHHH
Q 041863 2 KVLIVFDDVTCFT------QLESLIGSLDWLTPVS--RIIITTRNKQVLRNWE-------VRKIYEIEALEYHHALDLFS 66 (197)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~~~~gs--~iivTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~L~~ 66 (197)
..+||||+++... .+..+..... ..+++ .+|.++.+........ ....+.+++.+.++..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 5789999998642 3444443222 11233 3666666554333221 12467899999999999988
Q ss_pred hhcCC---CCCCCh-hHHHHHHHHHHHccC--------------------------------------cccccccCCCHH
Q 041863 67 RHAFK---RNHLDV-GYEKLSSNVMKCAQG--------------------------------------VLKISYDGLDDK 104 (197)
Q Consensus 67 ~~a~~---~~~~~~-~~~~~~~~i~~~c~g--------------------------------------~l~~s~~~L~~~ 104 (197)
.++.. ....++ ....+++......|. .+.-.+..||.+
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~ 297 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLH 297 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 76521 111121 222222222111121 334457788888
Q ss_pred hHHHHHHhhcCC----CCCCHHHHHHH----HHHcCCCc------ccchHHHhhCcCceee
Q 041863 105 EKNIFLDVACFF----QGQDVNLVMNF----LNASGFYP------EIGISFLVDKSLIVIS 151 (197)
Q Consensus 105 ~k~~fl~la~fp----~~~~~~~l~~~----w~~~g~~~------~~~l~~L~~~sll~~~ 151 (197)
.|..+..++... ..+....+... ....|..+ ..++..|.+.++|...
T Consensus 298 ~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 298 EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 877776655432 22444444322 11223322 2478999999999864
No 14
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.84 E-value=0.51 Score=35.48 Aligned_cols=83 Identities=16% Similarity=0.283 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....+.+.+|++|++.. +...+ .....+.+.+++.++..+.+.+. + -.
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i~- 170 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---IS- 170 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---CC-
Confidence 447899999765 346666665554445677777776542 22221 23468999999999999988876 1 11
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
.+.+..|+..+||
T Consensus 171 --~~~~~~i~~~~~g 183 (188)
T TIGR00678 171 --EEAAELLLALAGG 183 (188)
T ss_pred --HHHHHHHHHHcCC
Confidence 3567788888887
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.84 E-value=0.64 Score=43.49 Aligned_cols=120 Identities=13% Similarity=0.131 Sum_probs=78.7
Q ss_pred CceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC----------------------------------
Q 041863 47 VRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG---------------------------------- 92 (197)
Q Consensus 47 ~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g---------------------------------- 92 (197)
....+.|.||+..+.-.+....-......+ .+..+.|.++-.|
T Consensus 210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 210 NITTITLAPLSRADTNQLVAATLGCTKLLP---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred ceeEEecCcCchhhHHHHHHHHhCCccccc---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 346899999999999998887654323222 3556677777777
Q ss_pred -------c----ccccccCCCHHhHHHHHHhhcCCCCCCHHHHHHHHHHcCCC-cccchHHHhhCcCceeec---CC---
Q 041863 93 -------V----LKISYDGLDDKEKNIFLDVACFFQGQDVNLVMNFLNASGFY-PEIGISFLVDKSLIVISN---NN--- 154 (197)
Q Consensus 93 -------~----l~~s~~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~~g~~-~~~~l~~L~~~sll~~~~---~~--- 154 (197)
. +..-.+.||...|+.+-..||+...|+.+.|..++...... +...++.|....++-.++ .+
T Consensus 287 ~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~ 366 (849)
T COG3899 287 GILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNV 366 (849)
T ss_pred CCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceecccccccccccc
Confidence 1 44567789999999999999999889988888888753322 223344444443333221 11
Q ss_pred -cE---EecHHHHHHHHHH
Q 041863 155 -KI---TMHDLKQEFGQEI 169 (197)
Q Consensus 155 -~~---~mHdlv~~~a~~~ 169 (197)
.. -.|+.+++.|-..
T Consensus 367 ~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 367 DIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred chhhHHhhHHHHHHHHhcc
Confidence 12 4688888777543
No 16
>PRK09087 hypothetical protein; Validated
Probab=92.72 E-value=0.6 Score=36.50 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=51.3
Q ss_pred EEEEeCCCCh----HHHHHhhccCCCCCCCcEEEEEeCC---------hHHHHhcCCceeEecCCCChHHHHHHHHhhcC
Q 041863 4 LIVFDDVTCF----TQLESLIGSLDWLTPVSRIIITTRN---------KQVLRNWEVRKIYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 4 LlVLDdv~~~----~~~~~l~~~~~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~L~~~~a~ 70 (197)
+|++||+... +.+-.+..... ..|..||+||+. ++....+....++++.+++.++-.+++.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 6889999532 22222222222 246779998874 33333344557899999999999999988764
Q ss_pred CCC-CCChhHHHHHHHHHHHccC
Q 041863 71 KRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 71 ~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
... ..+ +++..-|++.+.|
T Consensus 168 ~~~~~l~---~ev~~~La~~~~r 187 (226)
T PRK09087 168 DRQLYVD---PHVVYYLVSRMER 187 (226)
T ss_pred HcCCCCC---HHHHHHHHHHhhh
Confidence 322 122 3455666666665
No 17
>PRK08727 hypothetical protein; Validated
Probab=92.66 E-value=0.37 Score=37.79 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred EEEEeCCCCh---HHHH-HhhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQLE-SLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+||+||+... ..|+ .+...++. ..+|..||+||+..- +...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 7999999633 2232 22221111 124667999998532 22222234588999999999999999866
Q ss_pred CCCC-CCChhHHHHHHHHHHHccC
Q 041863 70 FKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
.... ..+ .+...-|++.++|
T Consensus 176 ~~~~l~l~---~e~~~~La~~~~r 196 (233)
T PRK08727 176 QRRGLALD---EAAIDWLLTHGER 196 (233)
T ss_pred HHcCCCCC---HHHHHHHHHhCCC
Confidence 4322 222 3556677777776
No 18
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.31 E-value=1.1 Score=35.48 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=51.8
Q ss_pred CEEEEEEeCCCChH--HHHHhh---ccCCCCCCCcEEEEEeCChHHHHhcC----------CceeEecCCCChHHHHHHH
Q 041863 1 MKVLIVFDDVTCFT--QLESLI---GSLDWLTPVSRIIITTRNKQVLRNWE----------VRKIYEIEALEYHHALDLF 65 (197)
Q Consensus 1 kr~LlVLDdv~~~~--~~~~l~---~~~~~~~~gs~iivTTR~~~v~~~~~----------~~~~~~l~~L~~~~a~~L~ 65 (197)
++.+||+||++... .++.+. ...........|++|.... ...... ....+.+++++.++..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 46799999998753 344433 2111112233455665432 221111 1346789999999999988
Q ss_pred HhhcCCCC--CCChhHHHHHHHHHHHccC
Q 041863 66 SRHAFKRN--HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 66 ~~~a~~~~--~~~~~~~~~~~~i~~~c~g 92 (197)
........ ....-..+..+.|.+.++|
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G 230 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRG 230 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCC
Confidence 76543211 1111124678889999998
No 19
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.93 E-value=1.1 Score=36.64 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=56.0
Q ss_pred EEEEeCCC--ChHHHHHhhccCCCCCCCcEEEEEeCChHHH-Hhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVT--CFTQLESLIGSLDWLTPVSRIIITTRNKQVL-RNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~--~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
++|+|+++ +...++.|+..+....+++.+|++|.+.+.. +.+ .....+.+.+++.++....+..... . ..
T Consensus 96 v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-~--~~--- 169 (313)
T PRK05564 96 VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-D--IK--- 169 (313)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc-C--CC---
Confidence 56667665 4456888887777666788899888776533 211 2346889999999999888865431 1 11
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
...+..++..++|
T Consensus 170 ~~~~~~l~~~~~g 182 (313)
T PRK05564 170 EEEKKSAIAFSDG 182 (313)
T ss_pred HHHHHHHHHHcCC
Confidence 2335677888888
No 20
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=2.5 Score=35.39 Aligned_cols=87 Identities=8% Similarity=0.171 Sum_probs=53.4
Q ss_pred EEEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++..+ ..+.|+..+....++..+|++|.+. .+...+ +....+.+.+++.++..+.+........
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---- 217 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---- 217 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----
Confidence 3478999998653 3555555444333445555555444 232222 2336899999999999999987421111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-..+....++..++|
T Consensus 218 ~~~~~~~~i~~~s~G 232 (351)
T PRK09112 218 SDGEITEALLQRSKG 232 (351)
T ss_pred CCHHHHHHHHHHcCC
Confidence 113446788899999
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.54 E-value=0.5 Score=36.42 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=39.1
Q ss_pred EEEEeCCCChH---H-HHHhhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCFT---Q-LESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+||+||++... . .+.+...+.. ...+..+|+||+... +...+.....+++++++.++-..++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 78999997542 2 2333322211 113457888887532 12222224578899999988888887643
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.41 E-value=0.88 Score=38.87 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=53.2
Q ss_pred CEEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEE--EeCChHHH---HhcCCceeEecCCCChHHHHHHHHhhcCCCC
Q 041863 1 MKVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIII--TTRNKQVL---RNWEVRKIYEIEALEYHHALDLFSRHAFKRN 73 (197)
Q Consensus 1 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~ 73 (197)
++.+|++|+++.. .+.+.|++.+. .|..+++ ||.+.... ...+....+.+.+++.++..+++.+......
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 3568999999865 35566666544 2444444 34443211 1112236789999999999999987542210
Q ss_pred -CCChhHHHHHHHHHHHccC
Q 041863 74 -HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 74 -~~~~~~~~~~~~i~~~c~g 92 (197)
....-..+....|++.|+|
T Consensus 169 ~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 169 RGLVELDDEALDALARLANG 188 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCC
Confidence 0001123556778888888
No 23
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.16 E-value=0.74 Score=36.14 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=51.6
Q ss_pred EEEEeCCCCh---HHHHHhh-ccCCC-CCCC-cEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhh
Q 041863 4 LIVFDDVTCF---TQLESLI-GSLDW-LTPV-SRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~-~~~~~-~~~g-s~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
+|++||+... .+|+..+ ..++. ...| .++|+||+... +...+....++.+.+++.++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999643 2343221 11110 0123 46999997552 2333344568999999999999998875
Q ss_pred cCCCC-CCChhHHHHHHHHHHHccC
Q 041863 69 AFKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 69 a~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
+.... ..+ +++..-|++.+.|
T Consensus 180 a~~~~~~l~---~~v~~~L~~~~~~ 201 (235)
T PRK08084 180 ARLRGFELP---EDVGRFLLKRLDR 201 (235)
T ss_pred HHHcCCCCC---HHHHHHHHHhhcC
Confidence 54322 222 3566777777776
No 24
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=1.4 Score=38.84 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEE-EeCChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIII-TTRNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++.. ..++.|+..+....+.+.+|+ ||+...+...+ .....+.+.+++.++..+.+...+.......
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i- 207 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT- 207 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-
Confidence 457899999864 457777765554445666554 55544544433 2345789999999999999887664332111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....|+..++|
T Consensus 208 -e~eAL~~Ia~~s~G 221 (507)
T PRK06645 208 -DIEALRIIAYKSEG 221 (507)
T ss_pred -CHHHHHHHHHHcCC
Confidence 13456778888988
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.09 E-value=2.8 Score=34.78 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=48.5
Q ss_pred CEEEEEEeCCCChH-----HHHHhhccC-CCCC--CCcEEEEEeCChHHHHhcC-------CceeEecCCCChHHHHHHH
Q 041863 1 MKVLIVFDDVTCFT-----QLESLIGSL-DWLT--PVSRIIITTRNKQVLRNWE-------VRKIYEIEALEYHHALDLF 65 (197)
Q Consensus 1 kr~LlVLDdv~~~~-----~~~~l~~~~-~~~~--~gs~iivTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~L~ 65 (197)
++++||||+++... .+..+.... .... ....+|.+|........+. ....+.+++.+.++..+++
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 36789999998661 133333221 0111 2334555555443322211 1246789999999999999
Q ss_pred HhhcC---CCCCCChhHHHHHHHHHHHccC
Q 041863 66 SRHAF---KRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 66 ~~~a~---~~~~~~~~~~~~~~~i~~~c~g 92 (197)
..++. ......++..+....++...+|
T Consensus 209 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 209 ENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 87652 2111222333344445555556
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.94 E-value=0.74 Score=42.37 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=59.6
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChHHHH-hc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQVLR-NW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~v~~-~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|||++.... .++.|+..+....++.++|+||.+..-.. .+ +....+.+.+++.++..+.|.+.........
T Consensus 121 KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-- 198 (830)
T PRK07003 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-- 198 (830)
T ss_pred eEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--
Confidence 368899998664 46777665544445778888887764332 21 2346899999999999998887654332111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+..+.|++.++|
T Consensus 199 d~eAL~lIA~~A~G 212 (830)
T PRK07003 199 EPQALRLLARAAQG 212 (830)
T ss_pred CHHHHHHHHHHcCC
Confidence 23566788899998
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.84 E-value=2 Score=38.95 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=56.1
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+++.. ...+.|+..+..-.+++++|++|.+. .+...+ +....+.+..++.++..+.+.+.........
T Consensus 126 KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-- 203 (700)
T PRK12323 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-- 203 (700)
T ss_pred eEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--
Confidence 47899999865 45777777665444566655555443 343332 2346789999999999888876543222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+..+.|++.++|
T Consensus 204 d~eAL~~IA~~A~G 217 (700)
T PRK12323 204 EVNALRLLAQAAQG 217 (700)
T ss_pred CHHHHHHHHHHcCC
Confidence 13455778899999
No 28
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.69 E-value=1.6 Score=36.70 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=55.0
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++.. .....|+..+....+++.+|++|.+... ...+ .....+.+.+++.++..+++...... ..
T Consensus 142 ~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~- 217 (365)
T PRK07471 142 WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP- 217 (365)
T ss_pred CEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC-
Confidence 347899999755 3455565554433356677777776643 2222 33568899999999999999875311 11
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
......++..++|
T Consensus 218 --~~~~~~l~~~s~G 230 (365)
T PRK07471 218 --DDPRAALAALAEG 230 (365)
T ss_pred --HHHHHHHHHHcCC
Confidence 1122677889999
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.02 E-value=1.1 Score=38.02 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=57.5
Q ss_pred CEEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEE--EeCChHHH---HhcCCceeEecCCCChHHHHHHHHhhcC-CC
Q 041863 1 MKVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIII--TTRNKQVL---RNWEVRKIYEIEALEYHHALDLFSRHAF-KR 72 (197)
Q Consensus 1 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~a~~L~~~~a~-~~ 72 (197)
|+.+|++|.|... .|=+.|+|..- +|.-|+| ||.|+.-. ...+...++.+.+|+.++-.+++.+-.. ..
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 5789999999754 45566777544 5776666 66666431 1113457999999999999999987221 11
Q ss_pred CCCC---h-hHHHHHHHHHHHccC
Q 041863 73 NHLD---V-GYEKLSSNVMKCAQG 92 (197)
Q Consensus 73 ~~~~---~-~~~~~~~~i~~~c~g 92 (197)
.... . -..++...++..++|
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCc
Confidence 1111 1 123456778888888
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.95 E-value=1.7 Score=36.44 Aligned_cols=91 Identities=11% Similarity=0.190 Sum_probs=57.5
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++.... .++.++..+....+..++|++|.+.. +...+ +....+++.+++.++..+.+...+.......
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-- 198 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-- 198 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 479999998664 46667665554445667777765543 32222 2346889999999999888876543222111
Q ss_pred HHHHHHHHHHHccCccc
Q 041863 79 YEKLSSNVMKCAQGVLK 95 (197)
Q Consensus 79 ~~~~~~~i~~~c~g~l~ 95 (197)
..+....|+..++|.+.
T Consensus 199 ~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 199 DEYALKLIAYHAHGSMR 215 (363)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 13456778888888333
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.88 E-value=1.7 Score=38.18 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++.. ..++.|+..+....+.+.+|++|.. ..+...+ .....+.+.+++.++..+.+.+.+-......
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i- 195 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA- 195 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 348899999855 3567777665544445555555543 3332222 2346899999999999999987653322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....|+..++|
T Consensus 196 -~~~Al~~ia~~s~G 209 (504)
T PRK14963 196 -EPEALQLVARLADG 209 (504)
T ss_pred -CHHHHHHHHHHcCC
Confidence 23567788889998
No 32
>PRK06620 hypothetical protein; Validated
Probab=89.65 E-value=1.7 Score=33.63 Aligned_cols=84 Identities=7% Similarity=0.104 Sum_probs=49.9
Q ss_pred EEEEeCCCChHH--HHHhhccCCCCCCCcEEEEEeCChHH-------HHhcCCceeEecCCCChHHHHHHHHhhcCCCC-
Q 041863 4 LIVFDDVTCFTQ--LESLIGSLDWLTPVSRIIITTRNKQV-------LRNWEVRKIYEIEALEYHHALDLFSRHAFKRN- 73 (197)
Q Consensus 4 LlVLDdv~~~~~--~~~l~~~~~~~~~gs~iivTTR~~~v-------~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~- 73 (197)
+|++||+....+ +-.+...+. ..|..||+|++.... ...+...-++.+++++.++-..++.+.+....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 688999974432 222222111 246789999974432 22223345789999999988888877653221
Q ss_pred CCChhHHHHHHHHHHHccC
Q 041863 74 HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 74 ~~~~~~~~~~~~i~~~c~g 92 (197)
..+ .++..-|++.+.|
T Consensus 166 ~l~---~ev~~~L~~~~~~ 181 (214)
T PRK06620 166 TIS---RQIIDFLLVNLPR 181 (214)
T ss_pred CCC---HHHHHHHHHHccC
Confidence 122 3556677777766
No 33
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.26 E-value=2.6 Score=34.82 Aligned_cols=88 Identities=10% Similarity=0.176 Sum_probs=54.7
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++... .....++..+....+.+.+|++|.+.. +...+ .....+...+++.++..+.+...+-......
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-- 196 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-- 196 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 47889999754 446666655543345666677775554 22222 2235788899999998888877553222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+.+..++..++|
T Consensus 197 ~~~a~~~l~~~~~g 210 (355)
T TIGR02397 197 EDEALELIARAADG 210 (355)
T ss_pred CHHHHHHHHHHcCC
Confidence 13566778888888
No 34
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.66 E-value=1.9 Score=35.33 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=51.3
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
+||+||+.... ..+.|...+....+.+++|+||.+.. +.... .....+.+.+++.++..+.+...+...... --
T Consensus 128 vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~ 205 (337)
T PRK12402 128 TILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YD 205 (337)
T ss_pred EEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 79999997552 23333333222234567887775432 22222 223577889999999888888754322211 11
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
.+....+++.++|
T Consensus 206 ~~al~~l~~~~~g 218 (337)
T PRK12402 206 DDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHHHHcCC
Confidence 3566778888877
No 35
>PRK05642 DNA replication initiation factor; Validated
Probab=87.01 E-value=1.6 Score=34.17 Aligned_cols=86 Identities=14% Similarity=0.279 Sum_probs=50.6
Q ss_pred EEEEeCCCCh---HHHHH-hhccCCC-CCCCcEEEEEeCChHHHHh---------cCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQLES-LIGSLDW-LTPVSRIIITTRNKQVLRN---------WEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTTR~~~v~~~---------~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+||+||+... ..|+. |...++. ..+|..+|+||+...-... +....++++.+++.++-.+++..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999632 24432 3322221 1246778998875432111 1223678899999999999988655
Q ss_pred CCCC-CCChhHHHHHHHHHHHccC
Q 041863 70 FKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
.... ..+ .++..-|++.+.|
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~ 200 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTR 200 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCC
Confidence 3322 122 3556667776666
No 36
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=85.96 E-value=11 Score=31.33 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=53.1
Q ss_pred EEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
.+|+|+++.. .....|+..+-.-.+++.+|+||.+... ...+ +....+.+.+++.+++.+.+...... ..
T Consensus 109 v~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---~~--- 182 (328)
T PRK05707 109 VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---SD--- 182 (328)
T ss_pred EEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---CC---
Confidence 3467999865 3466666555443457778888877643 3232 23467899999999999988765311 11
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
...+..++..++|
T Consensus 183 ~~~~~~~l~la~G 195 (328)
T PRK05707 183 ERERIELLTLAGG 195 (328)
T ss_pred hHHHHHHHHHcCC
Confidence 2334566778888
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=85.52 E-value=2.9 Score=34.31 Aligned_cols=88 Identities=10% Similarity=0.166 Sum_probs=52.9
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|||+++... .-+.|...+....+.+++|+++... .+.... .....+++.+++.++..+.+...+-.....-
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-- 178 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-- 178 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 479999998653 2333333332223466777766443 221111 1235789999999999988887654322111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+....|+..++|
T Consensus 179 ~~~~l~~i~~~~~g 192 (319)
T PLN03025 179 VPEGLEAIIFTADG 192 (319)
T ss_pred CHHHHHHHHHHcCC
Confidence 13567889999999
No 38
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.92 E-value=8.2 Score=32.90 Aligned_cols=83 Identities=13% Similarity=0.238 Sum_probs=53.4
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+++... ....|+..+....++..+|++|.+.. +...+ +....+.+.+++.++..+.+....+ .+
T Consensus 119 kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~-- 192 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD-- 192 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC--
Confidence 367889998653 34555555543445666777666643 33332 2346889999999999988875321 11
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.+.+..++..++|
T Consensus 193 -~~~a~~la~~s~G 205 (394)
T PRK07940 193 -PETARRAARASQG 205 (394)
T ss_pred -HHHHHHHHHHcCC
Confidence 2446778889998
No 39
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.68 E-value=4.7 Score=32.66 Aligned_cols=92 Identities=9% Similarity=0.162 Sum_probs=53.8
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-+|++|+++.. +..+.|...+....+.+.+|+++.... +.... .....+.+.+++.++....+...+......-
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i-- 181 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI-- 181 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 47899999754 233444443333334567777764321 11111 1234688999999998888877654322111
Q ss_pred HHHHHHHHHHHccCcccc
Q 041863 79 YEKLSSNVMKCAQGVLKI 96 (197)
Q Consensus 79 ~~~~~~~i~~~c~g~l~~ 96 (197)
..+....++..++|.+..
T Consensus 182 ~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 135677888889884443
No 40
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.64 E-value=2.2 Score=36.39 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=86.1
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhc------CCceeEecCCCChHHHHH-----------
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNW------EVRKIYEIEALEYHHALD----------- 63 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~a~~----------- 63 (197)
++.+|+||.|.....|+..+..+.+.++. +|++|+-+......- |....+.+-||+..|-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~~~ 172 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPSKL 172 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchhHH
Confidence 45789999999999999888887766666 888888776654321 345688999999988865
Q ss_pred --HHHhhcCCCCCCC------hhH------HH-HHHHHHHHccCcccccccCCCHHhHHHHHHhhcCCCC-CCHHHHHHH
Q 041863 64 --LFSRHAFKRNHLD------VGY------EK-LSSNVMKCAQGVLKISYDGLDDKEKNIFLDVACFFQG-QDVNLVMNF 127 (197)
Q Consensus 64 --L~~~~a~~~~~~~------~~~------~~-~~~~i~~~c~g~l~~s~~~L~~~~k~~fl~la~fp~~-~~~~~l~~~ 127 (197)
+|.++...+.-|. ... .. +-++|++.++ . ... ...++.+.+++..... +....+.+.
T Consensus 173 ~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~-~-----~~~-~~~k~i~~~l~~~~g~~~s~~~la~~ 245 (398)
T COG1373 173 ELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGK-I-----ENA-DLMKRILRFLASNIGSPISYSSLARE 245 (398)
T ss_pred HHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcC-c-----ccH-HHHHHHHHHHHhhcCCccCHHHHHHH
Confidence 4555442222111 000 11 1123333222 0 111 4556666666655544 788888888
Q ss_pred HH-HcCCCcccchHHHhhCcCceee
Q 041863 128 LN-ASGFYPEIGISFLVDKSLIVIS 151 (197)
Q Consensus 128 w~-~~g~~~~~~l~~L~~~sll~~~ 151 (197)
+. -+......+++.|.+.-++...
T Consensus 246 l~~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 246 LKGISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HhccchHHHHHHHHHHHHhhheEEe
Confidence 74 3323345567777777666633
No 41
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.23 E-value=4.6 Score=33.78 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=43.1
Q ss_pred EEEEEeCCCCh----------------HHHHHhhccCCC--CCCCcEEEEEeCChHHHHh-----cCCceeEecCCCChH
Q 041863 3 VLIVFDDVTCF----------------TQLESLIGSLDW--LTPVSRIIITTRNKQVLRN-----WEVRKIYEIEALEYH 59 (197)
Q Consensus 3 ~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~ 59 (197)
.+|+||+++.. ..+..++..+.. ..++..||.||........ ......+.++..+.+
T Consensus 217 ~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 58999998743 113333322221 1246678888875433211 122457889999999
Q ss_pred HHHHHHHhhcCCC
Q 041863 60 HALDLFSRHAFKR 72 (197)
Q Consensus 60 ~a~~L~~~~a~~~ 72 (197)
+..++|..+....
T Consensus 297 ~r~~Il~~~~~~~ 309 (364)
T TIGR01242 297 GRLEILKIHTRKM 309 (364)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998876443
No 42
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=83.71 E-value=1.1 Score=34.38 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=26.4
Q ss_pred EEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHhc
Q 041863 4 LIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRNW 45 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~ 45 (197)
++|||||+.. .....+...+....+++.+||||.++.+...+
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999754 23444443333344578999999998887764
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=83.04 E-value=3.6 Score=35.91 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=51.3
Q ss_pred EEEEEEeCCCChH------HHHHhhccCCCCCCCcEEEEEeCChH-HHH-hc-CCceeEecCCCChHHHHHHHHhhcCCC
Q 041863 2 KVLIVFDDVTCFT------QLESLIGSLDWLTPVSRIIITTRNKQ-VLR-NW-EVRKIYEIEALEYHHALDLFSRHAFKR 72 (197)
Q Consensus 2 r~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~iivTTR~~~-v~~-~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~ 72 (197)
+-+||+|+++... .++.+...+. . .+..||+|+.+.. ... .. .....+.+.+++.++....+...+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~-~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIK-K-AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHH-c-CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4589999997642 2444544333 1 2344666664332 111 11 234678899999999888887755332
Q ss_pred CCCChhHHHHHHHHHHHccC
Q 041863 73 NHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 73 ~~~~~~~~~~~~~i~~~c~g 92 (197)
.... ..++...|++.++|
T Consensus 177 gi~i--~~eaL~~Ia~~s~G 194 (482)
T PRK04195 177 GIEC--DDEALKEIAERSGG 194 (482)
T ss_pred CCCC--CHHHHHHHHHHcCC
Confidence 2111 13567788888888
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.67 E-value=6 Score=36.12 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=56.3
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHHH-Hh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+|... ...+.|+..+....++.++|++|.+..-. .. ......+.+.+++.++..+.+.+.+...... -
T Consensus 120 KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--i 197 (702)
T PRK14960 120 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--A 197 (702)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47899999865 34566665554333566777777654322 11 1334688999999999988887655332211 1
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......|++.++|
T Consensus 198 d~eAL~~IA~~S~G 211 (702)
T PRK14960 198 DQDAIWQIAESAQG 211 (702)
T ss_pred CHHHHHHHHHHcCC
Confidence 23456778888888
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=82.32 E-value=6 Score=36.49 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEE--eCChH--HHHh-cCCceeEecCCCChHHHHHHHHhhcCC---
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIIT--TRNKQ--VLRN-WEVRKIYEIEALEYHHALDLFSRHAFK--- 71 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivT--TR~~~--v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~--- 71 (197)
+.+|||||++.. .+.+.|++.+. .|+.++++ |.+.. +... ......+.+++++.++...++.+....
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 458999999754 45667776543 35555553 44432 1111 122457899999999999998875421
Q ss_pred --CCCCChhHHHHHHHHHHHccC
Q 041863 72 --RNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 72 --~~~~~~~~~~~~~~i~~~c~g 92 (197)
+.....-..+....|+..++|
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCC
Confidence 011111123456778888888
No 46
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.89 E-value=8.3 Score=33.72 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=53.7
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....+...+|++|.+ ..+...+ .....+.+.+++.++....+.+.+......-
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i- 196 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI- 196 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-
Confidence 458999999765 3455666555433334444445444 2332222 2346889999999998888887653222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-.+....|+..++|
T Consensus 197 -~~eal~~Ia~~s~G 210 (472)
T PRK14962 197 -DREALSFIAKRASG 210 (472)
T ss_pred -CHHHHHHHHHHhCC
Confidence 13456778888888
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.15 E-value=11 Score=34.22 Aligned_cols=91 Identities=11% Similarity=0.203 Sum_probs=57.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|||+|+.. ...+.|+..+....+..++|++|.+ ..+...+ .....+.+.+++.++..+.+.+.+.......
T Consensus 126 KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-- 203 (618)
T PRK14951 126 KVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-- 203 (618)
T ss_pred eEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 37899999855 4566777655543345666666544 3333222 2346899999999999888876553322111
Q ss_pred HHHHHHHHHHHccCccc
Q 041863 79 YEKLSSNVMKCAQGVLK 95 (197)
Q Consensus 79 ~~~~~~~i~~~c~g~l~ 95 (197)
.......|++.++|.+.
T Consensus 204 e~~AL~~La~~s~GslR 220 (618)
T PRK14951 204 EPQALRLLARAARGSMR 220 (618)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 13556788888998333
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.79 E-value=10 Score=33.82 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....+.+.+|++|.+. .+... ......+++.+++.++..+.+...+......
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-- 197 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-- 197 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--
Confidence 448999999755 34666666555433456566555443 33322 2234689999999999887777643221111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-.......|+..++|
T Consensus 198 ~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 198 SDEQSLEYIAYHAKG 212 (546)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123456778888888
No 49
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.73 E-value=6.9 Score=30.35 Aligned_cols=86 Identities=12% Similarity=0.196 Sum_probs=43.8
Q ss_pred EEEEeCCCCh---HHHHH-hhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQLES-LIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|++||+... ..|+. +...++. ...|.+||+|+...- +...+...-++++.+++.++-.+++.+.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 6899999753 22322 2111110 124778999995432 12222345688999999999999998877
Q ss_pred CCCCCCChhHHHHHHHHHHHcc
Q 041863 70 FKRNHLDVGYEKLSSNVMKCAQ 91 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~ 91 (197)
....-.- -.++..-|+..+.
T Consensus 180 ~~~~~~l--~~~v~~~l~~~~~ 199 (219)
T PF00308_consen 180 KERGIEL--PEEVIEYLARRFR 199 (219)
T ss_dssp HHTT--S---HHHHHHHHHHTT
T ss_pred HHhCCCC--cHHHHHHHHHhhc
Confidence 4332111 1244445555443
No 50
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.35 E-value=6.7 Score=35.50 Aligned_cols=92 Identities=8% Similarity=0.072 Sum_probs=56.1
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....+...+|++|.+ ..+...+ .....+++.+++.++..+.+...+.......
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i- 198 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY- 198 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 458899999765 3456666655433345556665554 3333222 2235788999999999888877553322111
Q ss_pred hHHHHHHHHHHHccCccc
Q 041863 78 GYEKLSSNVMKCAQGVLK 95 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g~l~ 95 (197)
..+.+..|++.++|.+.
T Consensus 199 -d~eal~lIA~~s~GdlR 215 (624)
T PRK14959 199 -DPAAVRLIARRAAGSVR 215 (624)
T ss_pred -CHHHHHHHHHHcCCCHH
Confidence 13556778888888443
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=79.93 E-value=3.3 Score=37.85 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=53.4
Q ss_pred EEEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++.... ..+.|+..+......+++|++|.+.. +... .+....+.+.+++.++..+.+.+..-......
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i- 198 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY- 198 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-
Confidence 3478999998653 34445544432234566777765442 2211 12234678889999998888876553322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
.......|++.++|
T Consensus 199 -d~eAL~~Ia~~A~G 212 (709)
T PRK08691 199 -EPPALQLLGRAAAG 212 (709)
T ss_pred -CHHHHHHHHHHhCC
Confidence 23566788899988
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.86 E-value=9.3 Score=33.59 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++... ...+.|+..+....+.+++|++|.+ ..+...+ .....+.+.+++.++..+.+.+.+......-
T Consensus 118 KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-- 195 (491)
T PRK14964 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-- 195 (491)
T ss_pred eEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--
Confidence 37899999754 3466666555444456666666543 3443332 2346789999999999888887664332211
Q ss_pred HHHHHHHHHHHccCcc
Q 041863 79 YEKLSSNVMKCAQGVL 94 (197)
Q Consensus 79 ~~~~~~~i~~~c~g~l 94 (197)
..+....|++.++|.+
T Consensus 196 ~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 196 DEESLKLIAENSSGSM 211 (491)
T ss_pred CHHHHHHHHHHcCCCH
Confidence 2355678889998833
No 53
>PRK04132 replication factor C small subunit; Provisional
Probab=79.76 E-value=28 Score=32.87 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=56.2
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+++... ....|+..+-.....+++|+++.+..- ...+ +....+++.+++.++-.+.+.+.+-.....-
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 589999998764 455555554433356677776655432 2222 2356899999999998888876543221111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+....|+..|+|
T Consensus 710 ~~e~L~~Ia~~s~G 723 (846)
T PRK04132 710 TEEGLQAILYIAEG 723 (846)
T ss_pred CHHHHHHHHHHcCC
Confidence 13467889999999
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=79.72 E-value=4.9 Score=34.86 Aligned_cols=89 Identities=10% Similarity=0.186 Sum_probs=51.4
Q ss_pred EEEEeCCCCh---HHH-HHhhccCCC-CCCCcEEEEEeCChH-H--------HHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQL-ESLIGSLDW-LTPVSRIIITTRNKQ-V--------LRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTTR~~~-v--------~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+||+||+... ..+ +.|...++. ...|..||+||.... . ...+...-++.+.+++.++-.+++.+.+
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 7899999533 122 223222211 124557888875432 1 1222334577899999999999998876
Q ss_pred CCCCCCChhHHHHHHHHHHHccC
Q 041863 70 FKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
-.......--.++..-|+..++|
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC
Confidence 43211001124566778888887
No 55
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.64 E-value=7.2 Score=32.60 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=52.2
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeC-ChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTR-NKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR-~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ..++.++..+....+.+.+|++|. ...+.... .....++..+++.++....+...+......-
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i- 187 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF- 187 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC-
Confidence 347999999754 346666544432233455555553 32222221 2345788999999998888877553322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....++..++|
T Consensus 188 -~~~al~~l~~~~~g 201 (367)
T PRK14970 188 -EDDALHIIAQKADG 201 (367)
T ss_pred -CHHHHHHHHHhCCC
Confidence 13567778888888
No 56
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.94 E-value=18 Score=32.70 Aligned_cols=117 Identities=9% Similarity=0.141 Sum_probs=62.9
Q ss_pred EEEEeCCCCh---HHHH-HhhccCCC-CCCCcEEEEEeCCh---------HHHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQLE-SLIGSLDW-LTPVSRIIITTRNK---------QVLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|||||+... +.|+ .|...++. ...|..||+||... .+...+...-++.+.+.+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7999999643 2222 22221111 12356688888753 122223345688999999999999999877
Q ss_pred CCCCCCChhHHHHHHHHHHHccCcccccccCCCHHhHHHHHHhhcCCCCCCHHHHHH
Q 041863 70 FKRNHLDVGYEKLSSNVMKCAQGVLKISYDGLDDKEKNIFLDVACFFQGQDVNLVMN 126 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g~l~~s~~~L~~~~k~~fl~la~fp~~~~~~~l~~ 126 (197)
-...-.. -.++..-|+..+.+ ++..|-....++..+..+..+.++.+.+..
T Consensus 460 ~~r~l~l--~~eVi~yLa~r~~r----nvR~LegaL~rL~a~a~~~~~~itl~la~~ 510 (617)
T PRK14086 460 VQEQLNA--PPEVLEFIASRISR----NIRELEGALIRVTAFASLNRQPVDLGLTEI 510 (617)
T ss_pred HhcCCCC--CHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 4332211 13455556554443 444444444444444444444455444433
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.20 E-value=11 Score=33.14 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=55.1
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++... ..++.|+..+........+|++|.. ..+...+ .....|.+.+++.++..+.+.+.+...... -
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~ 200 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--Y 200 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47899999855 4577777666433344554544443 3333222 234578999999998888887654322211 1
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+....|++.++|
T Consensus 201 e~eAL~~Ia~~S~G 214 (484)
T PRK14956 201 DQEGLFWIAKKGDG 214 (484)
T ss_pred CHHHHHHHHHHcCC
Confidence 23567788999999
No 58
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=78.11 E-value=12 Score=33.24 Aligned_cols=89 Identities=9% Similarity=0.129 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... +..+.|+..+-...+.+++|++|.+..- ...+ .....+++.+++.++....+...+.......
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i- 196 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY- 196 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999765 3455565554433456777777766421 1111 2346889999999998888776543222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+.+..|+..++|
T Consensus 197 -~~~Al~~Ia~~s~G 210 (535)
T PRK08451 197 -EPEALEILARSGNG 210 (535)
T ss_pred -CHHHHHHHHHHcCC
Confidence 23567788888888
No 59
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=78.10 E-value=30 Score=28.65 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=67.7
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|+++... .-..|+..+-.-.+++.+|++|.+.. +...+ +....+.+.+++.+++.+.+.... . +
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~-- 187 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S-- 187 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C--
Confidence 368899998653 34555544443345777777776543 33332 334678899999999998887531 1 1
Q ss_pred HHHHHHHHHHHccCc----ccccccCCCHHhHHHHHHhhc-CCCCCCHHHHHHHHHHcC
Q 041863 79 YEKLSSNVMKCAQGV----LKISYDGLDDKEKNIFLDVAC-FFQGQDVNLVMNFLNASG 132 (197)
Q Consensus 79 ~~~~~~~i~~~c~g~----l~~s~~~L~~~~k~~fl~la~-fp~~~~~~~l~~~w~~~g 132 (197)
...+..++..++|. +.+.-+.--...+..+..+.. .+...+.-.+...|...+
T Consensus 188 -~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 245 (319)
T PRK08769 188 -ERAAQEALDAARGHPGLAAQWLREDGLALRRAVAQDLEQIASGRAGAVDVAQRWTNDG 245 (319)
T ss_pred -hHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHhccCcccHHHHHHHHccCC
Confidence 12255678889992 332212221222333333333 333345556666665533
No 60
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.64 E-value=5.4 Score=33.92 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEe-CChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-RNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ..++.|+..+....+.+.+|++| +...+.+.+ .....+++.+++.++..+.+...+-.....
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-- 205 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-- 205 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899999755 35667766655444566666555 434443332 123578899999998887777654221111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-..+.+..|+..++|
T Consensus 206 i~~~al~~l~~~s~g 220 (397)
T PRK14955 206 VDADALQLIGRKAQG 220 (397)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123567788888988
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.51 E-value=10 Score=35.84 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=56.9
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|||++... ...+.|+..+-...+..++|++|.+. .+...+ .....|++.+++.++..+.+.+.+......
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-- 197 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-- 197 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 458999999755 45677766554333456666655443 333222 234689999999999998887754322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-..+....|++.++|
T Consensus 198 ~edeAL~lIA~~S~G 212 (944)
T PRK14949 198 FEAEALTLLAKAANG 212 (944)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123566778888998
No 62
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.34 E-value=12 Score=33.82 Aligned_cols=88 Identities=13% Similarity=0.231 Sum_probs=55.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEe-CChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-RNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++... ...+.|+..+..-..++.+|++| ....+.+.+ ....+++..+++.++....+.+.+.......
T Consensus 123 KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-- 200 (614)
T PRK14971 123 KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-- 200 (614)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 37899999765 34666665554333456655544 444444432 3346889999999999888876543222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+.+..|+..+||
T Consensus 201 ~~~al~~La~~s~g 214 (614)
T PRK14971 201 EPEALNVIAQKADG 214 (614)
T ss_pred CHHHHHHHHHHcCC
Confidence 13456788889998
No 63
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.48 E-value=2.4 Score=31.31 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=22.4
Q ss_pred EEEEeCCCCh-----HHHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTCF-----TQLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||++-.. -..+.+...+....++.-||+|.|+..
T Consensus 98 LlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 98 LVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred EEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 7999999533 122333333322335678999999864
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=76.40 E-value=8.9 Score=34.91 Aligned_cols=89 Identities=10% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+-.-.+..++|++|.+. .+...+ .....+.+.+++.++..+.+.+........
T Consensus 120 ~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-- 197 (647)
T PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-- 197 (647)
T ss_pred CEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899999755 35666665554333455555555544 333222 235789999999999998887654221111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
........|+..++|
T Consensus 198 ~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 198 FEPRALQLLARAADG 212 (647)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123456778888998
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=76.16 E-value=6.3 Score=32.50 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred EEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
.+|||+++.. +.|..|..........++.|+.+-.... ...+ .....+.-.+|..++..+-|...+-.....- .
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--D 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--C
Confidence 5789999876 4588887666544555655544433222 1111 2234678889999999888888775443222 2
Q ss_pred HHHHHHHHHHccCcc
Q 041863 80 EKLSSNVMKCAQGVL 94 (197)
Q Consensus 80 ~~~~~~i~~~c~g~l 94 (197)
....+.|++.++|.|
T Consensus 210 ~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 210 DDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHHHcCCcH
Confidence 356788999999933
No 66
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.30 E-value=22 Score=30.92 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=53.3
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....++..+|++|.+ ..+.+.+ .....+.+.+++.++..+.+...+-.....
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-- 199 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-- 199 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899999754 3345555544433345666666643 2232221 234678999999999888887654322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-..+.+..|+..++|
T Consensus 200 i~~~al~~L~~~s~g 214 (451)
T PRK06305 200 TSREALLPIARAAQG 214 (451)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123567788888888
No 67
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.79 E-value=42 Score=27.84 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=53.2
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
.+|+|+++... ....|+..+-.-.+++.+|++|.+.. +...+ +....+.+.+++.++..+.+...... .
T Consensus 110 V~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~----~--- 182 (325)
T PRK06871 110 VVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA----E--- 182 (325)
T ss_pred EEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----C---
Confidence 57799998653 45666665554446777777777653 33332 33568899999999999888865311 1
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
...+...+..++|
T Consensus 183 ~~~~~~~~~l~~g 195 (325)
T PRK06871 183 ISEILTALRINYG 195 (325)
T ss_pred hHHHHHHHHHcCC
Confidence 1124455677888
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.36 E-value=18 Score=32.52 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=54.9
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... +..+.|+..+....+.+.+|++|.+. .+...+ .....+.+.+++..+....+.+.+.......
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i- 199 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL- 199 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 457999999754 44666665554334566666666443 333222 2235778888999988888877654322111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+.+..|+..++|
T Consensus 200 -~~eal~~La~~s~G 213 (585)
T PRK14950 200 -EPGALEAIARAATG 213 (585)
T ss_pred -CHHHHHHHHHHcCC
Confidence 13557788888988
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.65 E-value=19 Score=32.73 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=53.8
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEe-CChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITT-RNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+++... ..+.|+..+..-.+.+.+|++| +...+.+.+ .....+++.+++.++....+.+.+...... -
T Consensus 129 KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I 206 (620)
T PRK14954 129 RVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--I 206 (620)
T ss_pred EEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 378999997653 4666666554333455555544 434443332 345689999999999887777644221111 1
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+.+..|+..++|
T Consensus 207 ~~eal~~La~~s~G 220 (620)
T PRK14954 207 DADALQLIARKAQG 220 (620)
T ss_pred CHHHHHHHHHHhCC
Confidence 13567788899998
No 70
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=72.61 E-value=17 Score=32.78 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=54.2
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEe-CChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-RNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++... ...+.|+..+..-.+++++|++| ....+...+ .....+.+.+++.++....+.+.+-......
T Consensus 134 KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-- 211 (598)
T PRK09111 134 KVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-- 211 (598)
T ss_pred EEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--
Confidence 36899999755 34566665544333566666555 333333332 2346889999999999888877553222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
-.+....|+..++|
T Consensus 212 ~~eAl~lIa~~a~G 225 (598)
T PRK09111 212 EDEALALIARAAEG 225 (598)
T ss_pred CHHHHHHHHHHcCC
Confidence 13556778888888
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.04 E-value=14 Score=32.74 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=53.0
Q ss_pred EEEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++... ..+.|+..+....+.+.+|++|.+.. +...+ .....+++.+++.++..+.+.+........
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-- 197 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-- 197 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 3479999998653 35666655544334666666665432 22111 123578899999998887776644222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-.......|++.++|
T Consensus 198 ~~~~al~~la~~s~G 212 (527)
T PRK14969 198 FDATALQLLARAAAG 212 (527)
T ss_pred CCHHHHHHHHHHcCC
Confidence 123455778888888
No 72
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=71.71 E-value=12 Score=30.36 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=40.0
Q ss_pred EEEEEeCCCCh-----------HHHHHhhccCCCCCCCcEEEEEeCChHHHHhc--------CCceeEecCCCChHHHHH
Q 041863 3 VLIVFDDVTCF-----------TQLESLIGSLDWLTPVSRIIITTRNKQVLRNW--------EVRKIYEIEALEYHHALD 63 (197)
Q Consensus 3 ~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~ 63 (197)
-+|+||++... +.++.|...+.....+.+||+++.....-... .....+.+++++.++-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 36889999632 23455555544344556677766533221111 113568899999999888
Q ss_pred HHHhhc
Q 041863 64 LFSRHA 69 (197)
Q Consensus 64 L~~~~a 69 (197)
++....
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 887654
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=71.16 E-value=18 Score=33.98 Aligned_cols=89 Identities=10% Similarity=0.137 Sum_probs=54.5
Q ss_pred EEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
++|||+++.. ...+.|+..+..-...+.+|++|.+. .+...+ .....|.+..++.++..+.+.+..-..... -.
T Consensus 123 V~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id 200 (824)
T PRK07764 123 IFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VE 200 (824)
T ss_pred EEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 6889999865 34566665555444566666555433 344433 235688999999998888777643221111 11
Q ss_pred HHHHHHHHHHccCcc
Q 041863 80 EKLSSNVMKCAQGVL 94 (197)
Q Consensus 80 ~~~~~~i~~~c~g~l 94 (197)
......|+..++|.+
T Consensus 201 ~eal~lLa~~sgGdl 215 (824)
T PRK07764 201 PGVLPLVIRAGGGSV 215 (824)
T ss_pred HHHHHHHHHHcCCCH
Confidence 344567888888844
No 74
>PF13730 HTH_36: Helix-turn-helix domain
Probab=70.97 E-value=4.5 Score=23.66 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCHHhHHHHHHhhcCCCC----C-CHHHHHHHHHHcCCCcccchHHHhhCcCc
Q 041863 100 GLDDKEKNIFLDVACFFQG----Q-DVNLVMNFLNASGFYPEIGISFLVDKSLI 148 (197)
Q Consensus 100 ~L~~~~k~~fl~la~fp~~----~-~~~~l~~~w~~~g~~~~~~l~~L~~~sll 148 (197)
+|++.++..+.++.-+..+ + +.+.+........-.....+++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 6889999999999888633 3 34555544433222235678999998875
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=70.89 E-value=16 Score=28.17 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=34.3
Q ss_pred EEEEeCCCChH--HHHHhhccCCC-CCCCc-EEEEEeCChHHHH--------hcCCceeEecCCCChHHHHHHHHhh
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDW-LTPVS-RIIITTRNKQVLR--------NWEVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~-~~~gs-~iivTTR~~~v~~--------~~~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
+||+||+.... .-+.+...+.. ...+. .+|+|++...... .+.....+.+++++.++-..++.+.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 68999996432 22223222211 11333 4666666433221 1122357889999988766666653
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=69.94 E-value=7.2 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=23.5
Q ss_pred EEEEEEeCCCCh-----HHHHHhhccCCCC---CCCcEEEEEeCChH
Q 041863 2 KVLIVFDDVTCF-----TQLESLIGSLDWL---TPVSRIIITTRNKQ 40 (197)
Q Consensus 2 r~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTTR~~~ 40 (197)
..+||+||++.. ..+..+....... ..+..||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 468999999853 2233333333221 35778888887643
No 77
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=68.88 E-value=8.7 Score=25.60 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=45.7
Q ss_pred cccccCCCHHhHHHHHHhhc--C-----CCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeec-CCcEEec
Q 041863 95 KISYDGLDDKEKNIFLDVAC--F-----FQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN-NNKITMH 159 (197)
Q Consensus 95 ~~s~~~L~~~~k~~fl~la~--f-----p~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~-~~~~~mH 159 (197)
.+.+..+++....+++.++- + ...++...+..+-....-.....++.|..+++|.... .|.+.|.
T Consensus 17 ~l~~~~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 17 ALPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 35577888888999988873 1 2235667777766554444566799999999998664 4667665
No 78
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=68.60 E-value=28 Score=32.25 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=53.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEE-EEeCChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRII-ITTRNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++... ..+..|+..+-...+.+.+| +||....+...+ .....+.+.+++.++..+.+...+-..... -
T Consensus 120 KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--i 197 (725)
T PRK07133 120 KIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS--Y 197 (725)
T ss_pred EEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47899999754 35666665544333445544 444444443332 234689999999999888887643221111 1
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
....+..|+..++|
T Consensus 198 d~eAl~~LA~lS~G 211 (725)
T PRK07133 198 EKNALKLIAKLSSG 211 (725)
T ss_pred CHHHHHHHHHHcCC
Confidence 13456778888888
No 79
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=66.07 E-value=20 Score=30.44 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=47.3
Q ss_pred EEEEeCCCChH---HH-HHhhccCCC-CCCCcEEEEEeCCh-HHHH--------hcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCFT---QL-ESLIGSLDW-LTPVSRIIITTRNK-QVLR--------NWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~-~v~~--------~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|+|||+.... .+ +.+...+.. ...|..+|+||... .... .+....++.+++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78999997431 11 222222210 11355688877642 2221 12223468899999999999998876
Q ss_pred CCCCCCChhHHHHHHHHHHHccC
Q 041863 70 FKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
......- -.++...|+..+.|
T Consensus 282 ~~~~~~l--~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 282 EEEGLEL--PDEVLEFIAKNIRS 302 (405)
T ss_pred HHcCCCC--CHHHHHHHHHhcCC
Confidence 4332111 13455566665554
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=65.30 E-value=16 Score=31.52 Aligned_cols=86 Identities=13% Similarity=0.262 Sum_probs=48.9
Q ss_pred EEEEeCCCCh---HH-HHHhhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQ-LESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~-~~~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|||||+... .. -+.+...+.. ...|..||+||.... +...+....++.+++++.++-.+++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 7999999642 11 1222221110 113456888876532 11222334578999999999999999877
Q ss_pred CCCC-CCChhHHHHHHHHHHHccC
Q 041863 70 FKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
-... ..+ .++...|+..++|
T Consensus 294 ~~~~~~l~---~e~l~~ia~~~~~ 314 (450)
T PRK00149 294 EEEGIDLP---DEVLEFIAKNITS 314 (450)
T ss_pred HHcCCCCC---HHHHHHHHcCcCC
Confidence 4322 122 3456667766665
No 81
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=65.12 E-value=62 Score=27.84 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=41.0
Q ss_pred EEEEeCCCCh---HHHH-HhhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQLE-SLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
++++||+.-. +.|+ .+...++. ...|..||+|++... +...+...-++.+.+++.+.-..++.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 7899999642 1222 12111111 113448999995432 22223345688999999999999998866
Q ss_pred CC
Q 041863 70 FK 71 (197)
Q Consensus 70 ~~ 71 (197)
-.
T Consensus 258 ~~ 259 (408)
T COG0593 258 ED 259 (408)
T ss_pred Hh
Confidence 43
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.62 E-value=54 Score=28.82 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=52.7
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ...+.|+..+....+...+|++|.+ ..+.... .....+.+.+++.++-...+...+-.....
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-- 197 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-- 197 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 348899999755 3455665554433345555555533 2332221 234578899999999888777654322211
Q ss_pred hHHHHHHHHHHHccCcc
Q 041863 78 GYEKLSSNVMKCAQGVL 94 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g~l 94 (197)
-.......|+..++|.+
T Consensus 198 id~~al~~La~~s~G~l 214 (486)
T PRK14953 198 YEEKALDLLAQASEGGM 214 (486)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 11345667778888833
No 83
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=64.54 E-value=24 Score=29.47 Aligned_cols=65 Identities=9% Similarity=0.175 Sum_probs=45.1
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhh
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
.+|+|+++... ....|+..+-.-.+++.+|++|.+.+ +...+ +....+.+.+++.++..+.+...
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 67889998653 46777766655556776776666643 33332 33468899999999999988764
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=64.19 E-value=24 Score=27.97 Aligned_cols=67 Identities=6% Similarity=0.098 Sum_probs=38.8
Q ss_pred EEEEeCCCC----------hHHHHHhhccCCCCCCCcEEEEEeCChHHHH------hc--CCceeEecCCCChHHHHHHH
Q 041863 4 LIVFDDVTC----------FTQLESLIGSLDWLTPVSRIIITTRNKQVLR------NW--EVRKIYEIEALEYHHALDLF 65 (197)
Q Consensus 4 LlVLDdv~~----------~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~------~~--~~~~~~~l~~L~~~~a~~L~ 65 (197)
+|++|++.. .+..+.++...........+|+++.....-. .. .....+.+++++.++-.+++
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il 187 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIA 187 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHH
Confidence 688999974 2345556655443333445556554322211 00 11346788889988888888
Q ss_pred HhhcC
Q 041863 66 SRHAF 70 (197)
Q Consensus 66 ~~~a~ 70 (197)
.+.+.
T Consensus 188 ~~~~~ 192 (261)
T TIGR02881 188 ERMVK 192 (261)
T ss_pred HHHHH
Confidence 76653
No 85
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=63.85 E-value=51 Score=29.58 Aligned_cols=88 Identities=9% Similarity=0.182 Sum_probs=54.3
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-hHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++... ..++.|+..+....+.+.+|++|.+ ..+...+ .....+...+++.++-.+.+...+...... -
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--i 198 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--Y 198 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 37889999755 3466777665543456666666544 3333222 234578899999999888887655322211 1
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......|+..++|
T Consensus 199 d~eAl~lLa~~s~G 212 (563)
T PRK06647 199 EDEALKWIAYKSTG 212 (563)
T ss_pred CHHHHHHHHHHcCC
Confidence 23556678888888
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.81 E-value=52 Score=29.72 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=53.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEe-CChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITT-RNKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++... ...+.|+..+....+...+|++| ....+...+ .....+...+++.++..+.+.+.+.......
T Consensus 120 KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-- 197 (584)
T PRK14952 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-- 197 (584)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--
Confidence 37899999754 34666665554434455555544 444444332 2346889999999998888776543222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......|+..++|
T Consensus 198 ~~~al~~Ia~~s~G 211 (584)
T PRK14952 198 DDAVYPLVIRAGGG 211 (584)
T ss_pred CHHHHHHHHHHcCC
Confidence 12445667778888
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=62.25 E-value=63 Score=26.18 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=40.1
Q ss_pred EEEEeCCCCh-----------HHHHHhhccCCCCCCCcEEEEEeCChHHHHhc--------CCceeEecCCCChHHHHHH
Q 041863 4 LIVFDDVTCF-----------TQLESLIGSLDWLTPVSRIIITTRNKQVLRNW--------EVRKIYEIEALEYHHALDL 64 (197)
Q Consensus 4 LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~L 64 (197)
+|+||++... +..+.|.........+.+||+++......... .....+..++++.++-.++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 6899999642 23445554444344556777777543322111 1245788889998888888
Q ss_pred HHhhc
Q 041863 65 FSRHA 69 (197)
Q Consensus 65 ~~~~a 69 (197)
+....
T Consensus 205 ~~~~l 209 (287)
T CHL00181 205 AKIML 209 (287)
T ss_pred HHHHH
Confidence 87665
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=62.15 E-value=26 Score=31.68 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=52.3
Q ss_pred EEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
++|+|+++.. ..+..|+..+....+.+.+|++|... .+... ......+++.+++.++....+...+......- .
T Consensus 122 VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s 199 (605)
T PRK05896 122 VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--E 199 (605)
T ss_pred EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 5899999764 34566655443333455555555333 33322 22346789999999999888877543222111 1
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
...+..++..++|
T Consensus 200 ~eal~~La~lS~G 212 (605)
T PRK05896 200 DNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHHHHcCC
Confidence 3456778888888
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.91 E-value=28 Score=30.77 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=51.3
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+|... ...+.|+..+....+.+++|++|.+. .+...+ .....+.+.+++.++-.+.+....-......
T Consensus 121 kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-- 198 (509)
T PRK14958 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-- 198 (509)
T ss_pred EEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 36889999864 34566665544333567777666543 222221 2235678999998887766554432222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......|+..++|
T Consensus 199 ~~~al~~ia~~s~G 212 (509)
T PRK14958 199 ENAALDLLARAANG 212 (509)
T ss_pred CHHHHHHHHHHcCC
Confidence 12445678888888
No 90
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=60.48 E-value=7 Score=23.26 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=40.5
Q ss_pred CCCHHhHHHHHHhhcCCCC-CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec
Q 041863 100 GLDDKEKNIFLDVACFFQG-QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN 152 (197)
Q Consensus 100 ~L~~~~k~~fl~la~fp~~-~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~ 152 (197)
+|++..-.++.++.-+|++ .+...+...+.-..-.....++.|..++||....
T Consensus 2 glt~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 4677788889999999887 6888888877554434456799999999998654
No 91
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=60.24 E-value=12 Score=27.40 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=30.0
Q ss_pred EEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCC
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALE 57 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~ 57 (197)
.+|+||++.. +....|+..+-....++.+|++|.+..- ...+ +....+.+.+++
T Consensus 105 viiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 105 VIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 5789999865 3455555544434468888888887653 2222 334566666553
No 92
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=59.62 E-value=49 Score=28.74 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=46.8
Q ss_pred EEEEeCCCChH---H-HHHhhccCCC-CCCCcEEEEEeCCh-HH--------HHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCFT---Q-LESLIGSLDW-LTPVSRIIITTRNK-QV--------LRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTTR~~-~v--------~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|++||+.... . -+.+...++. ...|..||+||... .- ...+.....+.+.+++.++-..++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 78999985431 1 1122221110 01355788888542 21 1222234688899999999999998876
Q ss_pred CCCC-CCChhHHHHHHHHHHHccC
Q 041863 70 FKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
-... ..+ .++..-|+..+.+
T Consensus 285 ~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHcCCCCC---HHHHHHHHHhcCC
Confidence 4322 112 2344445555554
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=59.56 E-value=59 Score=29.13 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|++... ..+..|+..+....+...+|++|... .+...+ .....+...+++.++..+.+...+.......
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i- 198 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY- 198 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999855 45667766554333444555444333 332222 2345788889999998888877553222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
.......|+..++|
T Consensus 199 -~~~al~~ia~~s~G 212 (559)
T PRK05563 199 -EDEALRLIARAAEG 212 (559)
T ss_pred -CHHHHHHHHHHcCC
Confidence 13456777888888
No 94
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=59.51 E-value=43 Score=27.54 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=50.9
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++.... ..+.|+..+-.-. .+.+|++|.+. .+...+ +....+++.+++.++..+.+........
T Consensus 126 kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----- 199 (314)
T PRK07399 126 KVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----- 199 (314)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----
Confidence 368899997653 4555655543333 34555555444 333332 3456899999999999999987542111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......++..++|
T Consensus 200 ~~~~~~~l~~~a~G 213 (314)
T PRK07399 200 LNINFPELLALAQG 213 (314)
T ss_pred chhHHHHHHHHcCC
Confidence 11113567888888
No 95
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=59.24 E-value=69 Score=26.51 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=52.5
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
.+|+|++.... ....|+..+-.-.+++.+|++|.+.. +..++ +....+.+.+++.++..+.+.... . .
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~--- 182 (319)
T PRK06090 111 LFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T--- 182 (319)
T ss_pred EEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c---
Confidence 57889998653 46666665554446777777776654 44433 345688999999999999887531 1 1
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
....++..++|
T Consensus 183 --~~~~~l~l~~G 193 (319)
T PRK06090 183 --VPAYALKLNMG 193 (319)
T ss_pred --hHHHHHHHcCC
Confidence 13456778888
No 96
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=59.16 E-value=35 Score=29.51 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=47.9
Q ss_pred EEEEeCCCCh---HHH-HHhhccCCC-CCCCcEEEEEeC-ChHHHHh--------cCCceeEecCCCChHHHHHHHHhhc
Q 041863 4 LIVFDDVTCF---TQL-ESLIGSLDW-LTPVSRIIITTR-NKQVLRN--------WEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 4 LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTTR-~~~v~~~--------~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+|++||+... ..+ +.+...+.. ...|..||+||. .+.-... +....++.+++.+.+.-.+++.+.+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 7999999743 111 122211110 113456888874 3332221 2234577899999999999998876
Q ss_pred CCCC-CCChhHHHHHHHHHHHccC
Q 041863 70 FKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
.... ..+ .++...|+..+.|
T Consensus 277 ~~~~~~l~---~ev~~~Ia~~~~~ 297 (440)
T PRK14088 277 EIEHGELP---EEVLNFVAENVDD 297 (440)
T ss_pred HhcCCCCC---HHHHHHHHhcccc
Confidence 4322 122 3456666666655
No 97
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.83 E-value=37 Score=30.50 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=51.4
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeC-ChHHHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTR-NKQVLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR-~~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
=++|+|++... ...+.|+..+....+.+.+|++|. ...+...+ .....+...+++.++....+..........-
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-- 198 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-- 198 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--
Confidence 36889999755 345556554433334566665554 34444332 2345778889999888877765442221111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......|+..++|
T Consensus 199 ~~~al~~la~~a~G 212 (576)
T PRK14965 199 SDAALALVARKGDG 212 (576)
T ss_pred CHHHHHHHHHHcCC
Confidence 13456778888888
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.47 E-value=33 Score=27.80 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=35.3
Q ss_pred EEEEEeCCCCh--HH-HHHhhccCCCCCCCcEEEEEeCChHHH-Hhc-CCceeEecCCCChHHHHHHHH
Q 041863 3 VLIVFDDVTCF--TQ-LESLIGSLDWLTPVSRIIITTRNKQVL-RNW-EVRKIYEIEALEYHHALDLFS 66 (197)
Q Consensus 3 ~LlVLDdv~~~--~~-~~~l~~~~~~~~~gs~iivTTR~~~v~-~~~-~~~~~~~l~~L~~~~a~~L~~ 66 (197)
-+||+|++... .. .+.+...+....+++++|+||...... ..+ +....+.++..+.++..+++.
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 36899999755 22 222222222233577888888654321 111 122466777777777766554
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.54 E-value=76 Score=28.90 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=52.6
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|++... ...+.|+..+......+.+|++|.+.. +...+ .....+.+..++.++....+.+.+.......
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-- 200 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-- 200 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--
Confidence 47899999865 346666665543334455555554433 33222 2345778888999888877776553321111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+....|++.++|
T Consensus 201 s~~al~~La~~s~G 214 (620)
T PRK14948 201 EPEALTLVAQRSQG 214 (620)
T ss_pred CHHHHHHHHHHcCC
Confidence 12456788888888
No 100
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=55.19 E-value=45 Score=21.30 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=43.3
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeec-CCcEEecHHHHHHHHHHHhh
Q 041863 107 NIFLDVACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN-NNKITMHDLKQEFGQEIIQE 172 (197)
Q Consensus 107 ~~fl~la~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~-~~~~~mHdlv~~~a~~~~~~ 172 (197)
..+.+++--+.+.+...+........-.....++.|.+.+++.... +|.|++-.-+.+++......
T Consensus 9 ~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~~ 75 (91)
T smart00346 9 AVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSS 75 (91)
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHhc
Confidence 3344444444456666666655333223456799999999998764 66799988887777665543
No 101
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=55.00 E-value=33 Score=28.32 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=43.6
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhh
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
++|+|++.... ..+.|+..+..-.+++.+|++|.+.. +...+ +....+++.+++.++..+.+...
T Consensus 113 vviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 113 VYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 58889997553 35556655544446777777776644 22222 23568899999999998888753
No 102
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=52.82 E-value=1.3e+02 Score=24.92 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=53.2
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
.+|+|+++... .-..|+..+-.-.+++.+|++|.+.. +..++ +....+.+.+++.++..+.+....+ .+
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----~~--- 183 (334)
T PRK07993 111 VVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----MS--- 183 (334)
T ss_pred EEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC----CC---
Confidence 67889997653 45666655544446777777776654 44342 3345788999999999888865321 11
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
...+..++..++|
T Consensus 184 ~~~a~~~~~la~G 196 (334)
T PRK07993 184 QDALLAALRLSAG 196 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 1235677888888
No 103
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.24 E-value=68 Score=28.87 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=49.8
Q ss_pred EEEEeCCCChHHHHHhhc---------------cCCCCCCCcEEEEEeCChHHHHhcCC----ceeEecCCCCh-HHHHH
Q 041863 4 LIVFDDVTCFTQLESLIG---------------SLDWLTPVSRIIITTRNKQVLRNWEV----RKIYEIEALEY-HHALD 63 (197)
Q Consensus 4 LlVLDdv~~~~~~~~l~~---------------~~~~~~~gs~iivTTR~~~v~~~~~~----~~~~~l~~L~~-~~a~~ 63 (197)
.||+||+...-+|-++.| ..|..|..--|+-||....+...|+- ...+.++.++. ++..+
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHH
Confidence 689999976655533332 22223334456668888888888752 45778888887 77777
Q ss_pred HHHhhc-CCCCCCChhHHHHHHHHHHHc
Q 041863 64 LFSRHA-FKRNHLDVGYEKLSSNVMKCA 90 (197)
Q Consensus 64 L~~~~a-~~~~~~~~~~~~~~~~i~~~c 90 (197)
++...- |.. .+...++.+...+|
T Consensus 681 vl~~~n~fsd----~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 681 VLEELNIFSD----DEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHccCCCc----chhHHHHHHHhccc
Confidence 777643 222 23344555555444
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.17 E-value=1.1e+02 Score=25.89 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCcEEEEEeCChHHHHhc-----CCceeEecCCCChHHHHHHHHhhcCC
Q 041863 28 PVSRIIITTRNKQVLRNW-----EVRKIYEIEALEYHHALDLFSRHAFK 71 (197)
Q Consensus 28 ~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~a~~L~~~~a~~ 71 (197)
.+..||.||...+..... .....+.+++.+.++-.++|..+...
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 355677788655432211 12457889999999999999877643
No 105
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=49.33 E-value=69 Score=30.88 Aligned_cols=21 Identities=0% Similarity=-0.126 Sum_probs=17.4
Q ss_pred eEecCCCChHHHHHHHHhhcC
Q 041863 50 IYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 50 ~~~l~~L~~~~a~~L~~~~a~ 70 (197)
.+...|.+.++-.+++..++.
T Consensus 930 eIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 356789999999999988764
No 106
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=48.79 E-value=17 Score=27.68 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=22.7
Q ss_pred EEEEeCCCChH-----HHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTCFT-----QLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||.+-..- ..+.+...+....++.-||+|-|+..
T Consensus 118 lvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 118 LVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred EEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 79999995331 23333333332335678999999863
No 107
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=48.34 E-value=97 Score=22.31 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=43.8
Q ss_pred EEEEEEeCC------CChHHHHHhhccCCCCCCCcEEEEEeC-ChH----HHHhcC-CceeEecCCCChHHHHHHHHhhc
Q 041863 2 KVLIVFDDV------TCFTQLESLIGSLDWLTPVSRIIITTR-NKQ----VLRNWE-VRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 2 r~LlVLDdv------~~~~~~~~l~~~~~~~~~gs~iivTTR-~~~----v~~~~~-~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+-+||+.+. .....++.|...+....+++.+|+.+. ..+ ..+... ...++...++...+........+
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERA 137 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHH
Confidence 346677776 344567777777665567888888887 322 122222 23456677777777776666554
Q ss_pred CCCCCCChhHHHHHHHHHHHccC
Q 041863 70 FKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
....-. -.......++...|+
T Consensus 138 ~~~g~~--i~~~a~~~L~~~~~~ 158 (172)
T PF06144_consen 138 KKNGLK--IDPDAAQYLIERVGN 158 (172)
T ss_dssp HHTT-E--E-HHHHHHHHHHHTT
T ss_pred HHcCCC--CCHHHHHHHHHHhCh
Confidence 322111 123455566666655
No 108
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=47.82 E-value=22 Score=27.47 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK 39 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~ 39 (197)
.+||+|++-+. +++..++.. .+.|||+|++--..
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred eEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 57999999654 578887765 45799999998543
No 109
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=47.32 E-value=16 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEEeCCCCh--------HHHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTCF--------TQLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~~--------~~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||.+-.. +++-.++.. ..++.-||+|-|+..
T Consensus 100 lvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 100 LVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred EEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 7999999522 233333332 235678999999863
No 110
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=45.01 E-value=36 Score=30.87 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=18.2
Q ss_pred eeEecCCCChHHHHHHHHhhcC
Q 041863 49 KIYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 49 ~~~~l~~L~~~~a~~L~~~~a~ 70 (197)
..+.+.+++.++.++++.+.+.
T Consensus 346 ~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 346 AEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 4678899999999999988654
No 111
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=43.75 E-value=87 Score=25.64 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=42.8
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCCh-HHHHhc-CCceeEecCCCChHHHHHHHHhh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNK-QVLRNW-EVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
=++|+|++.... ....|+..+....+++.+|++|.+. .+.+.+ .....+++.+++.++..+.+...
T Consensus 92 KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred eEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 367888887653 3555555554444677777666443 334332 34578999999999998877754
No 112
>PRK14700 recombination factor protein RarA; Provisional
Probab=43.60 E-value=59 Score=26.71 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCcEEEE--EeCChHHHHh---cCCceeEecCCCChHHHHHHHHhhcCC----CCCCChhHHHHHHHHHHHccC
Q 041863 28 PVSRIII--TTRNKQVLRN---WEVRKIYEIEALEYHHALDLFSRHAFK----RNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 28 ~gs~iiv--TTR~~~v~~~---~~~~~~~~l~~L~~~~a~~L~~~~a~~----~~~~~~~~~~~~~~i~~~c~g 92 (197)
+|.-++| ||.|+.-.-. .+...++.+.+|+.++-.+++.+-... +.....-..+....|+..|+|
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G 79 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG 79 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC
Confidence 5665554 7776643211 134579999999999999999874421 111111235667889999999
No 113
>PRK08116 hypothetical protein; Validated
Probab=43.07 E-value=14 Score=29.63 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=19.6
Q ss_pred EEEEeCCC--ChHHH--HHhhccCCC-CCCCcEEEEEeCCh
Q 041863 4 LIVFDDVT--CFTQL--ESLIGSLDW-LTPVSRIIITTRNK 39 (197)
Q Consensus 4 LlVLDdv~--~~~~~--~~l~~~~~~-~~~gs~iivTTR~~ 39 (197)
||||||+. ....| +.|...+.. ..+|..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 79999993 22233 223222221 12456799999653
No 114
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=42.84 E-value=1.7e+02 Score=23.26 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChH-------HHHhcCCceeEecCCCChHHHHHHHHhhcCC
Q 041863 2 KVLIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQ-------VLRNWEVRKIYEIEALEYHHALDLFSRHAFK 71 (197)
Q Consensus 2 r~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~ 71 (197)
+-++|++++... ..++.|...+....++..+|+++-..+ ..........+...+++..+-...+...+..
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 126 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKK 126 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHH
Confidence 346888888653 346666555443345566666654221 1221123456677778887777776665432
Q ss_pred CCCCChhHHHHHHHHHHHccC
Q 041863 72 RNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~g 92 (197)
....- -.+.+..++..++|
T Consensus 127 ~g~~i--~~~a~~~l~~~~~~ 145 (302)
T TIGR01128 127 LGLRI--DPDAVQLLAELVEG 145 (302)
T ss_pred cCCCC--CHHHHHHHHHHhCc
Confidence 22111 13556777777776
No 115
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=40.95 E-value=28 Score=26.62 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=22.1
Q ss_pred EEEEeCCCCh-----HHHHHhhccCCCCCCCcEEEEEeCCh
Q 041863 4 LIVFDDVTCF-----TQLESLIGSLDWLTPVSRIIITTRNK 39 (197)
Q Consensus 4 LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~ 39 (197)
|+|||.+.-. -.++.+...+....+..-||+|-|+.
T Consensus 125 lviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 125 LVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred EEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 7899998422 22344433333233577899999875
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=39.37 E-value=55 Score=28.06 Aligned_cols=89 Identities=13% Similarity=0.232 Sum_probs=55.2
Q ss_pred CEEEEEEeCCCChH--HHHHhhccCCCCCCCcEEEE--EeCChHHH---HhcCCceeEecCCCChHHHHHHHHhhcC---
Q 041863 1 MKVLIVFDDVTCFT--QLESLIGSLDWLTPVSRIII--TTRNKQVL---RNWEVRKIYEIEALEYHHALDLFSRHAF--- 70 (197)
Q Consensus 1 kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~a~~L~~~~a~--- 70 (197)
||..|.+|.|...+ |-+.|+|.. .+|+-++| ||.|+... ..+....++.|++|..++-..+|.+-..
T Consensus 222 rkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 67889999997654 445555543 36775555 77776532 2223456889999999999988876221
Q ss_pred CCCC-----CC---hhHHHHHHHHHHHccC
Q 041863 71 KRNH-----LD---VGYEKLSSNVMKCAQG 92 (197)
Q Consensus 71 ~~~~-----~~---~~~~~~~~~i~~~c~g 92 (197)
.... +. .-...+..-++..|.|
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 1111 11 1123455667778888
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=38.49 E-value=89 Score=27.76 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=41.7
Q ss_pred EEEEEEeCCCCh---------HH-----HHHhhccCCCC--CCCcEEEEEeCChHHHHhc-----CCceeEecCCCChHH
Q 041863 2 KVLIVFDDVTCF---------TQ-----LESLIGSLDWL--TPVSRIIITTRNKQVLRNW-----EVRKIYEIEALEYHH 60 (197)
Q Consensus 2 r~LlVLDdv~~~---------~~-----~~~l~~~~~~~--~~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~ 60 (197)
+++|+||+++.. .+ +..|+..+... .++..||.||-........ .-...+.++..+.++
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 568999999742 11 23444333211 1345566677554432211 224568999999999
Q ss_pred HHHHHHhhcC
Q 041863 61 ALDLFSRHAF 70 (197)
Q Consensus 61 a~~L~~~~a~ 70 (197)
..++|..+..
T Consensus 370 r~~Il~~~l~ 379 (512)
T TIGR03689 370 AADIFSKYLT 379 (512)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 118
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=37.75 E-value=23 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEeCCCC--------hHHHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTC--------FTQLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~--------~~~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||.+-. .+++-.++.. ..++.-||+|-|+..
T Consensus 99 lvILDEi~~a~~~gll~~~~v~~~l~~---rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 99 LVILDEINYAVDYGLLSEEEVLDLLEN---RPESLEVVLTGRNAP 140 (172)
T ss_dssp EEEEETHHHHHHTTSS-HHHHHHHHHT---S-TT-EEEEE-SS--
T ss_pred EEEEcchHHHhHCCCccHHHHHHHHHc---CCCCeEEEEECCCCC
Confidence 799999842 2334344432 336788999999874
No 119
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=37.34 E-value=37 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=25.0
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeC
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTR 37 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR 37 (197)
+.+||+|.+-+. .++..++.. .|+||||+.|.-
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd 386 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGD 386 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCC
Confidence 358999999876 466666654 678999998874
No 120
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=37.10 E-value=74 Score=21.45 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=9.0
Q ss_pred EEEEEEeCCCC
Q 041863 2 KVLIVFDDVTC 12 (197)
Q Consensus 2 r~LlVLDdv~~ 12 (197)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 57899999963
No 121
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=34 Score=27.14 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=31.5
Q ss_pred EEEEEeCCCChHHHHHhh------ccCCCCCCCcEEEEEeCChHHHHhcCCceeE
Q 041863 3 VLIVFDDVTCFTQLESLI------GSLDWLTPVSRIIITTRNKQVLRNWEVRKIY 51 (197)
Q Consensus 3 ~LlVLDdv~~~~~~~~l~------~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~ 51 (197)
=|.|||..++.-+++.+. ..+. .+|+.+|+.|..+.++....+..++
T Consensus 164 kl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 164 KLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred CEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 378999998765544332 2222 2577788889889999887655544
No 122
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.25 E-value=1.2e+02 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=23.7
Q ss_pred EEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHh
Q 041863 4 LIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~ 44 (197)
++++|+.... .....+...+....++..||++|.+..+...
T Consensus 195 vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 195 TLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 6889998533 2222222222212236679999999887543
No 123
>PRK08181 transposase; Validated
Probab=35.20 E-value=21 Score=28.79 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=18.4
Q ss_pred EEEEeCCCCh---HHH-HHhhccCCCCCCCcEEEEEeCCh
Q 041863 4 LIVFDDVTCF---TQL-ESLIGSLDWLTPVSRIIITTRNK 39 (197)
Q Consensus 4 LlVLDdv~~~---~~~-~~l~~~~~~~~~gs~iivTTR~~ 39 (197)
||||||+... ..+ +.+...+...-.+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 8999999532 122 22322222111123588888754
No 124
>CHL00176 ftsH cell division protein; Validated
Probab=34.54 E-value=2.8e+02 Score=25.42 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=41.2
Q ss_pred EEEEEEeCCCCh------------H----HHHHhhccCCC--CCCCcEEEEEeCChHHHHh-c----CCceeEecCCCCh
Q 041863 2 KVLIVFDDVTCF------------T----QLESLIGSLDW--LTPVSRIIITTRNKQVLRN-W----EVRKIYEIEALEY 58 (197)
Q Consensus 2 r~LlVLDdv~~~------------~----~~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-~----~~~~~~~l~~L~~ 58 (197)
..+|+||+++.. . .+..++..+.. ...+-.||.||........ + .-...+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 358999999633 1 13344433221 2245567777766543322 1 1235778888888
Q ss_pred HHHHHHHHhhcCC
Q 041863 59 HHALDLFSRHAFK 71 (197)
Q Consensus 59 ~~a~~L~~~~a~~ 71 (197)
++-.++|..+...
T Consensus 356 ~~R~~IL~~~l~~ 368 (638)
T CHL00176 356 EGRLDILKVHARN 368 (638)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888876643
No 125
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=32.73 E-value=39 Score=21.61 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=35.1
Q ss_pred HhHHHHHHhhcCCCC--CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec--CCcEEe
Q 041863 104 KEKNIFLDVACFFQG--QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN--NNKITM 158 (197)
Q Consensus 104 ~~k~~fl~la~fp~~--~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~--~~~~~m 158 (197)
..-+.+.+++..+.+ .+.+.+..............++.|...+++.... +|.|.+
T Consensus 9 ~Al~~l~~la~~~~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L 67 (83)
T PF02082_consen 9 YALRILLYLARHPDGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRL 67 (83)
T ss_dssp HHHHHHHHHHCTTTSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceee
Confidence 344667788888765 4666666654333223456789999999998764 344443
No 126
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=31.68 E-value=1.1e+02 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred EEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhh
Q 041863 5 IVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 5 lVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
+|+|++...+ .-..++..+.....++.+|++|.+.. +...+ .....+++.+++.++..+.+...
T Consensus 117 ~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 117 ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4557776542 23333333322224566777777755 33222 23467889999999998888653
No 127
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=30.94 E-value=11 Score=28.26 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=7.5
Q ss_pred EEEEeCCCC
Q 041863 4 LIVFDDVTC 12 (197)
Q Consensus 4 LlVLDdv~~ 12 (197)
||||||+-.
T Consensus 111 lLilDDlG~ 119 (178)
T PF01695_consen 111 LLILDDLGY 119 (178)
T ss_dssp CEEEETCTS
T ss_pred Eecccccce
Confidence 789999964
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=30.58 E-value=3.2e+02 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCcEEEEEeCChHHHHh-----cCCceeEecCCCChHHHHHHHHhhcC
Q 041863 28 PVSRIIITTRNKQVLRN-----WEVRKIYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 28 ~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~L~~~~a~ 70 (197)
.+-.||.||........ ..-...+.++..+.++-.++|..+..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 34556667765432211 12345788888888888888887654
No 129
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=30.06 E-value=2.2e+02 Score=22.89 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=25.1
Q ss_pred CEEEEEEeCCCCh--HH----HHHhhccCCCCCCCcEEEEEeCChHHHHh
Q 041863 1 MKVLIVFDDVTCF--TQ----LESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (197)
Q Consensus 1 kr~LlVLDdv~~~--~~----~~~l~~~~~~~~~gs~iivTTR~~~v~~~ 44 (197)
+|.++|+||++.. +. ++.+...+. .++..+|+..-...+...
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~a 219 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKA 219 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHH
Confidence 5889999999863 22 333333222 267777776655544443
No 130
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=30.05 E-value=3.7e+02 Score=23.39 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=42.8
Q ss_pred EEEEEEeCCCCh-----------HHHHHhhccCCCCCCCcEEEEEeCChHHHHhcC------CceeEecCCCChHHHHHH
Q 041863 2 KVLIVFDDVTCF-----------TQLESLIGSLDWLTPVSRIIITTRNKQVLRNWE------VRKIYEIEALEYHHALDL 64 (197)
Q Consensus 2 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~------~~~~~~l~~L~~~~a~~L 64 (197)
|-+||+||.-.. .+|...+.. .+=..||++|-+....+... +-..+.|...+++.|.+.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 457899998422 235544432 23456888887766555432 345778999999999998
Q ss_pred HHhhcC
Q 041863 65 FSRHAF 70 (197)
Q Consensus 65 ~~~~a~ 70 (197)
...+..
T Consensus 225 V~~~L~ 230 (431)
T PF10443_consen 225 VLSQLD 230 (431)
T ss_pred HHHHhc
Confidence 877654
No 131
>PRK06921 hypothetical protein; Provisional
Probab=29.59 E-value=29 Score=27.82 Aligned_cols=7 Identities=29% Similarity=0.805 Sum_probs=6.6
Q ss_pred EEEEeCC
Q 041863 4 LIVFDDV 10 (197)
Q Consensus 4 LlVLDdv 10 (197)
||||||+
T Consensus 180 lLiIDDl 186 (266)
T PRK06921 180 VLFIDDL 186 (266)
T ss_pred EEEEecc
Confidence 8999999
No 132
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.43 E-value=49 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=23.2
Q ss_pred EEEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHH
Q 041863 3 VLIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVL 42 (197)
Q Consensus 3 ~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~ 42 (197)
-+++|||+-.. ..-+.+...+... |..|++||.+....
T Consensus 304 pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 304 PILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHL 344 (365)
T ss_pred CEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhc
Confidence 47899999643 2233444443211 56899999876543
No 133
>PRK10536 hypothetical protein; Provisional
Probab=29.40 E-value=44 Score=26.88 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=24.0
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN 38 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~ 38 (197)
-+||+|.+.+. .+...++.. .+.+|++|+|--.
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~ 212 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDI 212 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCCh
Confidence 47999999865 456666654 4579999998753
No 134
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=28.63 E-value=1.3e+02 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=25.3
Q ss_pred cccchHHHhhCcCceeecCCc---EEecHHHHHHHHH
Q 041863 135 PEIGISFLVDKSLIVISNNNK---ITMHDLKQEFGQE 168 (197)
Q Consensus 135 ~~~~l~~L~~~sll~~~~~~~---~~mHdlv~~~a~~ 168 (197)
....+..|.+.+||.....|+ |++.+-+.++...
T Consensus 47 vS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~~~~~~~~ 83 (117)
T PRK10141 47 ISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAK 83 (117)
T ss_pred HHHHHHHHHHCCceEEEEEcCEEEEEECchHHHHHHH
Confidence 356799999999999888776 8887655444443
No 135
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=27.63 E-value=3.3e+02 Score=22.05 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=38.7
Q ss_pred EEEEEeCCC-----ChHHHHHhhccCCCCCCCcEEEEEeCCh-----HHHHhcC-CceeEecCC---CChHHHHHHHHhh
Q 041863 3 VLIVFDDVT-----CFTQLESLIGSLDWLTPVSRIIITTRNK-----QVLRNWE-VRKIYEIEA---LEYHHALDLFSRH 68 (197)
Q Consensus 3 ~LlVLDdv~-----~~~~~~~l~~~~~~~~~gs~iivTTR~~-----~v~~~~~-~~~~~~l~~---L~~~~a~~L~~~~ 68 (197)
-++|++|.. ..+.++.|...+....+.+.+|+++..+ ...+... ...+....+ .+.++-.......
T Consensus 63 rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~ 142 (326)
T PRK07452 63 RLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERT 142 (326)
T ss_pred eEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHH
Confidence 356777762 2233444444443333566677654332 1111111 122333333 3334444444444
Q ss_pred cCCCCCCChhHHHHHHHHHHHccC
Q 041863 69 AFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
+-.....- ..+.+..++..+|+
T Consensus 143 ~~~~g~~i--~~~a~~~L~~~~g~ 164 (326)
T PRK07452 143 AQELGVKL--TPEAAELLAEAVGN 164 (326)
T ss_pred HHHcCCCC--CHHHHHHHHHHhCc
Confidence 42222111 23566777887776
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.38 E-value=3.6e+02 Score=23.04 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=27.3
Q ss_pred CCcEEEEEeCChHHHHhc-----CCceeEecCCCChHHHHHHHHhhc
Q 041863 28 PVSRIIITTRNKQVLRNW-----EVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 28 ~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
.+..||+||...+..... .....+.++..+.++-.++|..+.
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 456788888765543221 224567888888888777777554
No 137
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.35 E-value=1.5e+02 Score=25.10 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=52.7
Q ss_pred ccCCCHHhHHHHHHhhcCCCCCCHHHHHHHHHHcCCCc--ccchHHHhhCcCceeec-CC---cEEecHHHHHHHHHH
Q 041863 98 YDGLDDKEKNIFLDVACFFQGQDVNLVMNFLNASGFYP--EIGISFLVDKSLIVISN-NN---KITMHDLKQEFGQEI 169 (197)
Q Consensus 98 ~~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~~g~~~--~~~l~~L~~~sll~~~~-~~---~~~mHdlv~~~a~~~ 169 (197)
|..||+-+|.+.+.+-..+.+++. ..+..|...+... +..++.|.+..+++... .| .|.+++..+.=.+..
T Consensus 25 fR~LP~LAK~~VmrLL~~~~pv~~-~~l~~Wv~~~~~~~~~~al~~L~~L~Ii~~~~~~~~~~~~~Ln~~F~~~Lr~a 101 (366)
T PF03849_consen 25 FRSLPPLAKQYVMRLLFVEQPVPQ-ADLESWVKPESKKEHDEALKRLRSLHIIQESESPGGKQQYQLNPIFRKNLRNA 101 (366)
T ss_pred HHhccHHHHHHHHHHHhcCCCcCH-HHHHHHhCccchHHHHHHHHHHhhCeeEeeccCCCCceeEEeCHHHHHHHHHH
Confidence 446899899888888777766665 5577898755432 45799999999998765 32 499999988766554
No 138
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=27.16 E-value=57 Score=20.00 Aligned_cols=40 Identities=8% Similarity=-0.070 Sum_probs=29.0
Q ss_pred CCCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 100 GLDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 100 ~L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
.|++....++.++..-+.. ++.+.++ .+|..+....+..+
T Consensus 5 ~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~~w~~~~~~~~~~l 46 (77)
T PF00486_consen 5 KLTPKEFRLLELLLRNPGRVVSREELIEALWGDEEDVSDNSL 46 (77)
T ss_dssp ESSHHHHHHHHHHHHTTTSEEEHHHHHHHHTSSSSTTCTHHH
T ss_pred ecCHHHHHHHHHHHhCCCCCCCHHHhCChhhhcccccchhhH
Confidence 3778888899998888776 5887777 57887764444433
No 139
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=26.99 E-value=1.1e+02 Score=18.63 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=23.7
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHHH-HHHHcC
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVMN-FLNASG 132 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~~-~w~~~g 132 (197)
|++....+|.++..-+.. ++.+.++. +|...+
T Consensus 6 Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~ 39 (78)
T smart00862 6 LTPKEFRLLELLLRNPGRVVSREELLEAVWGDDD 39 (78)
T ss_pred cCHHHHHHHHHHHhCCCCccCHHHHHHHHcCCCC
Confidence 567777789998888876 68777775 686543
No 140
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.81 E-value=1.4e+02 Score=22.88 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=25.9
Q ss_pred EEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 4 LIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 4 LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
+++||+.-.. . .+..++..+. .|..||++|.+...... ...++.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM---KNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHhh--CCEEEEe
Confidence 7889988532 2 2233333222 35678888888877654 3454444
No 141
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=26.33 E-value=1.4e+02 Score=23.01 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=26.0
Q ss_pred EEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 4 LIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 4 LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
+++||+.... . .+..++.... .|..||++|.+...+.. ...++.+
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~~~~--~d~v~~l 210 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIRN--ADLIAVL 210 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 7899998543 2 2223332222 46678888888777653 3444444
No 142
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=26.22 E-value=1.4e+02 Score=22.59 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=24.8
Q ss_pred EEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 4 LIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
+++||+.... ..-+.+...+.....+..||++|.+...... ...++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 7899998633 1112222211111234568888888766654 2444444
No 143
>PRK06526 transposase; Provisional
Probab=25.89 E-value=38 Score=26.95 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=18.1
Q ss_pred EEEEeCCCCh---HHHH-HhhccCCC-CCCCcEEEEEeCCh
Q 041863 4 LIVFDDVTCF---TQLE-SLIGSLDW-LTPVSRIIITTRNK 39 (197)
Q Consensus 4 LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR~~ 39 (197)
|||+||+... .... .+...+.. ...++ +|+||..+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 7999999643 1222 22222111 12344 88888754
No 144
>PRK11569 transcriptional repressor IclR; Provisional
Probab=25.69 E-value=1.7e+02 Score=23.34 Aligned_cols=53 Identities=2% Similarity=-0.092 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeec-CCcEEecHHHHHHHHH
Q 041863 116 FQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN-NNKITMHDLKQEFGQE 168 (197)
Q Consensus 116 p~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~-~~~~~mHdlv~~~a~~ 168 (197)
..+.....+.+...-..-.....+..|++.+++...+ .++|++-.-+..++..
T Consensus 41 ~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~Lg~~ 94 (274)
T PRK11569 41 NGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFIVGSS 94 (274)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHHHHHHH
Confidence 3345666666655444444567899999999998765 6778876665555443
No 145
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.58 E-value=37 Score=28.17 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=18.5
Q ss_pred EEEEeCCCCh--HH--HHHhhccCCCC-CCCcEEEEEeCC
Q 041863 4 LIVFDDVTCF--TQ--LESLIGSLDWL-TPVSRIIITTRN 38 (197)
Q Consensus 4 LlVLDdv~~~--~~--~~~l~~~~~~~-~~gs~iivTTR~ 38 (197)
||||||+... .. .+.|...+... ..+..+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 7999999422 22 23333322211 134568888864
No 146
>PF14516 AAA_35: AAA-like domain
Probab=25.57 E-value=1.7e+02 Score=24.23 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=28.8
Q ss_pred ceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 48 RKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 48 ~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
...+.|++++.+|..+|...+-.. .. ....++|....||
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgG 231 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGG 231 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCC
Confidence 457889999999999999876422 11 1227888888999
No 147
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=25.42 E-value=96 Score=22.54 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=31.4
Q ss_pred HhHHHHHHhhcCCCC-CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec
Q 041863 104 KEKNIFLDVACFFQG-QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN 152 (197)
Q Consensus 104 ~~k~~fl~la~fp~~-~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~ 152 (197)
..-++++|+|..+.+ ++...+...-....-.-+..+..|...++|....
T Consensus 9 YAlr~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~r 58 (153)
T PRK11920 9 YAIRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVR 58 (153)
T ss_pred HHHHHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 455778899977665 3555554433222222345688999999998765
No 148
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=25.36 E-value=4.9e+02 Score=23.25 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred EEEEeCCCC--hHHHHHhhccCCCCCCCcEEEEEeCChH-HHHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 4 LIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 4 LlVLDdv~~--~~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
..|+|.|.- ...|..|+..+-.--+.-+.|+.|.+.+ +... .+....|.+..++.++-...+...+....-. -.
T Consensus 122 VyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e 199 (515)
T COG2812 122 VYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IE 199 (515)
T ss_pred EEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cC
Confidence 467899964 4568888876654445665555555543 3222 2345688999999998888777665433322 12
Q ss_pred HHHHHHHHHHccC
Q 041863 80 EKLSSNVMKCAQG 92 (197)
Q Consensus 80 ~~~~~~i~~~c~g 92 (197)
.+....|++..+|
T Consensus 200 ~~aL~~ia~~a~G 212 (515)
T COG2812 200 EDALSLIARAAEG 212 (515)
T ss_pred HHHHHHHHHHcCC
Confidence 3445566666666
No 149
>PRK07413 hypothetical protein; Validated
Probab=25.11 E-value=63 Score=27.51 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEeCCCChH-----HHHHhhccCCCCCCCcEEEEEeCC
Q 041863 4 LIVFDDVTCFT-----QLESLIGSLDWLTPVSRIIITTRN 38 (197)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~ 38 (197)
|||||.+-..- ..+.+...+....++.-||+|-|+
T Consensus 308 lvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~ 347 (382)
T PRK07413 308 TIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRC 347 (382)
T ss_pred EEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCC
Confidence 79999995321 223333333223356789999998
No 150
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=24.63 E-value=3.4e+02 Score=21.06 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=48.4
Q ss_pred EEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhcCC--------------ceeEecCCCChHHHHHHHHhh
Q 041863 6 VFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNWEV--------------RKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 6 VLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~~~--------------~~~~~l~~L~~~~a~~L~~~~ 68 (197)
|+|++... .....|+..+-.-.+++.+|+.|.+.. +...+.. .-.+.+.+|+.++..+.+...
T Consensus 59 iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 59 IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 46777644 346666665544445666666666554 3333211 124678999999999999763
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCccccc
Q 041863 69 AFKRNHLDVGYEKLSSNVMKCAQGVLKIS 97 (197)
Q Consensus 69 a~~~~~~~~~~~~~~~~i~~~c~g~l~~s 97 (197)
.-.+.. ...+....|.....|+++-.
T Consensus 139 ~ke~~~---~~~ea~~lIa~la~~s~r~~ 164 (206)
T PRK08485 139 EKENKL---SKEELKELIESLLKECVKYK 164 (206)
T ss_pred HHcccc---cHHHHHHHHHHHHHHHHHHH
Confidence 211111 22333444555555544433
No 151
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=24.17 E-value=2.4e+02 Score=23.07 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=40.2
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSR 67 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~ 67 (197)
=.+|+|+++... ....|+..+-.-.+++.+|++|.+.. +..++ +....+++.+ +.++..+.+..
T Consensus 106 kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 106 QVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred EEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 367899998653 46777766655456677777776553 44443 2345677766 66666666653
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=24.14 E-value=1.6e+02 Score=21.53 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred EEEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 3 VLIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 3 ~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
=+++||+.... ..-+.+...+.....+..||++|.+...... ...++.+
T Consensus 118 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 118 PIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 37899998643 1122222111111236778999988877653 3444443
No 153
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.78 E-value=2.8e+02 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=26.8
Q ss_pred EEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHhc
Q 041863 4 LIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRNW 45 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~ 45 (197)
-||||.|+.. ..-..+...+..-+.++.||+.|-.+.||...
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~a 500 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMA 500 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhh
Confidence 4899999853 11122222221134588999999999998764
No 154
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=23.77 E-value=1.6e+02 Score=22.06 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred EEEEeCCCCh---HHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 4 LIVFDDVTCF---TQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 4 LlVLDdv~~~---~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
+++||+.... ...+.+...+.....|..||++|.+...+.. ...++.+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 7889998533 2222222222111236778888888776654 2454444
No 155
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=23.49 E-value=3.1e+02 Score=21.70 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=36.9
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCC----------------CCCCcEEEEEeCChHHHH-------hcCCceeEecCCCC
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDW----------------LTPVSRIIITTRNKQVLR-------NWEVRKIYEIEALE 57 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~----------------~~~gs~iivTTR~~~v~~-------~~~~~~~~~l~~L~ 57 (197)
..|++|++... +....|...+.. ..++.+||+|+-...-.. ....-..+.++..+
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence 47899999854 333333332211 114668888886432110 00112355677777
Q ss_pred hHHHHHHHHhhc
Q 041863 58 YHHALDLFSRHA 69 (197)
Q Consensus 58 ~~~a~~L~~~~a 69 (197)
.++-.+++..+.
T Consensus 187 ~~~e~~Il~~~~ 198 (262)
T TIGR02640 187 IDTETAILRAKT 198 (262)
T ss_pred HHHHHHHHHHhh
Confidence 777778877764
No 156
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=23.17 E-value=1.4e+02 Score=23.95 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=27.8
Q ss_pred EEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHH
Q 041863 4 LIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLR 43 (197)
Q Consensus 4 LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~ 43 (197)
+|++|.+-..+.+..+...+. .|..||+||-+..+..
T Consensus 197 villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 197 VIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred EEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 689999988877777766543 4778999998766643
No 157
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=23.03 E-value=2.1e+02 Score=22.66 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=35.4
Q ss_pred hcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeec-CCcEEecHHHHHHH
Q 041863 113 ACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN-NNKITMHDLKQEFG 166 (197)
Q Consensus 113 a~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~-~~~~~mHdlv~~~a 166 (197)
+-.+.+.....+.+......-.....++.|.+.+++.... +++|++-.-+..++
T Consensus 21 ~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 21 NRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLS 75 (263)
T ss_pred HhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHH
Confidence 3334446777777766544444567899999999998765 56677654444333
No 158
>PRK07413 hypothetical protein; Validated
Probab=23.01 E-value=76 Score=27.03 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEeCCCChH-----HHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTCFT-----QLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||.+-..- ..+.+...+....++.-||+|-|+..
T Consensus 128 lvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap 169 (382)
T PRK07413 128 VVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAP 169 (382)
T ss_pred EEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 79999995331 12333333332335778999999864
No 159
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.23 E-value=1.8e+02 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=26.4
Q ss_pred EEEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 3 VLIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 3 ~LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
-+|+||+.... . .+..++..+. .|..||++|.+...... ...++.+
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 37899998533 2 2333333322 26678888888877654 3444444
No 160
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.17 E-value=67 Score=17.89 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=24.4
Q ss_pred HHhHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCce
Q 041863 103 DKEKNIFLDVACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIV 149 (197)
Q Consensus 103 ~~~k~~fl~la~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~ 149 (197)
...+..+.++.--|. ++...+.....-..-....+++.|.+.++|+
T Consensus 3 ~~~~~Il~~l~~~~~-~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 3 ETQRKILNYLRENPR-ITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHHCTT-S-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 334445555544332 5666665555332222455788888888764
No 161
>PRK09183 transposase/IS protein; Provisional
Probab=22.02 E-value=45 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=18.5
Q ss_pred EEEEeCCCCh----HHHHHhhccCCC-CCCCcEEEEEeCCh
Q 041863 4 LIVFDDVTCF----TQLESLIGSLDW-LTPVSRIIITTRNK 39 (197)
Q Consensus 4 LlVLDdv~~~----~~~~~l~~~~~~-~~~gs~iivTTR~~ 39 (197)
++|+||+... ...+.|...+.. ...++ +|+||...
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 8999999642 222223332211 12344 88888643
No 162
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=22.01 E-value=1e+02 Score=16.66 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=17.8
Q ss_pred ccchHHHhhCcCceeecCCcEEec
Q 041863 136 EIGISFLVDKSLIVISNNNKITMH 159 (197)
Q Consensus 136 ~~~l~~L~~~sll~~~~~~~~~mH 159 (197)
...+..|.+.+++... .+.|.+|
T Consensus 26 ~~~l~~L~~~g~l~~~-~~~~~i~ 48 (48)
T smart00419 26 SRTLKRLEKEGLISRE-GGRIVIL 48 (48)
T ss_pred HHHHHHHHHCCCEEEe-CCEEEEC
Confidence 4568999999999876 4677765
No 163
>PRK12377 putative replication protein; Provisional
Probab=21.87 E-value=57 Score=25.91 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=7.1
Q ss_pred EEEEeCCC
Q 041863 4 LIVFDDVT 11 (197)
Q Consensus 4 LlVLDdv~ 11 (197)
||||||+.
T Consensus 166 LLiIDDlg 173 (248)
T PRK12377 166 LLVLDEIG 173 (248)
T ss_pred EEEEcCCC
Confidence 89999993
No 164
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=21.53 E-value=1e+02 Score=21.92 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=33.9
Q ss_pred HhHHHHHHhhcCCCC--CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec
Q 041863 104 KEKNIFLDVACFFQG--QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN 152 (197)
Q Consensus 104 ~~k~~fl~la~fp~~--~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~ 152 (197)
..-++..+++.++++ .+...+........-.....+..|...+||....
T Consensus 9 YAl~~~i~la~~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~ 59 (141)
T PRK11014 9 YGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVR 59 (141)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEec
Confidence 344566778888776 3566666665544444566789999999998765
No 165
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=21.08 E-value=1.7e+02 Score=18.56 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=25.7
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
|++.....+.+|..-|.. ++.+.+. .+|......++..+
T Consensus 24 Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~l 64 (95)
T cd00383 24 LTPKEFELLELLARNPGRVLSREQLLEAVWGDDYDVDDRTV 64 (95)
T ss_pred eCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCCCCCCcccH
Confidence 567777888888877766 5777776 47865543334333
No 166
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=20.80 E-value=80 Score=22.91 Aligned_cols=49 Identities=18% Similarity=0.039 Sum_probs=33.1
Q ss_pred HhHHHHHHhhcCCCC--CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec
Q 041863 104 KEKNIFLDVACFFQG--QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN 152 (197)
Q Consensus 104 ~~k~~fl~la~fp~~--~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~ 152 (197)
..-+++.|+|..+.+ .+.+.+...-....-.-+..+..|...+||....
T Consensus 9 yal~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~r 59 (150)
T COG1959 9 YALRALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVR 59 (150)
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeec
Confidence 455788899999876 3556655544333223355688899999998665
No 167
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=20.52 E-value=4.4e+02 Score=23.22 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=19.4
Q ss_pred EEEeCCCCh--HHHHHhhccCCCCC-----------CCcEEEEEeCCh
Q 041863 5 IVFDDVTCF--TQLESLIGSLDWLT-----------PVSRIIITTRNK 39 (197)
Q Consensus 5 lVLDdv~~~--~~~~~l~~~~~~~~-----------~gs~iivTTR~~ 39 (197)
|+||+|... .....|...+.... ...+||.||...
T Consensus 285 L~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 285 LFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred EEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 789999765 33344443332111 245888888543
No 168
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=20.44 E-value=2.3e+02 Score=22.32 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=40.8
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeec-CCcEEecHHHHHHHHHHH
Q 041863 108 IFLDVACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN-NNKITMHDLKQEFGQEII 170 (197)
Q Consensus 108 ~fl~la~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~-~~~~~mHdlv~~~a~~~~ 170 (197)
++-+++--|.+.....+.+......-.+...+..|++.+++...+ +|+|++=.-+-.++....
T Consensus 9 iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~lg~~~l 72 (246)
T COG1414 9 ILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLELGAAAL 72 (246)
T ss_pred HHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHHHHHHHH
Confidence 344444444444566666655444344567899999999999988 678888666655554433
No 169
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=20.19 E-value=2e+02 Score=22.49 Aligned_cols=45 Identities=7% Similarity=0.213 Sum_probs=25.5
Q ss_pred EEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec
Q 041863 4 LIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI 53 (197)
Q Consensus 4 LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l 53 (197)
+++||+.-.. . .+..++... ..+..||++|.+...... ...++.+
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~---~~~~tiii~sh~~~~~~~--~dri~~l 227 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA---FADRTVVTIAHRVSTILD--ADLVLVL 227 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh---cCCCEEEEEecChHHHHh--CCEEEEE
Confidence 6889988532 2 222222222 236778888888877664 3444433
No 170
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=20.03 E-value=52 Score=26.16 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.6
Q ss_pred EEEEeCCCC
Q 041863 4 LIVFDDVTC 12 (197)
Q Consensus 4 LlVLDdv~~ 12 (197)
||||||+-.
T Consensus 170 lLIiDDlG~ 178 (254)
T COG1484 170 LLIIDDIGY 178 (254)
T ss_pred EEEEecccC
Confidence 899999953
No 171
>PRK13695 putative NTPase; Provisional
Probab=20.01 E-value=3.1e+02 Score=19.84 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEeCCCChHH----H-HHhhccCCCCCCCcEEEEEeCChHHHH
Q 041863 4 LIVFDDVTCFTQ----L-ESLIGSLDWLTPVSRIIITTRNKQVLR 43 (197)
Q Consensus 4 LlVLDdv~~~~~----~-~~l~~~~~~~~~gs~iivTTR~~~v~~ 43 (197)
+||+|.++..+. + +.+...+ ..|..+|+|+.+..+..
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~ 140 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHP 140 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHH
Confidence 689998775422 2 2222222 13556888888765543
Done!