Query 041863
Match_columns 197
No_of_seqs 215 out of 1301
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4E-32 1.4E-36 236.0 12.4 165 1-174 243-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-29 2.2E-33 231.2 9.1 163 1-173 236-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 2.1E-25 7.2E-30 194.7 8.9 158 1-169 236-448 (591)
4 1vt4_I APAF-1 related killer D 99.9 8E-26 2.7E-30 204.7 4.5 150 1-166 244-436 (1221)
5 2qen_A Walker-type ATPase; unk 98.4 9.1E-07 3.1E-11 71.3 8.3 159 2-167 129-349 (350)
6 2fna_A Conserved hypothetical 98.3 3E-07 1E-11 74.3 3.3 156 2-166 138-356 (357)
7 1w5s_A Origin recognition comp 98.1 8.3E-06 2.9E-10 67.3 8.2 159 1-162 138-387 (412)
8 1fnn_A CDC6P, cell division co 97.3 0.00039 1.3E-08 56.7 6.3 169 2-173 126-387 (389)
9 1njg_A DNA polymerase III subu 97.1 0.0012 4.1E-08 49.5 6.5 89 2-92 127-219 (250)
10 2qby_A CDC6 homolog 1, cell di 96.9 0.0021 7.1E-08 52.1 6.7 68 2-69 129-210 (386)
11 2qby_B CDC6 homolog 3, cell di 96.9 0.022 7.4E-07 46.2 12.8 142 4-152 136-340 (384)
12 2v1u_A Cell division control p 96.6 0.0093 3.2E-07 48.2 8.7 147 1-151 130-351 (387)
13 2chg_A Replication factor C sm 95.8 0.009 3.1E-07 44.1 4.3 89 2-92 103-195 (226)
14 1sxj_B Activator 1 37 kDa subu 95.1 0.028 9.6E-07 44.3 5.3 89 2-92 108-200 (323)
15 1hqc_A RUVB; extended AAA-ATPa 93.7 0.12 4.1E-06 40.8 5.9 62 29-92 138-202 (324)
16 2chq_A Replication factor C sm 92.7 0.58 2E-05 36.4 8.6 89 2-92 103-195 (319)
17 1iqp_A RFCS; clamp loader, ext 92.7 0.096 3.3E-06 41.2 3.9 89 2-92 111-203 (327)
18 1jr3_A DNA polymerase III subu 90.6 0.44 1.5E-05 38.2 5.8 89 2-92 120-212 (373)
19 1a5t_A Delta prime, HOLB; zinc 89.3 1.4 4.9E-05 35.0 7.8 84 2-92 109-196 (334)
20 3pfi_A Holliday junction ATP-d 87.4 1.4 4.6E-05 34.9 6.5 61 30-92 155-218 (338)
21 3bos_A Putative DNA replicatio 86.3 0.3 1E-05 36.3 1.9 87 3-92 106-208 (242)
22 1sxj_E Activator 1 40 kDa subu 83.8 1.7 5.9E-05 34.4 5.4 88 3-92 136-228 (354)
23 1d2n_A N-ethylmaleimide-sensit 80.8 6.7 0.00023 29.8 7.6 84 2-92 125-228 (272)
24 2z4s_A Chromosomal replication 79.8 1.8 6.3E-05 35.9 4.4 87 3-92 196-297 (440)
25 3h4m_A Proteasome-activating n 79.5 3.2 0.00011 31.8 5.4 44 28-71 155-203 (285)
26 1jr3_D DNA polymerase III, del 77.6 6.6 0.00023 31.0 6.9 89 2-92 77-176 (343)
27 3syl_A Protein CBBX; photosynt 75.9 3.5 0.00012 31.9 4.8 64 4-69 133-217 (309)
28 1sxj_A Activator 1 95 kDa subu 75.8 3.6 0.00012 34.9 5.1 86 2-92 149-243 (516)
29 3u61_B DNA polymerase accessor 74.9 2.8 9.7E-05 32.8 4.0 61 2-62 106-171 (324)
30 2qz4_A Paraplegin; AAA+, SPG7, 74.1 10 0.00035 28.2 6.9 68 2-69 99-190 (262)
31 1sxj_D Activator 1 41 kDa subu 72.1 5.2 0.00018 31.4 4.9 88 3-92 135-226 (353)
32 1l8q_A Chromosomal replication 69.9 16 0.00055 28.4 7.4 84 3-90 100-198 (324)
33 3eie_A Vacuolar protein sortin 67.5 22 0.00076 27.7 7.7 69 3-71 112-199 (322)
34 2qp9_X Vacuolar protein sortin 66.5 36 0.0012 27.0 8.9 87 2-92 144-251 (355)
35 3pvs_A Replication-associated 65.9 9.6 0.00033 31.7 5.4 90 2-92 107-206 (447)
36 2zan_A Vacuolar protein sortin 65.5 37 0.0013 28.0 9.0 89 2-92 228-335 (444)
37 2gno_A DNA polymerase III, gam 65.0 4 0.00014 32.2 2.8 66 3-69 84-152 (305)
38 1jbk_A CLPB protein; beta barr 64.0 6.4 0.00022 27.4 3.6 62 2-65 116-194 (195)
39 1xwi_A SKD1 protein; VPS4B, AA 63.8 41 0.0014 26.3 8.6 69 2-70 106-193 (322)
40 1g5t_A COB(I)alamin adenosyltr 56.4 4.5 0.00015 29.9 1.6 34 4-40 123-164 (196)
41 3vfd_A Spastin; ATPase, microt 56.3 57 0.002 26.1 8.4 62 29-92 252-316 (389)
42 1sxj_C Activator 1 40 kDa subu 54.7 26 0.00088 27.5 5.9 88 3-92 112-203 (340)
43 3uk6_A RUVB-like 2; hexameric 54.0 22 0.00075 28.0 5.5 83 3-91 191-292 (368)
44 3d8b_A Fidgetin-like protein 1 52.6 35 0.0012 27.1 6.5 41 29-69 221-264 (357)
45 4aby_A DNA repair protein RECN 50.3 23 0.00079 28.5 5.1 39 3-44 317-361 (415)
46 3ec2_A DNA replication protein 33.4 11 0.00039 26.4 0.6 34 3-38 102-142 (180)
47 3mq0_A Transcriptional repress 30.8 89 0.0031 23.8 5.4 55 116-170 43-97 (275)
48 3i71_A Ethanolamine utilizatio 29.8 36 0.0012 19.8 2.2 55 105-160 5-59 (68)
49 2kjq_A DNAA-related protein; s 29.2 46 0.0016 22.8 3.2 33 4-38 86-124 (149)
50 3rjp_A COVR; winged helix-turn 27.3 45 0.0015 20.7 2.6 39 100-138 22-62 (96)
51 3cf0_A Transitional endoplasmi 26.7 1.9E+02 0.0065 22.0 6.7 42 28-69 153-199 (301)
52 3pt1_A UPF0364 protein YMR027W 26.3 1.7E+02 0.006 24.5 6.6 98 2-113 249-375 (471)
53 2jzy_A Transcriptional regulat 25.2 59 0.002 21.0 3.0 39 101-139 29-69 (112)
54 3k69_A Putative transcription 25.0 85 0.0029 21.9 4.0 49 104-152 13-62 (162)
55 3q9v_A DNA-binding response re 24.9 71 0.0024 21.5 3.4 40 100-139 60-101 (133)
56 2z9m_A Response regulator YYCF 23.8 63 0.0022 21.1 3.0 39 101-139 37-77 (120)
57 3hu3_A Transitional endoplasmi 23.8 1.4E+02 0.0049 24.9 5.8 43 28-70 339-386 (489)
58 3zq7_A KDP operon transcriptio 23.8 42 0.0014 21.1 2.0 39 101-139 29-69 (102)
59 2gkw_B Tumor necrosis factor r 22.9 60 0.0021 15.1 1.8 14 26-39 7-20 (26)
60 2pmu_A Response regulator PHOP 22.8 76 0.0026 20.3 3.2 37 101-137 35-73 (110)
61 3pxi_A Negative regulator of g 22.2 1E+02 0.0035 27.2 4.8 65 4-68 582-674 (758)
62 1gxq_A PHOB, phosphate regulon 22.0 62 0.0021 20.5 2.6 36 101-136 32-69 (106)
63 3n70_A Transport activator; si 21.6 47 0.0016 22.3 2.0 35 4-38 79-115 (145)
64 2zxj_A Transcriptional regulat 21.4 1.1E+02 0.0038 20.2 3.8 39 101-139 37-77 (120)
65 2heo_A Z-DNA binding protein 1 20.8 42 0.0014 19.6 1.4 23 136-158 43-65 (67)
66 1ojl_A Transcriptional regulat 20.5 2.2E+02 0.0074 21.8 6.0 10 4-13 99-108 (304)
67 1e69_A Chromosome segregation 20.4 67 0.0023 25.0 2.9 38 4-44 244-287 (322)
68 1ofh_A ATP-dependent HSL prote 20.1 1.9E+02 0.0065 21.6 5.5 20 49-68 195-214 (310)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=4e-32 Score=235.97 Aligned_cols=165 Identities=14% Similarity=0.182 Sum_probs=137.6
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhcC-CceeEecCCCChHHHHHHHHhhcCCCCCCChhH
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWE-VRKIYEIEALEYHHALDLFSRHAFKRNHLDVGY 79 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~-~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~ 79 (197)
||+||||||||+.+++ .+ +. .+||+||||||++.++..++ ...+|++++|+.++||+||.++++.... .+.+
T Consensus 243 kr~LlVLDdv~~~~~~-~~-~~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 243 PNTLFVFDDVVQEETI-RW-AQ----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp TTEEEEEEEECCHHHH-HH-HH----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred CcEEEEEECCCCchhh-cc-cc----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 4899999999998876 22 21 26999999999999998876 4468999999999999999999987643 3578
Q ss_pred HHHHHHHHHHccC-------------------------------------cccccccCCCHHhHHHHH-----------H
Q 041863 80 EKLSSNVMKCAQG-------------------------------------VLKISYDGLDDKEKNIFL-----------D 111 (197)
Q Consensus 80 ~~~~~~i~~~c~g-------------------------------------~l~~s~~~L~~~~k~~fl-----------~ 111 (197)
.+++++|+++||| ++.+||+.||++.|.||+ |
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ 395 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAF 395 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhh
Confidence 8899999999999 678999999999999999 9
Q ss_pred hhcCCCCCCHHHHHHHHHHc--CCCcc-----------cchHHHhhCcCceeecC---CcEEecHHHHHHHHHHHhhhc
Q 041863 112 VACFFQGQDVNLVMNFLNAS--GFYPE-----------IGISFLVDKSLIVISNN---NKITMHDLKQEFGQEIIQEES 174 (197)
Q Consensus 112 la~fp~~~~~~~l~~~w~~~--g~~~~-----------~~l~~L~~~sll~~~~~---~~~~mHdlv~~~a~~~~~~e~ 174 (197)
||+||++++.. +.+|+++ |++.. .+|++|+++||+++... ++|+|||+||+||++++.+++
T Consensus 396 ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 396 AVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp GGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999987555 8899999 77632 26999999999998753 359999999999998877664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=6.3e-29 Score=231.21 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=142.4
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHh-cCCceeEecCC-CChHHHHHHHHhhcCCCCCCChh
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRN-WEVRKIYEIEA-LEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~~~~l~~-L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
||+||||||||+..+|+.+ ++||+||||||++.++.. .+....+.+.+ |+.++|++||...++... +.
T Consensus 236 ~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~ 305 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---ED 305 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TT
T ss_pred CCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hh
Confidence 4899999999999888765 469999999999999854 45567889996 999999999999885432 34
Q ss_pred HHHHHHHHHHHccC-----------------------------------------------cccccccCCCHHhHHHHHH
Q 041863 79 YEKLSSNVMKCAQG-----------------------------------------------VLKISYDGLDDKEKNIFLD 111 (197)
Q Consensus 79 ~~~~~~~i~~~c~g-----------------------------------------------~l~~s~~~L~~~~k~~fl~ 111 (197)
+.+++++|+++|+| +|.+||+.||+++|.||+|
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~ 385 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55678999999999 6789999999999999999
Q ss_pred hhcCCCC--CCHHHHHHHHHHcCCCcccchHHHhhCcCceeecCCc---EEecHHHHHHHHHHHhhh
Q 041863 112 VACFFQG--QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISNNNK---ITMHDLKQEFGQEIIQEE 173 (197)
Q Consensus 112 la~fp~~--~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~~~~---~~mHdlv~~~a~~~~~~e 173 (197)
||+||++ ++.+.++.+|.+++..++.++++|+++||++...+|. |+||+++|+|+++.+.++
T Consensus 386 l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 386 LSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred hCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999988 5889999999888777888999999999999887665 999999999999987766
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=194.73 Aligned_cols=158 Identities=21% Similarity=0.293 Sum_probs=129.8
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEec---CCCChHHHHHHHHhhcCCCCCCCh
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEI---EALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l---~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
|++||||||||+..+++.+ ++|++||||||+..++..+. ...+.+ ++|+.+++++||...++.. ..
T Consensus 236 ~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~ 304 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KA 304 (591)
T ss_dssp TTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GG
T ss_pred CCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cc
Confidence 4689999999998877654 36899999999998877653 234444 5899999999999988642 22
Q ss_pred hHHHHHHHHHHHccC-----------------------------------------------cccccccCCCHHhHHHHH
Q 041863 78 GYEKLSSNVMKCAQG-----------------------------------------------VLKISYDGLDDKEKNIFL 110 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g-----------------------------------------------~l~~s~~~L~~~~k~~fl 110 (197)
...+.+.+|+++|+| ++.+||+.||++.|.||+
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~ 384 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT 384 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334678899999999 346789999999999999
Q ss_pred HhhcCCCC--CCHHHHHHHHHHcCCCcccchHHHhhCcCceeecCC---cEEecHHHHHHHHHH
Q 041863 111 DVACFFQG--QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISNNN---KITMHDLKQEFGQEI 169 (197)
Q Consensus 111 ~la~fp~~--~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~~~---~~~mHdlv~~~a~~~ 169 (197)
++|+||++ ++.+.+..+|..++..++.++++|+++||+....++ .|+||+++|+|+++.
T Consensus 385 ~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 385 DLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99999987 688899999987655567789999999999976543 599999999999987
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=8e-26 Score=204.70 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=121.2
Q ss_pred CEEEEEEeCCCChHHHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEecC------CCChHHHHHHHHhhcCCCCC
Q 041863 1 MKVLIVFDDVTCFTQLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEIE------ALEYHHALDLFSRHAFKRNH 74 (197)
Q Consensus 1 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~------~L~~~~a~~L~~~~a~~~~~ 74 (197)
||+||||||||+.++|+.+. +||+||||||++.++..+.....+.++ +|+.+||++||.+.....
T Consensus 244 KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-- 314 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-- 314 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--
T ss_pred CCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--
Confidence 68999999999999998863 599999999999998654433456666 899999999999884222
Q ss_pred CChhHHHHHHHHHHHccC--------------------------------cccccccCCCHHh-HHHHHHhhcCCCC--C
Q 041863 75 LDVGYEKLSSNVMKCAQG--------------------------------VLKISYDGLDDKE-KNIFLDVACFFQG--Q 119 (197)
Q Consensus 75 ~~~~~~~~~~~i~~~c~g--------------------------------~l~~s~~~L~~~~-k~~fl~la~fp~~--~ 119 (197)
. .++..++ |+| +|.+||+.||++. |+||++||+||++ +
T Consensus 315 -~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 315 -P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp -T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCE
T ss_pred -H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCC
Confidence 1 1122222 666 6789999999999 9999999999987 5
Q ss_pred CHHHHHHHHHHcCC-CcccchHHHhhCcCceeec-CCcEEecHHHHHHH
Q 041863 120 DVNLVMNFLNASGF-YPEIGISFLVDKSLIVISN-NNKITMHDLKQEFG 166 (197)
Q Consensus 120 ~~~~l~~~w~~~g~-~~~~~l~~L~~~sll~~~~-~~~~~mHdlv~~~a 166 (197)
+.+.++.+|+++|. .++.++++|+++||++... .++|+|||++++++
T Consensus 388 ~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 77889999998863 3667899999999999864 56799999998854
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.39 E-value=9.1e-07 Score=71.33 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=98.4
Q ss_pred EEEEEEeCCCChH--------H-HHHhhccCCCCCCCcEEEEEeCChHHHHhc-----------C-CceeEecCCCChHH
Q 041863 2 KVLIVFDDVTCFT--------Q-LESLIGSLDWLTPVSRIIITTRNKQVLRNW-----------E-VRKIYEIEALEYHH 60 (197)
Q Consensus 2 r~LlVLDdv~~~~--------~-~~~l~~~~~~~~~gs~iivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~ 60 (197)
+++|||||++... . +..+..... ..++..+|+|++........ + ....+.+.+|+.++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 6899999997632 2 222221111 12478899999876532211 1 12478999999999
Q ss_pred HHHHHHhhcCCCC-CCChhHHHHHHHHHHHccC------c-------------------------ccccccCC---CHHh
Q 041863 61 ALDLFSRHAFKRN-HLDVGYEKLSSNVMKCAQG------V-------------------------LKISYDGL---DDKE 105 (197)
Q Consensus 61 a~~L~~~~a~~~~-~~~~~~~~~~~~i~~~c~g------~-------------------------l~~s~~~L---~~~~ 105 (197)
+.+++........ ... .+.+..|...||| . +.-.+..+ ++..
T Consensus 208 ~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 284 (350)
T 2qen_A 208 SVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRY 284 (350)
T ss_dssp HHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhH
Confidence 9999986431111 112 2456778888888 0 11112333 5677
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHc--CCC---cccchHHHhhCcCceeecCCcEEe-cHHHHHHHH
Q 041863 106 KNIFLDVACFFQGQDVNLVMNFLNAS--GFY---PEIGISFLVDKSLIVISNNNKITM-HDLKQEFGQ 167 (197)
Q Consensus 106 k~~fl~la~fp~~~~~~~l~~~w~~~--g~~---~~~~l~~L~~~sll~~~~~~~~~m-Hdlv~~~a~ 167 (197)
+..+..+|. ...+...+....... +.. ...+++.|.+.+||... .+.|++ |++++++.+
T Consensus 285 ~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 285 VDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 778888887 235656666554332 222 24679999999999876 577876 678887753
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.29 E-value=3e-07 Score=74.29 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=95.1
Q ss_pred EEEEEEeCCCChH-----HHHHhhccCCCCCCCcEEEEEeCChHHHHh----------c-CC-ceeEecCCCChHHHHHH
Q 041863 2 KVLIVFDDVTCFT-----QLESLIGSLDWLTPVSRIIITTRNKQVLRN----------W-EV-RKIYEIEALEYHHALDL 64 (197)
Q Consensus 2 r~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~~a~~L 64 (197)
+++|||||++... ++..++..+....++..+|+|++....... . +. ...+.+.+|+.+++.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 6799999996532 221222111111246789999998654221 1 11 25789999999999999
Q ss_pred HHhhcCC-CCCCChhHHHHHHHHHHHccC----------c---------------------cccccc-------CCCHHh
Q 041863 65 FSRHAFK-RNHLDVGYEKLSSNVMKCAQG----------V---------------------LKISYD-------GLDDKE 105 (197)
Q Consensus 65 ~~~~a~~-~~~~~~~~~~~~~~i~~~c~g----------~---------------------l~~s~~-------~L~~~~ 105 (197)
+...... +.... .. ..|...||| . +.-.+. .|++..
T Consensus 218 l~~~~~~~~~~~~-~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 292 (357)
T 2fna_A 218 LRRGFQEADIDFK-DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRY 292 (357)
T ss_dssp HHHHHHHHTCCCC-CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHcCCCCC-cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence 9864311 11111 11 567777777 0 100112 567888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHH-HcC--CC---cccchHHHhhCcCceeecCCcEEe-cHHHHHHH
Q 041863 106 KNIFLDVACFFQGQDVNLVMNFLN-ASG--FY---PEIGISFLVDKSLIVISNNNKITM-HDLKQEFG 166 (197)
Q Consensus 106 k~~fl~la~fp~~~~~~~l~~~w~-~~g--~~---~~~~l~~L~~~sll~~~~~~~~~m-Hdlv~~~a 166 (197)
+..+..+|+ . . +...+..... ..| .. ...+++.|++.+||... .+.|++ |++++++.
T Consensus 293 ~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 293 LNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 888888888 2 2 5566554332 223 22 24679999999999876 477885 78888764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.11 E-value=8.3e-06 Score=67.31 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=93.0
Q ss_pred CEEEEEEeCCCCh--------HHHHHhhccC---CCCC--CCcEEEEEeCChHHHHhc---------CCceeEecCCCCh
Q 041863 1 MKVLIVFDDVTCF--------TQLESLIGSL---DWLT--PVSRIIITTRNKQVLRNW---------EVRKIYEIEALEY 58 (197)
Q Consensus 1 kr~LlVLDdv~~~--------~~~~~l~~~~---~~~~--~gs~iivTTR~~~v~~~~---------~~~~~~~l~~L~~ 58 (197)
++++|||||++.. +.+..+...+ +..+ .+..+|+||+........ .....+.+++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4789999999763 3343333222 1112 345588888766533111 1123389999999
Q ss_pred HHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHcc------C-----------------------------------c-
Q 041863 59 HHALDLFSRHA---FKRNHLDVGYEKLSSNVMKCAQ------G-----------------------------------V- 93 (197)
Q Consensus 59 ~~a~~L~~~~a---~~~~~~~~~~~~~~~~i~~~c~------g-----------------------------------~- 93 (197)
++.+++|.... +...... .+....|...|+ | .
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99999997543 3221122 345667777777 7 0
Q ss_pred ----ccccccCCCHHhHHHHHHhhcCC----CCCCHHHHHHHH-----HHcCCC------cccchHHHhhCcCceeec--
Q 041863 94 ----LKISYDGLDDKEKNIFLDVACFF----QGQDVNLVMNFL-----NASGFY------PEIGISFLVDKSLIVISN-- 152 (197)
Q Consensus 94 ----l~~s~~~L~~~~k~~fl~la~fp----~~~~~~~l~~~w-----~~~g~~------~~~~l~~L~~~sll~~~~-- 152 (197)
+.-++..||+..+.++..++.+. ..++...+...+ ...|.. ...+++.|.+.+||....
T Consensus 295 ~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~ 374 (412)
T 1w5s_A 295 AASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSG 374 (412)
T ss_dssp -----CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-
T ss_pred ccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeeccc
Confidence 22345788999999999888753 124555444333 222321 135689999999998653
Q ss_pred ---CCcEEecHHH
Q 041863 153 ---NNKITMHDLK 162 (197)
Q Consensus 153 ---~~~~~mHdlv 162 (197)
.|+|++|++.
T Consensus 375 ~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 375 RGMRGRTTLFRLA 387 (412)
T ss_dssp ------CCEEEEC
T ss_pred CCCCCceeEEEeC
Confidence 3445555443
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.30 E-value=0.00039 Score=56.70 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=101.8
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCC----CCcEEEEEeCChHHHHhcC-------CceeEecCCCChHHHHHHHHhh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLT----PVSRIIITTRNKQVLRNWE-------VRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~iivTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
+.+||||+++.. ..+..|...+.... .+..||+||++........ ....+.+++++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 568999999764 34555544443211 3677888888765433322 1236899999999999999775
Q ss_pred cCC---CCCCChhHHHHHHHHHHHc---------cC---------------------------------------ccccc
Q 041863 69 AFK---RNHLDVGYEKLSSNVMKCA---------QG---------------------------------------VLKIS 97 (197)
Q Consensus 69 a~~---~~~~~~~~~~~~~~i~~~c---------~g---------------------------------------~l~~s 97 (197)
+.. ..... .+....++..+ +| .+.-.
T Consensus 206 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~ 282 (389)
T 1fnn_A 206 AKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEV 282 (389)
T ss_dssp HHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHH
T ss_pred HHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHH
Confidence 421 22122 24556667777 55 22233
Q ss_pred ccCCCHHhHHHHHHhhcCC---C--CCCHHHHHHHHHH----cCCCc------ccchHHHhhCcCceeecC-------Cc
Q 041863 98 YDGLDDKEKNIFLDVACFF---Q--GQDVNLVMNFLNA----SGFYP------EIGISFLVDKSLIVISNN-------NK 155 (197)
Q Consensus 98 ~~~L~~~~k~~fl~la~fp---~--~~~~~~l~~~w~~----~g~~~------~~~l~~L~~~sll~~~~~-------~~ 155 (197)
+..|+++.+.++..++.+. . .++...+...+.. .|... ..+++.|.+.++|..... |+
T Consensus 283 l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~ 362 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGR 362 (389)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------
T ss_pred HHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCc
Confidence 5678888888877777654 2 2455555444433 22211 246899999999987543 33
Q ss_pred EE-------ecHHHHHHHHHHHhhh
Q 041863 156 IT-------MHDLKQEFGQEIIQEE 173 (197)
Q Consensus 156 ~~-------mHdlv~~~a~~~~~~e 173 (197)
++ .|+++..+...+..+|
T Consensus 363 ~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 363 TTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 22 4567777666666554
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.06 E-value=0.0012 Score=49.53 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=58.3
Q ss_pred EEEEEEeCCCC--hHHHHHhhccCCCCCCCcEEEEEeCChHHHH-h-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTC--FTQLESLIGSLDWLTPVSRIIITTRNKQVLR-N-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~-~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+.+||+||++. ...++.+...+.....+..+|+||+...... . ......+.+++++.++..+++...........
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~- 205 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH- 205 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-
Confidence 47899999965 3456666554443446788898887654211 1 12246889999999999999987653222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....|++.|+|
T Consensus 206 -~~~~~~~l~~~~~G 219 (250)
T 1njg_A 206 -EPRALQLLARAAEG 219 (250)
T ss_dssp -CHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHcCC
Confidence 13456778888887
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0021 Score=52.07 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred EEEEEEeCCCCh------HHHHHhhccCCC-CCCCcEEEEEeCChHHHHhcC-------CceeEecCCCChHHHHHHHHh
Q 041863 2 KVLIVFDDVTCF------TQLESLIGSLDW-LTPVSRIIITTRNKQVLRNWE-------VRKIYEIEALEYHHALDLFSR 67 (197)
Q Consensus 2 r~LlVLDdv~~~------~~~~~l~~~~~~-~~~gs~iivTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~L~~~ 67 (197)
+.+||||+++.. +.+..+...... ...+..+|+||+.......+. ....+.+++++.++..+++..
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~ 208 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHH
Confidence 579999999653 234444332211 123566788887664332221 125799999999999999987
Q ss_pred hc
Q 041863 68 HA 69 (197)
Q Consensus 68 ~a 69 (197)
.+
T Consensus 209 ~~ 210 (386)
T 2qby_A 209 RA 210 (386)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.022 Score=46.17 Aligned_cols=142 Identities=15% Similarity=0.072 Sum_probs=82.1
Q ss_pred EEEEeCCCChH------H-HHHhhccCCCCCCCcEEEEEeCChHHHHhc------CCceeEecCCCChHHHHHHHHhhc-
Q 041863 4 LIVFDDVTCFT------Q-LESLIGSLDWLTPVSRIIITTRNKQVLRNW------EVRKIYEIEALEYHHALDLFSRHA- 69 (197)
Q Consensus 4 LlVLDdv~~~~------~-~~~l~~~~~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~a~~L~~~~a- 69 (197)
+|||||++... . +..+.... .+..+|+||+.......+ .....+.+++++.++..++|...+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 89999997643 2 33343322 578899999875321111 112389999999999999998863
Q ss_pred --CCCCCCChhHHHHHHHHHHHcc---C-------------------------------------cccccccCCCHHhHH
Q 041863 70 --FKRNHLDVGYEKLSSNVMKCAQ---G-------------------------------------VLKISYDGLDDKEKN 107 (197)
Q Consensus 70 --~~~~~~~~~~~~~~~~i~~~c~---g-------------------------------------~l~~s~~~L~~~~k~ 107 (197)
+.....++ +....+++.|+ | .+..++..|++..+.
T Consensus 212 ~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (384)
T 2qby_B 212 YGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKL 288 (384)
T ss_dssp HTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred hhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHH
Confidence 32222222 33445555555 5 233345778887777
Q ss_pred HHHHhhcCCC-CCCHHHHHHHHHHcCCCc------ccchHHHhhCcCceeec
Q 041863 108 IFLDVACFFQ-GQDVNLVMNFLNASGFYP------EIGISFLVDKSLIVISN 152 (197)
Q Consensus 108 ~fl~la~fp~-~~~~~~l~~~w~~~g~~~------~~~l~~L~~~sll~~~~ 152 (197)
.+..++.... +-.......+....|... ..+++.|.+.+++....
T Consensus 289 ~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 289 ALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 7777766111 100112223333333211 34688999999998643
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0093 Score=48.23 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=80.1
Q ss_pred CEEEEEEeCCCChHH-------HHHhhccCCCC--CCCcEEEEEeCChHH--------HHhcCCceeEecCCCChHHHHH
Q 041863 1 MKVLIVFDDVTCFTQ-------LESLIGSLDWL--TPVSRIIITTRNKQV--------LRNWEVRKIYEIEALEYHHALD 63 (197)
Q Consensus 1 kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gs~iivTTR~~~v--------~~~~~~~~~~~l~~L~~~~a~~ 63 (197)
++.+||||+++.... +..+....... ..+..+|.||+.... ...++ ...+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHH
Confidence 367999999986431 22333222111 345678888876522 12111 2478999999999999
Q ss_pred HHHhhc---CCCCCCChhHHHHHHHHHHHcc---C---------------------------------------cccccc
Q 041863 64 LFSRHA---FKRNHLDVGYEKLSSNVMKCAQ---G---------------------------------------VLKISY 98 (197)
Q Consensus 64 L~~~~a---~~~~~~~~~~~~~~~~i~~~c~---g---------------------------------------~l~~s~ 98 (197)
++...+ +......+ +....+++.++ | .+.-++
T Consensus 209 il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~ 285 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVV 285 (387)
T ss_dssp HHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHH
Confidence 998763 22222121 23344555555 5 223345
Q ss_pred cCCCHHhHHHHHHhhcCCCC---CCHHHHHHH----HHHcCCC------cccchHHHhhCcCceee
Q 041863 99 DGLDDKEKNIFLDVACFFQG---QDVNLVMNF----LNASGFY------PEIGISFLVDKSLIVIS 151 (197)
Q Consensus 99 ~~L~~~~k~~fl~la~fp~~---~~~~~l~~~----w~~~g~~------~~~~l~~L~~~sll~~~ 151 (197)
..|++..+..+..++....+ +....+.+. ....|.. ...+++.|...+++...
T Consensus 286 ~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 286 RTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 67888777777766633223 333433332 2222321 13467888888888864
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.009 Score=44.09 Aligned_cols=89 Identities=9% Similarity=0.090 Sum_probs=54.6
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHHH-Hh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+.+||+||++.. ...+.+...+....+++++|+||+..... .. ......+.+.+++.++..+++...+.......
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 181 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI- 181 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 568999999764 33444443333234577889988765321 11 12234789999999999999987653211111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....++..++|
T Consensus 182 -~~~~~~~l~~~~~g 195 (226)
T 2chg_A 182 -TEDGLEALIYISGG 195 (226)
T ss_dssp -CHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHcCC
Confidence 12455667777777
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.028 Score=44.26 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=56.1
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHHH-Hh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQVL-RN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+.+||+||++.. ...+.|...+....+++.+|+||....-. .. ......+.+.+++.++..+++...+.......
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 186 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY- 186 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 578999999763 34444444333233577888888764321 11 12335899999999999999987553211111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....++..|+|
T Consensus 187 -~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 187 -TNDGLEAIIFTAEG 200 (323)
T ss_dssp -CHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHcCC
Confidence 12456778888888
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.68 E-value=0.12 Score=40.76 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=36.7
Q ss_pred CcEEEEEeCChHHH-Hhc--CCceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 29 VSRIIITTRNKQVL-RNW--EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 29 gs~iivTTR~~~v~-~~~--~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
+..+|.||...... ..+ .....+.+.+++.++..+++...+....... ..+....++..++|
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G 202 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRG 202 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCS
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccC
Confidence 35566666543211 111 1135789999999999999887653322111 12456677777877
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.73 E-value=0.58 Score=36.44 Aligned_cols=89 Identities=9% Similarity=0.090 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-+||+|+++.. ...+.|...+....+++.+|+||....- ... ......+.+.+++.++..+++...+.......
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i- 181 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI- 181 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB-
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 468999999754 3456666665544567788888866531 111 12235889999999999998887653222111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....++..++|
T Consensus 182 -~~~~l~~l~~~~~G 195 (319)
T 2chq_A 182 -TEDGLEALIYISGG 195 (319)
T ss_dssp -CHHHHHHHHHTTTT
T ss_pred -CHHHHHHHHHHcCC
Confidence 13455677777887
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.096 Score=41.17 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHHH-Hhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQVL-RNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+.+||+|+++.. ...+.|...+....+++++|+||...... ... .....+.+.+++.++..+++...+......
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-- 188 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 188 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE--
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC--
Confidence 468999999754 34454544333234577888888765321 111 123478999999999999988765322211
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
-..+....|+..++|
T Consensus 189 ~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 189 LTEEGLQAILYIAEG 203 (327)
T ss_dssp ECHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCC
Confidence 113456778888888
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.63 E-value=0.44 Score=38.17 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHh-cCCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRN-WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+.+||+||++.. ...+.|...+.....+..+|++|....- ... ......+.+.+++.++..+++...........
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~- 198 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH- 198 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 458899999753 3455554443333346677777764431 111 12346889999999999999886542111111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
..+....|+..++|
T Consensus 199 -~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 199 -EPRALQLLARAAEG 212 (373)
T ss_dssp -CHHHHHHHHHHSSS
T ss_pred -CHHHHHHHHHHCCC
Confidence 12456778888888
No 19
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.31 E-value=1.4 Score=35.03 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCCh
Q 041863 2 KVLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDV 77 (197)
Q Consensus 2 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~ 77 (197)
+-++|+|+++.. ...+.|+..+....+++.+|++|.+.. +...+ +....+.+.+++.++..+.+.... ...
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~- 183 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS- 183 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC-
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC-
Confidence 457899999864 334555544443345677777776653 22221 234688999999999999988765 111
Q ss_pred hHHHHHHHHHHHccC
Q 041863 78 GYEKLSSNVMKCAQG 92 (197)
Q Consensus 78 ~~~~~~~~i~~~c~g 92 (197)
.+....++..++|
T Consensus 184 --~~~~~~l~~~s~G 196 (334)
T 1a5t_A 184 --QDALLAALRLSAG 196 (334)
T ss_dssp --HHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHcCC
Confidence 2445678888999
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.41 E-value=1.4 Score=34.89 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=34.3
Q ss_pred cEEEEEeCChHHH-Hh-c-CCceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 30 SRIIITTRNKQVL-RN-W-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 30 s~iivTTR~~~v~-~~-~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
..+|.+|...... .. . .....+.+.+++.++..+++...+...... -..+....++..++|
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRS 218 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTT
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCc
Confidence 4566666543221 11 0 123688999999999999888765322111 112345556666666
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.27 E-value=0.3 Score=36.31 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=46.7
Q ss_pred EEEEEeCCCChH--H--HHHhhccCCCC-CCCc-EEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHh
Q 041863 3 VLIVFDDVTCFT--Q--LESLIGSLDWL-TPVS-RIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSR 67 (197)
Q Consensus 3 ~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~ 67 (197)
.+||+||++... . .+.+...+... ..+. ++|+||+... +...+.....+.+.+++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 478999996431 1 22222211100 1232 4777776332 111111126789999999999999887
Q ss_pred hcCCCC-CCChhHHHHHHHHHHHccC
Q 041863 68 HAFKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 68 ~a~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
.+.... ..+ .+....++..++|
T Consensus 186 ~~~~~~~~~~---~~~~~~l~~~~~g 208 (242)
T 3bos_A 186 RAAMRGLQLP---EDVGRFLLNRMAR 208 (242)
T ss_dssp HHHHTTCCCC---HHHHHHHHHHTTT
T ss_pred HHHHcCCCCC---HHHHHHHHHHccC
Confidence 653211 111 2445667777766
No 22
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.78 E-value=1.7 Score=34.43 Aligned_cols=88 Identities=8% Similarity=0.111 Sum_probs=52.3
Q ss_pred EEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|||++...+ ..+.+...+....+++.+|++|.+.. +...+ .....+.+.+++.++..+.+...+...... -
T Consensus 136 ~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 213 (354)
T 1sxj_E 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--L 213 (354)
T ss_dssp EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--E
T ss_pred eEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--C
Confidence 389999998642 23333332221224677888876542 21111 223688999999999999988765321111 0
Q ss_pred H-HHHHHHHHHHccC
Q 041863 79 Y-EKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~-~~~~~~i~~~c~g 92 (197)
. .+....|+..++|
T Consensus 214 ~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 214 ETKDILKRIAQASNG 228 (354)
T ss_dssp CCSHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHcCC
Confidence 1 2456778888888
No 23
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.76 E-value=6.7 Score=29.80 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=45.5
Q ss_pred EEEEEEeCCCCh------------HHHHHhhccCCC---CCCCcEEEEEeCChHHHHhc---C-CceeEecCCCCh-HHH
Q 041863 2 KVLIVFDDVTCF------------TQLESLIGSLDW---LTPVSRIIITTRNKQVLRNW---E-VRKIYEIEALEY-HHA 61 (197)
Q Consensus 2 r~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gs~iivTTR~~~v~~~~---~-~~~~~~l~~L~~-~~a 61 (197)
..+|+||+++.. ..++.|...+.. .+.+..||.||......... + -...+.+++++. ++-
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHH
Confidence 568999998642 123333332221 22344577788777554431 1 145678888888 555
Q ss_pred HHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 62 LDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 62 ~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
.+++.... . .. ......++..+.|
T Consensus 205 ~~i~~~~~---~-~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 205 LEALELLG---N-FK---DKERTTIAQQVKG 228 (272)
T ss_dssp HHHHHHHT---C-SC---HHHHHHHHHHHTT
T ss_pred HHHHHhcC---C-CC---HHHHHHHHHHhcC
Confidence 66655421 1 11 2335566666655
No 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.80 E-value=1.8 Score=35.94 Aligned_cols=87 Identities=11% Similarity=0.192 Sum_probs=49.3
Q ss_pred EEEEEeCCCChH----HHHHhhccCCC-CCCCcEEEEEeCCh---------HHHHhcCCceeEecCCCChHHHHHHHHhh
Q 041863 3 VLIVFDDVTCFT----QLESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWEVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 3 ~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
-+|+|||+.... .-+.+...+.. ...|..||+||.+. .+...+....++.+++++.++-.+++...
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 479999996432 22223222110 12467889988763 12222222357889999999999998876
Q ss_pred cCCCC-CCChhHHHHHHHHHHHccC
Q 041863 69 AFKRN-HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 69 a~~~~-~~~~~~~~~~~~i~~~c~g 92 (197)
+.... ..+ .++...|+..++|
T Consensus 276 ~~~~~~~i~---~e~l~~la~~~~g 297 (440)
T 2z4s_A 276 LEIEHGELP---EEVLNFVAENVDD 297 (440)
T ss_dssp HHHHTCCCC---TTHHHHHHHHCCS
T ss_pred HHHcCCCCC---HHHHHHHHHhcCC
Confidence 53111 111 1335566777776
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.51 E-value=3.2 Score=31.75 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCcEEEEEeCChHHHH-----hcCCceeEecCCCChHHHHHHHHhhcCC
Q 041863 28 PVSRIIITTRNKQVLR-----NWEVRKIYEIEALEYHHALDLFSRHAFK 71 (197)
Q Consensus 28 ~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~L~~~~a~~ 71 (197)
.+..||.||....... .......+.+++++.++-.+++......
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 4567788887543221 1112347889999999999999877643
No 26
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=77.57 E-value=6.6 Score=31.02 Aligned_cols=89 Identities=10% Similarity=-0.015 Sum_probs=53.8
Q ss_pred EEEEEEeCCCC---hHHHHHhhccCCCCCCCcEEEEEeCC-------hHHHHhc-CCceeEecCCCChHHHHHHHHhhcC
Q 041863 2 KVLIVFDDVTC---FTQLESLIGSLDWLTPVSRIIITTRN-------KQVLRNW-EVRKIYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 2 r~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~iivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~ 70 (197)
+-++|+|++.. ...++.|...+....+++.+|++|.. ..+.+.+ .....+...+++.++-.+.+...+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 34788999865 24555565544433457777776643 2344443 3346888999999888877766542
Q ss_pred CCCCCChhHHHHHHHHHHHccC
Q 041863 71 KRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~g 92 (197)
..... -..+.+..++..+||
T Consensus 157 ~~g~~--i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 157 QLNLE--LDDAANQVLCYCYEG 176 (343)
T ss_dssp HTTCE--ECHHHHHHHHHSSTT
T ss_pred HcCCC--CCHHHHHHHHHHhch
Confidence 21111 113556778888887
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=75.94 E-value=3.5 Score=31.88 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=41.2
Q ss_pred EEEEeCCC-----------ChHHHHHhhccCCCCCCCcEEEEEeCChHH----------HHhcCCceeEecCCCChHHHH
Q 041863 4 LIVFDDVT-----------CFTQLESLIGSLDWLTPVSRIIITTRNKQV----------LRNWEVRKIYEIEALEYHHAL 62 (197)
Q Consensus 4 LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs~iivTTR~~~v----------~~~~~~~~~~~l~~L~~~~a~ 62 (197)
+|+||+++ .......|...+.....+..||.||..... ... ....+.+++++.++-.
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELF 210 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHH
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHH
Confidence 78999997 333344554444333456678888864322 111 2367889999999988
Q ss_pred HHHHhhc
Q 041863 63 DLFSRHA 69 (197)
Q Consensus 63 ~L~~~~a 69 (197)
+++....
T Consensus 211 ~il~~~l 217 (309)
T 3syl_A 211 EIAGHML 217 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887655
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.79 E-value=3.6 Score=34.89 Aligned_cols=86 Identities=12% Similarity=0.162 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCh-----HHHHHhhccCCCCCCCcEEEEEeCChH---HHHhcCCceeEecCCCChHHHHHHHHhhcCCCC
Q 041863 2 KVLIVFDDVTCF-----TQLESLIGSLDWLTPVSRIIITTRNKQ---VLRNWEVRKIYEIEALEYHHALDLFSRHAFKRN 73 (197)
Q Consensus 2 r~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~~---v~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~ 73 (197)
+.+|++|+++.. ..+..+...+. . .+..||+++.+.. +.........+.+.+++.++..+++...+....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 468999999643 11233322211 1 2334555554432 112122345789999999999988876553211
Q ss_pred -CCChhHHHHHHHHHHHccC
Q 041863 74 -HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 74 -~~~~~~~~~~~~i~~~c~g 92 (197)
... .+....|++.++|
T Consensus 227 ~~i~---~~~l~~la~~s~G 243 (516)
T 1sxj_A 227 FKLD---PNVIDRLIQTTRG 243 (516)
T ss_dssp CCCC---TTHHHHHHHHTTT
T ss_pred CCCC---HHHHHHHHHHcCC
Confidence 111 1345677888888
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.93 E-value=2.8 Score=32.80 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=35.4
Q ss_pred EEEEEEeCCCChH---HHHHhhccCCCCCCCcEEEEEeCChHHHHh-c-CCceeEecCCCChHHHH
Q 041863 2 KVLIVFDDVTCFT---QLESLIGSLDWLTPVSRIIITTRNKQVLRN-W-EVRKIYEIEALEYHHAL 62 (197)
Q Consensus 2 r~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~-~-~~~~~~~l~~L~~~~a~ 62 (197)
+-+|++|+++... ..+.|...+....++.++|+||....-... . .....+.+.+++.++-.
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKI 171 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHH
Confidence 5689999998754 334443322212246678888866431100 0 11247889999988743
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.09 E-value=10 Score=28.24 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCh-----------------HHHHHhhccCCC--CCCCcEEEEEeCChHHHHh-c----CCceeEecCCCC
Q 041863 2 KVLIVFDDVTCF-----------------TQLESLIGSLDW--LTPVSRIIITTRNKQVLRN-W----EVRKIYEIEALE 57 (197)
Q Consensus 2 r~LlVLDdv~~~-----------------~~~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-~----~~~~~~~l~~L~ 57 (197)
..+|+||+++.. ..+..++..+.. ...+..||.||........ . .....+.++.++
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 358999999754 112333322211 1235567777765442211 1 123567788889
Q ss_pred hHHHHHHHHhhc
Q 041863 58 YHHALDLFSRHA 69 (197)
Q Consensus 58 ~~~a~~L~~~~a 69 (197)
.++-.+++....
T Consensus 179 ~~~r~~il~~~~ 190 (262)
T 2qz4_A 179 LQERREIFEQHL 190 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887654
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.14 E-value=5.2 Score=31.44 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=51.3
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChHH-HHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQV-LRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-+|++|++... .....|...+.......++|++|....- .... .....+.+.+++.++..+.+...+.......
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i-- 212 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC-- 212 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC--
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC--
Confidence 48899998754 2333343332222345677777754431 1111 1124788999999999998887653222111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
..+....|+..++|
T Consensus 213 ~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 213 DDGVLERILDISAG 226 (353)
T ss_dssp CHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHcCC
Confidence 13456778888888
No 32
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=69.94 E-value=16 Score=28.41 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=45.7
Q ss_pred EEEEEeCCCChH---H-HHHhhccCCC-CCCCcEEEEEeCChH---------HHHhcCCceeEecCCCChHHHHHHHHhh
Q 041863 3 VLIVFDDVTCFT---Q-LESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWEVRKIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 3 ~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L~~~~ 68 (197)
-+|++||+.... . .+.+...+.. ...|..||+||.+.. +...+....++.+++ +.++-.+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 478999996532 1 1222211110 113567888886431 122222235789999 999999988876
Q ss_pred cCCCC-CCChhHHHHHHHHHHHc
Q 041863 69 AFKRN-HLDVGYEKLSSNVMKCA 90 (197)
Q Consensus 69 a~~~~-~~~~~~~~~~~~i~~~c 90 (197)
+.... ..+ .+....|+..+
T Consensus 179 ~~~~~~~l~---~~~l~~l~~~~ 198 (324)
T 1l8q_A 179 LKEFNLELR---KEVIDYLLENT 198 (324)
T ss_dssp HHHTTCCCC---HHHHHHHHHHC
T ss_pred HHhcCCCCC---HHHHHHHHHhC
Confidence 53211 112 23455666666
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.54 E-value=22 Score=27.73 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=39.1
Q ss_pred EEEEEeCCCChH-------------HHHHhhcc---CCCCCCCcEEEEEeCChHHHHh---cCCceeEecCCCChHHHHH
Q 041863 3 VLIVFDDVTCFT-------------QLESLIGS---LDWLTPVSRIIITTRNKQVLRN---WEVRKIYEIEALEYHHALD 63 (197)
Q Consensus 3 ~LlVLDdv~~~~-------------~~~~l~~~---~~~~~~gs~iivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~~ 63 (197)
.+|+||+++... ....++.. +.....+..||.||........ -.....+.++..+.++-.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHH
Confidence 588999997431 12223222 1112345666667765432110 0123567788888888888
Q ss_pred HHHhhcCC
Q 041863 64 LFSRHAFK 71 (197)
Q Consensus 64 L~~~~a~~ 71 (197)
+|..+...
T Consensus 192 il~~~~~~ 199 (322)
T 3eie_A 192 MFEINVGD 199 (322)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 88877643
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.50 E-value=36 Score=27.02 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=46.3
Q ss_pred EEEEEEeCCCChH-------------HHHHhhcc---CCCCCCCcEEEEEeCChH-----HHHhcCCceeEecCCCChHH
Q 041863 2 KVLIVFDDVTCFT-------------QLESLIGS---LDWLTPVSRIIITTRNKQ-----VLRNWEVRKIYEIEALEYHH 60 (197)
Q Consensus 2 r~LlVLDdv~~~~-------------~~~~l~~~---~~~~~~gs~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~ 60 (197)
..+|+||+++... ....++.. +.....+..||.||.... +.. .....+.++..+.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 3689999997431 12223221 111224556666776442 222 234567788888888
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 61 ALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 61 a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
-.++|..+......... ......|+..+.|
T Consensus 222 r~~il~~~l~~~~~~~~--~~~l~~la~~t~G 251 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT--KEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHHHTTSCBCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCCCCCC--HHHHHHHHHHcCC
Confidence 88888876543321111 2234556666655
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.93 E-value=9.6 Score=31.73 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=47.8
Q ss_pred EEEEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCChHH---HHhcCCceeEecCCCChHHHHHHHHhhcCCCC---
Q 041863 2 KVLIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRNKQV---LRNWEVRKIYEIEALEYHHALDLFSRHAFKRN--- 73 (197)
Q Consensus 2 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~--- 73 (197)
+.+|++|++.... +.+.|++.+.. +.-.-|..||.+... ........++.+.+++.++-.+++........
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~ 185 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4689999998653 44555554432 222223335555421 11112345788999999999988877543210
Q ss_pred --CCChhHHHHHHHHHHHccC
Q 041863 74 --HLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 74 --~~~~~~~~~~~~i~~~c~g 92 (197)
....-..+....++..++|
T Consensus 186 ~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 186 GGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp TTSSEECCHHHHHHHHHHHCS
T ss_pred ccccCcCCHHHHHHHHHHCCC
Confidence 0011123455667777777
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.52 E-value=37 Score=27.98 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=48.2
Q ss_pred EEEEEEeCCCCh-------------HHHHHhhccCCC---CCCCcEEEEEeCChHHHHh---cCCceeEecCCCChHHHH
Q 041863 2 KVLIVFDDVTCF-------------TQLESLIGSLDW---LTPVSRIIITTRNKQVLRN---WEVRKIYEIEALEYHHAL 62 (197)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~~---~~~gs~iivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 62 (197)
..+|+||+++.. .....++..+.. ...+..||.||........ -.....+.++..+.++-.
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 358899999854 123444444332 1245667767755432111 022356778888888888
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 63 DLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 63 ~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
.+|..+........ .......|+..+.|
T Consensus 308 ~il~~~l~~~~~~l--~~~~l~~la~~t~G 335 (444)
T 2zan_A 308 AMFRLHLGSTQNSL--TEADFQELGRKTDG 335 (444)
T ss_dssp HHHHHHHTTSCEEC--CHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHcCC
Confidence 88877653322111 11334556666655
No 37
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=65.02 E-value=4 Score=32.16 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=44.4
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCCh-HHHHhcCCceeEecCCCChHHHHHHHHhhc
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNK-QVLRNWEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
-++|+|+++.. ...+.|+..+....+.+.+|++|.+. .+.+.+... .+++.+++.++..+.+.+..
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 47889999754 34555555443334577777777554 333333334 89999999999999887765
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=63.98 E-value=6.4 Score=27.40 Aligned_cols=62 Identities=8% Similarity=0.054 Sum_probs=33.1
Q ss_pred EEEEEEeCCCChH---------H-HHHhhccCCCCCCCcEEEEEeCChHHHHhc-------CCceeEecCCCChHHHHHH
Q 041863 2 KVLIVFDDVTCFT---------Q-LESLIGSLDWLTPVSRIIITTRNKQVLRNW-------EVRKIYEIEALEYHHALDL 64 (197)
Q Consensus 2 r~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~iivTTR~~~v~~~~-------~~~~~~~l~~L~~~~a~~L 64 (197)
+.+|||||++... . .+.+...+. ..+..+|.||......... ..-..+.+.+++.++..++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 3589999997542 1 222222111 1245577777665432111 1223577888888776654
Q ss_pred H
Q 041863 65 F 65 (197)
Q Consensus 65 ~ 65 (197)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 3
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=63.79 E-value=41 Score=26.27 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCh-------------HHHHHhhccCC---CCCCCcEEEEEeCChHHHHh---cCCceeEecCCCChHHHH
Q 041863 2 KVLIVFDDVTCF-------------TQLESLIGSLD---WLTPVSRIIITTRNKQVLRN---WEVRKIYEIEALEYHHAL 62 (197)
Q Consensus 2 r~LlVLDdv~~~-------------~~~~~l~~~~~---~~~~gs~iivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 62 (197)
..+|+||+++.. .....++..+. ....+..||.||........ -.....+.++..+.++-.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 358899999754 01222322211 12245556666654321110 023356778888888888
Q ss_pred HHHHhhcC
Q 041863 63 DLFSRHAF 70 (197)
Q Consensus 63 ~L~~~~a~ 70 (197)
++|..+..
T Consensus 186 ~il~~~l~ 193 (322)
T 1xwi_A 186 AMFKLHLG 193 (322)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877653
No 40
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=56.41 E-value=4.5 Score=29.89 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEeCCCC--------hHHHHHhhccCCCCCCCcEEEEEeCChH
Q 041863 4 LIVFDDVTC--------FTQLESLIGSLDWLTPVSRIIITTRNKQ 40 (197)
Q Consensus 4 LlVLDdv~~--------~~~~~~l~~~~~~~~~gs~iivTTR~~~ 40 (197)
|||||++-. .+.+-.++..-+ .+.-||+|+|+..
T Consensus 123 lvILDEi~~al~~g~l~~~ev~~~l~~Rp---~~~~vIlTGr~ap 164 (196)
T 1g5t_A 123 MVVLDELTYMVAYDYLPLEEVISALNARP---GHQTVIITGRGCH 164 (196)
T ss_dssp EEEEETHHHHHHTTSSCHHHHHHHHHTSC---TTCEEEEECSSCC
T ss_pred EEEEeCCCccccCCCCCHHHHHHHHHhCc---CCCEEEEECCCCc
Confidence 799999932 233333333222 4567999999863
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=56.27 E-value=57 Score=26.08 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=32.3
Q ss_pred CcEEEEEeCChHHHHh---cCCceeEecCCCChHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHccC
Q 041863 29 VSRIIITTRNKQVLRN---WEVRKIYEIEALEYHHALDLFSRHAFKRNHLDVGYEKLSSNVMKCAQG 92 (197)
Q Consensus 29 gs~iivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 92 (197)
+..||.||........ -.....+.+...+.++-.+++...+....... .......|+..+.|
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g 316 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDG 316 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTT
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCC
Confidence 4456666654321110 02234677888888888888876653322111 11234555555554
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.66 E-value=26 Score=27.49 Aligned_cols=88 Identities=9% Similarity=0.125 Sum_probs=48.9
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCChH-HHHhc-CCceeEecCCCChHHHHHHHHhhcCCCCCCChh
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-EVRKIYEIEALEYHHALDLFSRHAFKRNHLDVG 78 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~L~~~~a~~~~~~~~~ 78 (197)
-++|+|+++.. ...+.|...+......+.+|++|.... +...+ .....+.+.+++.++..+.+...+-.....-
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i-- 189 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL-- 189 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB--
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC--
Confidence 47889999643 233333322221224567777775432 11111 1234788999999998887776542111111
Q ss_pred HHHHHHHHHHHccC
Q 041863 79 YEKLSSNVMKCAQG 92 (197)
Q Consensus 79 ~~~~~~~i~~~c~g 92 (197)
.......++..++|
T Consensus 190 ~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 190 SPNAEKALIELSNG 203 (340)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCC
Confidence 12456778888888
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.97 E-value=22 Score=28.00 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=46.5
Q ss_pred EEEEEeCCCCh--HHHHHhhccCCCCCCCcEEEEEeCC-----------------hHHHHhcCCceeEecCCCChHHHHH
Q 041863 3 VLIVFDDVTCF--TQLESLIGSLDWLTPVSRIIITTRN-----------------KQVLRNWEVRKIYEIEALEYHHALD 63 (197)
Q Consensus 3 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~~a~~ 63 (197)
.+|+||++... .....|...+...... .++++|.. +.+.. .-..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHH
Confidence 38999999865 3445555444332222 34444431 12222 22457899999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHcc
Q 041863 64 LFSRHAFKRNHLDVGYEKLSSNVMKCAQ 91 (197)
Q Consensus 64 L~~~~a~~~~~~~~~~~~~~~~i~~~c~ 91 (197)
++...+....... -.+....|+..+.
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGL 292 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhc
Confidence 9987653221111 1244566666665
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.65 E-value=35 Score=27.08 Aligned_cols=41 Identities=12% Similarity=-0.031 Sum_probs=23.5
Q ss_pred CcEEEEEeCChHHHH-h--cCCceeEecCCCChHHHHHHHHhhc
Q 041863 29 VSRIIITTRNKQVLR-N--WEVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 29 gs~iivTTR~~~v~~-~--~~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
+..||.||....... . -.....+.+...+.++-.+++...+
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 455666775432111 0 0223467788888888888776654
No 45
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=50.29 E-value=23 Score=28.54 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=24.8
Q ss_pred EEEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHh
Q 041863 3 VLIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (197)
Q Consensus 3 ~LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~ 44 (197)
-+||||++... . .+..++..+. .|..||++|.+..++..
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~---~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLA---DTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSCHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHhh
Confidence 37899999744 2 2233333222 47789999988888754
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=33.40 E-value=11 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEeCCCC--hHHH-----HHhhccCCCCCCCcEEEEEeCC
Q 041863 3 VLIVFDDVTC--FTQL-----ESLIGSLDWLTPVSRIIITTRN 38 (197)
Q Consensus 3 ~LlVLDdv~~--~~~~-----~~l~~~~~~~~~gs~iivTTR~ 38 (197)
-+|||||++. .+.| ..++... ...|..+|+||..
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~--~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYR--YNNLKSTIITTNY 142 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHH--HHTTCEEEEECCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHH--HHcCCCEEEEcCC
Confidence 3799999973 2222 2222211 1146778888864
No 47
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=30.77 E-value=89 Score=23.81 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeecCCcEEecHHHHHHHHHHH
Q 041863 116 FQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISNNNKITMHDLKQEFGQEII 170 (197)
Q Consensus 116 p~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~~~~~~mHdlv~~~a~~~~ 170 (197)
+.+.....+.+...-..-.+...+..|.+.+++...++++|++-.-+..++....
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~lg~~~~ 97 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRWANGFL 97 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHHHHHHH
Confidence 3445667777666555555677899999999999887788999877777665543
No 48
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=29.80 E-value=36 Score=19.75 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=37.0
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccchHHHhhCcCceeecCCcEEecH
Q 041863 105 EKNIFLDVACFFQGQDVNLVMNFLNASGFYPEIGISFLVDKSLIVISNNNKITMHD 160 (197)
Q Consensus 105 ~k~~fl~la~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~~~~~~mHd 160 (197)
.-..+..++.++.|++...+...+.-.--.+...++.|...+-+... ..+|+|-+
T Consensus 5 ~eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR-sSRYrlkp 59 (68)
T 3i71_A 5 ADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR-SSRYRLKP 59 (68)
T ss_dssp CHHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CCEEEECC
T ss_pred HHHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh-ccccccCc
Confidence 33567788999999988877765422111245668888888877655 56677754
No 49
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=29.18 E-value=46 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=17.5
Q ss_pred EEEEeCCCChH-----HHHHhhccCCCCCCCc-EEEEEeCC
Q 041863 4 LIVFDDVTCFT-----QLESLIGSLDWLTPVS-RIIITTRN 38 (197)
Q Consensus 4 LlVLDdv~~~~-----~~~~l~~~~~~~~~gs-~iivTTR~ 38 (197)
+|||||+.... .+-.+..... ..|. .||+||+.
T Consensus 86 lLilDE~~~~~~~~~~~l~~li~~~~--~~g~~~iiits~~ 124 (149)
T 2kjq_A 86 YLAVDQVEKLGNEEQALLFSIFNRFR--NSGKGFLLLGSEY 124 (149)
T ss_dssp EEEEESTTCCCSHHHHHHHHHHHHHH--HHTCCEEEEEESS
T ss_pred EEEEeCccccChHHHHHHHHHHHHHH--HcCCcEEEEECCC
Confidence 78999996532 1222222111 1234 48888874
No 50
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=27.29 E-value=45 Score=20.72 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=26.9
Q ss_pred CCCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccc
Q 041863 100 GLDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIG 138 (197)
Q Consensus 100 ~L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~ 138 (197)
.|++....++.+|..-|.. ++.+.+. .+|..+....+..
T Consensus 22 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~ 62 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNV 62 (96)
T ss_dssp ECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHH
T ss_pred EcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcch
Confidence 3678888889999888876 5887776 5786443333333
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=26.68 E-value=1.9e+02 Score=21.97 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=26.7
Q ss_pred CCcEEEEEeCChHHHHh--c---CCceeEecCCCChHHHHHHHHhhc
Q 041863 28 PVSRIIITTRNKQVLRN--W---EVRKIYEIEALEYHHALDLFSRHA 69 (197)
Q Consensus 28 ~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~L~~~~a 69 (197)
.+..||.||........ . .....+.++..+.++-.+++....
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 35677777765532211 1 123578888888888888887655
No 52
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=26.32 E-value=1.7e+02 Score=24.47 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=52.4
Q ss_pred EEEEEEeCCC-ChH----HHHHhhccCCCCCCCcEEEEEeCChHHHHhcCCceeEecCCCChHHHHHHHHhhcCCCC---
Q 041863 2 KVLIVFDDVT-CFT----QLESLIGSLDWLTPVSRIIITTRNKQVLRNWEVRKIYEIEALEYHHALDLFSRHAFKRN--- 73 (197)
Q Consensus 2 r~LlVLDdv~-~~~----~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~a~~L~~~~a~~~~--- 73 (197)
++.+|+||+- +.- -.+.|+. .+..++|.+-.+. .++-+..-+.++...++...+....
T Consensus 249 rVdiVlDNaGfEl~~Dl~Lae~Ll~----~gla~~V~~hvK~----------~PwfVSDvT~~D~~~~l~~L~~~~~~~~ 314 (471)
T 3pt1_A 249 RVDFVLDNSGFELYADLMLAAFLLQ----SGLATKCIFHAKD----------IPYMVSDVMLKDFDILVHDLRDREFFPS 314 (471)
T ss_dssp EEEEECCBSTHHHHHHHHHHHHHHH----HTSCSEEEEEEBS----------SCCTTTBCBHHHHHHHHHHHHCTTTSCC
T ss_pred eEEEEEeCCcchhhHHHHHHHHHHH----cCCCcEEEEEecC----------CCceeecCcHHHHHHHHHHHhccccccc
Confidence 7888999987 331 1233333 2335677766652 2333555567777777665543221
Q ss_pred -CCC----hhHHHHHHHHHHHccC-----------cccccccCCCHHh-----HHHHHHhh
Q 041863 74 -HLD----VGYEKLSSNVMKCAQG-----------VLKISYDGLDDKE-----KNIFLDVA 113 (197)
Q Consensus 74 -~~~----~~~~~~~~~i~~~c~g-----------~l~~s~~~L~~~~-----k~~fl~la 113 (197)
.+. +.+..+++++-+.... ..-.+|..+|+.. ..++..|+
T Consensus 315 ~~~~~~~~~~l~~lg~~~~~~~~~G~~~~~~~~FWT~p~~y~~Mp~~~~~~~~p~L~~~L~ 375 (471)
T 3pt1_A 315 GEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQ 375 (471)
T ss_dssp CSTTSHHHHHHHHHHHHHHHHHHHTSEEEEECGGGGSSCCGGGSSTTCCSSSHHHHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHHHHHCCCEEEeCCCccCCCcchhhCChhhcccCCHHHHHHHh
Confidence 111 1233444444333322 5567888888865 56666653
No 53
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=25.25 E-value=59 Score=20.98 Aligned_cols=39 Identities=15% Similarity=-0.135 Sum_probs=26.9
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
|++....++.+|..-|.. ++.+.+. .+|..+.......+
T Consensus 29 Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l 69 (112)
T 2jzy_A 29 LTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVI 69 (112)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHH
T ss_pred cCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchH
Confidence 678888888888888776 5887776 57865443334433
No 54
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=25.03 E-value=85 Score=21.92 Aligned_cols=49 Identities=8% Similarity=-0.053 Sum_probs=34.4
Q ss_pred HhHHHHHHhhcCCCC-CCHHHHHHHHHHcCCCcccchHHHhhCcCceeec
Q 041863 104 KEKNIFLDVACFFQG-QDVNLVMNFLNASGFYPEIGISFLVDKSLIVISN 152 (197)
Q Consensus 104 ~~k~~fl~la~fp~~-~~~~~l~~~w~~~g~~~~~~l~~L~~~sll~~~~ 152 (197)
..-+.+.|++..+.. .+.+.+........-.....+..|...++|....
T Consensus 13 yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 13 VAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp HHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 344677888887654 5777777665544444566799999999998664
No 55
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=24.86 E-value=71 Score=21.49 Aligned_cols=40 Identities=10% Similarity=-0.156 Sum_probs=27.6
Q ss_pred CCCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 100 GLDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 100 ~L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
.|++....++.+|..-|.. ++.+.|+ .+|..+....+..+
T Consensus 60 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l 101 (133)
T 3q9v_A 60 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVV 101 (133)
T ss_dssp CCCHHHHHHHHHHTTSTTCEEEHHHHHHHHHTTCCCTTCCHH
T ss_pred EcCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCcHHHH
Confidence 3678888888888888877 5777766 67976544444433
No 56
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=23.83 E-value=63 Score=21.08 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=26.9
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
|++....++.+|..-+.. ++.+.|+ .+|..+.......+
T Consensus 37 Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l 77 (120)
T 2z9m_A 37 LTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTV 77 (120)
T ss_dssp CCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHH
T ss_pred CCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCCCcchH
Confidence 678888888888888877 5777776 67965444443333
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=23.81 E-value=1.4e+02 Score=24.88 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=27.1
Q ss_pred CCcEEEEEeCChHHH-Hh----cCCceeEecCCCChHHHHHHHHhhcC
Q 041863 28 PVSRIIITTRNKQVL-RN----WEVRKIYEIEALEYHHALDLFSRHAF 70 (197)
Q Consensus 28 ~gs~iivTTR~~~v~-~~----~~~~~~~~l~~L~~~~a~~L~~~~a~ 70 (197)
.+..||.||...... .. ......+.+...+.++-.++|..+..
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 345666677654321 11 12234688999999999999987764
No 58
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=23.80 E-value=42 Score=21.12 Aligned_cols=39 Identities=5% Similarity=-0.089 Sum_probs=26.8
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
|++....++.++..-|.. ++.+.+. .+|..+....+..+
T Consensus 29 Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l 69 (102)
T 3zq7_A 29 LTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYL 69 (102)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHH
T ss_pred cCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchH
Confidence 677888888888888876 5777766 67865544443333
No 59
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=22.94 E-value=60 Score=15.15 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.6
Q ss_pred CCCCcEEEEEeCCh
Q 041863 26 LTPVSRIIITTRNK 39 (197)
Q Consensus 26 ~~~gs~iivTTR~~ 39 (197)
..-|+.++|||...
T Consensus 7 ~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 7 TELGSTELVTTKTA 20 (26)
T ss_pred cccCceEEEEeccC
Confidence 44689999999743
No 60
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=22.85 E-value=76 Score=20.31 Aligned_cols=37 Identities=5% Similarity=-0.217 Sum_probs=26.2
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCccc
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEI 137 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~ 137 (197)
|++....++.+|..-|.. ++.+.++ .+|..+......
T Consensus 35 Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~ 73 (110)
T 2pmu_A 35 LSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVN 73 (110)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSC
T ss_pred cCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccc
Confidence 678888888888888776 5887776 578765433333
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.21 E-value=1e+02 Score=27.18 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=35.0
Q ss_pred EEEEeCCCCh--HHHHHhhccCCC-----------CCCCcEEEEEeCC-----hHH----HHhc------CCceeEecCC
Q 041863 4 LIVFDDVTCF--TQLESLIGSLDW-----------LTPVSRIIITTRN-----KQV----LRNW------EVRKIYEIEA 55 (197)
Q Consensus 4 LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gs~iivTTR~-----~~v----~~~~------~~~~~~~l~~ 55 (197)
.|+||++... +....|+..+.. ...+..||+||.. ..+ ...+ ....++.+.+
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~ 661 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHS 661 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC-
T ss_pred EEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCC
Confidence 6899999754 233333322211 1135688888863 111 1111 1235788999
Q ss_pred CChHHHHHHHHhh
Q 041863 56 LEYHHALDLFSRH 68 (197)
Q Consensus 56 L~~~~a~~L~~~~ 68 (197)
++.++-.+++...
T Consensus 662 l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 662 LEKKHLTEIVSLM 674 (758)
T ss_dssp -CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9988888777653
No 62
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=22.00 E-value=62 Score=20.51 Aligned_cols=36 Identities=3% Similarity=0.036 Sum_probs=25.7
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcc
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPE 136 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~ 136 (197)
|++....++.++..-|.. ++.+.+. .+|..+.....
T Consensus 32 Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~ 69 (106)
T 1gxq_A 32 MGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVED 69 (106)
T ss_dssp CCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCT
T ss_pred cCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCc
Confidence 678888888888888877 5887776 57865433333
No 63
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=21.62 E-value=47 Score=22.29 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=19.3
Q ss_pred EEEEeCCCChH--HHHHhhccCCCCCCCcEEEEEeCC
Q 041863 4 LIVFDDVTCFT--QLESLIGSLDWLTPVSRIIITTRN 38 (197)
Q Consensus 4 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~ 38 (197)
.|+||+++... .-..+...+.......++|.||..
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 57899997542 233333332222345677777764
No 64
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=21.38 E-value=1.1e+02 Score=20.19 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.1
Q ss_pred CCHHhHHHHHHhhcCCCC-CCHHHHH-HHHHHcCCCcccch
Q 041863 101 LDDKEKNIFLDVACFFQG-QDVNLVM-NFLNASGFYPEIGI 139 (197)
Q Consensus 101 L~~~~k~~fl~la~fp~~-~~~~~l~-~~w~~~g~~~~~~l 139 (197)
|++..-.++.+|+--|.. ++++.|. .+|..+....+..+
T Consensus 37 Lt~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~~~~~l 77 (120)
T 2zxj_A 37 LTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTV 77 (120)
T ss_dssp CCHHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCSCTHHH
T ss_pred cCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCh
Confidence 778888888888888776 5887776 67976544444333
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.77 E-value=42 Score=19.58 Aligned_cols=23 Identities=4% Similarity=-0.036 Sum_probs=17.7
Q ss_pred ccchHHHhhCcCceeecCCcEEe
Q 041863 136 EIGISFLVDKSLIVISNNNKITM 158 (197)
Q Consensus 136 ~~~l~~L~~~sll~~~~~~~~~m 158 (197)
...+..|.+.++|.....|+|++
T Consensus 43 ~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 43 NQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHCCcEecCCCceEee
Confidence 45689999999987665777764
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.51 E-value=2.2e+02 Score=21.80 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=8.3
Q ss_pred EEEEeCCCCh
Q 041863 4 LIVFDDVTCF 13 (197)
Q Consensus 4 LlVLDdv~~~ 13 (197)
.|+||++...
T Consensus 99 ~L~LDEi~~l 108 (304)
T 1ojl_A 99 TLFLDEIGDI 108 (304)
T ss_dssp EEEEESCTTC
T ss_pred EEEEeccccC
Confidence 6899999864
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.37 E-value=67 Score=24.98 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred EEEEeCCCCh---H---HHHHhhccCCCCCCCcEEEEEeCChHHHHh
Q 041863 4 LIVFDDVTCF---T---QLESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (197)
Q Consensus 4 LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~iivTTR~~~v~~~ 44 (197)
+++||+.... . .+..++..+. .|..||+||-+..+...
T Consensus 244 ~lllDEp~~~LD~~~~~~l~~~l~~~~---~~~~vi~~tH~~~~~~~ 287 (322)
T 1e69_A 244 FYVLDEVDSPLDDYNAERFKRLLKENS---KHTQFIVITHNKIVMEA 287 (322)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHT---TTSEEEEECCCTTGGGG
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHhh
Confidence 7899999643 2 2223333222 35668888877655544
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=20.08 E-value=1.9e+02 Score=21.56 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=16.9
Q ss_pred eeEecCCCChHHHHHHHHhh
Q 041863 49 KIYEIEALEYHHALDLFSRH 68 (197)
Q Consensus 49 ~~~~l~~L~~~~a~~L~~~~ 68 (197)
..+.+++++.++-.+++...
T Consensus 195 ~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 195 IRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCCCCHHHHHHHHHSS
T ss_pred ceEEcCCcCHHHHHHHHHhh
Confidence 56899999999988888854
Done!