Query 041864
Match_columns 300
No_of_seqs 128 out of 335
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 6.4E-29 2.2E-33 206.3 15.8 109 105-216 8-121 (130)
2 4i1k_A B3 domain-containing tr 99.6 2.2E-15 7.6E-20 127.7 12.1 101 101-213 41-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 5.1E-13 1.8E-17 105.9 10.8 90 108-209 8-98 (104)
4 1na6_A Ecorii, restriction end 94.1 0.052 1.8E-06 53.2 5.3 91 108-199 18-123 (404)
5 3o27_A Putative uncharacterize 77.8 2.3 8E-05 32.3 3.9 41 173-213 24-64 (68)
6 4dok_A Similarity to chalcone- 66.1 3.8 0.00013 36.3 3.2 60 178-237 128-192 (208)
7 1pqh_A Aspartate 1-decarboxyla 65.8 63 0.0022 27.6 11.0 78 110-198 27-106 (143)
8 3oug_A Aspartate 1-decarboxyla 61.3 68 0.0023 26.4 9.9 77 110-197 13-91 (114)
9 2c45_A Aspartate 1-decarboxyla 55.6 69 0.0024 27.2 8.9 79 109-198 9-89 (139)
10 1eyq_A Chalcone-flavonone isom 49.9 8.8 0.0003 34.1 2.7 60 178-238 134-199 (222)
11 4doi_A Chalcone--flavonone iso 44.7 12 0.00041 34.1 2.8 60 177-237 144-209 (246)
12 2vb2_X Copper protein, cation 34.3 25 0.00086 27.0 2.7 27 185-211 59-86 (88)
13 2qcp_X Cation efflux system pr 33.7 27 0.00091 26.3 2.7 27 185-211 51-78 (80)
14 2p5d_A UPF0310 protein mjecl36 29.8 45 0.0015 27.6 3.7 33 179-213 31-68 (147)
15 2kbn_A Conserved protein; nucl 28.4 2E+02 0.007 22.1 7.6 71 105-212 15-88 (109)
16 2k75_A Uncharacterized protein 25.5 1.5E+02 0.0052 22.8 5.9 44 146-211 40-86 (106)
17 1mvf_D MAZE protein, PEMI-like 25.2 76 0.0026 23.2 3.9 33 174-208 13-45 (82)
18 4ayb_H DNA-directed RNA polyme 21.6 97 0.0033 23.9 4.0 25 180-204 49-74 (84)
19 4dol_A AT1G53520, 94270-95700, 21.4 68 0.0023 27.7 3.4 57 179-236 139-200 (217)
20 2l55_A SILB,silver efflux prot 20.6 61 0.0021 24.5 2.6 28 185-212 45-74 (82)
21 3jtz_A Integrase; four strande 20.4 90 0.0031 23.7 3.6 28 143-173 23-50 (88)
22 2l66_A SSO7C4, transcriptional 20.4 1.3E+02 0.0045 20.4 4.1 27 180-208 18-44 (53)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=6.4e-29 Score=206.35 Aligned_cols=109 Identities=36% Similarity=0.702 Sum_probs=98.3
Q ss_pred CCceEeEEEecccCCCCCCCceEeehhhhhhcCCCCCC---CCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeec-Chh
Q 041864 105 GRLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPVLES---KEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLE-NTG 180 (300)
Q Consensus 105 ~~~~~LF~KvLT~SDVgslgRLVIPK~~AE~~LP~Ld~---~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLt-GW~ 180 (300)
+...++|+|+||+|||++++||+||+++||+|||.++. .+++.|.++|.+| ++|+|+|+|| +++++|+|+ ||.
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~G-k~W~fr~~~~--~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNG-KVWRFRYSYW--NSSQSYVLTKGWS 84 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTT-EEEEEEEEEE--TTTTEEEEESSHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCC-CEEEEEEEEE--CCCCceEEcCChH
Confidence 44588999999999999889999999999999999874 4789999999999 5999999999 667899998 699
Q ss_pred hHHhhcCCCCCCEEEEEEcCC-CCeEEEEEEEcCCCC
Q 041864 181 DFVNAHGLQLGDFIIVYKDDQ-NQNYVIQAKKASDQD 216 (300)
Q Consensus 181 ~FVr~K~LkaGD~IvF~rd~~-~G~L~IgiRRa~~q~ 216 (300)
+||++|+|++||+|+|++++. +++|+|++||+..+.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 999999999999999999864 468999999999654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.63 E-value=2.2e-15 Score=127.73 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=80.6
Q ss_pred ccCCCCceEeEEEecccCCCCCCCceEeehhhhhhcCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeec-Ch
Q 041864 101 EIDPGRLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLE-NT 179 (300)
Q Consensus 101 ~~d~~~~~~LF~KvLT~SDVgslgRLVIPK~~AE~~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLt-GW 179 (300)
.+.+. .+.|.|+||+|||....+|.||++.|++|||..+ ..+.++|. | +.|.++|.|+ +. + +.|+ ||
T Consensus 41 ~~~s~--~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~----~~i~L~~~-g-k~W~v~~~~~--~~-~-~~ls~GW 108 (146)
T 4i1k_A 41 TFEPT--NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS----GFIKVQLA-E-KQWPVRCLYK--AG-R-AKFSQGW 108 (146)
T ss_dssp HCCCS--SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC----SEEEEEET-T-EEEEEEEEEE--TT-E-EEECTTH
T ss_pred HcCCC--CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC----eEEEEEEC-C-cEEEEEEEEe--CC-c-EEECCch
Confidence 34444 5699999999999977789999999999999753 34555787 5 6999999998 32 3 5565 79
Q ss_pred hhHHhhcCCCCCCEEEEEEcCCCC-eEEEEEEEcC
Q 041864 180 GDFVNAHGLQLGDFIIVYKDDQNQ-NYVIQAKKAS 213 (300)
Q Consensus 180 ~~FVr~K~LkaGD~IvF~rd~~~G-~L~IgiRRa~ 213 (300)
..||++|+|++||.|+|...+... .|.|.|-|+.
T Consensus 109 ~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 109 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp HHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred HHHHHHcCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 999999999999999999876533 5778887764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.45 E-value=5.1e-13 Score=105.93 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=71.6
Q ss_pred eEeEEEecccCCCCCCCceEeehhhhhhcCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeec-ChhhHHhhc
Q 041864 108 RFLFQKELKNSDVSSLRRMILPKKAAEAHLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLE-NTGDFVNAH 186 (300)
Q Consensus 108 ~~LF~KvLT~SDVgslgRLVIPK~~AE~~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLt-GW~~FVr~K 186 (300)
.+.|.|+|+++|. ..+|.||++.++.+.|.+ +..+.++|..|+ +|.+++.++ ++ .+.|+ ||.+||++|
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~-~W~v~~~~~--~~--~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGR-SWTVRMKKR--GE--KVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSC-EEEEEEEEE--TT--EEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCC-EEEEEEEEE--CC--cEEEccChHHHHHHc
Confidence 5689999999984 479999999997776543 235666999995 999999987 22 35555 799999999
Q ss_pred CCCCCCEEEEEEcCCCCeEEEEE
Q 041864 187 GLQLGDFIIVYKDDQNQNYVIQA 209 (300)
Q Consensus 187 ~LkaGD~IvF~rd~~~G~L~Igi 209 (300)
+|++||.|+|...+. ..+.|.|
T Consensus 77 ~L~~GD~lvF~~~~~-~~f~V~I 98 (104)
T 1yel_A 77 NLEDGKYLQFIYDRD-RTFYVII 98 (104)
T ss_dssp TCCTTCEEEEEECSS-SEEEEEE
T ss_pred CCCCCCEEEEEEcCC-CeEEEEE
Confidence 999999999988653 5666665
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.10 E-value=0.052 Score=53.19 Aligned_cols=91 Identities=11% Similarity=0.177 Sum_probs=64.6
Q ss_pred eEeEEEecccCCCCC----CCceEeehhhhhhcCCCCCC----CCceEEE--EEeCCCCeEEEEEEEEcCC----CCCcc
Q 041864 108 RFLFQKELKNSDVSS----LRRMILPKKAAEAHLPVLES----KEGIFIS--MEDLDGLHVWTFKYRFWPN----NNSRM 173 (300)
Q Consensus 108 ~~LF~KvLT~SDVgs----lgRLVIPK~~AE~~LP~Ld~----~eGi~L~--V~D~~G~k~W~FRf~yw~N----nkSR~ 173 (300)
...|.|.|++.|++. ...+.+||..+..+||.|.. ++-+.+. +.|.+.. .+.++++|+-| +....
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p-~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCP-DSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCC-CEEEEEEEECGGGTTSCCCE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCc-eEEEEEEEecccccCCCCCc
Confidence 578999999999993 57899999878899988872 1223333 3444443 55999998721 24457
Q ss_pred eeecCh-hhHHhhcCCCCCCEEEEEEc
Q 041864 174 YVLENT-GDFVNAHGLQLGDFIIVYKD 199 (300)
Q Consensus 174 YVLtGW-~~FVr~K~LkaGD~IvF~rd 199 (300)
|-|+.| ..+-=.+...+||.++|-+.
T Consensus 97 yRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEeecCCCCcccccCCCCCEEEEEEe
Confidence 999987 44555577888998888654
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=77.82 E-value=2.3 Score=32.33 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.7
Q ss_pred ceeecChhhHHhhcCCCCCCEEEEEEcCCCCeEEEEEEEcC
Q 041864 173 MYVLENTGDFVNAHGLQLGDFIIVYKDDQNQNYVIQAKKAS 213 (300)
Q Consensus 173 ~YVLtGW~~FVr~K~LkaGD~IvF~rd~~~G~L~IgiRRa~ 213 (300)
.|.++==.+++++-++++||.+.+.=+..+|++.++.+|-.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 35555448999999999999999987766799999999854
No 6
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=66.11 E-value=3.8 Score=36.30 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=42.7
Q ss_pred ChhhHHhhcCCCCCCEEEEEEcCCCCeEEEEEEEcCCCCc--cCcc--cccccccccc-cCcccc
Q 041864 178 NTGDFVNAHGLQLGDFIIVYKDDQNQNYVIQAKKASDQDV--YTNL--TSDSVNDILL-NDYEVN 237 (300)
Q Consensus 178 GW~~FVr~K~LkaGD~IvF~rd~~~G~L~IgiRRa~~q~~--~~~~--~~~~v~~~~~-~~~~~~ 237 (300)
.-.++.+.+.|++||.|.|.|.+..|.|.|.+.+..++.. .+++ +.+|+-++++ -+..++
T Consensus 128 ~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~~~~~~~I~~~~l~~All~~yl~G~~pvs 192 (208)
T 4dok_A 128 KVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGSRGVS 192 (208)
T ss_dssp HHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTSCCEEEEECCHHHHHHHHHHHSCTTTCSC
T ss_pred HHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCEeccccccCCHHHHHHHHHHeeCCCCCCC
Confidence 3566778889999999999998777999999887665433 2332 2367777777 555554
No 7
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=65.81 E-value=63 Score=27.59 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=55.4
Q ss_pred eEEEecccCCCCCCCceEeehhhhhh--cCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeecChhhHHhhcC
Q 041864 110 LFQKELKNSDVSSLRRMILPKKAAEA--HLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLENTGDFVNAHG 187 (300)
Q Consensus 110 LF~KvLT~SDVgslgRLVIPK~~AE~--~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLtGW~~FVr~K~ 187 (300)
+=.-+.|+.|+..-|.+.|..+..++ ++| +-.+.++|.....-| =.|.+.....|+.-.|.| .-++.
T Consensus 27 IHRatVT~AdL~Y~GSITID~dLldaAgIl~------~EkV~IvNvnNG~Rf-eTYvI~GerGSG~I~lNG----AAArl 95 (143)
T 1pqh_A 27 LHRVKVTHADLHYEGTCAIDQDFLDAAGILE------NEAIDIWNVTNGKRF-STYAIAAERGSRIISVNG----AAAHC 95 (143)
T ss_dssp EEEEECCBCCSSSCCCEEEEHHHHHHHTCCT------TCEEEEEETTTCCEE-EEEEEEECTTCCCEECCG----GGGGT
T ss_pred hcceEEeccccccceeEEECHHHHHHcCCCC------CCEEEEEECCCCceE-EEEEEEccCCCceEEech----HHHcc
Confidence 44557899999999999999997764 566 345777887744222 245665444456666666 45788
Q ss_pred CCCCCEEEEEE
Q 041864 188 LQLGDFIIVYK 198 (300)
Q Consensus 188 LkaGD~IvF~r 198 (300)
.++||.|+++-
T Consensus 96 ~~~GD~VII~s 106 (143)
T 1pqh_A 96 ASVGDIVIIAS 106 (143)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99999999863
No 8
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=61.28 E-value=68 Score=26.44 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=54.0
Q ss_pred eEEEecccCCCCCCCceEeehhhhhh--cCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeecChhhHHhhcC
Q 041864 110 LFQKELKNSDVSSLRRMILPKKAAEA--HLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLENTGDFVNAHG 187 (300)
Q Consensus 110 LF~KvLT~SDVgslgRLVIPK~~AE~--~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLtGW~~FVr~K~ 187 (300)
+=.-+.|..|+..-|.+.|..+..++ ++| .-.+.+.+...+..| =.|.+.....|+.-.|.| .-++.
T Consensus 13 IHratVT~a~L~Y~GSitID~~Ll~aA~i~~------~E~V~I~NvnNG~Rf-~TYvI~GerGSg~I~lNG----AAAr~ 81 (114)
T 3oug_A 13 ISYATVTGKDLFYVGSITIDSEIMKQANIIE------NEKVQVVNLNNGERL-ETYVIKGEPNSKTIALNG----PAARR 81 (114)
T ss_dssp EEEEECCEEESSCC-CEEEEHHHHHHTTCCT------TBEEEEEETTTCCEE-EEEEEEECTTSCCEEEEG----GGGGG
T ss_pred hcceEEecccccccceEEECHHHHHHcCCCc------CCEEEEEECCCCceE-EEEEEEccCCCCEEEeCC----HHHhc
Confidence 44567899999999999999997765 566 455777887744222 245665444456666777 45788
Q ss_pred CCCCCEEEEE
Q 041864 188 LQLGDFIIVY 197 (300)
Q Consensus 188 LkaGD~IvF~ 197 (300)
.++||.|+++
T Consensus 82 ~~~GD~vII~ 91 (114)
T 3oug_A 82 CEIGDQLFII 91 (114)
T ss_dssp CCTTCEEEEE
T ss_pred cCCCCEEEEE
Confidence 8999999986
No 9
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=55.58 E-value=69 Score=27.23 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=56.1
Q ss_pred EeEEEecccCCCCCCCceEeehhhhhh--cCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeecChhhHHhhc
Q 041864 109 FLFQKELKNSDVSSLRRMILPKKAAEA--HLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLENTGDFVNAH 186 (300)
Q Consensus 109 ~LF~KvLT~SDVgslgRLVIPK~~AE~--~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLtGW~~FVr~K 186 (300)
.+-.-+.|+.|+..-|.+.|..+..++ ++| +-.+.+.|.+....| =.|.+.....|+.-.|.| .-++
T Consensus 9 KIHRatVT~AdL~Y~GSITID~dLldaAgIl~------~EkV~IvNvnNG~Rf-eTYvI~GerGSG~I~lNG----AAAr 77 (139)
T 2c45_A 9 KIHRATVTCADLHYVGSVTIDADLMDAADLLE------GEQVTIVDIDNGARL-VTYAITGERGSGVIGING----AAAH 77 (139)
T ss_dssp EEEEEECCCEESSSCCEEEEEHHHHHHTTCCS------SCCEEEEETTTCCEE-EECEEEECTTTTCEEEES----STTT
T ss_pred cccceEEeccccccceeeEECHHHHHHcCCCC------CCEEEEEECCCCceE-EEEEEEccCCCCEEEEch----HHHc
Confidence 455678999999999999999997765 566 334667887644222 245555444456667777 4578
Q ss_pred CCCCCCEEEEEE
Q 041864 187 GLQLGDFIIVYK 198 (300)
Q Consensus 187 ~LkaGD~IvF~r 198 (300)
..++||.|+++-
T Consensus 78 l~~~GD~vII~a 89 (139)
T 2c45_A 78 LVHPGDLVILIA 89 (139)
T ss_dssp TSCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 889999999974
No 10
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=49.86 E-value=8.8 Score=34.11 Aligned_cols=60 Identities=7% Similarity=0.104 Sum_probs=41.0
Q ss_pred ChhhHHhhcCCCCCCEEEEEEcCCCCeEEEEEEEcCC----CCccCc--ccccccccccccCccccc
Q 041864 178 NTGDFVNAHGLQLGDFIIVYKDDQNQNYVIQAKKASD----QDVYTN--LTSDSVNDILLNDYEVNR 238 (300)
Q Consensus 178 GW~~FVr~K~LkaGD~IvF~rd~~~G~L~IgiRRa~~----q~~~~~--~~~~~v~~~~~~~~~~~~ 238 (300)
...++.+.+.+++||.|.|.|.+ +|.+.|.+.+..+ +...++ .+.+|+-++++-+..++.
T Consensus 134 ~f~~~F~~~~~~kG~~i~~~~~p-~g~l~is~~~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp 199 (222)
T 1eyq_A 134 KFAEAFKPVNFPPGASVFYRQSP-DGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSP 199 (222)
T ss_dssp HHHHHHTTCEECTTCEEEEEEET-TTEEEEEEESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCC
T ss_pred HHHHHhCCCCCCCCCEEEEEEcC-CCceEEEEEeCCccccccccccCCHHHHHHHHHHhhCCCCCCH
Confidence 34556677779999999999964 5888888766554 333333 333788888886665543
No 11
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=44.73 E-value=12 Score=34.13 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=41.1
Q ss_pred cChhhHHhhcCCCCCCEEEEEEcCCCCeEEEEEEEcCCC----CccCcc--cccccccccccCcccc
Q 041864 177 ENTGDFVNAHGLQLGDFIIVYKDDQNQNYVIQAKKASDQ----DVYTNL--TSDSVNDILLNDYEVN 237 (300)
Q Consensus 177 tGW~~FVr~K~LkaGD~IvF~rd~~~G~L~IgiRRa~~q----~~~~~~--~~~~v~~~~~~~~~~~ 237 (300)
....++.+.+.|++||.|.|.|. +.|.+.|.+.+..+. ...+++ +.+|+-++++-+..++
T Consensus 144 ~~F~~~F~~~~l~kGs~I~~~~~-p~g~l~i~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVs 209 (246)
T 4doi_A 144 EKFLEIFKEETFPPGSSILFALS-PTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVS 209 (246)
T ss_dssp HHHHHHHTTCEECTTCEEEEEEC-TTSEEEEEEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSC
T ss_pred HHHHHHhccCcCCCCCEEEEEEe-CCCcEEEEEecCCccccccccccCCHHHHHHHHHHhcCCCCCC
Confidence 34566777888999999999997 458899988765541 222332 2367777777666554
No 12
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=34.28 E-value=25 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=19.2
Q ss_pred hcCCCCCCEEEEEEcCCCCeEEEE-EEE
Q 041864 185 AHGLQLGDFIIVYKDDQNQNYVIQ-AKK 211 (300)
Q Consensus 185 ~K~LkaGD~IvF~rd~~~G~L~Ig-iRR 211 (300)
-.+|++||.|.|.-...+|.|.|. +++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 468999999999765445677654 444
No 13
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=33.66 E-value=27 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=18.9
Q ss_pred hcCCCCCCEEEEEEcCCCCeEEEE-EEE
Q 041864 185 AHGLQLGDFIIVYKDDQNQNYVIQ-AKK 211 (300)
Q Consensus 185 ~K~LkaGD~IvF~rd~~~G~L~Ig-iRR 211 (300)
-.+|++||.|.|.-...+|.|.|. +++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999755445667654 443
No 14
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=29.84 E-value=45 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=22.1
Q ss_pred hhhHHhhcCCCCCCEEEEE-----EcCCCCeEEEEEEEcC
Q 041864 179 TGDFVNAHGLQLGDFIIVY-----KDDQNQNYVIQAKKAS 213 (300)
Q Consensus 179 W~~FVr~K~LkaGD~IvF~-----rd~~~G~L~IgiRRa~ 213 (300)
..+|.| ..++||.++|| ..++.+.-++|+=+-.
T Consensus 31 arn~lr--~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~ 68 (147)
T 2p5d_A 31 YKNTIN--KVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVV 68 (147)
T ss_dssp GHHHHT--TCCTTCEEEEEECCBCSTTCBCCEEEEEEEEC
T ss_pred HHHHHH--hCCCCCEEEEEEecccCCCCCCCEEEEEEEEe
Confidence 467777 79999999999 4333344556554433
No 15
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=28.43 E-value=2e+02 Score=22.13 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=44.9
Q ss_pred CCceEeEEEecccCCCCCCCceEeehhhhhhcCCCCCCCCceEEEEEeCCCCeEEEEEEEEcCCCCCcceeecChhhHHh
Q 041864 105 GRLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPVLESKEGIFISMEDLDGLHVWTFKYRFWPNNNSRMYVLENTGDFVN 184 (300)
Q Consensus 105 ~~~~~LF~KvLT~SDVgslgRLVIPK~~AE~~LP~Ld~~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLtGW~~FVr 184 (300)
.....++-|+++..+..+ ....+.+.+.|..| +.+++.| +.+ .
T Consensus 15 ~~~v~v~~~V~~~~~~~~-------------------~~~~~~~~l~DeTG----~I~~t~W--~~~------------~ 57 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTH-------------------ESISQVGLLGDETG----IIKFTIW--KNA------------E 57 (109)
T ss_dssp TCEEEEEEEEEEEEECCC-------------------SSEEEEEEEECTTC----CEEEEEE--GGG------------C
T ss_pred CCcEEEEEEEEEeEcCCC-------------------CeEEEEEEEECCCC----eEEEEEE--Ccc------------c
Confidence 345677888888765321 11234477899988 3778888 322 2
Q ss_pred hcCCCCCCEEEEE---EcCCCCeEEEEEEEc
Q 041864 185 AHGLQLGDFIIVY---KDDQNQNYVIQAKKA 212 (300)
Q Consensus 185 ~K~LkaGD~IvF~---rd~~~G~L~IgiRRa 212 (300)
...|++||.|.+. .+..+|.+.+.+-+.
T Consensus 58 ~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 58 LPLLEQGESYLLRSVVVGEYNDRFQVQVNKN 88 (109)
T ss_dssp CCCCCTTCEEEEEEEEEEEETTEEEEEECSS
T ss_pred ccccCCCCEEEEEEEEEEEECCEEEEEECCc
Confidence 3479999999985 234567666655443
No 16
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=25.47 E-value=1.5e+02 Score=22.83 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCeEEEEEEEEcCCCCCcceeecChhhHHhhcCCCCCCEEEEEEc---CCCCeEEEEEEE
Q 041864 146 IFISMEDLDGLHVWTFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIIVYKD---DQNQNYVIQAKK 211 (300)
Q Consensus 146 i~L~V~D~~G~k~W~FRf~yw~NnkSR~YVLtGW~~FVr~K~LkaGD~IvF~rd---~~~G~L~IgiRR 211 (300)
..+.+.|..| +.+++.| +.. |++||.|.+... ..+|++.+.+-|
T Consensus 40 ~~~~l~DeTG----~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~ 86 (106)
T 2k75_A 40 YQGYIEDDTA----RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGD 86 (106)
T ss_dssp EEEEEECSSC----EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECT
T ss_pred EEEEEEcCCC----eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECC
Confidence 3577789888 4788899 332 999999998732 235665555443
No 17
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=25.19 E-value=76 Score=23.22 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=24.4
Q ss_pred eeecChhhHHhhcCCCCCCEEEEEEcCCCCeEEEE
Q 041864 174 YVLENTGDFVNAHGLQLGDFIIVYKDDQNQNYVIQ 208 (300)
Q Consensus 174 YVLtGW~~FVr~K~LkaGD~IvF~rd~~~G~L~Ig 208 (300)
+.++==.++++.-+|.+||.|.|... +|.+.|.
T Consensus 13 ~~v~iPk~~~~~lgl~~gd~v~i~~~--~~~iii~ 45 (82)
T 1mvf_D 13 PAVRIPATLMQALNLNIDDEVKIDLV--DGKLIIE 45 (82)
T ss_dssp EEEECCHHHHHHTTCCTTCBEEEEEE--TTEEEEE
T ss_pred cEEEECHHHHHHcCCCCCCEEEEEEE--CCEEEEE
Confidence 33342367899999999999999875 4666664
No 18
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=21.64 E-value=97 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=19.4
Q ss_pred hhHHhhcCCCCCCEEEEEEcCC-CCe
Q 041864 180 GDFVNAHGLQLGDFIIVYKDDQ-NQN 204 (300)
Q Consensus 180 ~~FVr~K~LkaGD~IvF~rd~~-~G~ 204 (300)
-.-++.-+|+.||.|-+.|.+. .|+
T Consensus 49 DPva~~~g~k~GdVvkI~R~S~tag~ 74 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKSQLYGE 74 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEETTTEE
T ss_pred CHhHHhhCCCCCCEEEEEEcCCCCCc
Confidence 4567788999999999999754 344
No 19
>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}
Probab=21.41 E-value=68 Score=27.72 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=34.4
Q ss_pred hhhHHhhcCCCCCCEEEEEEcCCCCeEEEEEEEcC---CCCccCc--ccccccccccccCccc
Q 041864 179 TGDFVNAHGLQLGDFIIVYKDDQNQNYVIQAKKAS---DQDVYTN--LTSDSVNDILLNDYEV 236 (300)
Q Consensus 179 W~~FVr~K~LkaGD~IvF~rd~~~G~L~IgiRRa~---~q~~~~~--~~~~~v~~~~~~~~~~ 236 (300)
...+.+.+.+++||.|.|.+.+. |.+.|.+.... +....++ ...+|+.++||-+--+
T Consensus 139 f~~~F~d~~v~kGd~i~~~~~p~-~~l~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~ 200 (217)
T 4dol_A 139 FCCIFQNRPLNKGSVILLTWINT-SNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPV 200 (217)
T ss_dssp HHHHHTTCCBCTTCEEEEEEEET-TEEEEEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCS
T ss_pred HHHHhCCCcCCCCCEEEEEEcCC-CCEEEEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCC
Confidence 35556667899999999998754 56666665322 1112222 2336777777754433
No 20
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.58 E-value=61 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=19.0
Q ss_pred hcCCCCCCEEEEEEcCCCC-eEEEE-EEEc
Q 041864 185 AHGLQLGDFIIVYKDDQNQ-NYVIQ-AKKA 212 (300)
Q Consensus 185 ~K~LkaGD~IvF~rd~~~G-~L~Ig-iRRa 212 (300)
-.+|++||.|.|.-...++ .|.|. +++.
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 4679999999996543334 77754 5554
No 21
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.41 E-value=90 Score=23.67 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=19.1
Q ss_pred CCceEEEEEeCCCCeEEEEEEEEcCCCCCcc
Q 041864 143 KEGIFISMEDLDGLHVWTFKYRFWPNNNSRM 173 (300)
Q Consensus 143 ~eGi~L~V~D~~G~k~W~FRf~yw~NnkSR~ 173 (300)
..|..|.|. ..|.+.|.|+|++- ++.+.
T Consensus 23 g~GL~L~V~-psG~K~w~~ryr~~--Gk~~~ 50 (88)
T 3jtz_A 23 SHGLYLLVK-PGGSRHWYLKYRIS--GKESR 50 (88)
T ss_dssp STTEEEEEC-TTSCEEEEEEEEET--TEEEE
T ss_pred CCceEEEEe-cCCCEEEEEEEEeC--CeEEE
Confidence 357777776 45668999999863 55443
No 22
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.35 E-value=1.3e+02 Score=20.43 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=20.5
Q ss_pred hhHHhhcCCCCCCEEEEEEcCCCCeEEEE
Q 041864 180 GDFVNAHGLQLGDFIIVYKDDQNQNYVIQ 208 (300)
Q Consensus 180 ~~FVr~K~LkaGD~IvF~rd~~~G~L~Ig 208 (300)
.++.+.-+|++||.+.|.-++ +.+.|.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~--~~ivl~ 44 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE--SEGVVK 44 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS--SSCCEE
T ss_pred HHHHHHcCcCCCCEEEEEEEC--CEEEEE
Confidence 567788899999999998753 345554
Done!