BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041866
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
K +T E A +NTKD W ++HN VYDVT++L++HPGG++V++ G
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAG 53
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++V+L G
Sbjct: 5 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAG 49
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++V+L G
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAG 51
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++++L G
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAG 51
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 61
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 61
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 56
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 61
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 61
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 61
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A N+ + W+V+H +VYDVT +L++HPGG++V+L G
Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAG 56
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
K YT++E HN W+++H KVYD+T +L +HPGG++V+L G
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAG 49
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++++L G
Sbjct: 12 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAG 56
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLA 57
K YT++E HN W+++H KVYD+T +L++HPGG++V+ A G A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATA 54
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A HNT + W+V+H +VYD+T +L +HPGG++V+ G
Sbjct: 13 YRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAG 57
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T YL++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGG 50
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++V+ G
Sbjct: 7 YRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAG 51
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 EAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
E A HN DDCW+V++ VYD+T +L +HPGG DV+ G A+
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAI 56
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLA 57
K YT++E HN W+++H KVYD+T +L++HPGG+ V+ A G A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATA 54
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
K YT++E HN W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAG 56
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 5 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGG 52
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGG 57
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLA 57
K YT++E HN W+++H KVYD+T +L++HPGG+ V+ A G A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATA 54
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 52
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAG 55
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 9 TMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
T +E HN KDDCWI + VY+V+ Y++ HPGG+D ++ A G+
Sbjct: 9 TEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGS 53
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 8 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATG 52
Y ++E A NT ++ W+V+H +VYD+T +L +HPGG++V+ G
Sbjct: 12 YRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAG 56
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 50
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 50
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 50
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 50
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T YL++HPGG++V+ G
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGG 52
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGG 50
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGG 52
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 7 LYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNS 54
++T+++ A H++ DDCW+ +H KVYD+T Y+ +HPG ++L G
Sbjct: 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQE 56
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGG 57
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 9 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGG 56
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGG 52
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E H W+++H+KVYD+T +L++HPGG++V+ G
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGG 52
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLA 57
K YT++E HN W+++H KVYD+T +L++HPGG+ V+ G A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATA 54
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++ + G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGG 50
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++ + G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGG 50
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++HPGG++ + G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGG 50
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
K YT++E HN W+++H KVYD+T +L++H GG++V+ G
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGG 50
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAV 58
K YT +E A HNT++D WI+ +V+D+TS+ +HPGG V+L G +V
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSV 55
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 7 LYTMQEAAHHNTKD-DCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGN 53
+YT +E + H + + W+ + ++V+DVT ++D HPGG ++ A G
Sbjct: 6 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGG 53
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 YTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSF 55
YT +E H + ++ W+ V+DVT +++ HPGG D +L A G +
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGAL 55
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 YLDDHPGGDDVVLAATGNSFLAVSLYII 63
Y D + GG V+ A TGN LA Y++
Sbjct: 45 YNDGNIGGRSVIDAGTGNGILACGSYLL 72
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 5 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDD 39
+++ M +N DDC IV +K+ D+T+ D
Sbjct: 32 AEMENMAPVNSNNDSDDCVIVSESKIIDLTNQEQD 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,772,557
Number of Sequences: 62578
Number of extensions: 98562
Number of successful extensions: 239
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 55
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)