Query 041866
Match_columns 77
No_of_seqs 123 out of 1119
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lf5_A Cytochrome B5 reductase 99.9 9.8E-27 3.4E-31 139.0 4.0 66 1-68 1-66 (88)
2 1cyo_A Cytochrome B5; electron 99.9 1.1E-25 3.8E-30 135.5 3.7 66 2-69 1-67 (93)
3 2ibj_A Cytochrome B5, CYTB5; F 99.9 1.9E-25 6.4E-30 133.0 2.8 65 2-68 3-68 (88)
4 3ner_A Cytochrome B5 type B; h 99.9 3.3E-25 1.1E-29 133.3 3.7 66 2-69 6-72 (92)
5 1hko_A Cytochrome B5; electron 99.9 2.2E-25 7.6E-30 136.7 1.7 67 1-69 4-71 (104)
6 1cxy_A Cytochrome B5; helix, b 99.9 3.5E-25 1.2E-29 132.4 1.5 66 2-69 4-74 (90)
7 2keo_A Probable E3 ubiquitin-p 99.9 1.1E-25 3.9E-30 139.7 -1.5 70 1-72 19-89 (112)
8 1x3x_A Cytochrome B5; hemoprot 99.9 1.6E-24 5.6E-29 127.6 1.0 61 4-65 2-62 (82)
9 1mj4_A Sulfite oxidase; cytoch 99.9 9.7E-24 3.3E-28 124.3 2.6 59 2-63 1-60 (82)
10 1kbi_A Cytochrome B2, L-LCR; f 99.8 1.2E-20 4.2E-25 140.0 4.4 66 3-70 6-71 (511)
11 1sox_A Sulfite oxidase; oxidor 99.8 2.4E-19 8.1E-24 132.2 4.4 65 2-69 1-70 (466)
12 1j03_A Putative steroid bindin 99.7 2E-18 7E-23 105.3 3.1 58 6-67 3-65 (102)
13 2jxf_A NS4B(40-69), genome pol 69.5 0.36 1.2E-05 22.7 -1.5 16 60-75 9-24 (30)
14 1ho8_A Vacuolar ATP synthase s 49.9 1.7 5.6E-05 32.3 -1.7 25 30-54 426-450 (480)
15 1u5l_A Prion protein; pRNP, PR 29.2 19 0.00063 21.6 0.9 16 62-77 32-47 (108)
16 2kca_A Bacteriophage SPP1 comp 25.3 56 0.0019 18.1 2.6 20 20-39 70-90 (109)
No 1
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.93 E-value=9.8e-27 Score=138.99 Aligned_cols=66 Identities=36% Similarity=0.668 Sum_probs=62.5
Q ss_pred CCCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHhhcCcc
Q 041866 1 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYIIYLSWN 68 (77)
Q Consensus 1 ~~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~~H~~~ 68 (77)
|..+++.||.+||++|+++++|||+|+|+|||||+|+..||||.++|+.++|+|+|+ .|+.+|++.
T Consensus 1 ~~~~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~--~F~~~h~~~ 66 (88)
T 3lf5_A 1 MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTE--LFDQVHRWV 66 (88)
T ss_dssp -CCSSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHH--HHHHHHTTC
T ss_pred CCCCCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchH--HHHHHCCcH
Confidence 788999999999999999999999999999999999999999999999999999999 599999874
No 2
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.91 E-value=1.1e-25 Score=135.47 Aligned_cols=66 Identities=32% Similarity=0.635 Sum_probs=60.6
Q ss_pred CCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHhh-cCccc
Q 041866 2 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYIIY-LSWNF 69 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~~-H~~~~ 69 (77)
|.+++.||++||++|+++++|||+|+|+|||||+|+..||||..+|+.++|+|+|+ .|+.+ |+.+.
T Consensus 1 s~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~--~f~~~~Hs~~a 67 (93)
T 1cyo_A 1 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATE--NFEDVGHSTDA 67 (93)
T ss_dssp CCSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHH--HHHHTTCCHHH
T ss_pred CCCCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchH--HHHHcCCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999 58875 88653
No 3
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.91 E-value=1.9e-25 Score=133.02 Aligned_cols=65 Identities=37% Similarity=0.671 Sum_probs=59.8
Q ss_pred CCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHh-hcCcc
Q 041866 2 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYII-YLSWN 68 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~-~H~~~ 68 (77)
+++++.||++||++|+++++|||+|+|+|||||+|+..||||..+|+.++|+|+|+ .|.. .|+.+
T Consensus 3 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~--~f~~~~Hs~~ 68 (88)
T 2ibj_A 3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATE--HFEDVGHSSD 68 (88)
T ss_dssp CCCCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHH--HHHHHTCCHH
T ss_pred CccCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchH--HHHHcCCCHH
Confidence 45778999999999999999999999999999999999999999999999999999 4886 48854
No 4
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.91 E-value=3.3e-25 Score=133.30 Aligned_cols=66 Identities=33% Similarity=0.623 Sum_probs=60.6
Q ss_pred CCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHh-hcCccc
Q 041866 2 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYII-YLSWNF 69 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~-~H~~~~ 69 (77)
.++++.||++||++|+++++|||+|+|+|||||+|+..||||..+|+.++|+|+|+ .|+. .|+.+.
T Consensus 6 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~--~F~~~~Hs~~a 72 (92)
T 3ner_A 6 ETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASE--SFEDVGHSSDA 72 (92)
T ss_dssp CCCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHH--HHHHTTCCHHH
T ss_pred CCCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchH--HHHHcCCCHHH
Confidence 35788999999999999999999999999999999999999999999999999999 5886 698654
No 5
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.90 E-value=2.2e-25 Score=136.67 Aligned_cols=67 Identities=31% Similarity=0.618 Sum_probs=61.4
Q ss_pred CCCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHhh-cCccc
Q 041866 1 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYIIY-LSWNF 69 (77)
Q Consensus 1 ~~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~~-H~~~~ 69 (77)
+++.++.||++||++|+.+++|||+|+|+|||||+|+..||||..+|+.++|+|+|+ .|+.+ |+.+.
T Consensus 4 ~~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~--~F~~~~Hs~~a 71 (104)
T 1hko_A 4 SSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATE--NFEDVGHSTDA 71 (104)
T ss_dssp CCCCCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHH--HHTTTTCCHHH
T ss_pred ccccCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchH--HHHHcCCCHHH
Confidence 467789999999999999999999999999999999999999999999999999999 58874 88643
No 6
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.90 E-value=3.5e-25 Score=132.45 Aligned_cols=66 Identities=30% Similarity=0.592 Sum_probs=59.5
Q ss_pred CCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHH-----hhcCccc
Q 041866 2 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYI-----IYLSWNF 69 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~-----~~H~~~~ 69 (77)
....+.||++||++|+++++|||+|+|+|||||+|+..||||.++|+.++|+|+|++ |+ ..|+.+.
T Consensus 4 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~--f~~~~~~~~Hs~~a 74 (90)
T 1cxy_A 4 EATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEA--WETKSYGEPHSSLA 74 (90)
T ss_dssp --CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHH--HHHTTTTCCCCHHH
T ss_pred cccCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHH--HhhcccccCCCHHH
Confidence 345688999999999999999999999999999999999999999999999999995 87 7898754
No 7
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-25 Score=139.66 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=62.7
Q ss_pred CCCCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHh-hcCcccccc
Q 041866 1 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYII-YLSWNFPAQ 72 (77)
Q Consensus 1 ~~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~-~H~~~~~~~ 72 (77)
|++.++.||++||++|+++++|||+|+|+|||||+|+..||||.++|+.++|+|+|+ .|+. +|+.+....
T Consensus 19 m~~~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~--~F~~~~Hs~~a~~~ 89 (112)
T 2keo_A 19 NNEKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVV--ALEAALQFEDTRES 89 (112)
T ss_dssp --CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHH--HHHHHHHSTTGGGT
T ss_pred CCCCCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchH--HHhHcCCCHHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999 4887 699876543
No 8
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.89 E-value=1.6e-24 Score=127.57 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=56.2
Q ss_pred CCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHhhc
Q 041866 4 LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYIIYL 65 (77)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~~H 65 (77)
..+.||++||++|+++++|||+|+|+|||||+|+..|||| ++|+.++|+|+|+++.|+.+|
T Consensus 2 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h 62 (82)
T 1x3x_A 2 GDKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPH 62 (82)
T ss_dssp CSCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHH
T ss_pred CCCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhccc
Confidence 4678999999999999999999999999999999999999 999999999999942288887
No 9
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.88 E-value=9.7e-24 Score=124.31 Aligned_cols=59 Identities=29% Similarity=0.657 Sum_probs=51.6
Q ss_pred CCCCCCCCHHHHccccCCCC-eEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHh
Q 041866 2 PTLSKLYTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYII 63 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~-~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~ 63 (77)
|++++.+|++||++|+++++ |||+|+|+|||||+|+..||||.+.|+.++|+| |+ .|+.
T Consensus 1 ~~~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~--~f~~ 60 (82)
T 1mj4_A 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LE--PFWA 60 (82)
T ss_dssp --CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SH--HHHT
T ss_pred CCCCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hH--HHHh
Confidence 46789999999999999987 999999999999999999999988888999999 66 4774
No 10
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.81 E-value=1.2e-20 Score=140.01 Aligned_cols=66 Identities=35% Similarity=0.641 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHccccCCCCeEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHhhcCcccc
Q 041866 3 TLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYIIYLSWNFP 70 (77)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~~H~~~~~ 70 (77)
...+.||++||++|+++++|||+|+|+|||||+|+..||||.++|+.++|+|+|+ .|+.+|+++..
T Consensus 6 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~--~f~~~H~~~~~ 71 (511)
T 1kbi_A 6 MNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTA--IFEPLHAPNVI 71 (511)
T ss_dssp SCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHH--HHGGGSCTTHH
T ss_pred CCCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhh--hhhhcCCHHHH
Confidence 4578999999999999999999999999999999999999999999999999999 59999998643
No 11
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.76 E-value=2.4e-19 Score=132.16 Aligned_cols=65 Identities=28% Similarity=0.521 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHccccCCCC-eEEEEcCeeeeceeccccCCCcHHHHHHhcCCCCchhHHHHh----hcCccc
Q 041866 2 PTLSKLYTMQEAAHHNTKDD-CWIVVHNKVYDVTSYLDDHPGGDDVVLAATGNSFLAVSLYII----YLSWNF 69 (77)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~-~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~~~f~~----~H~~~~ 69 (77)
+++++.||++||++|+++++ |||+|+|+|||||+|+.+||||.++|+.++|+| |++ |.. .|+.+.
T Consensus 1 ~~~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~--f~~~~~~~Hs~~a 70 (466)
T 1sox_A 1 APSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEP--FWALYAVHGEPHV 70 (466)
T ss_dssp --CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHH--HHHHSGGGGSHHH
T ss_pred CCCCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-ccc--ccccccccCCHHH
Confidence 35788999999999999998 999999999999999999999999999999999 885 653 566543
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.72 E-value=2e-18 Score=105.33 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCCCHHHHccccCCC---CeEEEEcCeeeeceeccc-cCCCcHHHHHHhcCCCCchhHHHHhh-cCc
Q 041866 6 KLYTMQEAAHHNTKD---DCWIVVHNKVYDVTSYLD-DHPGGDDVVLAATGNSFLAVSLYIIY-LSW 67 (77)
Q Consensus 6 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~f~~-~HPGG~~~l~~~aGkD~T~~~~f~~~-H~~ 67 (77)
+.+|.+||++|++.+ +|||+|+|+|||||+|.. .||||. +..+||+|+|++ |..+ |+.
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~--f~~~~~~~ 65 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRA--LGKMSKNE 65 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHH--HHHTCCCS
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHH--HHHcCCCh
Confidence 679999999999876 799999999999999977 799998 468999999995 7754 443
No 13
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=69.52 E-value=0.36 Score=22.65 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=14.2
Q ss_pred HHHhhcCccccccccc
Q 041866 60 LYIIYLSWNFPAQVYY 75 (77)
Q Consensus 60 ~f~~~H~~~~~~~~~~ 75 (77)
.|..-|.|||+.++.|
T Consensus 9 ~fW~khMwNfvSGIQY 24 (30)
T 2jxf_A 9 VFWAKHMWNFISGIQY 24 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888999999999877
No 14
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=49.85 E-value=1.7 Score=32.32 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred eeeceeccccCCCcHHHHHHhcCCC
Q 041866 30 VYDVTSYLDDHPGGDDVVLAATGNS 54 (77)
Q Consensus 30 VYDvt~f~~~HPGG~~~l~~~aGkD 54 (77)
-+|+..|++.||.|..++....||+
T Consensus 426 c~Digefvr~~P~gr~i~~~lg~K~ 450 (480)
T 1ho8_A 426 LNDITHVVELLPESIDVLDKTGGKA 450 (480)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHSHHH
T ss_pred cccHHHHHHHCcchhHHHHHcCcHH
Confidence 3899999999999999988887653
No 15
>1u5l_A Prion protein; pRNP, PRP, TSE, membrane protein; NMR {Trachemys scripta} SCOP: d.6.1.1
Probab=29.25 E-value=19 Score=21.63 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.4
Q ss_pred HhhcCcccccccccCC
Q 041866 62 IIYLSWNFPAQVYYNP 77 (77)
Q Consensus 62 ~~~H~~~~~~~~~~~~ 77 (77)
-.-+.|.||.|+||+|
T Consensus 32 Y~eNy~ryPn~VyY~~ 47 (108)
T 1u5l_A 32 WNENSNRYPNQVYYKE 47 (108)
T ss_dssp HHHCSSCCCSCCEECC
T ss_pred HHHHHHHCCCcccccc
Confidence 3467899999999997
No 16
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=25.27 E-value=56 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=15.5
Q ss_pred CCeEEEEcCeeeeceec-ccc
Q 041866 20 DDCWIVVHNKVYDVTSY-LDD 39 (77)
Q Consensus 20 ~~~wv~i~g~VYDvt~f-~~~ 39 (77)
.+..|..+|++|||... .+.
T Consensus 70 ~~~ri~~~g~~y~I~~v~~~~ 90 (109)
T 2kca_A 70 KKMRVIYRGKIVTFIGDPVDL 90 (109)
T ss_dssp SSEEEEETTEEEEEEEEEEEC
T ss_pred CccEEEECCEEEEEEEeccCc
Confidence 35678889999999986 543
Done!