BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041867
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 171/618 (27%), Positives = 272/618 (44%), Gaps = 55/618 (8%)
Query: 112 LQELYIGSNDLRGS--LPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
L+ L + +N + G+ + W +++ L+ L +S N+++G + S ++L E L +S+
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSS 206
Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
N+F I L + S L+ N+L+ + +++ S +L L++SS G
Sbjct: 207 NNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT---ELKLLNISSNQFVGPIP 261
Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
P L L+ + L+ K GE P +L L L L + G S L
Sbjct: 262 PLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF-LQILDLSNNHLT 347
L +S+NNF G +P++ + L + + S N G +P SL N+ L LDLS+N+ +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 348 GEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
G I +L + LYL NN +GKIP L N + L + + N+L
Sbjct: 379 GPILPNLC----------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 408 GPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR------- 459
G IP N + G +P + +++ + L N L G++
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 460 ----DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXH 515
LS NRL G IP W+ L L+ L L +N+ G + +
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 516 GPIPPC-FDNTTLYES---------YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFT 565
G IP F + + Y + + ++ ++ QG +Q++ +
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 566 TKNIV-YIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
NI +Y G LD+S N L G IP +IG++ + LNL HND+ G
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
IP +L+ + LDLS+NKL+G+IP + L L ++ NNLSG IPE QF TF
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 727
Query: 679 ESSYEGNTFLCGLPLPIC 696
+ + N LCG PLP C
Sbjct: 728 PAKFLNNPGLCGYPLPRC 745
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 192/483 (39%), Gaps = 108/483 (22%)
Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
V+L+ L + SN+ +P+ + + ++L+ LD+S N+L+G S + + T ++ L +S+N
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 254
Query: 170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
F PI PL L+ N+ EI L+ L+ L LS + G P
Sbjct: 255 QFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPP 309
Query: 230 KF------------------------LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQ 265
F L L+ ++LS + +GE P L + L
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 266 LSLVNDSLGGPF--RLPIHSHKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNA 321
L L +++ GP L + L L + NN F G IP + + L SL+L S N
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNY 426
Query: 322 LDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXE---GLY-- 376
L G+IPSSLG++ L+ L L N L GEIP+ L E GL
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 377 -------LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNN 429
L+NN L+G+IP+W+G L L + + NN G IP E + N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 430 ISGSLPSCFHPLS---------------------IKQVHLSKNMLHGQLKR--------- 459
+G++P+ S K+ H + N+L Q R
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 460 ----------------------------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
D+SYN L+G IP + + L L LGHN++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 492 GEV 494
G +
Sbjct: 667 GSI 669
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 221/557 (39%), Gaps = 73/557 (13%)
Query: 164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYE 223
L+LSN+H I S+ + L + N L+ +T SL + + L L++SS
Sbjct: 79 LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 135
Query: 224 DGVTFPKFL---YHQHDLETVELSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFR 278
D FP + + LE ++LS ++G W+L + +L+ L++ + + G
Sbjct: 136 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 190
Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338
+ + L LD+S+NNF IP +GD +L + S N L G ++ L++
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 339 LDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWL-GNLTWLQ 397
L++S+N G IP + L L N +G+IP +L G L
Sbjct: 249 LNISSNQFVGPIPP--------------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 398 YIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
+ + NH G +P F S NN SG LP L K + G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------MDTLLK--MRGLK 343
Query: 458 KRDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNLEGEV--XXXXXXXXXXXXXXXXXXXX 514
DLS+N +G +P+ + LS L L L NN G +
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
G IPP N + E + S G + +
Sbjct: 404 TGKIPPTLSNCS------------ELVSLHLSFNYLSGTIPSSLGS-------------- 437
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
LS L L L N L G IP ++ + ++TL L NDL G IPS SN ++ + L
Sbjct: 438 ---LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694
SNN+L G+IP + L+ L + ++ N+ SG IP + N F +P
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 695 ICRSPATMSEASIGNER 711
+ + ++ I +R
Sbjct: 555 MFKQSGKIAANFIAGKR 571
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 171/618 (27%), Positives = 272/618 (44%), Gaps = 55/618 (8%)
Query: 112 LQELYIGSNDLRGS--LPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
L+ L + +N + G+ + W +++ L+ L +S N+++G + S ++L E L +S+
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSS 209
Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
N+F I L + S L+ N+L+ + +++ S +L L++SS G
Sbjct: 210 NNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT---ELKLLNISSNQFVGPIP 264
Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
P L L+ + L+ K GE P +L L L L + G S L
Sbjct: 265 PLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF-LQILDLSNNHLT 347
L +S+NNF G +P++ + L + + S N G +P SL N+ L LDLS+N+ +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 348 GEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
G I +L + LYL NN +GKIP L N + L + + N+L
Sbjct: 382 GPILPNLC----------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 408 GPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR------- 459
G IP N + G +P + +++ + L N L G++
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 460 ----DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXH 515
LS NRL G IP W+ L L+ L L +N+ G + +
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 516 GPIPPC-FDNTTLYES---------YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFT 565
G IP F + + Y + + ++ ++ QG +Q++ +
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 566 TKNIV-YIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
NI +Y G LD+S N L G IP +IG++ + LNL HND+ G
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
IP +L+ + LDLS+NKL+G+IP + L L ++ NNLSG IPE QF TF
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 730
Query: 679 ESSYEGNTFLCGLPLPIC 696
+ + N LCG PLP C
Sbjct: 731 PAKFLNNPGLCGYPLPRC 748
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 192/483 (39%), Gaps = 108/483 (22%)
Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
V+L+ L + SN+ +P+ + + ++L+ LD+S N+L+G S + + T ++ L +S+N
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 257
Query: 170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
F PI PL L+ N+ EI L+ L+ L LS + G P
Sbjct: 258 QFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPP 312
Query: 230 KF------------------------LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQ 265
F L L+ ++LS + +GE P L + L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 266 LSLVNDSLGGPF--RLPIHSHKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNA 321
L L +++ GP L + L L + NN F G IP + + L SL+L S N
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNY 429
Query: 322 LDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXE---GLY-- 376
L G+IPSSLG++ L+ L L N L GEIP+ L E GL
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 377 -------LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNN 429
L+NN L+G+IP+W+G L L + + NN G IP E + N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 430 ISGSLPSCFHPLS---------------------IKQVHLSKNMLHGQLKR--------- 459
+G++P+ S K+ H + N+L Q R
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 460 ----------------------------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
D+SYN L+G IP + + L L LGHN++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 492 GEV 494
G +
Sbjct: 670 GSI 672
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 136/514 (26%), Positives = 209/514 (40%), Gaps = 73/514 (14%)
Query: 164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYE 223
L+LSN+H I S+ + L + N L+ +T SL + + L L++SS
Sbjct: 82 LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 138
Query: 224 DGVTFPKFL---YHQHDLETVELSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFR 278
D FP + + LE ++LS ++G W+L + +L+ L++ + + G
Sbjct: 139 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 193
Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338
+ + L LD+S+NNF IP +GD +L + S N L G ++ L++
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 339 LDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWL-GNLTWLQ 397
L++S+N G IP + L L N +G+IP +L G L
Sbjct: 252 LNISSNQFVGPIPP--------------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 398 YIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
+ + NH G +P F S NN SG LP L K + G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------MDTLLK--MRGLK 346
Query: 458 KRDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXH- 515
DLS+N +G +P+ + LS L L L NN G +
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 516 -GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
G IPP N + E + S G + +
Sbjct: 407 TGKIPPTLSNCS------------ELVSLHLSFNYLSGTIPSSLGS-------------- 440
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
LS L L L N L G IP ++ + ++TL L NDL G IPS SN ++ + L
Sbjct: 441 ---LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
SNN+L G+IP + L+ L + ++ N+ SG IP
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 203/510 (39%), Gaps = 95/510 (18%)
Query: 204 HSLTAPNFQLSRLSLSSGYE------DGVTFPKFL---YHQHDLETVELSHIKMNGE-FP 253
+SL+ P L+ L SG + + + FP + + LE ++LS ++G
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 254 TWLLENNT-KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSL 312
W+L + +L+ L++ + + G + + L LD+S+NNF IP +GD +L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SAL 225
Query: 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXX 372
+ S N L G ++ L++L++S+N G IP
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--------------LPLKSL 271
Query: 373 EGLYLNNNSLSGKIPRWL-GNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS 431
+ L L N +G+IP +L G L + + NH G +P F S NN S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 432 GSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNL 490
G LP L K + G DLS+N +G +P+ + LS L L L NN
Sbjct: 332 GELP---------MDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 491 EGEVXXXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
GPI P L ++ N+ E++
Sbjct: 381 S------------------------GPILP-----NLCQNPKNTLQ-----ELYLQNNGF 406
Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610
G + + E + L LS N L G IP +G+L++++ L L
Sbjct: 407 TGKIPPTLSNCSELVS-----------------LHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
N L G IP +K +E+L L N L G+IP L L S++ N L+GEIP+W
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 671 TAQFATFNESSYEGNTFLCGLP--LPICRS 698
+ N+F +P L CRS
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 37/147 (25%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSN-LKHVESLDLSNNKLNGK 642
L++S N+ +GPIPP L +Q L+L+ N G IP S + LDLS N G
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 643 IP-------------------------HQLVELKTLEVFSVAYNNLSGEIPE----WTAQ 673
+P L++++ L+V +++N SGE+PE +A
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 674 FATFNESSYEGNTFLCGLPLP-ICRSP 699
T + SS N F G LP +C++P
Sbjct: 370 LLTLDLSS---NNF-SGPILPNLCQNP 392
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 133/334 (39%), Gaps = 87/334 (26%)
Query: 377 LNNNSLSG-------KIPRWLGNLTWLQYIIMPN-NHLEGPIPVEFCXXXXXXXXXXSDN 428
+NN LSG IP L NL +L ++ + N+L GPIP +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 429 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN 488
N+SG++P IK + + D SYN L+G++P + L L + N
Sbjct: 112 NVSGAIPDFLS--QIKTL----------VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 489 NLEGEVXXXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
+ G IP +SY + S L F S+
Sbjct: 160 RIS------------------------GAIP---------DSYGSFSKL------FTSMT 180
Query: 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608
+ + +I F N+ ++ DLS N L G G+ Q +
Sbjct: 181 ISRNRLTGKIPP--TFANLNLAFV------------DLSRNMLEGDASVLFGSDKNTQKI 226
Query: 609 NLSHNDL------IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
+L+ N L +GL K++ LDL NN++ G +P L +LK L +V++NN
Sbjct: 227 HLAKNSLAFDLGKVGLS-------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 663 LSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 696
L GEIP+ F+ S+Y N LCG PLP C
Sbjct: 280 LCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 26/224 (11%)
Query: 271 DSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSL 330
++L GP I +L L I++ N G IP + + +L + S NAL G++P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSI 145
Query: 331 GNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWL 390
++ L + N ++G IP+ + ++ N L+GKIP
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYG-----------SFSKLFTSMTISRNRLTGKIPPTF 194
Query: 391 GNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSK 450
NL L ++ + N LEG V F + N+++ + +V LSK
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSK 244
Query: 451 NMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 494
N L+G DL NR+ G++P + L L L + NNL GE+
Sbjct: 245 N-LNG---LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 121/316 (38%), Gaps = 84/316 (26%)
Query: 326 IPSSLGNMKFLQILDLSN-NHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSG 384
IPSSL N+ +L L + N+L G IP +A LY+ + ++SG
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA------------KLTQLHYLYITHTNVSG 115
Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIK 444
IP +L + L + N L G +P N ISG++P + S
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXX 504
++ +S NRL G IP L+ L+ + L N LEG
Sbjct: 176 FTSMT-----------ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------------ 211
Query: 505 XXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEF 564
D + L+ S N+ ++IH
Sbjct: 212 ------------------DASVLFGSDKNT---------------------QKIH----- 227
Query: 565 TTKNIVYIYQGKV-LSL-LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622
KN + GKV LS L+GLDL N++ G +P + L + +LN+S N+L G IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 623 FSNLKHVESLDLSNNK 638
NL+ + +NNK
Sbjct: 288 -GNLQRFDVSAYANNK 302
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 83/222 (37%), Gaps = 14/222 (6%)
Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
P + L + ++H ++G P +L + T L L ++L G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
+ N G IP G S N L G IP + N+ L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 348 GEIPE-----------HLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWL 396
G+ HLA + GL L NN + G +P+ L L +L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 397 QYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGS-LPSC 437
+ + N+L G IP ++ + GS LP+C
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 40/246 (16%)
Query: 111 HLQELYIGS-NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
+L LYIG N+L G +P + LT L L ++ ++G+I L + ++ L S N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN 135
Query: 170 HFQ--IPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
+P S+ L N L D N ++ I S+ + F + +++S G
Sbjct: 136 ALSGTLPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSKLF--TSMTISRNRLTGKI 190
Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRL-PIHSHKR 286
P F +L V+LS + G+ + L ++ +++ L +SL F L + K
Sbjct: 191 PPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKN 245
Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
L LD+ NN G ++P L +KFL L++S N+L
Sbjct: 246 LNGLDLRNNRIYG-------------------------TLPQGLTQLKFLHSLNVSFNNL 280
Query: 347 TGEIPE 352
GEIP+
Sbjct: 281 CGEIPQ 286
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 603 TRIQTLNLSHNDLIGL-------IPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLE 654
T QT +++ DL GL IPS+ +NL ++ L + N L G IP + +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 714
+ + N+SG IP++ +Q T + N LP I P + GN
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 715 LIDMDSFFITFTTSYVI 731
+ D F TS I
Sbjct: 165 IPDSYGSFSKLFTSMTI 181
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 108 SPVHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
S ++L+ELY+GSN L G+LP +LT L +LD+ +NQLT + S+ L +++L++
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 167 SNNHF-QIPISLEPLFNHSRLKTFYADNNELNA 198
N ++P +E L + L D N+L +
Sbjct: 120 CCNKLTELPRGIERL---THLTHLALDQNQLKS 149
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 581 LSGLDLSCNKLIGP--IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
L LDLS N + Q+ NL+ +QTLNLSHN+ +GL F +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 639 LNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690
L+ P + L L+V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 224
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 247
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPN 210
YLS NH +L L N L+ F + LN I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 222
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630
+ ++G S + DLS +K+ + + T ++ L L+ N++ + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 631 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 665
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 602 LTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661
LT + LNLS N L + F NL +E LDLS N + + L L+ ++ N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 662 NLSGEIPE 669
L +P+
Sbjct: 382 QLKS-VPD 388
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 598 QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVF 656
Q+ NL +Q LNLS+N+ +GL F +E LD++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 657 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTF 189
YLS NH +L L N L+ F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTF 189
YLS NH +L L N L+ F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTF 189
YLS NH +L L N L+ F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
GL L+ LY+G+N + ++ LT L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTF 189
YLS NH +L L N L+ F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
L +LY+G N L+ LT L+ L +++NQL SI + LT+++ L LS N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 171 FQ 172
Q
Sbjct: 167 LQ 168
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
L+ L L L N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 638 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEI 667
+L +PH +L +L+T+ +F ++ EI
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 574 QGKVL-SLLSG-------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSN 625
QGK L S+ SG LDL L LT++ LNL +N L L F +
Sbjct: 22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 626 LKHVESLDLSNNKL 639
L + +L L+NN+L
Sbjct: 82 LTELGTLGLANNQL 95
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 104 RGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK 163
RGL L L + N L+ +LT L L +++NQL S+ HLT ++K
Sbjct: 56 RGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK 111
Query: 164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNF----QLSRLSLS 219
LYL N + SL P RL EL Q S+ A F L LSLS
Sbjct: 112 LYLGGNQLK---SL-PSGVFDRLTKL----KELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 220 SGYEDGVTFPKF-----------LYHQHDLETVELSHIKMNGEFPTWLLENNTKLR 264
+ V F +Q D E+ ++ W+ EN+ K++
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ------WIRENSNKVK 213
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
L +LY+G N L+ LT L+ L +++NQL SI + LT+++ L LS N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 171 FQ 172
Q
Sbjct: 167 LQ 168
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
L+ L L L N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 638 KLNGKIPH----QLVELKTLEVFSVAYN 661
+L +PH +L +L+T+ +F ++
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 574 QGKVL-SLLSG-------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSN 625
QGK L S+ SG LDL L LT++ LNL +N L L F +
Sbjct: 22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 626 LKHVESLDLSNNKL 639
L + +L L+NN+L
Sbjct: 82 LTELGTLGLANNQL 95
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 104 RGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK 163
RGL L L + N L+ +LT L L +++NQL S+ HLT ++K
Sbjct: 56 RGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK 111
Query: 164 LYLSNNHFQ-IPISLEPLFNH-SRLKTFYADNNELNA 198
LYL N + +P +F+ ++LK + N+L +
Sbjct: 112 LYLGGNQLKSLP---SGVFDRLTKLKELRLNTNQLQS 145
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 130 MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189
+ L++L++L + NQ+T + SPL LT+++ L + NN L PL N S+L T
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 190 YADNNEL 196
AD+N++
Sbjct: 185 RADDNKI 191
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627
NI I QG SL + L L NK+ + L + L LS N + + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
L ++ DL K+ +PP L+L +N + + F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN--- 640
LDL NK+ NL + TL L +N + + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 641 GKIPHQLVELKTLE 654
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627
NI I QG SL + L L NK+ + L + L LS N + + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
L ++ DL K+ +PP L+L +N + + F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN--- 640
LDL NK+ NL + TL L +N + + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 641 GKIPHQLVELKTLE 654
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 581 LSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
L+ L L N+L +PP++ +LT++ L+L +N+L L F L ++ L L NN+L
Sbjct: 111 LAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 640 NGKIPH----QLVELKTLEVFSVAYNNLSGEIPE 669
++P +L ELKTL++ NN +PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 PVHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLS 167
P ++L + SN L SLP LT LR+L ++ N+L ++ + L ++E L+++
Sbjct: 36 PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93
Query: 168 NNHFQ-IPISL-EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ-LSRLS-LSSGYE 223
+N Q +PI + + L N + L+ D N+L SL F L++L+ LS GY
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRL---DRNQL-------KSLPPRVFDSLTKLTYLSLGYN 143
Query: 224 DGVTFPKFLYHQ-HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIH 282
+ + PK ++ + L+ + L + ++ P + T+L+ L L N+ L
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 283 SHKRLGMLDISNN 295
S ++L ML + N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
LDL NKL LT+++ L L+ N L L F LK++E+L +++NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 644 P----HQLVELKTLEV 655
P QLV L L +
Sbjct: 101 PIGVFDQLVNLAELRL 116
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG------KIPHQL 647
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ LDLS +L P +L+ +Q LN+SHN+ L + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 641 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 700
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 532 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 602 LTRIQTLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660
L+ ++ L ++ N +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 661 NNL 663
NN
Sbjct: 504 NNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG------KIPHQL 647
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ LDLS +L P +L+ +Q LN+SHN+ L + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 641 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 700
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 602 LTRIQTLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660
L+ ++ L ++ N +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 661 NNL 663
NN
Sbjct: 528 NNF 530
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
+P ++ N + ++LS+N + L +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 655 VFSVAYNNLSGEIPE 669
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ +DLS N++ N+T++ TL LS+N L + P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 641 GKIPHQLVELKTLEVFSVAYNNL 663
+L L ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 677
L+P SN KH+ +DLSNN+++ + L ++YN L P +
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 678 NESSYEGN 685
S GN
Sbjct: 105 RLLSLHGN 112
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEXXXXXXXXX 88
FP L+ L +S CE+ + G ++SL HL + + L N +Q ++
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHL----STLILTGNPIQSLALGAFSGLSSL 102
Query: 89 XXXXXXXXXXXRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLT 147
+ + + L+EL + N ++ LP +NLT+L LD+SSN++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 148 GSISSSPLIHLTSIEKLYLSNNHFQIPIS-LEP-LFNHSRLKTFYADNNELNA 198
SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG------KIPHQL 647
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEXXXXXXXXX 88
FP L+ L +S CE+ + G ++SL HL + + L N +Q ++
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHL----STLILTGNPIQSLALGAFSGLSSL 103
Query: 89 XXXXXXXXXXXRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLT 147
+ + + L+EL + N ++ LP +NLT+L LD+SSN++
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 148 GSISSSPLIHLTSIEKLYLSNNHFQIPIS-LEP-LFNHSRLKTFYADNNELNA 198
SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 164 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEXXXXXXXXX 88
FP L+ L +S CE+ + G ++SL HL + + L N +Q ++
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHL----STLILTGNPIQSLALGAFSGLSSL 103
Query: 89 XXXXXXXXXXXRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLT 147
+ + + L+EL + N ++ LP +NLT+L LD+SSN++
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 148 GSISSSPLIHLTSIEKLYLSNNHFQIPIS-LEP-LFNHSRLKTFYADNNELNA 198
SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 164 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEXXXXXXXXX 88
FP L+ L +S CE+ + G ++SL HL + + L N +Q ++
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHL----STLILTGNPIQSLALGAFSGLSSL 104
Query: 89 XXXXXXXXXXXRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLT 147
+ + + L+EL + N ++ LP +NLT+L LD+SSN++
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 148 GSISSSPLIHLTSIEKLYLSNNHFQIPIS-LEP-LFNHSRLKTFYADNNELNA 198
SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 165 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 599 IGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEXXXXXXXXX 88
FP L+ L +S CE+ + G ++SL HL + + L N +Q ++
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHL----STLILTGNPIQSLALGAFSGLSSL 104
Query: 89 XXXXXXXXXXXRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLT 147
+ + + L+EL + N ++ LP +NLT+L LD+SSN++
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 148 GSISSSPLIHLTSIEKLYLSNNHFQIPIS-LEP-LFNHSRLKTFYADNNELNA 198
SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 165 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
T I LNL+HN L L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 663 LSGEIPEWTAQFAT 676
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
S L+ LD+ N + P L ++ LNL HN+L L TF+ ++ L L +N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 639 LNGKIPHQLVELKTLEVFSVAYNNLSG 665
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
T I LNL+HN L L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 663 LSGEIPEWTAQFAT 676
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
S L+ LD+ N + P L ++ LNL HN+L L TF+ ++ L L +N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 639 LNGKIPHQLVELKTLEVFSVAYNNLSG 665
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ LDLS +L L R+Q LN+SHN+L+ L S ++ L + +LD S N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 641 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS 698
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 530 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 582
Query: 699 PATMSEA 705
P M+ +
Sbjct: 583 PVEMNTS 589
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
T I LNL+HN L L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 663 LSGEIPEWTAQFAT 676
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
S L+ LD+ N + P L ++ LNL HN+L L TF+ ++ L L +N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 639 LNGKIPHQLVELKTLEVFSVAYNNLSG 665
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ LDLS +L L R+Q LN+SHN+L+ L S ++ L + +LD S N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 641 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS 698
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 535 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 699 PATMSEA 705
P M+ +
Sbjct: 588 PVEMNTS 594
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
L LQ+L SN + P + NLT+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLSLS 219
+NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 220 SG 221
SG
Sbjct: 258 SG 259
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
K L+ L+ L+LS N I I G LT +Q L+ S N + L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 636 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 247 ANNQISNLAPLSGLTKLTELK 267
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
L LQ+L SN + P + NLT+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLSLS 219
+NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 220 SG 221
SG
Sbjct: 258 SG 259
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
K L+ L+ L+LS N I I G LT +Q L+ S N + L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 636 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 247 ANNQISNLAPLSGLTKLTELK 267
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
V+LQ+LY SN L LT L LD++ N L SI +L S+ +YL NN
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
L LQ+L SN + P + NLT+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLSLS 219
+NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 220 SG 221
SG
Sbjct: 258 SG 259
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
K L+ L+ L+LS N I I G LT +Q LN S N + L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 636 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 247 ANNQISNLAPLSGLTKLTELK 267
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660
T IQ L+L++N L+ STFS LK ++ LDLS N L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 661 NNLSGEIPE 669
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
+ I LNL+HN L L P+ F+ + LD N ++ P L L+V ++ +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 663 LSGEIPEWTAQFAT 676
LS +I + T F T
Sbjct: 85 LS-QISDQTFVFCT 97
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS 664
+ + PS F L+++ LDLSNN + I L+E L+ LE+ +NNL+
Sbjct: 469 VDISPSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLA 517
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
+ ++ L+LSH + L F LK ++ L+L+ NK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 663 LSGEI 667
L GE+
Sbjct: 325 LLGEL 329
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 601 NLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL--KTLEVFS 657
NL + L+LS N + L + +F L ++S+D S+N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 658 VAYNNLSGEIP-EW 670
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 602 LTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661
L+ +Q L L+HN L L P FS+L + L L++N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 662 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 693
L P+ F + + N F+C L
Sbjct: 537 QLLAPNPD---VFVSLSVLDITHNKFICECEL 565
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLT 147
HLQ LY+ N L P ++LT+LR L ++SN+LT
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%)
Query: 600 GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659
G L + L L N L G+ P+ F H++ L L NK+ + L L+ ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 660 YNNLSGEIPEWTAQFATFNESSYEGNTFLC 689
N +S +P + + N F C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
L + +IS N F+ D L LYL NS+ L P+ + N+ L++LDLS+N L
Sbjct: 234 LQIFNISANIFKY-------DFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRL 282
Query: 347 TGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL 406
T +P L C + Y +N ++ +P GNL LQ++ + N L
Sbjct: 283 TS-LPAELG-SCF-----------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Query: 407 E 407
E
Sbjct: 329 E 329
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLT 147
L LY+ N L LP + NL++LR+LD+S N+LT
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
L L L+LS N+L P LT ++ L L H + + + F +LK +E L+LS+
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 637 NKLNGKIPHQL 647
N L +PH L
Sbjct: 236 NNLMS-LPHDL 245
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656
P + L R++ L LS N L + P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 657 SVAYNNL 663
++++NNL
Sbjct: 232 NLSHNNL 238
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 592 IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN---KLNGKIPHQLV 648
+ +P I TR LNL N + + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 649 ELKTLEVF 656
L TLE+F
Sbjct: 84 SLNTLELF 91
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
L L L+LS N+L P LT ++ L L H + + + F +LK +E L+LS+
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 637 NKLNGKIPHQL 647
N L +PH L
Sbjct: 236 NNL-MSLPHDL 245
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656
P + L R++ L LS N L + P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 657 SVAYNNL 663
++++NNL
Sbjct: 232 NLSHNNL 238
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 592 IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN---KLNGKIPHQLV 648
+ +P I TR LNL N + + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 649 ELKTLEVF 656
L TLE+F
Sbjct: 84 SLNTLELF 91
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
C P ++ L + SN ++ S+P + L +L+ L+V+SNQL S+ LTS++K++L
Sbjct: 418 CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWL 475
Query: 167 SNN 169
N
Sbjct: 476 HTN 478
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 599 IGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658
I +L++++ L +SHN + L S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 659 AYNNL 663
A++ L
Sbjct: 101 AFDAL 105
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL--IPSTFSNLKHVESLDLSNNKLNG 641
LD S N L + G+LT ++TL L N L L I + +K ++ LD+S N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN---- 384
Query: 642 KIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 681
SV+Y+ G+ WT + N SS
Sbjct: 385 ---------------SVSYDEKKGDC-SWTKSLLSLNMSS 408
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
LDL NK I IP Q+ L +Q LN++ N L + F L ++ + L N +
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 644 PH 645
P
Sbjct: 485 PR 486
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
I + L N + + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 665 GEIPE 669
E+P+
Sbjct: 93 TELPK 97
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 565 TTKNIVYIYQGKV----------LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND 614
TT ++Y+Y ++ L+ L+ LDL N+L LT++ L+L+ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 615 LIGLIPSTFSNLKHVESLDLSNN 637
L + F NLK + + L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 582 SGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
SG + C+ K + +P I T Q L L N + L P F L + LDL NN+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
P Q LY+ N + P LT L LD+ +NQLT + + LT + +L L++
Sbjct: 37 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 95
Query: 169 NHFQ 172
N +
Sbjct: 96 NQLK 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
I + L N + + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 665 GEIPE 669
E+P+
Sbjct: 93 TELPK 97
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNH 183
SLP L +L +LDVS N+LT S+ L L +++LYL N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 184 SRLKTFYADNNEL 196
+L+ NN+L
Sbjct: 148 PKLEKLSLANNQL 160
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
LQELY+ N+L+ P +T L L +++NQLT + + L L +++ L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 171 -FQIP 174
+ IP
Sbjct: 184 LYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNH 183
SLP L +L +LDVS N+LT S+ L L +++LYL N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 184 SRLKTFYADNNEL 196
+L+ NN+L
Sbjct: 148 PKLEKLSLANNQL 160
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
LQELY+ N+L+ P +T L L +++NQLT + + L L +++ L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 171 -FQIP 174
+ IP
Sbjct: 184 LYTIP 188
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 598 QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGK 642
Q+ NL+ +Q+LNLS+N+ + L F +E LDL+ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 110 VHLQELYIGSNDLRGSLPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
L +LY+G N L+ SLP + N LTSL L++S+NQL S+ + LT +++L L+
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 169 NHFQ 172
N Q
Sbjct: 110 NQLQ 113
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 105 GLCSPVHLQELYIGS--NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162
L LQ+L G+ DL+ + NLT+L LD+SSN+++ S L LT++E
Sbjct: 150 ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 201
Query: 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLS 217
L +NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 202 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 258
Query: 218 LSSG 221
SG
Sbjct: 259 PLSG 262
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 193 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 249
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 250 ANNQISNLAPLSGLTKLTELK 270
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 105 GLCSPVHLQELYIGS--NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162
L LQ+L G+ DL+ + NLT+L LD+SSN+++ S L LT++E
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 202
Query: 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLS 217
L +NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 203 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 218 LSSG 221
SG
Sbjct: 260 PLSG 263
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 251 ANNQISNLAPLSGLTKLTELK 271
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689
+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNH 183
SLP L +L +LDVS N+LT S+ L L +++LYL N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 184 SRLKTFYADNNEL 196
+L+ NN+L
Sbjct: 148 PKLEKLSLANNQL 160
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
LQELY+ N+L+ P +T L L +++NQLT + + L L +++ L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 171 -FQIP 174
+ IP
Sbjct: 184 LYTIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689
+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNH 183
SLP L +L +LDVS N+LT S+ L L +++LYL N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 184 SRLKTFYADNNEL 196
+L+ NN+L
Sbjct: 148 PKLEKLSLANNQL 160
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
LQELY+ N+L+ P +T L L +++NQLT + + L L +++ L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 171 -FQIP 174
+ IP
Sbjct: 184 LYTIP 188
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
HL+EL + N + P NL +LR L + SN+L I L+++ KL +S N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISEN- 114
Query: 171 FQIPISLEPLFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
+I I L+ +F LK+ +N+L + SH + L +L+L +
Sbjct: 115 -KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCNLTSIP-T 169
Query: 230 KFLYHQHDLETVELSHIKMNG 250
+ L H H L + L H+ +N
Sbjct: 170 EALSHLHGLIVLRLRHLNINA 190
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
LS L+ LD+S NK++ + +L +++L + NDL+ + FS L +E L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSG 665
L L L L V + + N++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVESLDLSNNKL 639
L L+L+ N + P NL ++TL L N L LIP F+ L ++ LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI 116
Query: 640 NGKIPHQLVELKTLEVFSVAYNNL 663
+ + +L L+ V N+L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL 140
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
+ LQE+ + L P+ L LR+L+VS NQLT ++ S + ++E L L +N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 602 LTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG---KIPHQLVELKTLEVF 656
LT + LNL+HN L L F L ++ LDLS N+L + +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 105 GLCSPVHLQELYIGS--NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162
L LQ+L G+ DL+ + NLT+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLS 217
L +NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 218 LSSG 221
SG
Sbjct: 255 PLSG 258
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 246 ANNQISNLAPLSGLTKLTELK 266
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 105 GLCSPVHLQELYIGS--NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162
L LQ+L G+ DL+ + NLT+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLS 217
L +NN + PL + L + N+L A +T L N Q+S L+
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 218 LSSG 221
SG
Sbjct: 255 PLSG 258
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 577 VLSLLSGLD--LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
VL+ L+ L+ ++ N I I P +G LT + L+L+ N L + T ++L ++ LDL
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 635 SNNKLNGKIP----HQLVELK 651
+NN+++ P +L ELK
Sbjct: 246 ANNQISNLAPLSGLTKLTELK 266
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
SLP L +L +LDVS N+LT S+ L L +++LYL N +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQI--PISLEPLFN 182
SLP L +L +LDVS N+LT S+ L L +++LYL N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 HSRLKTFYADNNELNA 198
+L D EL A
Sbjct: 150 LEKLSLANNDLTELPA 165
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
SLP L +L +LDVS N+LT S+ L L +++LYL N +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
L+ LDLS +L P +L+ +Q LN+SHN+ L + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 641 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 700
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 237 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 602 LTRIQTLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660
L+ ++ L ++ N +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 661 NNL 663
NN
Sbjct: 209 NNF 211
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
SLP L +L +LDVS N+LT S+ L L +++LYL N +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
SLP L +L +LDVS N+LT S+ L L +++LYL N +
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 138
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
G+ L L+ LD+S N+L + L +Q L L N+L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 635 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
SLP L +L +LDVS N+LT S+ L L +++LYL N +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 567 KNIVYIYQGKV--LSLLSGLDLS-CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF 623
K + YI +G LS L L+L+ CN + IP + L ++ L+LS N L + P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 624 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
L H++ L + +++ + L++L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
+++ L L HN + + + S L + L L NNKL+ ++P L +LK L+V + NN
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 663 LS 664
++
Sbjct: 276 IT 277
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 586 LSCNKL-IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP 644
+ C+ L + +P +I T + L+L +ND+ L F L+H+ +L L NNK++
Sbjct: 38 VQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 645 HQLVELKTLEVFSVAYNNLSGEIP 668
L+ L+ ++ N+L EIP
Sbjct: 96 KAFSPLRKLQKLYISKNHLV-EIP 118
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630
+ ++G S + DLS +K+ + + T ++ L L+ N++ + + F L H++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLK 326
Query: 631 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIP--EWTAQFATFNESSYEGNTF 687
L L N+L +P + + L +L+ + N P ++ +++ N +G+
Sbjct: 327 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK 385
Query: 688 LCGLPLPICRSPATMSEASI 707
G P+ RS + AS+
Sbjct: 386 CSGSGKPV-RSIICPTSASL 404
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIP 174
L + N LR LP + L L +L S N L + +L +++L L NN Q
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQS 523
Query: 175 ISLEPLFNHSRLKTFYADNNELNAE 199
+++PL + RL N L E
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIP 174
L + N LR LP + L L +L S N L + +L +++L L NN Q
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQS 523
Query: 175 ISLEPLFNHSRLKTFYADNNELNAE 199
+++PL + RL N L E
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 582 SGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
SG + C+ K + +P G T Q L L N + L P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 582 SGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
SG + C+ K + +P G T Q L L N + L P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
HL+ L +G N +R L SL L++ N LT I S +L+ + +L+L NN
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN- 157
Query: 171 FQIPISLEPLFNHSRLKTF 189
PI P + +R+ +
Sbjct: 158 ---PIESIPSYAFNRVPSL 173
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
+L+ + GSN LR + L+ L+++SNQL S+ LTS++K++L N
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTN 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,544,970
Number of Sequences: 62578
Number of extensions: 848932
Number of successful extensions: 2681
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 600
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)