Query 041867
Match_columns 776
No_of_seqs 557 out of 4284
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.5E-60 9.7E-65 566.8 41.6 542 30-692 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.5E-56 1.4E-60 530.9 41.0 521 54-693 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.2E-42 1.8E-46 343.4 6.9 394 237-712 79-493 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.6E-40 5.7E-45 332.5 5.8 392 84-636 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.6E-40 7.9E-45 317.4 -11.2 450 83-664 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.3E-39 9.2E-44 310.1 -16.6 492 105-688 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.7E-35 1.2E-39 310.2 -4.3 501 10-681 3-506 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-33 2.8E-38 299.9 -7.8 486 35-689 3-490 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.4E-33 1.2E-37 281.8 -3.0 355 225-690 21-377 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5E-32 1.1E-36 274.8 -3.5 386 83-659 8-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.3E-27 1.4E-31 226.2 -3.3 113 594-706 265-392 (498)
12 KOG4237 Extracellular matrix p 99.9 6.9E-27 1.5E-31 225.9 -4.7 290 82-430 67-358 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.3E-20 4.9E-25 224.0 25.3 315 262-662 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.4E-19 3E-24 217.2 29.1 172 311-513 726-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 6.9E-21 1.5E-25 210.9 15.8 262 288-671 204-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.6E-19 7.8E-24 197.3 17.1 260 311-691 202-461 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.5E-23 191.1 12.4 180 287-515 180-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.4E-22 185.9 12.5 182 286-516 200-381 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.7E-23 180.2 -0.7 286 315-687 3-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-18 8.1E-23 178.4 0.2 262 309-663 22-319 (319)
21 KOG0617 Ras suppressor protein 99.7 3.3E-18 7.2E-23 146.7 -3.6 163 469-689 47-213 (264)
22 PLN03150 hypothetical protein; 99.5 4.1E-14 8.9E-19 158.4 10.7 118 580-697 419-538 (623)
23 KOG0617 Ras suppressor protein 99.5 3.4E-16 7.5E-21 134.5 -4.9 182 393-669 32-217 (264)
24 KOG0532 Leucine-rich repeat (L 99.2 8.7E-13 1.9E-17 134.9 -3.9 176 416-665 73-248 (722)
25 KOG1259 Nischarin, modulator o 99.1 1E-11 2.2E-16 117.0 1.3 131 478-667 284-415 (490)
26 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 122.0 2.5 192 2-200 143-342 (505)
27 PLN03150 hypothetical protein; 99.1 1.5E-10 3.2E-15 129.9 10.3 114 503-669 419-533 (623)
28 KOG3207 Beta-tubulin folding c 99.1 2.9E-11 6.3E-16 120.2 2.2 166 27-197 118-284 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 105.8 5.5 126 28-167 17-148 (175)
30 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.2E-15 123.6 7.5 143 469-670 154-296 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 5.5E-11 1.2E-15 108.4 2.7 85 109-196 41-125 (175)
32 KOG0532 Leucine-rich repeat (L 99.1 1.3E-11 2.8E-16 126.5 -2.1 195 284-513 74-271 (722)
33 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.3E-16 118.9 -1.5 194 80-298 90-311 (382)
34 KOG1909 Ran GTPase-activating 99.0 1.3E-11 2.8E-16 119.4 -3.6 191 105-322 87-310 (382)
35 COG4886 Leucine-rich repeat (L 99.0 5E-10 1.1E-14 120.4 7.4 38 581-620 257-294 (394)
36 PF13855 LRR_8: Leucine rich r 99.0 4.1E-10 8.9E-15 84.2 3.0 60 604-663 2-61 (61)
37 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 110.1 -0.2 129 55-197 284-412 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 7E-10 1.5E-14 82.9 3.1 61 579-639 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 116.4 0.2 86 581-669 234-323 (414)
40 KOG2120 SCF ubiquitin ligase, 98.7 4.9E-10 1.1E-14 105.9 -5.7 183 6-194 186-373 (419)
41 KOG4658 Apoptotic ATPase [Sign 98.7 3.5E-08 7.5E-13 113.3 7.7 107 29-144 544-652 (889)
42 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.5E-14 115.4 -5.4 111 576-691 184-295 (1096)
43 KOG0531 Protein phosphatase 1, 98.6 6.2E-09 1.3E-13 111.9 -1.4 218 357-664 70-290 (414)
44 KOG1859 Leucine-rich repeat pr 98.5 3.9E-09 8.5E-14 111.5 -5.5 108 80-197 185-292 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.5 2.9E-07 6.2E-12 105.9 7.5 58 578-635 769-827 (889)
46 KOG2982 Uncharacterized conser 98.3 9.2E-08 2E-12 90.8 0.2 66 259-324 197-263 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 5.4E-09 1.2E-13 99.0 -8.0 207 82-294 159-372 (419)
48 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.6E-12 88.4 2.5 189 4-198 70-263 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.4E-12 89.0 -0.3 146 105-274 87-255 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.1 4.6E-07 9.9E-12 85.0 -1.2 93 80-172 28-133 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 2.3E-07 5E-12 77.8 -3.1 109 580-692 54-163 (177)
52 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.5E-11 98.3 0.7 161 82-270 122-284 (699)
53 KOG4341 F-box protein containi 98.0 2E-07 4.2E-12 93.0 -5.6 57 309-365 400-458 (483)
54 KOG4579 Leucine-rich repeat (L 97.9 9.9E-07 2.1E-11 74.0 -1.5 104 580-686 28-134 (177)
55 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4E-10 71.4 6.1 109 80-194 40-150 (233)
56 KOG3665 ZYG-1-like serine/thre 97.9 3E-06 6.5E-11 95.0 0.2 154 29-191 121-282 (699)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 2.9E-10 54.4 2.9 36 628-664 2-37 (44)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.2E-10 54.2 3.0 36 604-640 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.4E-10 69.4 5.7 132 84-249 21-153 (233)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.4E-09 64.8 6.7 126 470-654 4-129 (129)
61 KOG4341 F-box protein containi 97.6 4.7E-06 1E-10 83.4 -3.9 89 3-92 162-252 (483)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00023 5E-09 62.7 6.7 80 80-168 33-112 (129)
63 PRK15386 type III secretion pr 97.4 0.00053 1.2E-08 70.9 8.2 32 627-661 156-187 (426)
64 PRK15386 type III secretion pr 97.3 0.00082 1.8E-08 69.6 7.9 76 414-514 48-124 (426)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.2E-09 68.8 2.0 84 80-166 63-150 (260)
66 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 62.8 3.2 110 4-120 42-153 (260)
67 KOG2123 Uncharacterized conser 96.5 6.2E-05 1.4E-09 71.3 -6.5 84 81-172 18-101 (388)
68 KOG2123 Uncharacterized conser 96.5 6.3E-05 1.4E-09 71.3 -6.5 84 109-197 18-101 (388)
69 KOG1947 Leucine rich repeat pr 96.2 0.0011 2.3E-08 73.7 -0.6 65 54-122 242-307 (482)
70 KOG1947 Leucine rich repeat pr 96.1 0.00087 1.9E-08 74.5 -1.8 16 257-272 358-373 (482)
71 TIGR00864 PCC polycystin catio 94.8 0.012 2.7E-07 73.7 1.7 75 633-712 1-75 (2740)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.5E-07 32.5 1.0 19 112-131 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3E-07 32.8 0.7 11 630-640 3-13 (22)
74 KOG4308 LRR-containing protein 92.6 0.001 2.2E-08 71.7 -11.6 38 261-298 262-303 (478)
75 KOG4308 LRR-containing protein 92.0 0.0014 3E-08 70.7 -11.5 191 7-199 89-305 (478)
76 smart00369 LRR_TYP Leucine-ric 91.9 0.11 2.4E-06 30.5 1.6 13 628-640 3-15 (26)
77 smart00370 LRR Leucine-rich re 91.9 0.11 2.4E-06 30.5 1.6 13 628-640 3-15 (26)
78 smart00370 LRR Leucine-rich re 91.2 0.17 3.7E-06 29.6 2.0 18 603-620 2-19 (26)
79 smart00369 LRR_TYP Leucine-ric 91.2 0.17 3.7E-06 29.6 2.0 18 603-620 2-19 (26)
80 KOG0473 Leucine-rich repeat pr 90.6 0.0099 2.1E-07 55.3 -5.6 83 579-664 42-124 (326)
81 PF13504 LRR_7: Leucine rich r 90.2 0.21 4.5E-06 25.9 1.4 13 335-347 2-14 (17)
82 KOG0473 Leucine-rich repeat pr 89.5 0.0097 2.1E-07 55.4 -6.6 93 591-686 30-122 (326)
83 KOG3864 Uncharacterized conser 88.7 0.085 1.9E-06 48.4 -1.1 84 31-120 102-186 (221)
84 KOG4242 Predicted myosin-I-bin 86.5 4.1 8.8E-05 42.8 9.1 19 30-48 165-183 (553)
85 PF13516 LRR_6: Leucine Rich r 84.7 0.18 4E-06 28.9 -0.8 15 110-124 2-16 (24)
86 KOG3864 Uncharacterized conser 80.6 0.34 7.3E-06 44.7 -1.2 85 394-512 101-186 (221)
87 smart00365 LRR_SD22 Leucine-ri 76.1 2.3 4.9E-05 25.0 1.8 14 627-640 2-15 (26)
88 PHA03099 epidermal growth fact 70.5 5 0.00011 33.6 3.2 32 724-755 104-135 (139)
89 smart00364 LRR_BAC Leucine-ric 66.8 4.1 8.9E-05 23.8 1.4 13 628-640 3-15 (26)
90 smart00368 LRR_RI Leucine rich 63.2 6 0.00013 23.6 1.8 13 628-640 3-15 (28)
91 KOG4242 Predicted myosin-I-bin 62.3 29 0.00063 36.8 7.4 65 335-407 215-281 (553)
92 TIGR00864 PCC polycystin catio 61.5 5.8 0.00012 51.4 2.8 33 609-641 1-33 (2740)
93 KOG3763 mRNA export factor TAP 57.6 7.9 0.00017 41.7 2.6 83 3-88 216-307 (585)
94 PF15102 TMEM154: TMEM154 prot 55.5 4.5 9.8E-05 35.2 0.4 21 728-748 67-87 (146)
95 KOG3763 mRNA export factor TAP 52.2 5.8 0.00013 42.7 0.6 35 579-613 218-254 (585)
96 PF08374 Protocadherin: Protoc 50.4 10 0.00022 35.4 1.8 25 719-743 37-61 (221)
97 PTZ00370 STEVOR; Provisional 47.8 17 0.00038 35.6 3.0 6 740-745 276-281 (296)
98 smart00367 LRR_CC Leucine-rich 42.3 27 0.00058 20.2 2.2 10 56-65 3-12 (26)
99 PTZ00046 rifin; Provisional 38.9 36 0.00078 35.0 3.8 24 728-751 322-345 (358)
100 TIGR01477 RIFIN variant surfac 38.0 39 0.00083 34.6 3.9 23 729-751 318-340 (353)
101 smart00082 LRRCT Leucine rich 35.4 18 0.0004 25.0 0.9 10 685-694 1-10 (51)
102 PF07204 Orthoreo_P10: Orthore 32.9 56 0.0012 26.0 3.1 29 719-747 41-69 (98)
103 PTZ00382 Variant-specific surf 31.7 13 0.00027 30.3 -0.5 9 725-733 71-79 (96)
104 PF04478 Mid2: Mid2 like cell 29.3 7.8 0.00017 34.0 -2.2 8 722-729 51-58 (154)
105 PF02158 Neuregulin: Neureguli 29.2 22 0.00047 36.4 0.5 36 715-750 4-40 (404)
106 PF02009 Rifin_STEVOR: Rifin/s 28.8 70 0.0015 32.4 4.0 25 721-745 259-283 (299)
107 PF06305 DUF1049: Protein of u 27.5 1.6E+02 0.0035 21.8 5.0 7 729-735 28-34 (68)
108 PRK00523 hypothetical protein; 25.0 1.5E+02 0.0032 22.6 4.0 12 740-751 23-34 (72)
109 PTZ00370 STEVOR; Provisional 24.4 70 0.0015 31.6 2.9 23 724-746 256-278 (296)
110 PRK01844 hypothetical protein; 24.2 1.5E+02 0.0033 22.5 4.0 12 740-751 22-33 (72)
111 TIGR01478 STEVOR variant surfa 24.0 71 0.0015 31.5 2.9 23 724-746 260-282 (295)
112 PF10725 DUF2517: Protein of u 23.1 1E+02 0.0022 22.3 2.7 31 728-758 15-45 (63)
113 PF04971 Lysis_S: Lysis protei 21.0 1.5E+02 0.0033 22.2 3.4 30 719-748 32-61 (68)
114 PF12191 stn_TNFRSF12A: Tumour 20.8 33 0.00071 29.0 0.0 15 738-752 97-111 (129)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-60 Score=566.79 Aligned_cols=542 Identities=32% Similarity=0.459 Sum_probs=427.3
Q ss_pred CCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCC
Q 041867 30 PSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSP 109 (776)
Q Consensus 30 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l 109 (776)
.+++.|+|++|.+.+.++. .|..+++|++|++++| .+.+.++..++..+++|++|++++|.+.+ .++. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~---~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR---GSI 139 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCcccc---ccCc---ccc
Confidence 4677888888887766655 6778888888888888 55566676666578888888888888766 4443 456
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEE
Q 041867 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189 (776)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 189 (776)
++|++|+|++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+.++ ..+..+++|++|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEE
Confidence 7788888888888777788888888888888888887766666 77888888888888888775554 456777788888
Q ss_pred EcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEcc
Q 041867 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLV 269 (776)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 269 (776)
++++|.+. +.+|..+..+++|+.|++++|.+.+.+|..+ +++++|+.|+++
T Consensus 218 ~L~~n~l~----------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~ 268 (968)
T PLN00113 218 YLGYNNLS----------------------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLY 268 (968)
T ss_pred ECcCCccC----------------------------CcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECc
Confidence 77776543 2345566677777777777777777777665 677777777777
Q ss_pred CCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCc
Q 041867 270 NDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349 (776)
Q Consensus 270 ~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 349 (776)
+|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 77777767777777777777777777777666666554 67777788877777777777777778888888888877766
Q ss_pred CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccc
Q 041867 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429 (776)
Q Consensus 350 ~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 429 (776)
+|..+. .+++|+.|++++|+ +.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 348 ~p~~l~-~~~~L~~L~Ls~n~-----------l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 348 IPKNLG-KHNNLTVLDLSTNN-----------LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred CChHHh-CCCCCcEEECCCCe-----------eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 666544 57777777744443 445667777777778888888888877777777788888888888888
Q ss_pred cCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEe
Q 041867 430 ISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLD 508 (776)
Q Consensus 430 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 508 (776)
+.+..+..+. ++.|+.+++++|.+ ++.++..+..+++|+.|++++|++.+..|..+ ..++|+.|+
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l-------------~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNL-------------QGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcc-------------cCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 7776666555 67777775555544 34566667788999999999999988777655 468999999
Q ss_pred CCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccC
Q 041867 509 LSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSC 588 (776)
Q Consensus 509 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 588 (776)
+++|++.+..|..+..++ +|+.|+|++
T Consensus 482 ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~ 508 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLS-----------------------------------------------------ELMQLKLSE 508 (968)
T ss_pred CcCCccCCccChhhhhhh-----------------------------------------------------ccCEEECcC
Confidence 999999988888776544 899999999
Q ss_pred CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 589 NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 589 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcccccCCCCCCCCC
Q 041867 669 EWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 669 ~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
.. .++.++....+.|||..|+.+
T Consensus 589 ~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 589 ST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred Cc-chhcccChhhhcCCccccCCc
Confidence 84 678888899999999999753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.5e-56 Score=530.90 Aligned_cols=521 Identities=30% Similarity=0.459 Sum_probs=467.8
Q ss_pred CCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCC
Q 041867 54 FKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNL 133 (776)
Q Consensus 54 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 133 (776)
..+++.|+++++ .+.+..+..+. .+++|++|+|++|.+.+ .+|...+..+++|++|+|++|++++..|. +.+
T Consensus 68 ~~~v~~L~L~~~--~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 68 SSRVVSIDLSGK--NISGKISSAIF-RLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CCcEEEEEecCC--CccccCChHHh-CCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 457999999999 66677777777 99999999999999987 67765566999999999999999987775 568
Q ss_pred CCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCccc
Q 041867 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQL 213 (776)
Q Consensus 134 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 213 (776)
++|++|++++|.+++.+|. .++.+++|++|++++|.+.+.++ ..+.++++|++|++++|.+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~---------------- 201 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLV---------------- 201 (968)
T ss_pred CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCc----------------
Confidence 9999999999999877887 79999999999999999886655 45788999999998877653
Q ss_pred ceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEce
Q 041867 214 SRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDIS 293 (776)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 293 (776)
+.+|..+..+++|+.|++++|.+.+.+|..+ .++++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 202 ------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 202 ------------GQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred ------------CcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 3467778889999999999999999999887 899999999999999999999999999999999999
Q ss_pred eccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccc
Q 041867 294 NNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373 (776)
Q Consensus 294 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~ 373 (776)
+|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|
T Consensus 269 ~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n---- 342 (968)
T PLN00113 269 QNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN---- 342 (968)
T ss_pred CCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCC----
Confidence 99999888888776 78999999999999999999999999999999999999977776654 6999999995554
Q ss_pred eEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcc
Q 041867 374 GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNM 452 (776)
Q Consensus 374 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~ 452 (776)
.+.+..|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..+..+. +++|+.|++++|+
T Consensus 343 -------~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 343 -------KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred -------CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 55567888999999999999999999999999999999999999999999988887766 8899999776665
Q ss_pred cCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCccccccc
Q 041867 453 LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYS 532 (776)
Q Consensus 453 l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 532 (776)
+ ++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+.
T Consensus 416 l-------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------- 473 (968)
T PLN00113 416 F-------------SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------- 473 (968)
T ss_pred e-------------eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------
Confidence 4 456778899999999999999999999998899999999999999999887776442
Q ss_pred CCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccc
Q 041867 533 NSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSH 612 (776)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 612 (776)
.++|+.|++++|++++..|..+.++++|+.|+|++
T Consensus 474 ---------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 474 ---------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred ---------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 23799999999999999999999999999999999
Q ss_pred ccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 613 NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 613 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
|.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred C
Q 041867 693 L 693 (776)
Q Consensus 693 ~ 693 (776)
.
T Consensus 589 ~ 589 (968)
T PLN00113 589 S 589 (968)
T ss_pred C
Confidence 4
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-42 Score=343.36 Aligned_cols=394 Identities=23% Similarity=0.268 Sum_probs=326.5
Q ss_pred CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316 (776)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 316 (776)
.-+.|++++|++...-+.. |.++++|+++++..|.++.+ |.......+++.|+|.+|.|+ .+.......++.|+.+|
T Consensus 79 ~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHH-HhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 3467888888887554444 47888888888888888763 333344456888899888887 44444344478889999
Q ss_pred cccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCC
Q 041867 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL 396 (776)
Q Consensus 317 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L 396 (776)
++.|.|+......|..-.++++|+|++|.|+ .+..+.|.++.+|..|.|+.|+ ++...+..|.++++|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNr-----------ittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNR-----------ITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCc-----------ccccCHHHhhhcchh
Confidence 9999888666667777788899999999988 8888888888888888855544 445667788889999
Q ss_pred CEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhc
Q 041867 397 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVD 475 (776)
Q Consensus 397 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~ 475 (776)
+.|+|..|+|....--.|.++++|+.|.+..|.+.....+.|. +.++++|+++.| +++..-.+|+.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-------------~l~~vn~g~lf 290 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-------------RLQAVNEGWLF 290 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-------------hhhhhhccccc
Confidence 9999999988855466788999999999999999888888776 888888855554 44456778899
Q ss_pred cCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867 476 GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555 (776)
Q Consensus 476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (776)
+++.|+.|++++|.|..+.+++...+++|+.|+|+.|+|+...+..|..+.
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------------- 341 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS----------------------------- 341 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999988888776644
Q ss_pred ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCcc---ccCCCCCCCEE
Q 041867 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPS---TFSNLKHVESL 632 (776)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L 632 (776)
.|++|+|++|.+..+...+|..+++|++|||++|.+...+.+ .|.+|++|+.|
T Consensus 342 ------------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 342 ------------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ------------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 899999999999988889999999999999999999887654 48899999999
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC-----------------C
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------I 695 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~-----------------~ 695 (776)
++.+|+|..+...+|..++.|+.|||.+|.|....|.+|.++ .|+.+.+.--.++|+|++. .
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~ 476 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAK 476 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeee
Confidence 999999998888899999999999999999999999998888 8999999889999999874 5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 041867 696 CRSPATMSEASIGNERD 712 (776)
Q Consensus 696 c~~~~~~~~~~~~~~~~ 712 (776)
|+.|+...+.++.+.+.
T Consensus 477 CayPe~Lad~~i~svd~ 493 (873)
T KOG4194|consen 477 CAYPEPLADQSIVSVDT 493 (873)
T ss_pred ccCCcccccceeEeech
Confidence 99999888876554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-40 Score=332.55 Aligned_cols=392 Identities=23% Similarity=0.246 Sum_probs=287.6
Q ss_pred ccEEEccCCCCCCCCCCcCCcCCCC-C-CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCC-CC
Q 041867 84 LKYLSLSYSTLGTNSSRILDRGLCS-P-VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHL-TS 160 (776)
Q Consensus 84 L~~L~L~~n~i~~~~~~~~~~~l~~-l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~ 160 (776)
-+.||.+++.+.. +....+.. + ..-+.|++++|++..+.+..|.++++|+++++.+|.++ .||. |++. .+
T Consensus 54 ~~lldcs~~~lea----~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sgh 126 (873)
T KOG4194|consen 54 TRLLDCSDRELEA----IDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGH 126 (873)
T ss_pred ceeeecCcccccc----ccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccc
Confidence 4556777776643 11112222 1 24567999999999988999999999999999999998 8997 5554 45
Q ss_pred CCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867 161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240 (776)
Q Consensus 161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 240 (776)
|+.|+|.+|.|+ ++..+.+..++.|+.|||+.|.|+..
T Consensus 127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i----------------------------------------- 164 (873)
T KOG4194|consen 127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEI----------------------------------------- 164 (873)
T ss_pred eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcc-----------------------------------------
Confidence 999999999887 55656677777777777777665422
Q ss_pred EEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867 241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320 (776)
Q Consensus 241 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 320 (776)
|..-|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .+|...+..+++|+.|++..|
T Consensus 165 ------------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 165 ------------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred ------------cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence 1111233456777777777777777778888888888888888888 677766666888888888888
Q ss_pred cCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEe
Q 041867 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYII 400 (776)
Q Consensus 321 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ 400 (776)
.|.-.....|.++++|+.|.+..|.+. .+..++|.++.++++|+|+.|+++ .....++-++++|+.|+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQ-----------AVNEGWLFGLTSLEQLD 299 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhh-----------hhhcccccccchhhhhc
Confidence 877444567888888888888888887 788888878888888885555543 45566677788888888
Q ss_pred ccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccC
Q 041867 401 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQL 480 (776)
Q Consensus 401 l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L 480 (776)
+++|.|..+.++.+...++|++|||++|+|+. ..+..|..+..|
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~------------------------------------l~~~sf~~L~~L 343 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITR------------------------------------LDEGSFRVLSQL 343 (873)
T ss_pred cchhhhheeecchhhhcccceeEecccccccc------------------------------------CChhHHHHHHHh
Confidence 88888887777777778888888888777763 445667888889
Q ss_pred CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE 560 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (776)
++|+|++|.+...-..+|..+.+|++|||++|.++..+.++-...
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f----------------------------------- 388 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF----------------------------------- 388 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh-----------------------------------
Confidence 999999999988888889999999999999998875443311110
Q ss_pred eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 636 (776)
..+++|+.|+|.+|++..+...+|.++++|++|||.+|.|..+.|.+|..+ .|++|.+..
T Consensus 389 ---------------~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 ---------------NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---------------ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 014467777777777776666777777777777777777777777777776 677666554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-40 Score=317.43 Aligned_cols=450 Identities=26% Similarity=0.399 Sum_probs=248.8
Q ss_pred CccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867 83 SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162 (776)
Q Consensus 83 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 162 (776)
.|..|.+++|.+.. +. ..+.++..|.+|++++|+++ ..|.+++.+..++.++.++|++. .+|+ .+..+.+|+
T Consensus 46 ~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLV 117 (565)
T ss_pred chhhhhhccCchhh----cc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhh
Confidence 35556666665543 22 25556666666666666665 45556666666666666666665 5555 556666666
Q ss_pred EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242 (776)
Q Consensus 163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 242 (776)
.++++.|.+. ..+ ..++.+..+..++..+|.+. ..|..+..+.++..++
T Consensus 118 ~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~-----------------------------slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 118 KLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQIS-----------------------------SLPEDMVNLSKLSKLD 166 (565)
T ss_pred hhhcccccee-ecC-chHHHHhhhhhhhccccccc-----------------------------cCchHHHHHHHHHHhh
Confidence 6666666554 112 22344444444444433332 2455555566666666
Q ss_pred cCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccC
Q 041867 243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNAL 322 (776)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 322 (776)
+.+|++....|..+ +++.|++++...|.++. .|..++.+.+|..|++..|++. .+| .+.. +..|.++.+..|.|
T Consensus 167 ~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g-cs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 167 LEGNKLKALPENHI--AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPG-CSLLKELHVGENQI 240 (565)
T ss_pred ccccchhhCCHHHH--HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCc-cHHHHHHHhcccHH
Confidence 76766663333322 35666666665555544 3445555666666666666655 444 2222 45556666666655
Q ss_pred ccCCCccC-CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEec
Q 041867 323 DGSIPSSL-GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIM 401 (776)
Q Consensus 323 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 401 (776)
. .+|... .+++++.+||+..|+++ ++|.++.. +.+|++||+|+|.++ ..|..++++ .|+.|-+
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is------------~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS------------SLPYSLGNL-HLKFLAL 304 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc------------cCCcccccc-eeeehhh
Confidence 5 333333 25566666666666665 55655552 555556654444433 345555555 5666666
Q ss_pred cCCccccCCCccc-----------------------------------------CCCCCCcEEEccccccCCCCCCCCCC
Q 041867 402 PNNHLEGPIPVEF-----------------------------------------CQLDLLQILDISDNNISGSLPSCFHP 440 (776)
Q Consensus 402 ~~n~i~~~~~~~~-----------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~ 440 (776)
.+|.+..+-.+.+ ..+.+.+.|++++-+++.++...|..
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea 384 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA 384 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence 6655432100000 01112223333333333222222221
Q ss_pred Cc---ccEEEcCCcccCcccccccCCccccccCChhhccCccCCEE-EcccccCCccchhhhcCCCCCCEEeCCCCcccC
Q 041867 441 LS---IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHL-ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG 516 (776)
Q Consensus 441 ~~---L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 516 (776)
.. .... +++.|++. .+|..+..+..+.+. .+++|.+ +..|..++.+++|..|++++|.+.
T Consensus 385 ~~~~~Vt~V-------------nfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln- 448 (565)
T KOG0472|consen 385 AKSEIVTSV-------------NFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN- 448 (565)
T ss_pred hhhcceEEE-------------ecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-
Confidence 11 2222 33444443 445544444444433 3333333 356667777777777777777665
Q ss_pred CCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh
Q 041867 517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP 596 (776)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 596 (776)
.+|..+..+. .|+.||++.|.+. .+|
T Consensus 449 ~LP~e~~~lv-----------------------------------------------------~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 449 DLPEEMGSLV-----------------------------------------------------RLQTLNLSFNRFR-MLP 474 (565)
T ss_pred hcchhhhhhh-----------------------------------------------------hhheecccccccc-cch
Confidence 4444444332 5777888888776 677
Q ss_pred hhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867 597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 597 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 664 (776)
..+..+..++.+-.++|++..+.|+.+.+|.+|.+|||.+|.+. .+|..+++|++|+.|++.||+|+
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777777777777777777777777777788888888888876 66667778888888888888877
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.3e-39 Score=310.08 Aligned_cols=492 Identities=24% Similarity=0.326 Sum_probs=370.9
Q ss_pred CCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCC
Q 041867 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184 (776)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 184 (776)
..+.-..|+.+++++|.++. +.+.+.++..|.+|++.+|++. ..|+ +++.+..++.++.++|.+. .+| .....+.
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~ 114 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELP-EQIGSLI 114 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hcc-HHHhhhh
Confidence 45666789999999999985 4556889999999999999998 8888 8999999999999999987 444 4577788
Q ss_pred CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCc
Q 041867 185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR 264 (776)
Q Consensus 185 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 264 (776)
+++.++.+.|.+. .+|+.++.+..++.++..+|++. ..|..+ ..+.++.
T Consensus 115 ~l~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~ 163 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLS 163 (565)
T ss_pred hhhhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHH
Confidence 8888888887653 35677888889999999999988 566665 5888899
Q ss_pred EEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCC
Q 041867 265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344 (776)
Q Consensus 265 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 344 (776)
.+.+.+|.+....+..+. ++.|+++|...|.++ .+|..++. +.+|..|++..|++. .+| .|.++..|+++..+.|
T Consensus 164 ~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhccc
Confidence 999999999987776666 999999999999887 88888887 889999999999998 566 7999999999999999
Q ss_pred cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEE
Q 041867 345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILD 424 (776)
Q Consensus 345 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 424 (776)
+++ .+|++....++++..||+..|+++ ..|+.+.-+.+|++||+++|.|+ ..|..++++ .|+.|-
T Consensus 239 ~i~-~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHH-hhHHHHhcccccceeeeccccccc------------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 998 999999988999999997777776 58888888999999999999999 567788999 899999
Q ss_pred ccccccCCCCCCCCCCC---cccEEE--cCCcccCccccc-ccCCccccccCChhhccCccCCEEEcccccCCccchhhh
Q 041867 425 ISDNNISGSLPSCFHPL---SIKQVH--LSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL 498 (776)
Q Consensus 425 ls~n~l~~~~~~~~~~~---~L~~L~--l~~n~l~~~~~~-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 498 (776)
+.+|++..+-.....+. -|++|. +....+...... .-......+..| ......+.+.|++++-+++......|
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVf 382 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVF 382 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHH
Confidence 99998863322222211 122221 000000000000 000000111111 12335567788888888886555555
Q ss_pred cCCC--CCCEEeCCCCcccCCCCCCCcCCccccc--ccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEec
Q 041867 499 CELN--QLQLLDLSNNNLHGPIPPCFDNTTLYES--YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574 (776)
Q Consensus 499 ~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
..-. -...++++.|++. ..|..+..+..... ....+.+. +. .. .
T Consensus 383 ea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv------------------------~~------~ 430 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV------------------------PL------E 430 (565)
T ss_pred HHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc------------------------hH------H
Confidence 4322 3678888888886 44444433221100 00000000 00 00 0
Q ss_pred cccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCC
Q 041867 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654 (776)
Q Consensus 575 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 654 (776)
...+++|..|+|++|.+. .+|..++.+..|+.||+|.|++. ..|.....+..++.+-.++|++..+.|+.+..|.+|+
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 022458999999999998 78899999999999999999998 6688888888999999999999988888899999999
Q ss_pred EEecccccCcccCCCccccccccCcccccCCCCC
Q 041867 655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 688 (776)
Q Consensus 655 ~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~ 688 (776)
+||+.+|.+. .+|..++.+++++++.+.|||+.
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999 56666899999999999999985
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.7e-35 Score=310.20 Aligned_cols=501 Identities=25% Similarity=0.288 Sum_probs=326.5
Q ss_pred EECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEc
Q 041867 10 LTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSL 89 (776)
Q Consensus 10 L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L 89 (776)
+|.+.+++. .+|.. +-.-..++.|+++.|.+. ..|-.+..+.-+|+.|++++|.+ +.+|..+. .+.+|+.|++
T Consensus 3 vd~s~~~l~-~ip~~-i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it-~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQ-ILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI---SSFPIQIT-LLSHLRQLNL 75 (1081)
T ss_pred cccccccCc-ccchh-hccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc---ccCCchhh-hHHHHhhccc
Confidence 556666654 34544 333345888899888765 33333556666799999998843 45666666 7788999999
Q ss_pred cCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCC
Q 041867 90 SYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169 (776)
Q Consensus 90 ~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n 169 (776)
+.|.|.. .| .+..++.+|+++.|.+|+++ ..|.++..+.+|+.||++.|.+. .+|. .+..++.++.+..++|
T Consensus 76 s~n~i~~----vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 76 SRNYIRS----VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN 147 (1081)
T ss_pred chhhHhh----Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc
Confidence 9998875 44 47888899999999999888 68889999999999999999987 8887 7888888888888888
Q ss_pred ccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCc
Q 041867 170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN 249 (776)
Q Consensus 170 ~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 249 (776)
..... ++... ++.+++..|.+ .+.++..+..++. .+++++|.+.
T Consensus 148 ~~~~~-----lg~~~-ik~~~l~~n~l----------------------------~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 148 EKIQR-----LGQTS-IKKLDLRLNVL----------------------------GGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred hhhhh-----hcccc-chhhhhhhhhc----------------------------ccchhcchhhhhe--eeecccchhh
Confidence 22211 11111 44454444432 2223333333333 4666666654
Q ss_pred ccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCcc
Q 041867 250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSS 329 (776)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 329 (776)
... ...++.|+.+....|++..... . .++++.++.+.|.++...+
T Consensus 192 -~~d---ls~~~~l~~l~c~rn~ls~l~~----~-------------------------g~~l~~L~a~~n~l~~~~~-- 236 (1081)
T KOG0618|consen 192 -VLD---LSNLANLEVLHCERNQLSELEI----S-------------------------GPSLTALYADHNPLTTLDV-- 236 (1081)
T ss_pred -hhh---hhhccchhhhhhhhcccceEEe----c-------------------------CcchheeeeccCcceeecc--
Confidence 111 1344444444444443332111 1 2355555555555542211
Q ss_pred CCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccC
Q 041867 330 LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP 409 (776)
Q Consensus 330 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 409 (776)
.....+|+.+++++|+++ .+|..+. .+.+|+.++..+|.+. ..|..+...++|+.|.+.+|.+. .
T Consensus 237 ~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~------------~lp~ri~~~~~L~~l~~~~nel~-y 301 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV------------ALPLRISRITSLVSLSAAYNELE-Y 301 (1081)
T ss_pred ccccccceeeecchhhhh-cchHHHH-hcccceEecccchhHH------------hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence 123355666666666666 6663333 4666666665555543 45555666666667777777666 4
Q ss_pred CCcccCCCCCCcEEEccccccCCCCCCCCC--CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc
Q 041867 410 IPVEFCQLDLLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH 487 (776)
Q Consensus 410 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 487 (776)
+|......++|+.||+..|.+...++..+. ...+..++.+.|++... ....=...+.|+.|++.+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-------------p~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-------------PSYEENNHAALQELYLAN 368 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc-------------ccccchhhHHHHHHHHhc
Confidence 455556667777777777777655554444 22355665555554311 101112356789999999
Q ss_pred ccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeec
Q 041867 488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTK 567 (776)
Q Consensus 488 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (776)
|.+++...+.+.+...|+.|+|++|++...+...+.++.
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle----------------------------------------- 407 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE----------------------------------------- 407 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchH-----------------------------------------
Confidence 999988888899999999999999999866665665543
Q ss_pred ceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCc-CCcc
Q 041867 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGK-IPHQ 646 (776)
Q Consensus 568 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 646 (776)
.|++|+||+|+++ .+|..+..++.|++|...+|++... | .+..+++|+.+|+|.|.++.. +|..
T Consensus 408 ------------~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 408 ------------ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ------------HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhh
Confidence 7899999999998 6789999999999999999999844 5 788899999999999999854 3433
Q ss_pred ccCCCCCCEEecccccCcccCCCccccccccCccc
Q 041867 647 LVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 681 (776)
Q Consensus 647 l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~ 681 (776)
.. -++|++||++||.-....-..+..+..+...+
T Consensus 473 ~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 473 LP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred CC-CcccceeeccCCcccccchhhhHHhhhhhhee
Confidence 33 38999999999985433333344444443333
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-33 Score=299.93 Aligned_cols=486 Identities=27% Similarity=0.337 Sum_probs=328.1
Q ss_pred EeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCE
Q 041867 35 LSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQE 114 (776)
Q Consensus 35 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~ 114 (776)
+|++.+.+. .+|.. +..-..++.|++..| .+.....+.+. ..-+|+.||+++|++.. .|. .+..+.+|+.
T Consensus 3 vd~s~~~l~-~ip~~-i~~~~~~~~ln~~~N--~~l~~pl~~~~-~~v~L~~l~lsnn~~~~----fp~-~it~l~~L~~ 72 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQ-ILNNEALQILNLRRN--SLLSRPLEFVE-KRVKLKSLDLSNNQISS----FPI-QITLLSHLRQ 72 (1081)
T ss_pred cccccccCc-ccchh-hccHHHHHhhhcccc--ccccCchHHhh-heeeeEEeecccccccc----CCc-hhhhHHHHhh
Confidence 455666654 45542 222333677777776 33333334444 44447777777777654 332 5556667777
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccC
Q 041867 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN 194 (776)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 194 (776)
|+++.|.|. ..|.+..++.+|+++.|.+|.+. ..|. .+..+.+|+.|+++.|.+. .+|
T Consensus 73 ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~P------------------ 130 (1081)
T KOG0618|consen 73 LNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIP------------------ 130 (1081)
T ss_pred cccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCc------------------
Confidence 777777666 45666666777777777777766 6666 6666777777777777655 222
Q ss_pred cccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCc
Q 041867 195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 274 (776)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 274 (776)
..+..++.++.++.++|.....++. ..++.+++..|.+.
T Consensus 131 -----------------------------------l~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 131 -----------------------------------LVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLG 169 (1081)
T ss_pred -----------------------------------hhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcc
Confidence 2333333444444444411111111 11556666666666
Q ss_pred CcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhh
Q 041867 275 GPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHL 354 (776)
Q Consensus 275 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 354 (776)
+.++..+..++. .+++.+|.+. ... . ..+++|+.+....|.+.... -.-++|+.|+.+.|.+. ++....
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p 238 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP 238 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc
Confidence 666655555555 6888888776 222 1 12567888888888776321 13477889999999887 333222
Q ss_pred hhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCC
Q 041867 355 AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434 (776)
Q Consensus 355 ~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 434 (776)
...+|+++++++|++. ..|+++..+.+|+.++..+|.+. ..|......++|+.|++..|.+...+
T Consensus 239 --~p~nl~~~dis~n~l~------------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip 303 (1081)
T KOG0618|consen 239 --VPLNLQYLDISHNNLS------------NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP 303 (1081)
T ss_pred --ccccceeeecchhhhh------------cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence 2458888887777655 46788889999999999999996 67777888889999999999988766
Q ss_pred CCCCCCCcccEEEcCCcccCcccccccCCccccccCChh-hccCcc-CCEEEcccccCCccchhhhcCCCCCCEEeCCCC
Q 041867 435 PSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW-VDGLSQ-LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512 (776)
Q Consensus 435 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~-~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 512 (776)
+..-....|++|++..|++. ..|+. +.-... |..|+.+.|++.......=...+.|+.|.+.+|
T Consensus 304 ~~le~~~sL~tLdL~~N~L~--------------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLP--------------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred Ccccccceeeeeeehhcccc--------------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 66555778888877777665 23332 222222 666667777766433222223456888888888
Q ss_pred cccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC
Q 041867 513 NLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI 592 (776)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 592 (776)
.+++..-..+.+ .+.|+.|+|++|++.
T Consensus 370 ~Ltd~c~p~l~~-----------------------------------------------------~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 370 HLTDSCFPVLVN-----------------------------------------------------FKHLKVLHLSYNRLN 396 (1081)
T ss_pred cccccchhhhcc-----------------------------------------------------ccceeeeeecccccc
Confidence 887655444444 348999999999999
Q ss_pred CCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccc
Q 041867 593 GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA 672 (776)
Q Consensus 593 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 672 (776)
......+.++..|++|+||+|+++.+ |.....+..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 77778899999999999999999955 688999999999999999998 777 788999999999999999853333234
Q ss_pred cccccCcccccCCCCCC
Q 041867 673 QFATFNESSYEGNTFLC 689 (776)
Q Consensus 673 ~~~~l~~~~~~~n~~~c 689 (776)
.+++|+.++++||+|.-
T Consensus 474 p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred CCcccceeeccCCcccc
Confidence 55899999999999743
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.4e-33 Score=281.79 Aligned_cols=355 Identities=28% Similarity=0.358 Sum_probs=248.7
Q ss_pred CcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCc-ccCCh
Q 041867 225 GVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR-GHIPI 303 (776)
Q Consensus 225 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~ 303 (776)
.+.+|.....++.++.|.+...++. .+|..+ +.+.+|++|.+++|++... ...++.++.|+.+++.+|++. .-+|.
T Consensus 21 g~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~ 97 (1255)
T KOG0444|consen 21 GDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPT 97 (1255)
T ss_pred CCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCc
Confidence 3567888888888888888887776 677776 7888888888888887653 345667788888888888775 34677
Q ss_pred hhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCC
Q 041867 304 EIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLS 383 (776)
Q Consensus 304 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~ 383 (776)
+++. +..|+.++++.|.+. ..|..+..-+++-+|+||+|+|. ++|..+|.+++.|-.|+||+|++.
T Consensus 98 diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe----------- 163 (1255)
T KOG0444|consen 98 DIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE----------- 163 (1255)
T ss_pred hhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-----------
Confidence 7776 677888888888887 66777777788888888888887 888888877888888887766665
Q ss_pred CCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCC
Q 041867 384 GKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSY 463 (776)
Q Consensus 384 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 463 (776)
..|..+..+..|++|++++|.+....-..+..+++|+.|.+++.+-+-
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------------------------- 211 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------------------------- 211 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------------
Confidence 567777778888888888887664444455566677777777655331
Q ss_pred ccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhc
Q 041867 464 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEI 543 (776)
Q Consensus 464 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (776)
.-+|..+.++.+|..++++.|.+. ..|..+..+++|+.|+||+|+|+.... +...
T Consensus 212 ----~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~------------------- 266 (1255)
T KOG0444|consen 212 ----DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE------------------- 266 (1255)
T ss_pred ----hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH-------------------
Confidence 134555666777777777777776 556666777777777777777653211 0000
Q ss_pred ccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-Cccc
Q 041867 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPST 622 (776)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 622 (776)
-.+|++|+||.|+++ ..|.++..++.|+.|.+.+|+++-. +|+.
T Consensus 267 ----------------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 267 ----------------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred ----------------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 125677777777776 6677777777777777777766532 5666
Q ss_pred cCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867 623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690 (776)
Q Consensus 623 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~ 690 (776)
++.+.+|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.+..+++..||.+--
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 777777777777777775 66777777777777777777776 5666666667777777777766553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5e-32 Score=274.79 Aligned_cols=386 Identities=26% Similarity=0.341 Sum_probs=238.3
Q ss_pred CccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867 83 SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162 (776)
Q Consensus 83 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 162 (776)
-.|-.|+++|.+++ ...+.+...++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+.. .+..++.|+
T Consensus 8 FVrGvDfsgNDFsg---~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LR 81 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSG---DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLR 81 (1255)
T ss_pred eeecccccCCcCCC---CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhH
Confidence 34444555555543 222224445555555555555554 44555555555555555555554 3322 344445555
Q ss_pred EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242 (776)
Q Consensus 163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 242 (776)
.+++.+|++.. .-+|..+..+..|+.||
T Consensus 82 sv~~R~N~LKn----------------------------------------------------sGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 82 SVIVRDNNLKN----------------------------------------------------SGIPTDIFRLKDLTILD 109 (1255)
T ss_pred HHhhhcccccc----------------------------------------------------CCCCchhcccccceeee
Confidence 55444444331 12456666667777777
Q ss_pred cCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccC
Q 041867 243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNAL 322 (776)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 322 (776)
+++|++. +.|..+ ....+ +-.|++|+|+|. .+|..++-.+..|-.|++++|++
T Consensus 110 LShNqL~-EvP~~L-E~AKn------------------------~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNL-EYAKN------------------------SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred cchhhhh-hcchhh-hhhcC------------------------cEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 7777765 555554 33344 444555555554 55555554455666666666666
Q ss_pred ccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEecc
Q 041867 323 DGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402 (776)
Q Consensus 323 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~ 402 (776)
. .+|+.+..+..|++|+|++|.+. .+.-.-.-.+++|+.|.+++.+-+ ...+|.++..+.+|..+|++
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT----------l~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT----------LDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------hhcCCCchhhhhhhhhcccc
Confidence 5 55666677777777777777654 222111112455666665554322 12366777777888888888
Q ss_pred CCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCE
Q 041867 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSH 482 (776)
Q Consensus 403 ~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~ 482 (776)
.|.+. ..|+.+..+++|+.|++|+|+|+.... ..+.-.+|++
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-------------------------------------~~~~W~~lEt 272 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-------------------------------------TEGEWENLET 272 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCceeeeec-------------------------------------cHHHHhhhhh
Confidence 88777 677777788888888888887763211 1233357888
Q ss_pred EEcccccCCccchhhhcCCCCCCEEeCCCCccc-CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccce
Q 041867 483 LILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEI 561 (776)
Q Consensus 483 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (776)
|+++.|+++ ..|.+++.++.|+.|.+.+|+++ +-+|..++++.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------------------------------- 316 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------------------------------- 316 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------------------------------
Confidence 888888887 56778888888888888888875 22344444433
Q ss_pred eeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 562 FEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+|+.+..++|.+. .+|+.++++..|+.|.|++|++. ..|+++.-++.|+.||+.+|+-..
T Consensus 317 ------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 317 ------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 6888888888887 88999999999999999999988 457888888999999999998764
Q ss_pred cCCccccCCCCCCEEecc
Q 041867 642 KIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 642 ~~~~~l~~l~~L~~L~l~ 659 (776)
..|.--..-++|+.-+|.
T Consensus 377 MPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 377 MPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CCCCcchhhhcceeeecc
Confidence 444322222455554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=6.3e-27 Score=226.17 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=96.0
Q ss_pred CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccc
Q 041867 594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 673 (776)
Q Consensus 594 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 673 (776)
.....|..+++|+.|+|++|+++.+.+.+|.++..+++|.|..|+|..+....|.++..|++|+|.+|+|++.-|..|..
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 34466889999999999999999998899999999999999999998777788888999999999999999988888888
Q ss_pred ccccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCC
Q 041867 674 FATFNESSYEGNTFLCGLPLP---------------ICRSPATMSEAS 706 (776)
Q Consensus 674 ~~~l~~~~~~~n~~~c~~~~~---------------~c~~~~~~~~~~ 706 (776)
+..+..+.+-+|||.|+|.+. .|..|....+.+
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~ 392 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP 392 (498)
T ss_pred cceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc
Confidence 888888999999999999763 588777665543
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=6.9e-27 Score=225.90 Aligned_cols=290 Identities=20% Similarity=0.193 Sum_probs=173.9
Q ss_pred CCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCC-CcCcccCCcccccCCCC
Q 041867 82 PSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSS-NQLTGSISSSPLIHLTS 160 (776)
Q Consensus 82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~ 160 (776)
+.-..++|..|+|+. +|+.+|+.+++|+.||||+|.|+.+.|++|.++++|..|-+-+ |+|+ .+|.+.|.++.+
T Consensus 67 ~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 467889999999985 9999999999999999999999999999999999988776555 9998 999999999999
Q ss_pred CCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867 161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240 (776)
Q Consensus 161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 240 (776)
|+.|.+..|++. -+....+..++++..|.+..|.+...... .+..+..++.
T Consensus 142 lqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~----------------------------tf~~l~~i~t 192 (498)
T KOG4237|consen 142 LQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKG----------------------------TFQGLAAIKT 192 (498)
T ss_pred HHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccc----------------------------cccchhccch
Confidence 999999999987 56667889999999999888876533221 2223344444
Q ss_pred EEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867 241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320 (776)
Q Consensus 241 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 320 (776)
+.+..|.+... .+++.+.... ...+..+++........+.+.++...-+..+......+..--.+.+
T Consensus 193 lhlA~np~icd------CnL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d 259 (498)
T KOG4237|consen 193 LHLAQNPFICD------CNLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED 259 (498)
T ss_pred HhhhcCccccc------cccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence 55544432100 1111111100 0111122222222223333333332222222111111111111111
Q ss_pred cCccCCC-ccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEE
Q 041867 321 ALDGSIP-SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYI 399 (776)
Q Consensus 321 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L 399 (776)
...+.-| ..|..+++|+.|++++|+++ .+....|.+...+++|.|..|++. ......|.++..|+.|
T Consensus 260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~-----------~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 260 FPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLE-----------FVSSGMFQGLSGLKTL 327 (498)
T ss_pred CcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHH-----------HHHHHhhhccccceee
Confidence 1222222 24556666666666666665 555566666666666664444432 2334455666666666
Q ss_pred eccCCccccCCCcccCCCCCCcEEEcccccc
Q 041867 400 IMPNNHLEGPIPVEFCQLDLLQILDISDNNI 430 (776)
Q Consensus 400 ~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 430 (776)
+|.+|+|+...|.+|..+.+|.+|++-.|++
T Consensus 328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eecCCeeEEEecccccccceeeeeehccCcc
Confidence 6666666666666666666666666665554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.3e-20 Score=223.96 Aligned_cols=315 Identities=21% Similarity=0.203 Sum_probs=162.7
Q ss_pred CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEc
Q 041867 262 KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDL 341 (776)
Q Consensus 262 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 341 (776)
+|+.|.+.++.+... |..+ ...+|+.|++++|.+. .++..... +++|+.++++++.....+| .+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLWDGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-cccccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 344444444443332 2222 2344445555544443 33333322 4444555554443222333 2444444555555
Q ss_pred cCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCc
Q 041867 342 SNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421 (776)
Q Consensus 342 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 421 (776)
++|.....+|..+. .+++|+.|++++|... ..+|..+ ++++|+.|++++|......|.. .++|+
T Consensus 665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L-----------~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENL-----------EILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cCCCCccccchhhh-ccCCCCEEeCCCCCCc-----------CccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 44433334443332 3444444444333211 1222222 3445555555554333222221 23444
Q ss_pred EEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC
Q 041867 422 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501 (776)
Q Consensus 422 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 501 (776)
.|++++|.+.. .|..+...+|++|.+.++.... +. +.+....+..+...++|+.|++++|......|..+.++
T Consensus 729 ~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~-----l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L 801 (1153)
T PLN03210 729 WLDLDETAIEE-FPSNLRLENLDELILCEMKSEK-----LW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801 (1153)
T ss_pred eeecCCCcccc-ccccccccccccccccccchhh-----cc-ccccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence 55555554432 2222233444444443322110 00 01111222223345678888888887666677778888
Q ss_pred CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecccccccc
Q 041867 502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLL 581 (776)
Q Consensus 502 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 581 (776)
++|+.|++++|...+.+|... . +++|
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~~-~-----------------------------------------------------L~sL 827 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTGI-N-----------------------------------------------------LESL 827 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCCC-C-----------------------------------------------------cccc
Confidence 888888888775443444322 1 3478
Q ss_pred ceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccc
Q 041867 582 SGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661 (776)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 661 (776)
+.|++++|......|.. .++|+.|+|++|.++. .|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 88888887655444443 3578888888888874 5677888888888888885444456777778888888888887
Q ss_pred c
Q 041867 662 N 662 (776)
Q Consensus 662 ~ 662 (776)
.
T Consensus 904 ~ 904 (1153)
T PLN03210 904 G 904 (1153)
T ss_pred c
Confidence 4
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.4e-19 Score=217.21 Aligned_cols=172 Identities=23% Similarity=0.340 Sum_probs=108.4
Q ss_pred ccceeecccccCccCCCccCCCCCCCCEEEccCCcCC------CcCchhhhhcCCCCcEEEccCccccceEecCCCcCCC
Q 041867 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT------GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~ 384 (776)
+|+.|++++|.+. .+|..+ .+++|+.|++.++... ..++...+..+++|+.|++++|. ...
T Consensus 726 nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------~l~ 792 (1153)
T PLN03210 726 NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------SLV 792 (1153)
T ss_pred CcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------Ccc
Confidence 4555555555544 333332 3455555555443211 01122222234677777755443 334
Q ss_pred CCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCc
Q 041867 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYN 464 (776)
Q Consensus 385 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n 464 (776)
.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......+.. +.++++|++++|.+.
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~---------- 859 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE---------- 859 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc----------
Confidence 567778888888888888875444556554 6788888888887654443332 457888877776664
Q ss_pred cccccCChhhccCccCCEEEcccc-cCCccchhhhcCCCCCCEEeCCCCc
Q 041867 465 RLNGSIPDWVDGLSQLSHLILGHN-NLEGEVLVQLCELNQLQLLDLSNNN 513 (776)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 513 (776)
.+|.++..+++|+.|++++| ++. ..+..+..++.|+.+++++|.
T Consensus 860 ----~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 ----EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ----cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 56778888999999999885 455 455667788889999998885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.9e-21 Score=210.91 Aligned_cols=262 Identities=26% Similarity=0.305 Sum_probs=152.8
Q ss_pred CEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEcc
Q 041867 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS 367 (776)
Q Consensus 288 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 367 (776)
..|+++.+.++ .+|..+. ++|+.|++..|+++. +|. .+++|++|++++|+++ .+|. ..++|+.|+++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls 270 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF 270 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeecc
Confidence 34555555554 4444432 245555555555552 332 1355666666666665 5553 13456666655
Q ss_pred CccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEE
Q 041867 368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH 447 (776)
Q Consensus 368 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ 447 (776)
+|.+. .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++.+... .+..|+.|+
T Consensus 271 ~N~L~------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~ 328 (788)
T PRK15387 271 SNPLT------------HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLW 328 (788)
T ss_pred CCchh------------hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCC---Ccccccccc
Confidence 44433 12221 1345566666666653 232 23556666666666664322 133455565
Q ss_pred cCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcc
Q 041867 448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527 (776)
Q Consensus 448 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 527 (776)
+++|++. .+|.. ..+|+.|+|++|++++. |.. .++|+.|++++|++.. +|..
T Consensus 329 Ls~N~L~--------------~LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l------ 380 (788)
T PRK15387 329 AYNNQLT--------------SLPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL------ 380 (788)
T ss_pred cccCccc--------------ccccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc------
Confidence 5555443 12211 13677888888877753 221 3567777888887764 2321
Q ss_pred cccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCe
Q 041867 528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQT 607 (776)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 607 (776)
+++|+.|++++|++++ +|.. .++|+.
T Consensus 381 --------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~ 406 (788)
T PRK15387 381 --------------------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKE 406 (788)
T ss_pred --------------------------------------------------ccccceEEecCCcccC-CCCc---ccCCCE
Confidence 1257788888888874 4432 257888
Q ss_pred eecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcc
Q 041867 608 LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 671 (776)
Q Consensus 608 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 671 (776)
|++++|+++++ |.. ..+|+.|++++|+++ .+|+.+..+++|+.|++++|++++..|..+
T Consensus 407 LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 407 LMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88888888764 433 246778888888887 677778888888888888888887666644
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.6e-19 Score=197.34 Aligned_cols=260 Identities=26% Similarity=0.294 Sum_probs=199.6
Q ss_pred ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~ 390 (776)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|..
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt------------sLP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT------------SLPVL- 260 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC------------cccCc-
Confidence 4668899999998 6777665 48999999999998 7885 3689999997777654 23432
Q ss_pred cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
.++|+.|++++|.+.. +|.. ..+|+.|++++|++...+. .+++|+.|++++|++.+ +
T Consensus 261 --p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--------------L 317 (788)
T PRK15387 261 --PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--------------L 317 (788)
T ss_pred --ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc--------------C
Confidence 3689999999999884 4432 3578899999999986543 25789999888887762 2
Q ss_pred ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550 (776)
Q Consensus 471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (776)
|.. ..+|+.|++++|.+++. |. ...+|+.|++++|++++. |..
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~L-P~l----------------------------- 360 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASL-PTL----------------------------- 360 (788)
T ss_pred CCC---cccccccccccCccccc-cc---cccccceEecCCCccCCC-CCC-----------------------------
Confidence 221 24688899999999853 32 125799999999999853 321
Q ss_pred CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 630 (776)
+++|+.|++++|++.+ +|.. .++|+.|++++|+++++ |.. .++|+
T Consensus 361 ---------------------------p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~ 405 (788)
T PRK15387 361 ---------------------------PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PVL---PSELK 405 (788)
T ss_pred ---------------------------Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CCc---ccCCC
Confidence 1268889999999985 5543 35799999999999965 333 36899
Q ss_pred EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCC
Q 041867 631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL 691 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~ 691 (776)
.|++++|+++. +|..+ .+|+.|++++|+|+ .+|..+..+..+..+++++|++.+..
T Consensus 406 ~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 406 ELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred EEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 99999999984 66543 46889999999999 67888889999999999999987543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.5e-18 Score=191.08 Aligned_cols=180 Identities=27% Similarity=0.374 Sum_probs=89.9
Q ss_pred cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL 366 (776)
Q Consensus 287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 366 (776)
...|+++++.++ .+|..+. +.++.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 344555555554 3443332 24555566666555 3343332 35666666666665 5555432 25666665
Q ss_pred cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEE
Q 041867 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 446 (776)
Q Consensus 367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 446 (776)
++|.+. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|++...+.. + +.+|+.|
T Consensus 249 s~N~L~------------~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l-p~sL~~L 309 (754)
T PRK15370 249 SINRIT------------ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH-L-PSGITHL 309 (754)
T ss_pred cCCccC------------cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc-c-hhhHHHH
Confidence 444433 2333332 356666666666663 344332 3566666666666543221 1 2344555
Q ss_pred EcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCccc
Q 041867 447 HLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515 (776)
Q Consensus 447 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 515 (776)
++++|.+. .+|..+ .++|+.|++++|.++. .|..+. ++|+.|++++|++.
T Consensus 310 ~Ls~N~Lt--------------~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 310 NVQSNSLT--------------ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred HhcCCccc--------------cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 44444433 122211 1456666666666664 233332 46666666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.6e-17 Score=185.90 Aligned_cols=182 Identities=26% Similarity=0.410 Sum_probs=90.7
Q ss_pred CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 365 (776)
.++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence 3444444444444 3333322 24555555555544 2333222 24555555555555 5554432 2455555
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 445 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~ 445 (776)
+++|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+...+... +.+|+.
T Consensus 269 Ls~N~L~------------~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~ 329 (754)
T PRK15370 269 LFHNKIS------------CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKT 329 (754)
T ss_pred CcCCccC------------ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc--ccccee
Confidence 4444332 1233222 355666666665553 232221 35566666666665432211 245666
Q ss_pred EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC
Q 041867 446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG 516 (776)
Q Consensus 446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 516 (776)
|++++|.++ .+|..+ .++|+.|++++|+++. .|..+ .++|+.|++++|+++.
T Consensus 330 L~Ls~N~Lt--------------~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 330 LEAGENALT--------------SLPASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ccccCCccc--------------cCChhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence 655555443 123222 2577788888887763 34433 2577888888887764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.2e-18 Score=180.18 Aligned_cols=286 Identities=22% Similarity=0.219 Sum_probs=146.3
Q ss_pred eecccccCc-cCCCccCCCCCCCCEEEccCCcCCCc----CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcc
Q 041867 315 FNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRW 389 (776)
Q Consensus 315 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~ 389 (776)
|++..+.+. ......+..+.+|+.|+++++.+++. ++... ...+++++++++++.+.. ........+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~ 76 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGR-----IPRGLQSLLQG 76 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCC-----cchHHHHHHHH
Confidence 455555554 22233445566677777777776422 22222 234567777765554321 00000112334
Q ss_pred ccCCCCCCEEeccCCccccCCCcccCCCCC---CcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccc
Q 041867 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDL---LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRL 466 (776)
Q Consensus 390 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l 466 (776)
+..+++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+......
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~------------------------------ 126 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR------------------------------ 126 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH------------------------------
Confidence 555666667777666665444444433333 66666666655421000
Q ss_pred cccCChhhccC-ccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhh
Q 041867 467 NGSIPDWVDGL-SQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQF 541 (776)
Q Consensus 467 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (776)
.+...+..+ ++|+.|++++|.+++. ....+..+++|++|++++|.+.+.....+....
T Consensus 127 --~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l--------------- 189 (319)
T cd00116 127 --LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL--------------- 189 (319)
T ss_pred --HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH---------------
Confidence 112233444 5666666666666622 233455556667777766665531110000000
Q ss_pred hcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----ChhhhccCccCCeeecccccccc
Q 041867 542 EIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIGNLTRIQTLNLSHNDLIG 617 (776)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 617 (776)
...++|++|++++|.+.+. ++..+..+++|++|++++|.+++
T Consensus 190 ----------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 190 ----------------------------------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ----------------------------------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 0012566777777766532 23345556677777777777664
Q ss_pred cCccccC-----CCCCCCEEECcCCccCC----cCCccccCCCCCCEEecccccCccc----CCCccccc-cccCccccc
Q 041867 618 LIPSTFS-----NLKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE----IPEWTAQF-ATFNESSYE 683 (776)
Q Consensus 618 ~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~----~p~~~~~~-~~l~~~~~~ 683 (776)
.....+. ..+.|++|++++|.++. .+.+.+..+++|+.+++++|+++.. ....+... ..++.+++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 3222221 23677777777777751 2234445556777777777777632 22223333 456666666
Q ss_pred CCCC
Q 041867 684 GNTF 687 (776)
Q Consensus 684 ~n~~ 687 (776)
+|||
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 6665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=3.8e-18 Score=178.39 Aligned_cols=262 Identities=26% Similarity=0.268 Sum_probs=143.0
Q ss_pred CcccceeecccccCcc----CCCccCCCCCCCCEEEccCCcCCCcCch------hhhhcCCCCcEEEccCccccceEecC
Q 041867 309 LPSLYLFNNSMNALDG----SIPSSLGNMKFLQILDLSNNHLTGEIPE------HLAVGCVNLQSLALSNNNLQEGLYLN 378 (776)
Q Consensus 309 l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~~L~~L~ls~n~l~~~l~l~ 378 (776)
++.|+.++++++.++. .++..+...+++++++++++.+. ..+. ..+..+++|+.|++++|.+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------ 94 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKGCGLQELDLSDNALG------ 94 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhcCceeEEEccCCCCC------
Confidence 3445555555555432 12333444555666666666554 1111 12234567777775555442
Q ss_pred CCcCCCCCCccccCCC---CCCEEeccCCccccC----CCcccCCC-CCCcEEEccccccCCCCCCCCCCCcccEEEcCC
Q 041867 379 NNSLSGKIPRWLGNLT---WLQYIIMPNNHLEGP----IPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 450 (776)
Q Consensus 379 ~n~l~~~~~~~~~~l~---~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 450 (776)
+..+..+..+. +|++|++++|.+.+. +...+..+ ++|+.|++++|.+++....
T Consensus 95 -----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------- 155 (319)
T cd00116 95 -----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-------------- 155 (319)
T ss_pred -----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--------------
Confidence 22333333333 377788877776632 22234455 6777777777766531110
Q ss_pred cccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCc
Q 041867 451 NMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 526 (776)
Q Consensus 451 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 526 (776)
..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+.....+....
T Consensus 156 ------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 156 ------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred ------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 1233455566677777777766632 223344556777777777766532221111100
Q ss_pred ccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc-----c
Q 041867 527 LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG-----N 601 (776)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~ 601 (776)
..+++|++|++++|.+++.....+. .
T Consensus 218 -------------------------------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 218 -------------------------------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred -------------------------------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 1134677777777777643332222 2
Q ss_pred CccCCeeeccccccccc----CccccCCCCCCCEEECcCCccCCc----CCccccCC-CCCCEEecccccC
Q 041867 602 LTRIQTLNLSHNDLIGL----IPSTFSNLKHVESLDLSNNKLNGK----IPHQLVEL-KTLEVFSVAYNNL 663 (776)
Q Consensus 602 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l-~~L~~L~l~~N~l 663 (776)
.+.|+.|++++|.+++. ....+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 36788888888877622 234455667888888888888744 33444444 6788888888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.3e-18 Score=146.75 Aligned_cols=163 Identities=26% Similarity=0.427 Sum_probs=131.4
Q ss_pred cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---------------------- 102 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---------------------- 102 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc----------------------
Confidence 45555778888999999999888 56778888999999999988886 6777777654
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 627 (776)
.|+.|||++|++. ...|..|..++.|+.|+|+.|.+. ++|...++++
T Consensus 103 -------------------------------~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt 150 (264)
T KOG0617|consen 103 -------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT 150 (264)
T ss_pred -------------------------------hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc
Confidence 7888999999887 357888999999999999999997 6677889999
Q ss_pred CCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccccccc---CcccccCCCCCC
Q 041867 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF---NESSYEGNTFLC 689 (776)
Q Consensus 628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l---~~~~~~~n~~~c 689 (776)
+|+.|.+..|.+. .+|..++.++.|+.|.+++|+++...|+ ++.+.-. .....+.|||.-
T Consensus 151 ~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 151 NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 9999999999997 7888899999999999999999965555 5554332 224467788754
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=4.1e-14 Score=158.38 Aligned_cols=118 Identities=35% Similarity=0.585 Sum_probs=107.9
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccc-cccCcccccCCCCCCCCCC-CCCC
Q 041867 660 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR 697 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~-~~c~ 697 (776)
+|+++|.+|..+... ..+..+++.+|+..|++|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876653 4567788999999999763 4564
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.4e-16 Score=134.48 Aligned_cols=182 Identities=29% Similarity=0.503 Sum_probs=133.1
Q ss_pred CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
+.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. ..|.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------------------------~lp~ 73 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------------------------ELPT 73 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------------------------hcCh
Confidence 444555555555555 33334555555555555555554 5566
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
.+..++.|+.|+++-|++. ..|..|..+|.|+.||++.|++.+ ..|..|..+
T Consensus 74 ~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m-------------------------- 126 (264)
T KOG0617|consen 74 SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM-------------------------- 126 (264)
T ss_pred hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHH--------------------------
Confidence 6777888888888888877 677888888888888888888763 345555443
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 631 (776)
..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.++.|++
T Consensus 127 ---------------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 127 ---------------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred ---------------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 36888999999998 88889999999999999999998 45788999999999
Q ss_pred EECcCCccCCcCCccccCCC---CCCEEecccccCcccCCC
Q 041867 632 LDLSNNKLNGKIPHQLVELK---TLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 632 L~Ls~N~l~~~~~~~l~~l~---~L~~L~l~~N~l~~~~p~ 669 (776)
|++.+|+++ .+|..++.+. +=+.+.+.+|++...+.+
T Consensus 178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 999999998 6666666543 224566778888755544
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=8.7e-13 Score=134.90 Aligned_cols=176 Identities=30% Similarity=0.443 Sum_probs=141.8
Q ss_pred CCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867 416 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL 495 (776)
Q Consensus 416 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 495 (776)
.+.--...|++.|++..++...-.+..|+.+.+..|.+. .+|..+..+..|+.++|+.|+++ ..|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--------------~ip~~i~~L~~lt~l~ls~NqlS-~lp 137 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--------------TIPEAICNLEALTFLDLSSNQLS-HLP 137 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--------------ecchhhhhhhHHHHhhhccchhh-cCC
Confidence 445556788888988865555444677788877777665 78888899999999999999988 566
Q ss_pred hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867 496 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575 (776)
Q Consensus 496 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (776)
..++.|+ |+.|-+++|+++ .+|..++.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~--------------------------------------------------- 164 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGL--------------------------------------------------- 164 (722)
T ss_pred hhhhcCc-ceeEEEecCccc-cCCccccc---------------------------------------------------
Confidence 6778777 899999999987 44444432
Q ss_pred ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655 (776)
Q Consensus 576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 655 (776)
.+.|..||.+.|.+. .+|..+.++.+|+.|++..|++..++++ +..| .|..||+|.|+++ .+|-.|.+|..|++
T Consensus 165 --~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 165 --LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred --chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccCcee-ecchhhhhhhhhee
Confidence 237889999999998 6778899999999999999999976544 4444 6889999999998 88999999999999
Q ss_pred EecccccCcc
Q 041867 656 FSVAYNNLSG 665 (776)
Q Consensus 656 L~l~~N~l~~ 665 (776)
|-|.+|++..
T Consensus 239 l~LenNPLqS 248 (722)
T KOG0532|consen 239 LQLENNPLQS 248 (722)
T ss_pred eeeccCCCCC
Confidence 9999999984
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1e-11 Score=117.03 Aligned_cols=131 Identities=28% Similarity=0.267 Sum_probs=85.7
Q ss_pred ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
+.|++++|++|.|+.+ ..+..-.|.++.|++|+|.|..+.. ++
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La---------------------------------- 326 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LA---------------------------------- 326 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hh----------------------------------
Confidence 5677778888877733 3455566777778887777763322 11
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
.+++|+.||||+|.++. +...-..+-+.+.|.|+.|.|.++ ..+..+-+|..||+++|
T Consensus 327 -------------------~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 327 -------------------ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred -------------------hcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence 13467777777777763 334444566777777777777654 55667777777777777
Q ss_pred ccCCcCC-ccccCCCCCCEEecccccCcccC
Q 041867 638 KLNGKIP-HQLVELKTLEVFSVAYNNLSGEI 667 (776)
Q Consensus 638 ~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~ 667 (776)
+|..... ..++++|-|+.+.+.+||+.+.+
T Consensus 385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 385 QIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred chhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7763321 35667777777777777777533
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.6e-11 Score=122.01 Aligned_cols=192 Identities=26% Similarity=0.242 Sum_probs=127.8
Q ss_pred CCCCCCcEEECCCCCCCCcc-chhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhc
Q 041867 2 HNFTNLEYLTLHGSSLHISL-LQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISES 80 (776)
Q Consensus 2 ~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~ 80 (776)
..|++++.||||.|=+..-. ...+...+|+|+.|+|+.|.+........-..+++|+.|.++.|.++ -.....+...
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls--~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS--WKDVQWILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC--HHHHHHHHHh
Confidence 35788888888888665432 22335678888888888888753333322335788888888888443 2222333337
Q ss_pred CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccccc-CccccCCCCCCEEeCCCCcCcccCCccc-----
Q 041867 81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSL-PWCMTNLTSLRILDVSSNQLTGSISSSP----- 154 (776)
Q Consensus 81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~----- 154 (776)
+|+|+.|+|.+|.... +......-++.|+.|||++|.+.... ....+.++.|+.|+++.+++. ++....
T Consensus 221 fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~ 295 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLD 295 (505)
T ss_pred CCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc-hhcCCCccchh
Confidence 8888888888885211 22234455677888899888876432 244667888888888888887 432212
Q ss_pred -ccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccc
Q 041867 155 -LIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEI 200 (776)
Q Consensus 155 -~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 200 (776)
...+++|++|++..|++...-....+..+++|+.|.+..|.+..+.
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 3567888888888888864444455666778888888777776543
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1.5e-10 Score=129.92 Aligned_cols=114 Identities=32% Similarity=0.493 Sum_probs=102.1
Q ss_pred CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccc
Q 041867 503 QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLS 582 (776)
Q Consensus 503 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 582 (776)
.++.|+|++|.+.+.+|..+..++ +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 377899999999988888776644 899
Q ss_pred eEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCC-CCCCEEecccc
Q 041867 583 GLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN 661 (776)
Q Consensus 583 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N 661 (776)
.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.|+|++|++++.+|..+..+ .++..+++++|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 57789999999
Q ss_pred cCcccCCC
Q 041867 662 NLSGEIPE 669 (776)
Q Consensus 662 ~l~~~~p~ 669 (776)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87765543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.9e-11 Score=120.20 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=110.8
Q ss_pred CCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867 27 SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106 (776)
Q Consensus 27 ~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 106 (776)
+++++|+...|.++.+...........|++++.|+|+.|-+.-...... +.+.+|+|+.|+++.|.+.. -.....-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNls~Nrl~~---~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNLSSNRLSN---FISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-HHHhcccchhcccccccccC---Cccccch
Confidence 4678888888888877522111245568899999999884332233333 34489999999999998865 2222222
Q ss_pred CCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCC
Q 041867 107 CSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSR 185 (776)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 185 (776)
..+++|+.|.|+.|+++-. +......+|+|+.|+|..|... .+......-+..|+.|||++|++...........++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 3567889999999988732 2334457889999999988532 2333345667788999999888764333344667788
Q ss_pred CcEEEcccCccc
Q 041867 186 LKTFYADNNELN 197 (776)
Q Consensus 186 L~~L~l~~n~~~ 197 (776)
|+.|+++.+.+.
T Consensus 273 L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 273 LNQLNLSSTGIA 284 (505)
T ss_pred hhhhhccccCcc
Confidence 888887777664
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.4e-10 Score=105.77 Aligned_cols=126 Identities=24% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCCCCCEEeCCCCcCccccCCCcCC-CCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867 28 IFPSLKNLSISYCEVNGVVHGQGFP-HFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106 (776)
Q Consensus 28 ~~~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 106 (776)
+..+++.|+|++|.|.. +. .+. .+.+|+.|++++|.|. . .+.+. .+++|++|++++|.|+. +.. .+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie--~L~~~l~~L~~L~Ls~N~I~--~--l~~l~-~L~~L~~L~L~~N~I~~----i~~-~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE--NLGATLDKLEVLDLSNNQIT--K--LEGLP-GLPRLKTLDLSNNRISS----ISE-GL 83 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S------TT-----TT--EEE--SS---S-----CH-HH
T ss_pred ccccccccccccccccc-cc--chhhhhcCCCEEECCCCCCc--c--ccCcc-ChhhhhhcccCCCCCCc----ccc-ch
Confidence 34445556666555542 22 233 3455555666655332 1 11223 45566666666666543 221 22
Q ss_pred -CCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCc---ccccCCCCCCEEecc
Q 041867 107 -CSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISS---SPLIHLTSIEKLYLS 167 (776)
Q Consensus 107 -~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~ 167 (776)
..+++|++|++++|+|... .-..+..+++|++|++.+|.++ .-+. ..+..+|+|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 2355666666666665532 1234556666666666666665 2222 135567777777643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2e-10 Score=123.56 Aligned_cols=143 Identities=36% Similarity=0.488 Sum_probs=108.2
Q ss_pred cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
.+|..+..+++|+.|++++|++.... ......++|+.|++++|++..+.+.. ..
T Consensus 154 ~l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l~~~~-~~------------------------ 207 (394)
T COG4886 154 SLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPPEI-EL------------------------ 207 (394)
T ss_pred hhhhhhhccccccccccCCchhhhhh-hhhhhhhhhhheeccCCccccCchhh-hh------------------------
Confidence 33455778888999999999888543 33446788999999999887544321 10
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+..|++|++++|.+. ..+..+..++++..|.+.+|++... +..+..+++
T Consensus 208 -----------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~ 256 (394)
T COG4886 208 -----------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSN 256 (394)
T ss_pred -----------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccc
Confidence 235888999999654 5667788889999999999988753 567888888
Q ss_pred CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCc
Q 041867 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 670 (776)
++.|++++|+++...+ +..+.+++.|++++|.++...|..
T Consensus 257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 9999999999985444 788899999999999988766653
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=5.5e-11 Score=108.36 Aligned_cols=85 Identities=29% Similarity=0.402 Sum_probs=22.0
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcE
Q 041867 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT 188 (776)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 188 (776)
+.+|+.|+|++|.|+.. +.+..++.|++|++++|.++ .+..+....+++|++|++++|.+...-....+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 34444444444444432 22444444444444444444 3332111234444444444444443223333444455555
Q ss_pred EEcccCcc
Q 041867 189 FYADNNEL 196 (776)
Q Consensus 189 L~l~~n~~ 196 (776)
|++.+|++
T Consensus 118 L~L~~NPv 125 (175)
T PF14580_consen 118 LSLEGNPV 125 (175)
T ss_dssp EE-TT-GG
T ss_pred eeccCCcc
Confidence 55554444
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=1.3e-11 Score=126.47 Aligned_cols=195 Identities=26% Similarity=0.376 Sum_probs=161.2
Q ss_pred CCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867 284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363 (776)
Q Consensus 284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 363 (776)
+.--...|++.|++. .+|..++. +..|+.+.+..|.+. .+|..+..+..|+.+||+.|+++ .+|..++ .--|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 344567899999998 88888776 678999999999998 77899999999999999999999 9999887 335899
Q ss_pred EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867 364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 443 (776)
Q Consensus 364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 443 (776)
|-+++|+++ .+|..++.+..|..||.+.|.+. ..|..++++.+|+.|.++.|.+...++... ...|
T Consensus 148 li~sNNkl~------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 148 LIVSNNKLT------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL 213 (722)
T ss_pred EEEecCccc------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence 997777765 68888899999999999999998 677889999999999999999986655544 6778
Q ss_pred cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC---CCCCEEeCCCCc
Q 041867 444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL---NQLQLLDLSNNN 513 (776)
Q Consensus 444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~ 513 (776)
..|+++.|++. .+|-.|..+..|++|-|.+|.+.. .|..++.. .-.++|+..-++
T Consensus 214 i~lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCcee--------------ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 88977777775 788999999999999999999984 44445433 234667776663
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.5e-11 Score=118.88 Aligned_cols=194 Identities=21% Similarity=0.227 Sum_probs=111.3
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccC-------------ccccCCCCCCEEeCCCCcC
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLP-------------WCMTNLTSLRILDVSSNQL 146 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l 146 (776)
.+|+|++|+||.|-+...+..-...-+.++..|++|.|.+|.+...-. .-.+.-+.|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 456677777777666554433333344556667777777766652111 1123345677777777766
Q ss_pred cccCCc----ccccCCCCCCEEeccCCcccc--c-cCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEecc
Q 041867 147 TGSISS----SPLIHLTSIEKLYLSNNHFQI--P-ISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLS 219 (776)
Q Consensus 147 ~~~i~~----~~~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 219 (776)
. ..+. ..|...+.|+.+.+..|.|.. . .-...+..+++|+.|+|..|.++.....
T Consensus 170 e-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~----------------- 231 (382)
T KOG1909|consen 170 E-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV----------------- 231 (382)
T ss_pred c-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-----------------
Confidence 4 2221 135556677777777776641 1 2223466777777777777765533221
Q ss_pred CCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHH----hhcCCCCcEEEccCCCCcCcC----CCCCCCCCCcCEEE
Q 041867 220 SGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWL----LENNTKLRQLSLVNDSLGGPF----RLPIHSHKRLGMLD 291 (776)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~ 291 (776)
.+...+..+++|+++.+++|.+.......+ -...|.|+.+.+.+|.++... ..++...+.|..|+
T Consensus 232 -------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 232 -------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred -------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 122334445667777777776654443332 244577777777777776422 12344467788888
Q ss_pred ceeccCc
Q 041867 292 ISNNNFR 298 (776)
Q Consensus 292 ls~n~l~ 298 (776)
+++|++.
T Consensus 305 LngN~l~ 311 (382)
T KOG1909|consen 305 LNGNRLG 311 (382)
T ss_pred CCccccc
Confidence 8888873
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1.3e-11 Score=119.39 Aligned_cols=191 Identities=19% Similarity=0.184 Sum_probs=94.7
Q ss_pred CCCCCCCCCEEEccCCccccccCcc----ccCCCCCCEEeCCCCcCcccCCc-------------ccccCCCCCCEEecc
Q 041867 105 GLCSPVHLQELYIGSNDLRGSLPWC----MTNLTSLRILDVSSNQLTGSISS-------------SPLIHLTSIEKLYLS 167 (776)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~i~~-------------~~~~~l~~L~~L~L~ 167 (776)
++..+++|++|+||+|-+....+.. +..+..|++|.|.+|.+. .... .....-+.|+++..+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3445556666666666655333322 334566666666666553 1111 012334566666666
Q ss_pred CCccccccC----cccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867 168 NNHFQIPIS----LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243 (776)
Q Consensus 168 ~n~l~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 243 (776)
.|++. ..+ ...+...+.|+.+.+..|.|..... ..+...+.++++|+.||+
T Consensus 166 rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~------------------------~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 166 RNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGV------------------------TALAEALEHCPHLEVLDL 220 (382)
T ss_pred ccccc-cccHHHHHHHHHhccccceEEEecccccCchh------------------------HHHHHHHHhCCcceeeec
Confidence 66654 111 1224445666666666665532110 112334556666666666
Q ss_pred CCCCCcccCChHH---hhcCCCCcEEEccCCCCcCcCCCCC-----CCCCCcCEEEceeccCcccCC----hhhhccCcc
Q 041867 244 SHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGPFRLPI-----HSHKRLGMLDISNNNFRGHIP----IEIGDVLPS 311 (776)
Q Consensus 244 ~~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~~----~~~~~~l~~ 311 (776)
.+|.++......+ +..+++|+.+++.+|.+......+| ...++|+.+.+.+|.++.... ..+.. .|.
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~d 299 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPD 299 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chh
Confidence 6665543222111 2344566666666666654333222 224566666666666552111 11122 456
Q ss_pred cceeecccccC
Q 041867 312 LYLFNNSMNAL 322 (776)
Q Consensus 312 L~~L~l~~n~l 322 (776)
|..|+++.|.+
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 66666666666
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=5e-10 Score=120.39 Aligned_cols=38 Identities=39% Similarity=0.591 Sum_probs=16.7
Q ss_pred cceEEccCCcCCCCChhhhccCccCCeeecccccccccCc
Q 041867 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP 620 (776)
Q Consensus 581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 620 (776)
++.|++++|.++...+ +..+.+++.|++++|.+...++
T Consensus 257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 4444444444442221 4444444444444444444333
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.1e-10 Score=84.21 Aligned_cols=60 Identities=40% Similarity=0.651 Sum_probs=33.3
Q ss_pred cCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccC
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 663 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 663 (776)
+|++|++++|+++.+.++.|.++++|++|++++|.++.+.|++|..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555555555555555555555555555555555555555555555555543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.1e-10 Score=110.09 Aligned_cols=129 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred CCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCC
Q 041867 55 KSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLT 134 (776)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 134 (776)
..|+.+|+++|.|. .+-+++. -.|+++.|++|+|.+.. + +.+..+++|++||||+|.++. ..++-.++-
T Consensus 284 q~LtelDLS~N~I~---~iDESvK-L~Pkir~L~lS~N~i~~----v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLIT---QIDESVK-LAPKLRRLILSQNRIRT----V--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLG 352 (490)
T ss_pred hhhhhccccccchh---hhhhhhh-hccceeEEeccccceee----e--hhhhhcccceEeecccchhHh-hhhhHhhhc
Confidence 34555555555221 2223333 34555555555555542 2 234455555555555555542 222333445
Q ss_pred CCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCccc
Q 041867 135 SLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN 197 (776)
Q Consensus 135 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~ 197 (776)
++++|.|++|.+. .+. .++++-+|..||+++|+|........++++|.|+++.+.+|++.
T Consensus 353 NIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555555555554 332 24455555555555555543333344555555555555555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=7e-10 Score=82.93 Aligned_cols=61 Identities=48% Similarity=0.660 Sum_probs=58.1
Q ss_pred cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 639 (776)
|+|++|++++|+++.+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3799999999999988889999999999999999999999999999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.6e-09 Score=116.39 Aligned_cols=86 Identities=26% Similarity=0.286 Sum_probs=64.0
Q ss_pred cceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCc---CCcc-ccCCCCCCEE
Q 041867 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGK---IPHQ-LVELKTLEVF 656 (776)
Q Consensus 581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L 656 (776)
|+.+++++|++. ..+..+..++.+..|++++|++... ..+.....+..+....|++... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 788899999887 4446677888899999999988765 4566677888888888887622 2221 4556888899
Q ss_pred ecccccCcccCCC
Q 041867 657 SVAYNNLSGEIPE 669 (776)
Q Consensus 657 ~l~~N~l~~~~p~ 669 (776)
.+.+|++....+.
T Consensus 311 ~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 311 TLELNPIRKISSL 323 (414)
T ss_pred ccccCcccccccc
Confidence 9999988875554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.9e-10 Score=105.86 Aligned_cols=183 Identities=22% Similarity=0.212 Sum_probs=119.3
Q ss_pred CCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCcc
Q 041867 6 NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLK 85 (776)
Q Consensus 6 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~ 85 (776)
.|++||||...|+......+++.|++|+.|.|.++.+++.+-. .+.+-++|+.|+++.|. .++.....-+.++|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence 4778888887776554455567888888888888888766655 67777888888888884 344444555556888888
Q ss_pred EEEccCCCCCCCCCCcCCcCCCCC-CCCCEEEccCCccc---cccCccccCCCCCCEEeCCCCcC-cccCCcccccCCCC
Q 041867 86 YLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR---GSLPWCMTNLTSLRILDVSSNQL-TGSISSSPLIHLTS 160 (776)
Q Consensus 86 ~L~L~~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l-~~~i~~~~~~~l~~ 160 (776)
.|+++.|.+.. +.-...+.+. ++|+.|+|++++-. ..+..--..+|+|.+|||++|.. +..... .|-+++.
T Consensus 264 ~LNlsWc~l~~---~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~ 339 (419)
T KOG2120|consen 264 ELNLSWCFLFT---EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNY 339 (419)
T ss_pred hcCchHhhccc---hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcch
Confidence 88888888765 2222233332 47888888877422 11222234788888888887753 211111 4667788
Q ss_pred CCEEeccCCccccccCcccccCCCCCcEEEcccC
Q 041867 161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN 194 (776)
Q Consensus 161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 194 (776)
|++|.++.|........-.+...+.|.+|++.++
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888888886432222233566677777777654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=3.5e-08 Score=113.28 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCCCCEEeCCCCc--CccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867 29 FPSLKNLSISYCE--VNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106 (776)
Q Consensus 29 ~~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 106 (776)
++.|++|-+..|. +. .++...|..++.|++||+++| .-.+.+|..++ .+-+||+|+++++.+.. +|. .+
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~--~~l~~LP~~I~-~Li~LryL~L~~t~I~~----LP~-~l 614 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN--SSLSKLPSSIG-ELVHLRYLDLSDTGISH----LPS-GL 614 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC--CccCcCChHHh-hhhhhhcccccCCCccc----cch-HH
Confidence 3456666655554 22 333334555666666666655 44455555555 66666666666666542 443 56
Q ss_pred CCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCC
Q 041867 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSN 144 (776)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 144 (776)
.++..|.+|++..+.-....|.....+++|++|.+..-
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666666666655544344555555666666655544
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=1.2e-09 Score=115.36 Aligned_cols=111 Identities=28% Similarity=0.340 Sum_probs=90.2
Q ss_pred ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655 (776)
Q Consensus 576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 655 (776)
+.++.+++|||++|+++.. +.+..++.|++|||+.|.++.++--...++. |..|.+++|.++.. ..+.++.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 4568899999999999854 4899999999999999999977555566665 99999999999844 45788999999
Q ss_pred EecccccCcccCC-CccccccccCcccccCCCCCCCC
Q 041867 656 FSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGL 691 (776)
Q Consensus 656 L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~ 691 (776)
||+++|-|.+... ..+..+..|..+.++|||..|..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999998875211 12346778889999999999953
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=6.2e-09 Score=111.92 Aligned_cols=218 Identities=28% Similarity=0.271 Sum_probs=134.4
Q ss_pred cCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCC
Q 041867 357 GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436 (776)
Q Consensus 357 ~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 436 (776)
.+..++.+++..|.+.+ ....+..+.+|+.|++.+|++..+. ..+..+++|++|++++|.|....+
T Consensus 70 ~l~~l~~l~l~~n~i~~------------~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~- 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK------------ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG- 135 (414)
T ss_pred HhHhHHhhccchhhhhh------------hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc-
Confidence 46678888866666542 3344677889999999999998543 337788999999999999885433
Q ss_pred CCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCccc
Q 041867 437 CFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLH 515 (776)
Q Consensus 437 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 515 (776)
.-.+..|+.|++++|.+.. ...+..+++|+.+++++|.+..+.+ . ...+.+++.+++.+|.+.
T Consensus 136 l~~l~~L~~L~l~~N~i~~---------------~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISD---------------ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhccchhhheeccCcchh---------------ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 2223447777766666641 1224446777777777777765544 2 456667777777777665
Q ss_pred CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCC
Q 041867 516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPI 595 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 595 (776)
....... ...+..+++..|.++...
T Consensus 200 ~i~~~~~-------------------------------------------------------~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 200 EIEGLDL-------------------------------------------------------LKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cccchHH-------------------------------------------------------HHHHHHhhcccccceecc
Confidence 3222111 113344466666665332
Q ss_pred hhhhccCcc--CCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867 596 PPQIGNLTR--IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 596 ~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 664 (776)
.+..+.. |+.+++++|++... +..+..+..+..|++++|++... ..+...+.+..+....|++.
T Consensus 225 --~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 225 --GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred --CcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 2222333 67777777777643 24566667777777777777633 22344455666666666655
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=3.9e-09 Score=111.50 Aligned_cols=108 Identities=29% Similarity=0.379 Sum_probs=83.8
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT 159 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 159 (776)
-++.|+.|+|++|++.. . +.+..+++|++|||++|.+....--...++. |+.|.+++|.++ .+.. +.++.
T Consensus 185 ll~ale~LnLshNk~~~----v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~g--ie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK----V--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLRG--IENLK 254 (1096)
T ss_pred HHHHhhhhccchhhhhh----h--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhhh--HHhhh
Confidence 46788999999998865 2 3678888999999999988843333444555 889999999887 5553 78888
Q ss_pred CCCEEeccCCccccccCcccccCCCCCcEEEcccCccc
Q 041867 160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN 197 (776)
Q Consensus 160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~ 197 (776)
+|+.||+++|-+.+.-....++.+..|+.|+|.+|++.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999998876555666778888899999998875
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=2.9e-07 Score=105.89 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=34.2
Q ss_pred ccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEECc
Q 041867 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLS 635 (776)
Q Consensus 578 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 635 (776)
.++|+.|.+..+.....+......+..++.+-+..+.+.+. .-...++++++..+.++
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 46788888888776666666666666666666666666554 23333444444444333
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=9.2e-08 Score=90.78 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=34.3
Q ss_pred cCCCCcEEEccCCCCcCcC-CCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867 259 NNTKLRQLSLVNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324 (776)
Q Consensus 259 ~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 324 (776)
-+|++..+.+..|.+.... ...+..++.+..|+++.+++......+....+++|..+.++++.+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3455555555555443321 22344455555666666666544333333345666666666666553
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.4e-09 Score=98.96 Aligned_cols=207 Identities=20% Similarity=0.118 Sum_probs=114.4
Q ss_pred CCccEEEccCCCCCCCCCCcCCcCCCCC-CCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867 82 PSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT 159 (776)
Q Consensus 82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 159 (776)
....++.+....+.. ...++.+.-. ..|++||||+..|+.. .-.-+..|.+|+.|.|.++++.+.+.. .+.+..
T Consensus 159 rgV~v~Rlar~~~~~---prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~ 234 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQ---PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNS 234 (419)
T ss_pred CCeEEEEcchhhhcC---chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccc
Confidence 456777777655543 2111122222 3589999998888742 334467888999999999998876665 788888
Q ss_pred CCCEEeccCCc-cccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCC---CcccCccccCC
Q 041867 160 SIEKLYLSNNH-FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED---GVTFPKFLYHQ 235 (776)
Q Consensus 160 ~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~~ 235 (776)
+|+.|+++.+. ++.....-.+..++.|.+|+++++....+.-...... -...|+.|++ +++.. ...+......+
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h-ise~l~~LNl-sG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH-ISETLTQLNL-SGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh-hchhhhhhhh-hhhHhhhhhhHHHHHHHhC
Confidence 99999998775 3211111125678899999999988765442221111 1125566666 33211 11122223456
Q ss_pred CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEcee
Q 041867 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISN 294 (776)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~ 294 (776)
++|..||++++..........+-+++.|++|.++.|..-. .....+...+.|.+|++.+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 6666666666543211111112355666666665553221 1112244455555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.1e-07 Score=88.35 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=122.7
Q ss_pred CCCCcEEECCCCCCCCc-cchhccCCCCCCCEEeCCCCcCccccCCCcC-CCCCCCcEEeCCCCccccCcchhHHHHhcC
Q 041867 4 FTNLEYLTLHGSSLHIS-LLQSIASIFPSLKNLSISYCEVNGVVHGQGF-PHFKSLEHLGMMSTRIALNTNFLQVISESM 81 (776)
Q Consensus 4 l~~L~~L~L~~n~~~~~-~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l 81 (776)
+++++.|||.+|.|++= ...+++.++|+|+.|+|+.|.+...+.. + ....+|++|-|.+..+.++ ....+...+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~--~~~s~l~~l 145 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWT--QSTSSLDDL 145 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChh--hhhhhhhcc
Confidence 56788888888888742 1234467888888888888888655442 3 3567888888888744332 223333478
Q ss_pred CCccEEEccCCCCCCCCCCcCCcCCCC-CCCCCEEEccCCcccc--ccCccccCCCCCCEEeCCCCcCcccCCcccccCC
Q 041867 82 PSLKYLSLSYSTLGTNSSRILDRGLCS-PVHLQELYIGSNDLRG--SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHL 158 (776)
Q Consensus 82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l 158 (776)
|.++.|.+|.|.+... .+.+..... -+.+++|.+..|.... .....-.-.|++..+-+..|.+...-....+..+
T Consensus 146 P~vtelHmS~N~~rq~--n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQL--NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred hhhhhhhhccchhhhh--ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 8888888888843220 111111221 1245556555554331 0111122357788888888877643333467778
Q ss_pred CCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccc
Q 041867 159 TSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA 198 (776)
Q Consensus 159 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~ 198 (776)
+.+--|+|+.|++..-....++.++++|..|.++.+++..
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888999999998866677788999999999999988764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=1.1e-07 Score=88.99 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEccCCccccccCc----cccCCCCCCEEeCCCCcCcccCCccc-------------ccCCCCCCEEecc
Q 041867 105 GLCSPVHLQELYIGSNDLRGSLPW----CMTNLTSLRILDVSSNQLTGSISSSP-------------LIHLTSIEKLYLS 167 (776)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~i~~~~-------------~~~l~~L~~L~L~ 167 (776)
++.+|++|+..+||+|.+....|. .++..+.|++|.+++|.+- .+..+. ...-|.|+++.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 445556666666666655543332 2334556666666666542 222211 2245667777777
Q ss_pred CCccc-cccC--cccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867 168 NNHFQ-IPIS--LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS 244 (776)
Q Consensus 168 ~n~l~-~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 244 (776)
.|++. |+.. ...+.....|+++.+..|.|..... +. .+-..+..+++|+.||++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv------------~~-----------L~~~gl~y~~~LevLDlq 222 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV------------TM-----------LAFLGLFYSHSLEVLDLQ 222 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh------------HH-----------HHHHHHHHhCcceeeecc
Confidence 77765 1111 1113334567777777766542210 00 111234566777777777
Q ss_pred CCCCcccCChHHh---hcCCCCcEEEccCCCCc
Q 041867 245 HIKMNGEFPTWLL---ENNTKLRQLSLVNDSLG 274 (776)
Q Consensus 245 ~~~~~~~~~~~~~---~~l~~L~~L~L~~n~~~ 274 (776)
.|.++-.....+. ..-+.|+.|.+.+|-+.
T Consensus 223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred ccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 7766533222221 12233455555555444
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=4.6e-07 Score=85.02 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=58.8
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccc---cc-------cCccccCCCCCCEEeCCCCcCccc
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR---GS-------LPWCMTNLTSLRILDVSSNQLTGS 149 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~-------~~~~~~~l~~L~~L~L~~n~l~~~ 149 (776)
.+..+..++||+|.|.....+.....+.+-.+|+..+++.-... .. +..++.+||.|+..+||+|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46677777777777765443444445555567777776653211 11 234566889999999999987644
Q ss_pred CCc---ccccCCCCCCEEeccCCccc
Q 041867 150 ISS---SPLIHLTSIEKLYLSNNHFQ 172 (776)
Q Consensus 150 i~~---~~~~~l~~L~~L~L~~n~l~ 172 (776)
.|. ..+++-+.|++|.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 443 13556677888888887654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=2.3e-07 Score=77.75 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=60.2
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
.|+..+|++|.+....+..-...+..+.|+|++|.|++++ ..+..++.|+.|+++.|++. ..|+.+..+.+|-.||..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 3555666666666333332233346666777777766543 33666777777777777776 555555556666667766
Q ss_pred cccCcccCCCccccccc-cCcccccCCCCCCCCC
Q 041867 660 YNNLSGEIPEWTAQFAT-FNESSYEGNTFLCGLP 692 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~~~-l~~~~~~~n~~~c~~~ 692 (776)
+|.+. .+|... -.++ .....+..+||--+|+
T Consensus 132 ~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDL-FYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHH-hccccHHHHHhcCCcccccCc
Confidence 66665 334321 1111 1223345556655554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.2e-06 Score=98.28 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCccEEEccCCCCCCCCCCcCCcCCC-CCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867 82 PSLKYLSLSYSTLGTNSSRILDRGLC-SPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT 159 (776)
Q Consensus 82 ~~L~~L~L~~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 159 (776)
.+|++|++++...-. .-.+..++ .+|+|+.|.+++-.+... .-....++|+|..||+|+++++ .+. .+++++
T Consensus 122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK 195 (699)
T ss_pred HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence 456666666644322 11111222 355666666665544322 1122345666777777776666 442 466677
Q ss_pred CCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867 160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239 (776)
Q Consensus 160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 239 (776)
+|++|.+.+-.+........+.++++|+.||+|........ ++-. ..-+.-..+|+|+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~-----------qYlec~~~LpeLr 253 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIE-----------QYLECGMVLPELR 253 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHH-----------HHHHhcccCcccc
Confidence 77777666655553334445667777777777765432111 0000 0112223467899
Q ss_pred EEEcCCCCCcccCChHHhhcCCCCcEEEccC
Q 041867 240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVN 270 (776)
Q Consensus 240 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (776)
.||.|++.+.+.+-+.+...-|+|+.+.+-+
T Consensus 254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 254 FLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred EEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 9999998888777666656666666655443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.00 E-value=2e-07 Score=92.97 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=30.8
Q ss_pred CcccceeecccccCc-cCCCccCCCCCCCCEEEccCCcCCCcCc-hhhhhcCCCCcEEE
Q 041867 309 LPSLYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQSLA 365 (776)
Q Consensus 309 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~ 365 (776)
...|+.+.+++++.. ...-+.+..+++|+.+++..++-...-+ ..+...+++++...
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 345666667666543 2223345667788888887765421212 22223466665554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=9.9e-07 Score=74.04 Aligned_cols=104 Identities=21% Similarity=0.306 Sum_probs=81.7
Q ss_pred ccceEEccCCcCCCCChhhhc---cCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867 580 LLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 656 (776)
-+..+||+.+++. .+++... ....|+..+|++|.+...++..-...+.++.|++++|.|+ .+|+.+..++.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4667899999886 4555544 4456667799999999765544445568999999999998 677779999999999
Q ss_pred ecccccCcccCCCccccccccCcccccCCC
Q 041867 657 SVAYNNLSGEIPEWTAQFATFNESSYEGNT 686 (776)
Q Consensus 657 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~ 686 (776)
+++.|++. ..|..+.++.+|..++..+|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 99999999 556656778888888877774
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.9e-05 Score=71.37 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=71.8
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT 159 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 159 (776)
.+.....+||++|.+.. + ..|..++.|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.+...-.-..+..++
T Consensus 40 ~~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred cccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 34466777888777753 2 36777778888888888888766665556677888888888776222223466777
Q ss_pred CCCEEeccCCcccccc--CcccccCCCCCcEEEcccC
Q 041867 160 SIEKLYLSNNHFQIPI--SLEPLFNHSRLKTFYADNN 194 (776)
Q Consensus 160 ~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~n 194 (776)
+|++|.+-+|+.+... ..-.+..+++|+.||.++-
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888877765211 1223566777777777653
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=3e-06 Score=95.04 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=105.9
Q ss_pred CCCCCEEeCCCCcCc-cccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCC
Q 041867 29 FPSLKNLSISYCEVN-GVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLC 107 (776)
Q Consensus 29 ~~~L~~L~Ls~n~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 107 (776)
-.+|++|++++.... ...+...-..+|.|++|.+.+- .+.......++.++|+|+.||+|++.++. + .+++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGTNISN----L--SGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCCCccC----c--HHHh
Confidence 368999999886432 2222212345899999999887 44444445555689999999999999875 3 4789
Q ss_pred CCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCC---cc---cccCCCCCCEEeccCCccccccCcccc
Q 041867 108 SPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSIS---SS---PLIHLTSIEKLYLSNNHFQIPISLEPL 180 (776)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~---~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l 180 (776)
++++|++|.+.+=.+.. ..-..+.+|++|++||+|..... ..+ .. .-..+|.|+.||.|++.+...+-...+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 99999999988766653 22345678999999999977543 111 10 122488999999999887755444445
Q ss_pred cCCCCCcEEEc
Q 041867 181 FNHSRLKTFYA 191 (776)
Q Consensus 181 ~~l~~L~~L~l 191 (776)
...++|+.+.+
T Consensus 272 ~sH~~L~~i~~ 282 (699)
T KOG3665|consen 272 NSHPNLQQIAA 282 (699)
T ss_pred HhCccHhhhhh
Confidence 56667765543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.4e-05 Score=54.37 Aligned_cols=36 Identities=39% Similarity=0.679 Sum_probs=16.2
Q ss_pred CCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 664 (776)
+|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 23333445555555555555544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=54.16 Aligned_cols=36 Identities=42% Similarity=0.739 Sum_probs=16.6
Q ss_pred cCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 640 (776)
+|++|++++|+|+.+ |..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 445555555555533 223455555555555555554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=3.9e-05 Score=69.38 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=96.2
Q ss_pred ccEEEccCCCCCCCCCCcCCcCCCC-CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867 84 LKYLSLSYSTLGTNSSRILDRGLCS-PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162 (776)
Q Consensus 84 L~~L~L~~n~i~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 162 (776)
=+.++|.+.++.. + ..++. ..+...+||++|.+-.. ..|..++.|.+|.+++|+|+ .|.+.--..+++|+
T Consensus 21 e~e~~LR~lkip~----i--enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPV----I--ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccc----h--hhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence 5667777776643 1 12332 23678899999998743 46889999999999999999 77664455678899
Q ss_pred EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242 (776)
Q Consensus 163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 242 (776)
.|.+.+|++........+..+++|++|.+-+|++..... +. .-.+..+++|+.||
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~--------------------YR-----~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN--------------------YR-----LYVLYKLPSLRTLD 146 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcccC--------------------ce-----eEEEEecCcceEee
Confidence 999999998855566678899999999999998764321 11 01244678889999
Q ss_pred cCCCCCc
Q 041867 243 LSHIKMN 249 (776)
Q Consensus 243 l~~~~~~ 249 (776)
++.....
T Consensus 147 F~kVt~~ 153 (233)
T KOG1644|consen 147 FQKVTRK 153 (233)
T ss_pred hhhhhHH
Confidence 8876543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.66 E-value=0.00011 Score=64.85 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=66.9
Q ss_pred CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867 470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES 549 (776)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (776)
...+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +..+...+|..+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~----------------------- 58 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK----------------------- 58 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-----------------------
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-----------------------
Confidence 345677888888888874 566677777888888888888775 6655556666543
Q ss_pred CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV 629 (776)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 629 (776)
.++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.+. .|
T Consensus 59 ------------------------------~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 59 ------------------------------SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp ------------------------------T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ------------------------------ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 577777765 444355567777888888888765 666666777776 88
Q ss_pred CEEECcCCccCCcCCccccCCCCCC
Q 041867 630 ESLDLSNNKLNGKIPHQLVELKTLE 654 (776)
Q Consensus 630 ~~L~Ls~N~l~~~~~~~l~~l~~L~ 654 (776)
+.+.+.. .+..+....|.+.++|+
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -EEE-TT-B-SS----GGG------
T ss_pred eEEEECC-CccEECCccccccccCC
Confidence 8888776 44446666777666654
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=4.7e-06 Score=83.43 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCCCCcEEECCCCC-CCCccchhccCCCCCCCEEeCCCCc-CccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhc
Q 041867 3 NFTNLEYLTLHGSS-LHISLLQSIASIFPSLKNLSISYCE-VNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISES 80 (776)
Q Consensus 3 ~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~ 80 (776)
++|+++.|++.++. +++....++-..+++|++|++..|. ++......--.++++|++|+++.|. .+.+.-.+.+..+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~-qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP-QISGNGVQALQRG 240 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc-hhhcCcchHHhcc
Confidence 45666677666663 3333333323456777777777643 2222111122346777777777664 3333333333334
Q ss_pred CCCccEEEccCC
Q 041867 81 MPSLKYLSLSYS 92 (776)
Q Consensus 81 l~~L~~L~L~~n 92 (776)
+..++.+.+.+|
T Consensus 241 ~~~l~~~~~kGC 252 (483)
T KOG4341|consen 241 CKELEKLSLKGC 252 (483)
T ss_pred chhhhhhhhccc
Confidence 555555544443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00023 Score=62.72 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT 159 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 159 (776)
++++|+.+.+..+ +. .+...+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +. .++...|.+.
T Consensus 33 ~~~~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~- 103 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC- 103 (129)
T ss_dssp T-TT-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--
T ss_pred ccccccccccccc-cc----ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-
Confidence 4445555555443 22 23344555555555555544 333333445555555555555443 33 4444445554
Q ss_pred CCCEEeccC
Q 041867 160 SIEKLYLSN 168 (776)
Q Consensus 160 ~L~~L~L~~ 168 (776)
+|+.+.+..
T Consensus 104 ~l~~i~~~~ 112 (129)
T PF13306_consen 104 NLKEINIPS 112 (129)
T ss_dssp T--EEE-TT
T ss_pred CceEEEECC
Confidence 555555543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00053 Score=70.91 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=16.7
Q ss_pred CCCCEEECcCCccCCcCCccccCCCCCCEEecccc
Q 041867 627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661 (776)
Q Consensus 627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 661 (776)
++|++|++++|... ..|+.+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666666554 3333333 35666666554
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.26 E-value=0.00082 Score=69.57 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred cCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc-cCCc
Q 041867 414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEG 492 (776)
Q Consensus 414 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 492 (776)
+..+..++.|++++|.+...+ -.+.+|++|.+++|.-- ..+|+.+ .++|+.|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-------------tsLP~~L--P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-------------TTLPGSI--PEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-------------ccCCchh--hhhhhheEccCcccccc
Confidence 445789999999999888553 23668999988775321 1333333 257889999888 4542
Q ss_pred cchhhhcCCCCCCEEeCCCCcc
Q 041867 493 EVLVQLCELNQLQLLDLSNNNL 514 (776)
Q Consensus 493 ~~~~~~~~l~~L~~L~Ls~n~l 514 (776)
.| ++|+.|+++.+..
T Consensus 110 -LP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 110 -LP------ESVRSLEIKGSAT 124 (426)
T ss_pred -cc------cccceEEeCCCCC
Confidence 22 4577888776654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00015 Score=68.80 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=40.9
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCc---ccc
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISS---SPL 155 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~ 155 (776)
.|++|+.|.++.|.....+ .+.. ....+++|++|++++|+|... .-..+..+.+|..|++.+|..++ ... ..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~-~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSG-GLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccc-ccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 4556666666666222111 2221 223346666666666666521 01123445556666666665542 211 135
Q ss_pred cCCCCCCEEec
Q 041867 156 IHLTSIEKLYL 166 (776)
Q Consensus 156 ~~l~~L~~L~L 166 (776)
.-+++|++||-
T Consensus 140 ~ll~~L~~LD~ 150 (260)
T KOG2739|consen 140 LLLPSLKYLDG 150 (260)
T ss_pred HHhhhhccccc
Confidence 55667776654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0012 Score=62.76 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCC--cCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcC
Q 041867 4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYC--EVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESM 81 (776)
Q Consensus 4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l 81 (776)
+..|+.|++.+..++.... +..+++|+.|.+|.| .+.+..+. ....+++|++|++++|+|+....+ ..+. .+
T Consensus 42 ~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl-~pl~-~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTL-RPLK-EL 115 (260)
T ss_pred ccchhhhhhhccceeeccc---CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccccccc-chhh-hh
Confidence 4456666666666553322 667788999999988 44433333 344568999999999977643222 2233 67
Q ss_pred CCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCC
Q 041867 82 PSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120 (776)
Q Consensus 82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n 120 (776)
++|..|++..|..+... ..-...|.-+++|++||-...
T Consensus 116 ~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccc-cHHHHHHHHhhhhcccccccc
Confidence 78889999888765411 111124556778888775443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=6.2e-05 Score=71.33 Aligned_cols=84 Identities=20% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCC
Q 041867 81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTS 160 (776)
Q Consensus 81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 160 (776)
+.+.+.|+..+|.+++ |. ...+++.|++|.||-|+|+.. ..|..|++|++|+|..|.|.+.-.-..+.++++
T Consensus 18 l~~vkKLNcwg~~L~D----Is--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----IS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccH----HH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3455555555555543 21 233455555555555555533 235555555555555555542112224455555
Q ss_pred CCEEeccCCccc
Q 041867 161 IEKLYLSNNHFQ 172 (776)
Q Consensus 161 L~~L~L~~n~l~ 172 (776)
|+.|-|..|+-.
T Consensus 90 Lr~LWL~ENPCc 101 (388)
T KOG2123|consen 90 LRTLWLDENPCC 101 (388)
T ss_pred hhhHhhccCCcc
Confidence 555555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=6.3e-05 Score=71.31 Aligned_cols=84 Identities=25% Similarity=0.305 Sum_probs=70.9
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcE
Q 041867 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT 188 (776)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 188 (776)
+.+.+.|+.-+|++.++ ....+++.|++|.|+-|+|+ .+.. +..+++|++|+|..|.|........+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45678899999999865 44568999999999999998 6664 8999999999999999986556677889999999
Q ss_pred EEcccCccc
Q 041867 189 FYADNNELN 197 (776)
Q Consensus 189 L~l~~n~~~ 197 (776)
|.|..|+-.
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 999988754
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.18 E-value=0.0011 Score=73.74 Aligned_cols=65 Identities=22% Similarity=0.183 Sum_probs=29.5
Q ss_pred CCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCC-CCCCCCCcCCcCCCCCCCCCEEEccCCcc
Q 041867 54 FKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYST-LGTNSSRILDRGLCSPVHLQELYIGSNDL 122 (776)
Q Consensus 54 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 122 (776)
+++|+.|+++.+. .+++.....+...+++|++|.+.++. +++.+ .......+++|++|++++|..
T Consensus 242 ~~~L~~l~l~~~~-~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g---l~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCG-LVTDIGLSALASRCPNLETLSLSNCSNLTDEG---LVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhh-ccCchhHHHHHhhCCCcceEccCCCCccchhH---HHHHHHhcCcccEEeeecCcc
Confidence 4555555555552 13334444444345555555555554 33311 111223345555555555543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.00087 Score=74.49 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=9.3
Q ss_pred hhcCCCCcEEEccCCC
Q 041867 257 LENNTKLRQLSLVNDS 272 (776)
Q Consensus 257 ~~~l~~L~~L~L~~n~ 272 (776)
...++.++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3555666666665555
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.83 E-value=0.012 Score=73.71 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=38.0
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERD 712 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~ 712 (776)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+.- ..|..+-...+...-.-....|..|....+.++.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L-----~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~ 75 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL-----ARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPL 75 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc-----HHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCc
Confidence 4667777766666666666777777766666653322 11111111110000000112588888777776655544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.64 E-value=0.016 Score=32.49 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=9.6
Q ss_pred CCEEEccCCccccccCcccc
Q 041867 112 LQELYIGSNDLRGSLPWCMT 131 (776)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~~ 131 (776)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3444344
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.64 E-value=0.014 Score=32.80 Aligned_cols=11 Identities=64% Similarity=0.791 Sum_probs=4.3
Q ss_pred CEEECcCCccC
Q 041867 630 ESLDLSNNKLN 640 (776)
Q Consensus 630 ~~L~Ls~N~l~ 640 (776)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.57 E-value=0.001 Score=71.73 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCCcEEEccCCCCcCcCC----CCCCCCCCcCEEEceeccCc
Q 041867 261 TKLRQLSLVNDSLGGPFR----LPIHSHKRLGMLDISNNNFR 298 (776)
Q Consensus 261 ~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~ls~n~l~ 298 (776)
+.+++++++.|.+++... ..+..++.++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 344566666666654332 22344567777777777665
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.01 E-value=0.0014 Score=70.72 Aligned_cols=191 Identities=24% Similarity=0.201 Sum_probs=124.2
Q ss_pred CcEEECCCCCCCCccchh---ccCCCCCCCEEeCCCCcCccccC---CCcCCCC-CCCcEEeCCCCccccCc--chhHHH
Q 041867 7 LEYLTLHGSSLHISLLQS---IASIFPSLKNLSISYCEVNGVVH---GQGFPHF-KSLEHLGMMSTRIALNT--NFLQVI 77 (776)
Q Consensus 7 L~~L~L~~n~~~~~~~~~---~~~~~~~L~~L~Ls~n~~~~~~~---~~~~~~l-~~L~~L~l~~~~i~~~~--~~~~~~ 77 (776)
+..|.|.+|.+.+..... .+...+.|..|++++|.+.+.-. ...+... ..+++|++..|.+...+ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888887543221 15567889999999998862210 0123333 56777888888333222 233444
Q ss_pred HhcCCCccEEEccCCCCCCCCCCcCCcCCCC----CCCCCEEEccCCccccc----cCccccCCCC-CCEEeCCCCcCcc
Q 041867 78 SESMPSLKYLSLSYSTLGTNSSRILDRGLCS----PVHLQELYIGSNDLRGS----LPWCMTNLTS-LRILDVSSNQLTG 148 (776)
Q Consensus 78 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~ 148 (776)
. ....++.++++.|.+...+.......+.. ..++++|.+++|.++.. ....+...+. ++.|++..|.+.+
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5 47889999999998865444444445543 66899999999988732 2234555566 7779999998763
Q ss_pred c----CCcccccCC-CCCCEEeccCCccccc---cCcccccCCCCCcEEEcccCccccc
Q 041867 149 S----ISSSPLIHL-TSIEKLYLSNNHFQIP---ISLEPLFNHSRLKTFYADNNELNAE 199 (776)
Q Consensus 149 ~----i~~~~~~~l-~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~l~~n~~~~~ 199 (776)
. ..+ .+..+ ..+++++++.|.++.. .....+..++.++.+.+..|.+...
T Consensus 248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3 122 34455 6789999999988721 1223356677899999999987653
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.89 E-value=0.11 Score=30.51 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=5.9
Q ss_pred CCCEEECcCCccC
Q 041867 628 HVESLDLSNNKLN 640 (776)
Q Consensus 628 ~L~~L~Ls~N~l~ 640 (776)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.89 E-value=0.11 Score=30.51 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=5.9
Q ss_pred CCCEEECcCCccC
Q 041867 628 HVESLDLSNNKLN 640 (776)
Q Consensus 628 ~L~~L~Ls~N~l~ 640 (776)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.25 E-value=0.17 Score=29.65 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=8.6
Q ss_pred ccCCeeecccccccccCc
Q 041867 603 TRIQTLNLSHNDLIGLIP 620 (776)
Q Consensus 603 ~~L~~L~Ls~N~l~~~~~ 620 (776)
++|+.|+|++|+|+.+++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.25 E-value=0.17 Score=29.65 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=8.6
Q ss_pred ccCCeeecccccccccCc
Q 041867 603 TRIQTLNLSHNDLIGLIP 620 (776)
Q Consensus 603 ~~L~~L~Ls~N~l~~~~~ 620 (776)
++|+.|+|++|+|+.+++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.60 E-value=0.0099 Score=55.33 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=72.7
Q ss_pred cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 658 (776)
...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+.++..+..+++.+|..+ ..|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 36788999999987 45567888999999999999998 56788899999999999999997 78889999999999999
Q ss_pred ccccCc
Q 041867 659 AYNNLS 664 (776)
Q Consensus 659 ~~N~l~ 664 (776)
-+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999976
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.23 E-value=0.21 Score=25.92 Aligned_cols=13 Identities=69% Similarity=0.805 Sum_probs=5.8
Q ss_pred CCCEEEccCCcCC
Q 041867 335 FLQILDLSNNHLT 347 (776)
Q Consensus 335 ~L~~L~l~~n~l~ 347 (776)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.54 E-value=0.0097 Score=55.38 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCc
Q 041867 591 LIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670 (776)
Q Consensus 591 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 670 (776)
++.+.-..+......+.||++.|++... -..|+-++.|..||++.|++. ..|..+..+..+..+++.+|..+ ..|..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 3334445677788999999999998744 456888899999999999998 78888888888999999999998 56777
Q ss_pred cccccccCcccccCCC
Q 041867 671 TAQFATFNESSYEGNT 686 (776)
Q Consensus 671 ~~~~~~l~~~~~~~n~ 686 (776)
+.+.+..+..+.-+||
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 8889888888888775
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=0.085 Score=48.43 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCC-CCCCCCCcCCcCCCCC
Q 041867 31 SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYST-LGTNSSRILDRGLCSP 109 (776)
Q Consensus 31 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~l 109 (776)
.++.+|=+++.|...-- ..+..++.++.|.+.+|+ .+...-.+.+..-.++|+.|++++|. |++ .-. ..+.++
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL-~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGL-ACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeech---hHH-HHHHHh
Confidence 35556666666543211 245666777777777773 33333334444345788888888775 333 111 134556
Q ss_pred CCCCEEEccCC
Q 041867 110 VHLQELYIGSN 120 (776)
Q Consensus 110 ~~L~~L~Ls~n 120 (776)
++|+.|.+.+=
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 67777766653
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.52 E-value=4.1 Score=42.82 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=11.7
Q ss_pred CCCCEEeCCCCcCccccCC
Q 041867 30 PSLKNLSISYCEVNGVVHG 48 (776)
Q Consensus 30 ~~L~~L~Ls~n~~~~~~~~ 48 (776)
+.+++++++.|.+...+|.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 4566777777766555443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.71 E-value=0.18 Score=28.85 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcccc
Q 041867 110 VHLQELYIGSNDLRG 124 (776)
Q Consensus 110 ~~L~~L~Ls~n~l~~ 124 (776)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=0.34 Score=44.69 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
..++.++-++..|..+.-+.+.++++++.|.+.+|.-.+. .-|+. .-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD-------~~L~~-----------------------l~--- 147 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD-------WCLER-----------------------LG--- 147 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh-------HHHHH-----------------------hc---
Confidence 4577888888888777667777888888887777653210 00000 00
Q ss_pred hccCccCCEEEcccc-cCCccchhhhcCCCCCCEEeCCCC
Q 041867 474 VDGLSQLSHLILGHN-NLEGEVLVQLCELNQLQLLDLSNN 512 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 512 (776)
...++|+.|++++| .|++.....+..+++|+.|.+.+=
T Consensus 148 -~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 148 -GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred -ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 12467888888877 577666667777788888877653
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.10 E-value=2.3 Score=24.97 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=7.7
Q ss_pred CCCCEEECcCCccC
Q 041867 627 KHVESLDLSNNKLN 640 (776)
Q Consensus 627 ~~L~~L~Ls~N~l~ 640 (776)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 88
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=70.51 E-value=5 Score=33.63 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 041867 724 TFTTSYVIVIFAIVIILYVNSYWRRRWFYFVE 755 (776)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (776)
.+++++.+++++.++.+++++|+|+++...-+
T Consensus 104 ~~il~il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 104 PGIVLVLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeecccCchhh
Confidence 34445555566666667778888887765433
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.83 E-value=4.1 Score=23.82 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=6.4
Q ss_pred CCCEEECcCCccC
Q 041867 628 HVESLDLSNNKLN 640 (776)
Q Consensus 628 ~L~~L~Ls~N~l~ 640 (776)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.21 E-value=6 Score=23.61 Aligned_cols=13 Identities=62% Similarity=0.828 Sum_probs=7.2
Q ss_pred CCCEEECcCCccC
Q 041867 628 HVESLDLSNNKLN 640 (776)
Q Consensus 628 ~L~~L~Ls~N~l~ 640 (776)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.32 E-value=29 Score=36.84 Aligned_cols=65 Identities=29% Similarity=0.291 Sum_probs=31.2
Q ss_pred CCCEEEccCCcCCCcCchhhhhcC--CCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccc
Q 041867 335 FLQILDLSNNHLTGEIPEHLAVGC--VNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407 (776)
Q Consensus 335 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 407 (776)
.+.+++++.|...+.+|..+-... .-++.++.+...+. +|. ...+-.++.-++++..+++.|..+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgir--lD~------l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIR--LDL------LTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccc--hhh------cccccccccccccchhhhccCCCC
Confidence 466777777777766665443212 23444443333322 110 012222344456666666666443
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=61.48 E-value=5.8 Score=51.36 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.9
Q ss_pred ecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 609 NLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 609 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
||++|+|+.+.++.|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999999999999999999999999999874
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.56 E-value=7.9 Score=41.73 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=41.6
Q ss_pred CCCCCcEEECCCCCCCCccc-hhccCCCCCCCEEeCCCC--cCccccCCCcCCC--CCCCcEEeCCCCccccCcc----h
Q 041867 3 NFTNLEYLTLHGSSLHISLL-QSIASIFPSLKNLSISYC--EVNGVVHGQGFPH--FKSLEHLGMMSTRIALNTN----F 73 (776)
Q Consensus 3 ~l~~L~~L~L~~n~~~~~~~-~~~~~~~~~L~~L~Ls~n--~~~~~~~~~~~~~--l~~L~~L~l~~~~i~~~~~----~ 73 (776)
+.+.+..++|++|++..... .++-...|+|+.|+|++| .+... + .+.+ ...|++|-+.+|++.-+.. .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~--el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-S--ELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-h--hhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 45666677777776654321 122235577777777777 33211 1 2222 3445667777774332211 1
Q ss_pred hHHHHhcCCCccEEE
Q 041867 74 LQVISESMPSLKYLS 88 (776)
Q Consensus 74 ~~~~~~~l~~L~~L~ 88 (776)
..++.+.+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 123333456666655
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=55.49 E-value=4.5 Score=35.20 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 041867 728 SYVIVIFAIVIILYVNSYWRR 748 (776)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~ 748 (776)
.+++++++++++++++++||.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHheeEEeeccc
Confidence 333444444444445555554
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.22 E-value=5.8 Score=42.71 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=15.6
Q ss_pred cccceEEccCCcCCCCC--hhhhccCccCCeeecccc
Q 041867 579 SLLSGLDLSCNKLIGPI--PPQIGNLTRIQTLNLSHN 613 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N 613 (776)
+.+..++|++|++.... ...-...|.|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555566666554221 111122345555555555
No 96
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=50.43 E-value=10 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=14.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhhh
Q 041867 719 DSFFITFTTSYVIVIFAIVIILYVN 743 (776)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (776)
..+++++++|+++|+++++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 3455666666666555555555543
No 97
>PTZ00370 STEVOR; Provisional
Probab=47.85 E-value=17 Score=35.61 Aligned_cols=6 Identities=0% Similarity=0.296 Sum_probs=2.2
Q ss_pred Hhhhhh
Q 041867 740 LYVNSY 745 (776)
Q Consensus 740 ~~~~~~ 745 (776)
+|.+|+
T Consensus 276 iwlyrr 281 (296)
T PTZ00370 276 IWLYRR 281 (296)
T ss_pred HHHHHh
Confidence 333333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.27 E-value=27 Score=20.22 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.0
Q ss_pred CCcEEeCCCC
Q 041867 56 SLEHLGMMST 65 (776)
Q Consensus 56 ~L~~L~l~~~ 65 (776)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 99
>PTZ00046 rifin; Provisional
Probab=38.89 E-value=36 Score=34.97 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHH
Q 041867 728 SYVIVIFAIVIILYVNSYWRRRWF 751 (776)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~ 751 (776)
++++++|++.+++|+..||||+.-
T Consensus 322 iAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 322 VAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcch
Confidence 333444444444555555555543
No 100
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.03 E-value=39 Score=34.64 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHH
Q 041867 729 YVIVIFAIVIILYVNSYWRRRWF 751 (776)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~ 751 (776)
+++++|++.+++|+..||||+.-
T Consensus 318 AIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 318 AILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhhcch
Confidence 33444444444555555555543
No 101
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=35.41 E-value=18 Score=25.05 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.7
Q ss_pred CCCCCCCCCC
Q 041867 685 NTFLCGLPLP 694 (776)
Q Consensus 685 n~~~c~~~~~ 694 (776)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999874
No 102
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=32.91 E-value=56 Score=25.97 Aligned_cols=29 Identities=3% Similarity=0.182 Sum_probs=14.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 041867 719 DSFFITFTTSYVIVIFAIVIILYVNSYWR 747 (776)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (776)
.|.+++.+.++++++++++.+.+.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 34555555555555555444444444443
No 103
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=31.71 E-value=13 Score=30.33 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 041867 725 FTTSYVIVI 733 (776)
Q Consensus 725 ~~~~~~~~~ 733 (776)
++++.++++
T Consensus 71 i~vg~~~~v 79 (96)
T PTZ00382 71 ISVAVVAVV 79 (96)
T ss_pred EEeehhhHH
Confidence 333333333
No 104
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.32 E-value=7.8 Score=34.03 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.7
Q ss_pred hhhhhhHH
Q 041867 722 FITFTTSY 729 (776)
Q Consensus 722 ~~~~~~~~ 729 (776)
++++++|+
T Consensus 51 VIGvVVGV 58 (154)
T PF04478_consen 51 VIGVVVGV 58 (154)
T ss_pred EEEEEecc
Confidence 34444444
No 105
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=29.15 E-value=22 Score=36.39 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=0.7
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHH-HhhhhhhhhHH
Q 041867 715 LIDMDSFFITFTTSYVIVIFAIVII-LYVNSYWRRRW 750 (776)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 750 (776)
+....++-|..+++.++++++++++ +|++.+++++.
T Consensus 4 lYQkrVLTITgIcvaLlVVGi~Cvv~aYCKTKKQRkk 40 (404)
T PF02158_consen 4 LYQKRVLTITGICVALLVVGIVCVVDAYCKTKKQRKK 40 (404)
T ss_dssp SS-----------------------------------
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344455566666666667777777 67766555443
No 106
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.82 E-value=70 Score=32.35 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=15.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhh
Q 041867 721 FFITFTTSYVIVIFAIVIILYVNSY 745 (776)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (776)
....++++++|++.+++.+++.|||
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666677777776655
No 107
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.54 E-value=1.6e+02 Score=21.83 Aligned_cols=7 Identities=0% Similarity=0.306 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 041867 729 YVIVIFA 735 (776)
Q Consensus 729 ~~~~~~~ 735 (776)
+++++++
T Consensus 28 f~~G~ll 34 (68)
T PF06305_consen 28 FLLGALL 34 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 108
>PRK00523 hypothetical protein; Provisional
Probab=25.04 E-value=1.5e+02 Score=22.56 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=5.0
Q ss_pred HhhhhhhhhHHH
Q 041867 740 LYVNSYWRRRWF 751 (776)
Q Consensus 740 ~~~~~~~~~~~~ 751 (776)
++.-|++-.+|+
T Consensus 23 ffiark~~~k~l 34 (72)
T PRK00523 23 YFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 109
>PTZ00370 STEVOR; Provisional
Probab=24.35 E-value=70 Score=31.62 Aligned_cols=23 Identities=4% Similarity=0.353 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhh
Q 041867 724 TFTTSYVIVIFAIVIILYVNSYW 746 (776)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~ 746 (776)
..+++++|+++++|+++..+.|.
T Consensus 256 Pygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666554
No 110
>PRK01844 hypothetical protein; Provisional
Probab=24.18 E-value=1.5e+02 Score=22.45 Aligned_cols=12 Identities=0% Similarity=0.409 Sum_probs=4.7
Q ss_pred HhhhhhhhhHHH
Q 041867 740 LYVNSYWRRRWF 751 (776)
Q Consensus 740 ~~~~~~~~~~~~ 751 (776)
++.-|++-.+|+
T Consensus 22 ff~ark~~~k~l 33 (72)
T PRK01844 22 FFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333344434333
No 111
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.99 E-value=71 Score=31.47 Aligned_cols=23 Identities=9% Similarity=0.374 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhh
Q 041867 724 TFTTSYVIVIFAIVIILYVNSYW 746 (776)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~ 746 (776)
..+++.+|+++++|+++..+.|.
T Consensus 260 Pcgiaalvllil~vvliiLYiWl 282 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWL 282 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666553
No 112
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=23.10 E-value=1e+02 Score=22.28 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 041867 728 SYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 758 (776)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (776)
.++++++++...+...+.-|-++|.++.+.|
T Consensus 15 ~~vv~~GvlAlPvMLf~~dRArfYSyLhrvW 45 (63)
T PF10725_consen 15 IFVVLAGVLALPVMLFRSDRARFYSYLHRVW 45 (63)
T ss_pred HHHHHHHHhhhheeeeecchhHHHHHHHHHH
Confidence 3455555666666666777888888887665
No 113
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.04 E-value=1.5e+02 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=14.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 041867 719 DSFFITFTTSYVIVIFAIVIILYVNSYWRR 748 (776)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (776)
++..|+++.++++.+...+.=+|++++..+
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDR 61 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhh
Confidence 344555555544444444444455444333
No 114
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=20.83 E-value=33 Score=29.02 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhHHHH
Q 041867 738 IILYVNSYWRRRWFY 752 (776)
Q Consensus 738 ~~~~~~~~~~~~~~~ 752 (776)
.++|+++.+|++.|.
T Consensus 97 g~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 97 GFLVWRRCRRREKFT 111 (129)
T ss_dssp ---------------
T ss_pred HHHHHhhhhccccCC
Confidence 445555555555543
Done!