Query 041867
Match_columns 776
No_of_seqs 557 out of 4284
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.4E-70 2.9E-74 633.1 44.9 656 1-702 73-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-65 4.6E-70 597.7 39.7 643 5-692 50-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-60 3.7E-65 552.4 44.0 591 7-693 6-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 1E-56 3.5E-61 528.4 43.7 561 8-716 7-608 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-54 1.8E-58 496.4 48.9 564 33-688 7-597 (680)
6 3t6q_A CD180 antigen; protein- 100.0 2.1E-54 7E-59 493.2 42.6 560 7-711 14-602 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-54 1.1E-58 491.6 36.7 530 7-667 13-561 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.5E-53 8.4E-58 484.3 39.0 524 5-669 33-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-51 7.1E-56 483.3 41.7 522 4-669 23-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-50 5.8E-55 460.9 36.7 514 5-644 32-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2.3E-46 7.9E-51 424.0 39.2 276 336-694 259-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.9E-46 6.6E-51 424.6 38.3 509 7-669 9-536 (570)
13 4g8a_A TOLL-like receptor 4; l 100.0 9.4E-46 3.2E-50 425.2 37.2 550 9-711 35-622 (635)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-45 4.8E-50 415.2 34.3 493 85-692 8-514 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-45 2.1E-49 409.9 34.6 445 80-668 48-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-44 4.2E-49 404.3 24.8 457 86-668 4-485 (520)
17 4eco_A Uncharacterized protein 100.0 2E-45 6.9E-50 417.8 17.8 456 110-667 81-603 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-43 1.6E-47 391.6 29.1 460 8-644 3-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 5.9E-43 2E-47 402.7 27.3 382 222-692 435-870 (876)
20 4eco_A Uncharacterized protein 100.0 8.1E-44 2.8E-48 404.6 16.1 370 119-520 192-605 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-42 2.4E-46 384.9 25.0 440 110-668 52-514 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-41 4.1E-46 391.9 27.0 325 5-371 323-709 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 5E-41 1.7E-45 385.8 31.6 542 6-694 53-612 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-40 6.6E-45 373.2 29.2 464 29-644 30-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.3E-38 1.5E-42 345.4 29.3 364 236-668 30-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-37 4E-42 341.9 28.6 373 239-693 13-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-36 5.9E-41 328.9 23.5 425 4-674 10-439 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 7.8E-36 2.7E-40 323.7 27.3 404 81-690 10-431 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.2E-36 1.1E-40 332.2 24.1 306 285-692 32-337 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 4.3E-35 1.5E-39 323.2 22.5 348 238-692 13-360 (477)
31 1o6v_A Internalin A; bacterial 100.0 5.3E-33 1.8E-37 304.8 33.9 260 281-665 130-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-33 8.9E-38 304.2 26.5 357 105-670 37-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.4E-32 4.9E-37 301.3 30.8 345 235-689 45-389 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-32 3.8E-37 299.3 28.3 153 235-431 147-299 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.7E-33 9.1E-38 300.1 21.2 335 235-692 44-378 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 2.4E-32 8.1E-37 292.7 23.6 316 283-694 43-358 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-32 4.3E-37 284.4 17.4 261 334-697 50-313 (313)
38 3oja_B Anopheles plasmodium-re 100.0 2.7E-32 9.2E-37 308.3 21.2 335 235-692 50-384 (597)
39 3oja_B Anopheles plasmodium-re 100.0 7.2E-32 2.4E-36 304.8 22.8 313 284-692 50-362 (597)
40 4fmz_A Internalin; leucine ric 100.0 6.4E-31 2.2E-35 277.1 28.6 305 259-664 42-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 2.6E-30 8.9E-35 272.4 26.7 307 280-687 39-345 (347)
42 2ft3_A Biglycan; proteoglycan, 100.0 6.9E-30 2.4E-34 266.9 24.3 287 286-661 34-330 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.4E-34 264.1 25.5 126 287-431 33-158 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-29 1.6E-33 260.6 24.3 288 237-638 34-331 (332)
45 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-30 9.8E-35 266.6 14.1 251 311-665 51-305 (313)
46 3zyj_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 272.3 22.6 247 336-665 45-293 (440)
47 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.6E-33 256.4 26.6 268 286-662 53-330 (330)
48 3zyi_A Leucine-rich repeat-con 100.0 5.7E-29 1.9E-33 271.6 22.7 249 337-668 57-307 (452)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.9E-37 302.8 -7.0 368 236-666 3-413 (461)
50 1z7x_W Ribonuclease inhibitor; 100.0 4.3E-32 1.5E-36 298.2 -3.4 348 229-668 49-444 (461)
51 2z66_A Variable lymphocyte rec 100.0 2.7E-29 9.4E-34 259.4 15.3 287 313-708 10-300 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 9.3E-29 3.2E-33 260.8 15.7 217 387-668 93-318 (353)
53 2z66_A Variable lymphocyte rec 100.0 7.7E-28 2.6E-32 248.5 17.8 246 289-641 11-262 (306)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.3E-32 244.0 18.2 261 337-709 14-275 (285)
55 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.7E-31 252.6 24.4 250 286-641 44-293 (440)
56 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-27 2E-31 239.2 18.4 254 313-671 14-268 (285)
57 3zyi_A Leucine-rich repeat-con 99.9 3E-26 1E-30 250.0 24.8 249 287-641 56-304 (452)
58 2z80_A TOLL-like receptor 2, v 99.9 5.7E-27 1.9E-31 247.1 17.2 259 311-644 53-318 (353)
59 3ogk_B Coronatine-insensitive 99.9 2.7E-29 9.3E-34 285.2 -3.5 336 53-431 110-476 (592)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.7E-32 248.1 4.7 260 312-685 12-272 (317)
61 4fcg_A Uncharacterized protein 99.9 6.6E-26 2.3E-30 235.3 18.1 235 333-664 80-314 (328)
62 3ogk_B Coronatine-insensitive 99.9 4E-28 1.4E-32 275.6 0.8 360 28-430 110-500 (592)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.8E-29 243.0 25.9 189 393-675 120-308 (622)
64 4fcg_A Uncharacterized protein 99.9 5.6E-25 1.9E-29 228.3 21.0 227 309-641 80-315 (328)
65 3oja_A Leucine-rich immune mol 99.9 3.9E-26 1.3E-30 250.1 11.9 231 385-693 49-287 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 7.8E-25 2.7E-29 222.2 19.3 87 580-667 150-240 (276)
67 2o6q_A Variable lymphocyte rec 99.9 2.3E-24 7.8E-29 217.7 21.9 206 395-692 17-222 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-26 5.6E-31 239.2 6.0 268 286-669 11-281 (317)
69 1wwl_A Monocyte differentiatio 99.9 4.5E-26 1.5E-30 235.4 7.7 184 284-518 42-244 (312)
70 1p9a_G Platelet glycoprotein I 99.9 3.5E-24 1.2E-28 217.9 20.1 168 469-693 46-213 (290)
71 2p1m_B Transport inhibitor res 99.9 7.9E-28 2.7E-32 273.3 -8.4 440 23-513 59-542 (594)
72 1wwl_A Monocyte differentiatio 99.9 4.6E-26 1.6E-30 235.3 5.1 246 332-664 41-309 (312)
73 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-23 1.5E-27 230.1 28.6 258 311-689 41-298 (622)
74 2z62_A TOLL-like receptor 4, v 99.9 4.2E-24 1.4E-28 216.7 18.5 210 394-693 28-242 (276)
75 3oja_A Leucine-rich immune mol 99.9 3.8E-25 1.3E-29 242.3 9.5 245 333-668 33-286 (487)
76 2o6q_A Variable lymphocyte rec 99.9 4.2E-23 1.5E-27 208.3 23.1 187 394-669 37-223 (270)
77 2p1m_B Transport inhibitor res 99.9 8.5E-27 2.9E-31 264.9 -7.3 64 108-172 103-169 (594)
78 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.7E-27 206.1 19.2 181 394-667 31-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.9E-22 6.5E-27 203.7 17.4 187 390-674 59-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 8.4E-22 2.9E-26 196.4 19.2 148 469-669 50-197 (251)
81 3m19_A Variable lymphocyte rec 99.9 8.2E-22 2.8E-26 196.5 19.0 162 478-692 35-197 (251)
82 3rfs_A Internalin B, repeat mo 99.9 1.4E-21 4.8E-26 197.3 19.4 204 395-669 20-223 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 2.6E-21 8.8E-26 191.5 15.4 86 335-431 32-118 (239)
84 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.1E-27 214.5 6.0 87 580-666 197-299 (362)
85 1h6u_A Internalin H; cell adhe 99.9 7.8E-21 2.7E-25 195.3 19.1 80 580-665 152-231 (308)
86 2v9t_B SLIT homolog 2 protein 99.9 1.6E-21 5.5E-26 189.6 11.5 176 478-714 32-207 (220)
87 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 190.4 14.0 81 583-664 134-218 (239)
88 2ca6_A RAN GTPase-activating p 99.8 3.8E-23 1.3E-27 220.7 -0.8 250 326-668 24-320 (386)
89 4glp_A Monocyte differentiatio 99.8 9.7E-21 3.3E-25 195.2 15.2 132 381-521 102-243 (310)
90 3goz_A Leucine-rich repeat-con 99.8 7.2E-22 2.5E-26 208.5 6.3 126 472-645 160-302 (362)
91 4glp_A Monocyte differentiatio 99.8 9.7E-21 3.3E-25 195.2 13.1 205 393-688 90-307 (310)
92 2v70_A SLIT-2, SLIT homolog 2 99.8 7.8E-21 2.7E-25 184.7 11.0 138 478-668 32-170 (220)
93 4ay9_X Follicle-stimulating ho 99.8 6E-20 2E-24 192.7 17.1 225 334-663 30-258 (350)
94 1h6u_A Internalin H; cell adhe 99.8 1.5E-19 5E-24 185.8 18.6 194 331-641 38-231 (308)
95 2ast_B S-phase kinase-associat 99.8 1E-21 3.5E-26 205.7 1.8 90 579-672 222-314 (336)
96 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4E-24 190.4 17.3 204 288-519 12-219 (350)
97 2xot_A Amphoterin-induced prot 99.8 3.3E-20 1.1E-24 195.4 12.4 161 479-692 40-206 (361)
98 2ca6_A RAN GTPase-activating p 99.8 1E-21 3.5E-26 209.6 0.9 240 309-644 31-320 (386)
99 2ast_B S-phase kinase-associat 99.8 5.8E-21 2E-25 199.9 4.6 256 286-649 48-315 (336)
100 3e6j_A Variable lymphocyte rec 99.8 6.8E-19 2.3E-23 172.3 15.2 137 478-668 40-176 (229)
101 3cvr_A Invasion plasmid antige 99.8 5.5E-19 1.9E-23 194.5 14.9 87 580-675 161-254 (571)
102 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 168.7 15.0 146 469-674 43-188 (208)
103 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.4E-23 169.0 15.4 158 481-694 14-171 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-18 5.1E-23 168.5 15.2 175 481-711 14-205 (220)
105 1h6t_A Internalin B; cell adhe 99.8 4.4E-18 1.5E-22 173.0 16.3 81 579-665 134-214 (291)
106 3e6j_A Variable lymphocyte rec 99.8 5.4E-18 1.9E-22 165.8 16.3 157 479-692 20-176 (229)
107 2wfh_A SLIT homolog 2 protein 99.8 1.8E-18 6.2E-23 163.9 12.1 134 580-714 32-181 (193)
108 1w8a_A SLIT protein; signaling 99.8 3.6E-18 1.2E-22 162.0 13.4 134 580-713 30-180 (192)
109 2xot_A Amphoterin-induced prot 99.8 2.2E-18 7.5E-23 181.4 12.3 145 469-666 54-204 (361)
110 2o6s_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 161.4 16.1 139 477-668 27-165 (208)
111 1m9s_A Internalin B; cell inva 99.7 3.6E-17 1.2E-21 182.3 17.4 58 580-641 154-211 (605)
112 1xeu_A Internalin C; cellular 99.7 9E-18 3.1E-22 167.9 10.8 170 393-666 18-187 (263)
113 1h6t_A Internalin B; cell adhe 99.7 5.8E-17 2E-21 164.8 16.4 58 580-641 157-214 (291)
114 3cvr_A Invasion plasmid antige 99.7 6.5E-17 2.2E-21 178.0 17.6 42 582-624 210-251 (571)
115 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 155.5 12.1 157 481-694 11-168 (192)
116 3sb4_A Hypothetical leucine ri 99.7 3E-17 1E-21 170.6 12.8 76 580-657 251-327 (329)
117 1m9s_A Internalin B; cell inva 99.7 8.3E-17 2.8E-21 179.4 16.3 197 311-624 22-218 (605)
118 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.1E-21 152.4 12.6 133 474-665 62-195 (197)
119 1dce_A Protein (RAB geranylger 99.7 8.9E-19 3.1E-23 194.2 -7.2 208 391-680 346-565 (567)
120 4ezg_A Putative uncharacterize 99.7 2.8E-16 9.6E-21 149.8 10.6 153 474-687 40-193 (197)
121 3sb4_A Hypothetical leucine ri 99.7 3.4E-16 1.1E-20 162.6 11.9 220 333-634 100-328 (329)
122 1xeu_A Internalin C; cellular 99.6 3.9E-16 1.3E-20 156.0 11.4 152 473-690 36-187 (263)
123 4fdw_A Leucine rich hypothetic 99.6 5.1E-15 1.8E-19 156.7 19.7 248 327-664 129-383 (401)
124 4fdw_A Leucine rich hypothetic 99.6 4.6E-15 1.6E-19 157.0 19.0 252 333-674 112-368 (401)
125 2o6r_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 142.3 13.0 113 580-692 29-141 (177)
126 1dce_A Protein (RAB geranylger 99.6 5E-18 1.7E-22 188.2 -4.8 171 469-690 363-548 (567)
127 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 141.6 10.9 137 477-669 23-164 (168)
128 2o6r_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 138.8 13.3 133 480-668 9-141 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 140.7 12.7 131 481-668 13-143 (193)
130 4b8c_D Glucose-repressible alc 99.6 4.7E-16 1.6E-20 178.0 6.8 223 334-664 173-404 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.5E-20 136.5 9.8 129 477-660 16-149 (149)
132 4fs7_A Uncharacterized protein 99.6 5.6E-14 1.9E-18 149.7 20.8 310 257-661 67-376 (394)
133 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.6E-18 147.6 21.7 155 22-194 64-218 (394)
134 2ell_A Acidic leucine-rich nuc 99.6 9.4E-15 3.2E-19 135.4 11.1 132 5-147 24-160 (168)
135 4b8c_D Glucose-repressible alc 99.6 9.2E-16 3.1E-20 175.6 4.6 117 319-451 210-326 (727)
136 3g39_A Variable lymphocyte rec 99.6 1.2E-14 3.9E-19 134.6 10.4 110 580-692 10-119 (170)
137 2je0_A Acidic leucine-rich nuc 99.5 2E-14 6.8E-19 130.2 10.5 128 4-142 16-148 (149)
138 2r9u_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 131.5 10.5 109 581-692 14-122 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.2E-19 134.0 8.1 134 473-664 14-153 (176)
140 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 126.5 12.1 89 580-668 31-119 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.5 7E-14 2.4E-18 130.5 7.6 132 497-686 14-151 (176)
142 2r9u_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 123.9 12.1 89 580-668 34-122 (174)
143 4gt6_A Cell surface protein; l 99.4 7E-12 2.4E-16 133.4 22.4 327 257-663 59-390 (394)
144 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7E-20 143.9 -5.6 86 580-668 71-157 (198)
145 1ds9_A Outer arm dynein; leuci 99.4 7.7E-15 2.6E-19 140.0 -3.0 136 470-665 40-186 (198)
146 4gt6_A Cell surface protein; l 99.4 2.4E-11 8.4E-16 129.2 21.8 331 273-683 51-386 (394)
147 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.2E-17 137.0 9.7 109 582-693 11-121 (347)
148 2ifg_A High affinity nerve gro 99.3 2.7E-12 9.3E-17 134.3 9.9 113 580-693 32-146 (347)
149 3un9_A NLR family member X1; l 99.2 1.5E-13 5E-18 144.0 -5.0 166 30-198 72-253 (372)
150 3un9_A NLR family member X1; l 99.1 2.7E-12 9.1E-17 134.5 -2.7 165 5-172 72-252 (372)
151 4h09_A Hypothetical leucine ri 99.1 6.1E-09 2.1E-13 110.2 22.3 65 594-659 277-341 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.6E-08 9E-13 105.2 22.3 155 473-685 189-343 (379)
153 2ra8_A Uncharacterized protein 98.7 2E-08 6.8E-13 104.0 7.1 162 3-172 137-320 (362)
154 2ra8_A Uncharacterized protein 98.7 8E-09 2.7E-13 107.0 3.6 83 578-662 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 2.4E-08 8.2E-13 93.2 0.1 13 184-196 151-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2E-12 90.5 2.5 119 26-146 32-163 (185)
157 3rfe_A Platelet glycoprotein I 98.3 9.1E-07 3.1E-11 76.5 5.8 57 607-665 12-69 (130)
158 3rw6_A Nuclear RNA export fact 98.2 1E-06 3.4E-11 86.2 5.7 62 579-641 170-234 (267)
159 3rw6_A Nuclear RNA export fact 98.2 2E-07 6.8E-12 91.2 0.0 100 580-681 142-257 (267)
160 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.7E-11 77.3 2.0 87 30-123 61-153 (176)
161 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.2E-11 76.8 0.7 83 580-662 62-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 9.7E-05 3.3E-09 68.0 3.2 119 26-145 37-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 4.2E-05 1.4E-09 70.4 0.7 116 80-196 39-169 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00058 2E-08 58.7 6.3 80 630-711 11-109 (130)
165 2lz0_A Uncharacterized protein 64.2 8.5 0.00029 30.5 4.6 47 381-428 7-53 (100)
166 2lz0_A Uncharacterized protein 61.1 10 0.00034 30.1 4.5 41 125-167 11-51 (100)
167 2k1k_A Ephrin type-A receptor 43.2 22 0.00074 22.3 2.9 15 723-737 14-28 (38)
168 2jwa_A Receptor tyrosine-prote 37.2 37 0.0013 22.0 3.3 9 725-733 14-22 (44)
169 2l9u_A Receptor tyrosine-prote 37.1 39 0.0014 20.1 3.1 16 725-740 12-27 (40)
170 2klu_A T-cell surface glycopro 31.9 32 0.0011 24.3 2.5 17 724-740 13-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.4e-70 Score=633.09 Aligned_cols=656 Identities=29% Similarity=0.417 Sum_probs=526.5
Q ss_pred CCCCCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCC-CcCCCCCCCcEEeCCCCccccCcchhHHHHh
Q 041867 1 LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHG-QGFPHFKSLEHLGMMSTRIALNTNFLQVISE 79 (776)
Q Consensus 1 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~ 79 (776)
|.++++|+.++++.+.+.. .+.. +..+++|++|+|++|.+.+.+|. ..+.++++|++|++++| .+.+..+..+..
T Consensus 73 l~~L~~L~~l~~~~~~~~~-l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~ 148 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN--TLDFPGKVSGGL 148 (768)
T ss_dssp TTTCTTCCEEECTTSCEEE-CCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS--EEECCSSCCSCC
T ss_pred HhccCcccccCCcCCCcCC-Cchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC--ccCCcCCHHHhc
Confidence 4567888888888876532 3355 88999999999999999876663 25888999999999999 555555555533
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcC---CCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCccccc
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRG---LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLI 156 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~ 156 (776)
++++|++|++++|.+++ ..+ .. +.++++|++|++++|.+++..+ +..+++|++|++++|.+++.+|. +.
T Consensus 149 ~l~~L~~L~Ls~n~l~~---~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~ 220 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISG---ANV-VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LG 220 (768)
T ss_dssp CCTTCSEEECCSSCCEE---ETH-HHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CT
T ss_pred cCCCCCEEECCCCccCC---cCC-hhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cc
Confidence 88999999999999876 333 23 7888999999999999986554 47899999999999999865654 88
Q ss_pred CCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCC-
Q 041867 157 HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ- 235 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 235 (776)
++++|++|++++|.+++.++ ..+..+++|++|++++|.+.+..+.. ...+|+.|++ ..+.+.+.+|..+...
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L-~~n~l~~~ip~~~~~~~ 293 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSL-AENKFTGEIPDFLSGAC 293 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCTTCCEEEC-CSSEEEESCCCCSCTTC
T ss_pred cCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccCCCCEEEC-cCCccCCccCHHHHhhc
Confidence 99999999999999886544 46888999999999999887544432 3458999999 7888888889888775
Q ss_pred CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCC-CCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP-IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
++|++|++++|.+.+.+|..+ +++++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+.+|..+....++|+.
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 999999999999998899886 89999999999999998766654 8899999999999999998999888774349999
Q ss_pred eecccccCccCCCccCCC--CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867 315 FNNSMNALDGSIPSSLGN--MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~ 392 (776)
|++++|.+.+..|..+.. +++|++|++++|.+++.+|..+. .+++|+.|++++| .+++..|..+..
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N-----------~l~~~~p~~l~~ 440 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN-----------YLSGTIPSSLGS 440 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSS-----------EEESCCCGGGGG
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCC-----------cccCcccHHHhc
Confidence 999999999888888877 88999999999999977777665 6999999995555 455678999999
Q ss_pred CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCC
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP 471 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 471 (776)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. +++|++|++++|+ +++.+|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p 507 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-------------LTGEIP 507 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------------CCSCCC
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-------------cCCcCC
Confidence 99999999999999999999999999999999999999988888776 8899999666655 446788
Q ss_pred hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCC----------cchh-
Q 041867 472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS----------LDEQ- 540 (776)
Q Consensus 472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~- 540 (776)
.++..+++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|..+.............. ....
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999887655432211110000 0000
Q ss_pred --hhcccccCCCCCCccccc--cceeeeeecceEE--EeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc
Q 041867 541 --FEIFFSIESPQGNVEKQI--HEIFEFTTKNIVY--IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND 614 (776)
Q Consensus 541 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 614 (776)
.................. ........+.... ......+++|+.|||++|++++.+|..++++++|+.|+|++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 000000000000000000 0000000011100 0111336789999999999999999999999999999999999
Q ss_pred ccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867 615 LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694 (776)
Q Consensus 615 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~ 694 (776)
+++.+|..|+++++|+.|||++|++++.+|+.+..+++|++||+++|+++|.+|.. .++.++...++.|||.+|+.|+.
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999985 78999999999999999999988
Q ss_pred CCCCCCCC
Q 041867 695 ICRSPATM 702 (776)
Q Consensus 695 ~c~~~~~~ 702 (776)
.|......
T Consensus 747 ~C~~~~~~ 754 (768)
T 3rgz_A 747 RCDPSNAD 754 (768)
T ss_dssp CCCSCC--
T ss_pred CCCCCccC
Confidence 88755443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-65 Score=597.69 Aligned_cols=643 Identities=25% Similarity=0.345 Sum_probs=527.4
Q ss_pred CCCcEEECCCCCCCCc---cchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhH--HHHh
Q 041867 5 TNLEYLTLHGSSLHIS---LLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQ--VISE 79 (776)
Q Consensus 5 ~~L~~L~L~~n~~~~~---~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--~~~~ 79 (776)
.+++.|+|+++.+.+. ++.+ +..+++|+.++++.+.+. ..+. .+.++++|++|++++| .+.+..+. .+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~- 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRN--SLSGPVTTLTSLG- 123 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSS--EEEEEGGGGGGGG-
T ss_pred CcEEEEECCCCCcCCccCccChh-HhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCC--cCCCcCCChHHHh-
Confidence 4689999999999987 7777 889999999999999875 3444 7999999999999999 66677776 777
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEeCCCCcCcccCCccccc
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC---MTNLTSLRILDVSSNQLTGSISSSPLI 156 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~~~ 156 (776)
++++|++|++++|.+.+ .++...+.++++|++|+|++|++++..+.. +.++++|++|++++|.+.+.++ +.
T Consensus 124 ~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~ 197 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 197 (768)
T ss_dssp GCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CT
T ss_pred CCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cc
Confidence 99999999999999976 566544588999999999999999887777 8899999999999999985443 48
Q ss_pred CCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCC
Q 041867 157 HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH 236 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (776)
.+++|++|++++|.+.+.++. +..+++|++|++++|.+.+..+..+ ....+|+.|++ ..+.+.+.+|.. .++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L-s~n~l~~~~~~~--~l~ 269 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNI-SSNQFVGPIPPL--PLK 269 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT---TTCSSCCEEEC-CSSCCEESCCCC--CCT
T ss_pred cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH---hcCCCCCEEEC-CCCcccCccCcc--ccC
Confidence 899999999999999876663 8999999999999999886555443 23348999999 777777777765 789
Q ss_pred CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316 (776)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 316 (776)
+|++|++++|.+.+.+|..+...+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|......+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 99999999999998899887555699999999999999888889999999999999999998888887555588999999
Q ss_pred cccccCccCCCccCCCCC-CCCEEEccCCcCCCcCchhhhh-cCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 317 NSMNALDGSIPSSLGNMK-FLQILDLSNNHLTGEIPEHLAV-GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 317 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
+++|.+.+.+|..+..++ +|++|++++|.+.+.+|..... .+++|++|++++| .+++..|..+..++
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-----------~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-----------GFTGKIPPTLSNCS 418 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-----------EEEEECCGGGGGCT
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-----------ccccccCHHHhcCC
Confidence 999999988898888887 8999999999998777776653 2678999995555 45567899999999
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
+|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|++|++++|++ ++.+|.+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-------------~~~~p~~ 485 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-------------TGEIPSG 485 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-------------CSCCCGG
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-------------cCcCCHH
Confidence 999999999999999999999999999999999999988888776 88999997666554 4577888
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCC-CCcchhhhcc-cccCC-C
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNS-SSLDEQFEIF-FSIES-P 550 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~ 550 (776)
+.++++|+.|++++|++++..|..+..+++|++|++++|++.+.+|..+..++..+..... +.+....... +.... .
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 9999999999999999999999999999999999999999999999988887755443322 2222111110 00000 0
Q ss_pred CCCccccccceeeeeecce---------EEEe------ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccc
Q 041867 551 QGNVEKQIHEIFEFTTKNI---------VYIY------QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDL 615 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~---------~~~~------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 615 (776)
...... -........... ...+ ....++.+..++++.|.+.+.+|..+..+++|+.|||++|++
T Consensus 566 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 566 AANFIA-GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp CCSTTC-SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhccc-cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 000000 000000000000 0000 012244566788889999999999999999999999999999
Q ss_pred cccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 616 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.||+++|+++|.+|..+..++.++.+++++|+.....|
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997754433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-60 Score=552.43 Aligned_cols=591 Identities=21% Similarity=0.219 Sum_probs=437.9
Q ss_pred CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867 7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY 86 (776)
Q Consensus 7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~ 86 (776)
-+.+++++++++. +|.. + .+++++|+|++|.+.+..+. .|.++++|++|++++| .+.+..+..+. ++++|++
T Consensus 6 ~~~~~cs~~~L~~-ip~~-~--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~ 77 (680)
T 1ziw_A 6 HEVADCSHLKLTQ-VPDD-L--PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFN--TISKLEPELCQ-KLPMLKV 77 (680)
T ss_dssp SSEEECCSSCCSS-CCSC-S--CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSS--CCCCCCTTHHH-HCTTCCE
T ss_pred CCeeECCCCCccc-cccc-c--CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCC--ccCccCHHHHh-cccCcCE
Confidence 3678888888764 4544 3 27899999999998754443 7888999999999999 56666677777 8999999
Q ss_pred EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEec
Q 041867 87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166 (776)
Q Consensus 87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 166 (776)
|++++|.++. +++..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..+. .+.++++|++|++
T Consensus 78 L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 152 (680)
T 1ziw_A 78 LNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLL 152 (680)
T ss_dssp EECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEEC
T ss_pred EECCCCccCc----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEc
Confidence 9999998875 6666788999999999999999877778899999999999999998844444 7888999999999
Q ss_pred cCCccccccCcccc--cCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccc---cCCCCcCEE
Q 041867 167 SNNHFQIPISLEPL--FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFL---YHQHDLETV 241 (776)
Q Consensus 167 ~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L 241 (776)
++|.+++. +...+ ..+++|++|++++|.+....+..+. ...+|+.+++ ..+.........+ ...++|+.|
T Consensus 153 ~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 153 SNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEFSPGCFH---AIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp CSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCBCTTGGG---GSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred cCCccccc-CHHHhhccccccccEEECCCCcccccChhhhh---hhhhhhhhhc-cccccChhhHHHHHHHhhhccccEE
Confidence 99988743 32333 3568899999999988765443321 2236777777 4443332211111 134788889
Q ss_pred EcCCCCCcccCChHHhhcCC--CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeeccc
Q 041867 242 ELSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM 319 (776)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 319 (776)
++++|.+.+..|.++ .+++ +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.+++++
T Consensus 228 ~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~ 305 (680)
T 1ziw_A 228 SLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKR 305 (680)
T ss_dssp ECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTT
T ss_pred EccCCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccc
Confidence 999888887777665 5554 4899999999888888888888889999999998888666666655 78888888887
Q ss_pred ccCcc-----CCC----ccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867 320 NALDG-----SIP----SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390 (776)
Q Consensus 320 n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~ 390 (776)
|...+ .+| ..|..+++|++|++++|.+. .++...+.++++|++|++++|.+. +....+..|
T Consensus 306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~---------~~~l~~~~f 375 (680)
T 1ziw_A 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTS---------LRTLTNETF 375 (680)
T ss_dssp CBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSC---------CCEECTTTT
T ss_pred hhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchh---------hhhcchhhh
Confidence 65442 222 26778889999999999988 566666678889999998777643 111122223
Q ss_pred cCC--CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCccc
Q 041867 391 GNL--TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRL 466 (776)
Q Consensus 391 ~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l 466 (776)
..+ ++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..+ ..+. +.+|+++++++|++
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l------------- 442 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY------------- 442 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-------------
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-------------
Confidence 322 578888888888887777778888888888888888765443 3443 67788886655544
Q ss_pred cccCChhhccCccCCEEEcccccCC--ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867 467 NGSIPDWVDGLSQLSHLILGHNNLE--GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544 (776)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (776)
.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..+..|..++
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~------------------ 504 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------------------ 504 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------------
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc------------------
Confidence 3455666777888888888888776 45667778888888888888888877776666544
Q ss_pred cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh--------hhhccCccCCeeeccccccc
Q 041867 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP--------PQIGNLTRIQTLNLSHNDLI 616 (776)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~ 616 (776)
+|++|++++|++++..+ ..|.++++|++|+|++|+++
T Consensus 505 -----------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 505 -----------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp -----------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 78888888888774321 23677888888888888888
Q ss_pred ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccc-cccccCcccccCCCCCCCCCC
Q 041867 617 GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL 693 (776)
Q Consensus 617 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~l~~~~~~~n~~~c~~~~ 693 (776)
.+++..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++++.+++++|||.|+|+.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 77767788888888888888888877777778888888888888888877776665 677888888888888888874
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-56 Score=528.43 Aligned_cols=561 Identities=22% Similarity=0.225 Sum_probs=408.3
Q ss_pred cEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcch-hHHHHhcCCCccE
Q 041867 8 EYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNF-LQVISESMPSLKY 86 (776)
Q Consensus 8 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~l~~L~~ 86 (776)
+..+.++++++. +|. ..+++++|+|++|.+.+..+. .|.++++|++|++++| ...+.+ +..+. ++++|++
T Consensus 7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n--~~~~~i~~~~f~-~L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQ--YTPLTIDKEAFR-NLPNLRI 77 (844)
T ss_dssp EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTT--CCCCEECTTTTS-SCTTCCE
T ss_pred eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCC--CCccccCHHHhc-CCCCCCE
Confidence 356667776663 232 446788888888888755554 7888888888888887 333444 44444 7778888
Q ss_pred EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcc--ccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEE
Q 041867 87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC--MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164 (776)
Q Consensus 87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 164 (776)
|+|++|.+.+ +.+..|..+++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+...|+++++|++|
T Consensus 78 L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 78 LDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp EECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred EECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 8888877765 43457777778888888888777655544 77777888888888877744443367777788888
Q ss_pred eccCCccccccCcccccCC--CCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCC------
Q 041867 165 YLSNNHFQIPISLEPLFNH--SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH------ 236 (776)
Q Consensus 165 ~L~~n~l~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------ 236 (776)
++++|.+++..+ ..+..+ ++|+.|+++.|.+.. ..|..+..++
T Consensus 154 ~Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~----------------------------~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 154 DFSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYS----------------------------RVSVDWGKCMNPFRNM 204 (844)
T ss_dssp EEESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCC----------------------------CCCCCCCSSSCTTTTC
T ss_pred ECCCCcCCeeCH-HHcccccCCccceEECCCCcccc----------------------------ccccchhhcCCccccC
Confidence 887777764322 334444 667777776665543 2222222222
Q ss_pred CcCEEEcCCCCCcccCChHHhhcC--CCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc-cCcccc
Q 041867 237 DLETVELSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD-VLPSLY 313 (776)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~l~~L~ 313 (776)
.|+.|++++|.+.+..+..+.... +.++.+.+..+.+... +..+.+.+..+..+.. ..++|+
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCcc
Confidence 489999999988877777653322 4566777664433221 0112222111111111 136888
Q ss_pred eeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCC
Q 041867 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNL 393 (776)
Q Consensus 314 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l 393 (776)
.|++++|.+.+..+..|..+++|+.|++++|.+. .++...+.++++|++|++++|. +++..+..|.++
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~-----------l~~~~~~~~~~l 337 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL-----------LGELYSSNFYGL 337 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCC-----------CSCCCSCSCSSC
T ss_pred EEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCC-----------CCccCHHHhcCC
Confidence 9999999988888888899999999999999998 5655666788999999955554 455678889999
Q ss_pred CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
++|++|++++|.+....+..|..+++|+.|++++|.+.+... +++|+++++++|++. .+|.
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~--------------~l~~- 398 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV--------------TLPK- 398 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC--------------CCCC-
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc--------------cccc-
Confidence 999999999999998888889999999999999999875432 678899988887765 2222
Q ss_pred hccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCC-CcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPC-FDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
...+++.|++++|++++... ..+..+++|+.|++++|++++..+.. +..
T Consensus 399 --~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------- 449 (844)
T 3j0a_A 399 --INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------------------------- 449 (844)
T ss_dssp --CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------
T ss_pred --cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------
Confidence 24678999999999987543 34568999999999999998655432 221
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCC-----CCChhhhccCccCCeeecccccccccCccccCCC
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-----GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL 626 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 626 (776)
+++|+.|++++|.++ +..+..|.++++|+.|+|++|.+++++|..|.++
T Consensus 450 --------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 450 --------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp --------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred --------------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 348999999999997 4556778999999999999999999999999999
Q ss_pred CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC------------
Q 041867 627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------ 694 (776)
Q Consensus 627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~------------ 694 (776)
++|+.|+|++|++++..|..+. ++|+.|++++|++++..|..+ ..+..+++++|||.|+|+..
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~ 578 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVT 578 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTT
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCcc
Confidence 9999999999999987777766 899999999999999888754 57888999999999999752
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCcc
Q 041867 695 --------ICRSPATMSEASIGNERDDNLI 716 (776)
Q Consensus 695 --------~c~~~~~~~~~~~~~~~~~~~~ 716 (776)
.|..|....+.++.......|.
T Consensus 579 ~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp TCCCGGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred cccccccCccCCchhhCCCccccCccccCC
Confidence 5888888877766665555443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-54 Score=496.39 Aligned_cols=564 Identities=21% Similarity=0.220 Sum_probs=458.7
Q ss_pred CEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCC
Q 041867 33 KNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHL 112 (776)
Q Consensus 33 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L 112 (776)
+.++.++++++ .+|. .+. +++++|++++| .+.+..+..+. ++++|++|++++|.+++ +.+..|.++++|
T Consensus 7 ~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 75 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPD-DLP--TNITVLNLTHN--QLRRLPAANFT-RYSQLTSLDVGFNTISK----LEPELCQKLPML 75 (680)
T ss_dssp SEEECCSSCCS-SCCS-CSC--TTCSEEECCSS--CCCCCCGGGGG-GGTTCSEEECCSSCCCC----CCTTHHHHCTTC
T ss_pred CeeECCCCCcc-cccc-ccC--CCCcEEECCCC--CCCCcCHHHHh-CCCcCcEEECCCCccCc----cCHHHHhcccCc
Confidence 57889999886 5665 343 79999999999 55666666666 99999999999999986 545588999999
Q ss_pred CEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcc
Q 041867 113 QELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192 (776)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 192 (776)
++|+|++|+++...+..|+++++|++|++++|.++ .++...|.++++|++|++++|.+++. +...+.++++|++|+++
T Consensus 76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLS 153 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECC
T ss_pred CEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEcc
Confidence 99999999999766678999999999999999998 66655899999999999999999854 44568899999999999
Q ss_pred cCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHh--hcCCCCcEEEccC
Q 041867 193 NNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLL--ENNTKLRQLSLVN 270 (776)
Q Consensus 193 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~L~~ 270 (776)
+|.+.......+.. ....+|+.|++ ..+.+.+..|..+..+++|+.++++++.+.+.....+. -..++|+.|++++
T Consensus 154 ~n~l~~~~~~~~~~-~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 154 NNKIQALKSEELDI-FANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp SSCCCCBCHHHHGG-GTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred CCcccccCHHHhhc-cccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 99987654433211 12247999999 77777888888888999999999999887643332221 1347899999999
Q ss_pred CCCcCcCCCCCCCCCC--cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 041867 271 DSLGGPFRLPIHSHKR--LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348 (776)
Q Consensus 271 n~~~~~~~~~~~~~~~--L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 348 (776)
|.+.+..+..+..++. |+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..|..+++|++|++++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 9999888888887755 999999999998666655554 8899999999999998888899999999999998875443
Q ss_pred --------cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc--CCCcccCCC-
Q 041867 349 --------EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG--PIPVEFCQL- 417 (776)
Q Consensus 349 --------~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l- 417 (776)
.++...+..+++|++|++++| .+.+..+..|.++++|++|++++|.+.. .....|..+
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDN-----------DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSC-----------CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred ccccccccccChhhcccCCCCCEEECCCC-----------ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 222335567888998885544 4556777888999999999999987542 233344433
Q ss_pred -CCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867 418 -DLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL 495 (776)
Q Consensus 418 -~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 495 (776)
++|+.|++++|++.+..+..+. +.+|++|++++|.+.+. ..+..|.++++|+.|++++|++.+..+
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE------------LTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE------------CCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc------------cCcccccCcccccEEecCCCCcceeCh
Confidence 5899999999999988887776 88899997777665421 223678889999999999999998888
Q ss_pred hhhcCCCCCCEEeCCCCccc--CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867 496 VQLCELNQLQLLDLSNNNLH--GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573 (776)
Q Consensus 496 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
..|..+++|+.|++++|.+. +..|..+..++
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~----------------------------------------------- 480 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR----------------------------------------------- 480 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-----------------------------------------------
T ss_pred hhhhcCcccccchhccccccccccCCcccccCC-----------------------------------------------
Confidence 89999999999999999886 45566665543
Q ss_pred ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc--------cccCCCCCCCEEECcCCccCCcCCc
Q 041867 574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP--------STFSNLKHVESLDLSNNKLNGKIPH 645 (776)
Q Consensus 574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~ 645 (776)
+|+.|++++|++++..+..|.++++|++|++++|+++++.+ ..|.++++|+.|+|++|+++.+.+.
T Consensus 481 ------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 481 ------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp ------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 89999999999999888999999999999999999997633 2378899999999999999966667
Q ss_pred cccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCC
Q 041867 646 QLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 688 (776)
Q Consensus 646 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~ 688 (776)
.|..+++|+.|++++|++++..+..+..++.++.+++++|...
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 8999999999999999999877777888999999999999653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-54 Score=493.17 Aligned_cols=560 Identities=19% Similarity=0.213 Sum_probs=350.9
Q ss_pred CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867 7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY 86 (776)
Q Consensus 7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~ 86 (776)
-++++.++..++ .+|.. + .+++++|++++|.+.+..+. +|.++++|++|++++| .+.+..+..+. ++++|++
T Consensus 14 ~~~~~c~~~~l~-~iP~~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~l~~L~~ 85 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGT-L--PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRC--QIYWIHEDTFQ-SQHRLDT 85 (606)
T ss_dssp TTEEECTTSCCS-SCCTT-S--CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred CceEECCCCCcc-cCcCC-C--CCcCcEEEccCCccCcCChh-HhccCccceEEECCCC--ccceeChhhcc-CccccCe
Confidence 346777777766 34544 2 34789999999999855554 8899999999999999 55666677777 8999999
Q ss_pred EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEec
Q 041867 87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166 (776)
Q Consensus 87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 166 (776)
|++++|.+.+ +.+..|+++++|++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 86 L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 86 LVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp EECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEEC
T ss_pred eeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEc
Confidence 9999998875 44458889999999999999998777788999999999999999988 443224566899999999
Q ss_pred cCCccccccCcccccCCCCCc--EEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867 167 SNNHFQIPISLEPLFNHSRLK--TFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS 244 (776)
Q Consensus 167 ~~n~l~~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 244 (776)
++|.+++ ++...+..+++|+ .|++++|.+....+.. ....+|+.|+++
T Consensus 161 ~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-----------------------------~~~~~L~~L~l~ 210 (606)
T 3t6q_A 161 QNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-----------------------------FDSAVFQSLNFG 210 (606)
T ss_dssp CSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTT-----------------------------TTTCEEEEEECT
T ss_pred ccCcccc-cChhhhhhhcccceeEEecCCCccCccChhH-----------------------------hhhccccccccC
Confidence 9998873 4445677888888 7888888776433221 122355666666
Q ss_pred CCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867 245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324 (776)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 324 (776)
++. .++.. +.++..++...+.-..+.. +...+++...+ ..+.. .+|+.+++++|.+.+
T Consensus 211 ~~~---~~~~~-~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~-----~~l~~--~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 211 GTQ---NLLVI-FKGLKNSTIQSLWLGTFED-----------MDDEDISPAVF-----EGLCE--MSVESINLQKHYFFN 268 (606)
T ss_dssp TCS---CHHHH-HHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGG-----GGGGG--SEEEEEECTTCCCSS
T ss_pred Cch---hHHHH-hhhccccchhheechhhcc-----------ccccccChhHh-----chhhc--CceeEEEeecCccCc
Confidence 554 12222 2344444333332221111 11011111100 01110 145555555555554
Q ss_pred CCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCC
Q 041867 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404 (776)
Q Consensus 325 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 404 (776)
..+..|..+++|++|++++|.++ .+|..+. ++++|++|++++|+ +.+..|..+..+++|++|++++|
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~-----------l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANK-----------FENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCC-----------CSBGGGGCGGGCTTCSEEECCSC
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCC-----------cCcCchhhhhccCcCCEEECCCC
Confidence 44444555555555555555555 4554432 35555555533332 22334444555555555555555
Q ss_pred ccccCCC-cccCCCCCCcEEEccccccCCCC--CCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccC
Q 041867 405 HLEGPIP-VEFCQLDLLQILDISDNNISGSL--PSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQL 480 (776)
Q Consensus 405 ~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L 480 (776)
.+.+..+ ..+..+++|++|++++|.+.+.. +..+. +++|++|++++|++ .+..|..|..+++|
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-------------LSLKTEAFKECPQL 402 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-------------EEECTTTTTTCTTC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-------------CcCCHHHhcCCccC
Confidence 5543332 23555555555555555555432 22222 45555554444332 23445556666677
Q ss_pred CEEEcccccCCccchh-hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867 481 SHLILGHNNLEGEVLV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH 559 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (776)
+.|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..++
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------- 449 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--------------------------------- 449 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT---------------------------------
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC---------------------------------
Confidence 7777777766655443 366667777777777777666666555433
Q ss_pred ceeeeeecceEEEeccccccccceEEccCCcCCCC---ChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867 560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP---IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636 (776)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 636 (776)
+|++|++++|++.+. .+..+..+++|++|++++|++++..|..|.++++|+.|++++
T Consensus 450 --------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 450 --------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp --------------------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred --------------------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 677777777776642 234577777777777777777777777777777777777777
Q ss_pred CccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC-------------------CCCC
Q 041867 637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-------------------PICR 697 (776)
Q Consensus 637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~-------------------~~c~ 697 (776)
|++++..|+.+..++.| .|++++|++++..|..+..+++++.+++++|||.|+|+. ..|.
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~ 588 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE 588 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEE
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeC
Confidence 77777777777777777 777777777777676667777777777777777777763 1587
Q ss_pred CCCCCCCCCCCCCC
Q 041867 698 SPATMSEASIGNER 711 (776)
Q Consensus 698 ~~~~~~~~~~~~~~ 711 (776)
.|....|..+...+
T Consensus 589 ~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 589 NPPLLRGVRLSDVT 602 (606)
T ss_dssp ESGGGTTCBGGGCC
T ss_pred CchHhCCCeeeeee
Confidence 78777776555443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-54 Score=491.56 Aligned_cols=530 Identities=19% Similarity=0.167 Sum_probs=333.0
Q ss_pred CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867 7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY 86 (776)
Q Consensus 7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~ 86 (776)
-++++.++++++. +|.. + .+++++|++++|.+.+..+. .|.++++|++|++++| .+.+..+..+. ++++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~-~--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~l~~i~~~~~~-~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDD-I--PSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRC--EIETIEDKAWH-GLHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSS-CCTT-S--CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred CCceEccCCCccc-CCCC-C--CCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCC--cccccCHHHhh-chhhcCE
Confidence 4578888888774 4544 2 37899999999999855554 7899999999999999 55666666666 8999999
Q ss_pred EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcc-cCCcccccCCCCCCEEe
Q 041867 87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTG-SISSSPLIHLTSIEKLY 165 (776)
Q Consensus 87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~ 165 (776)
|++++|.+++ +.+..|+++++|++|++++|++++..+..|+++++|++|++++|.+++ .+|. .|.++++|++|+
T Consensus 85 L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~ 159 (606)
T 3vq2_A 85 LILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVD 159 (606)
T ss_dssp EECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEE
T ss_pred eECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEE
Confidence 9999999876 544589999999999999999987777889999999999999999874 4566 889999999999
Q ss_pred ccCCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEE
Q 041867 166 LSNNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETV 241 (776)
Q Consensus 166 L~~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 241 (776)
+++|.+++ ++...+..+.+| ++|++++|.+.... .......+|+.|
T Consensus 160 Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~-----------------------------~~~~~~~~L~~L 209 (606)
T 3vq2_A 160 LSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQ-----------------------------DQAFQGIKLHEL 209 (606)
T ss_dssp CCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEEC-----------------------------TTTTTTCEEEEE
T ss_pred ccCCccee-cChhhhhhhhccccccceeeccCCCcceeC-----------------------------cccccCceeeee
Confidence 99998874 333445544444 47888877765322 122223367777
Q ss_pred EcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcC------CCCCCCCC--CcCEEEc-eeccCcccCChhhhccCccc
Q 041867 242 ELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF------RLPIHSHK--RLGMLDI-SNNNFRGHIPIEIGDVLPSL 312 (776)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~------~~~~~~~~--~L~~L~l-s~n~l~~~~~~~~~~~l~~L 312 (776)
++++|.+.+......+++++.++.+.+..+.+.... ...+..+. .++.+++ ..+.+.+.+|. + ..+++|
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L 287 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANV 287 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTC
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-c-ccCCCC
Confidence 777777664333333467777777776544332211 11111111 3455555 45556655554 3 336778
Q ss_pred ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392 (776)
Q Consensus 313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~ 392 (776)
+.+++++|.+. .+| .+..+++|++|++++|.+. .+|. + .+++|+.|++++|+.. .+..+..
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~-------------~~~~~~~ 348 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGS-------------ISFKKVA 348 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSC-------------EECCCCC
T ss_pred CEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C--CCCccceeeccCCcCc-------------cchhhcc
Confidence 88888877776 344 6777778888888888874 7773 2 5778888886666432 1124556
Q ss_pred CCCCCEEeccCCccccC--CCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 393 LTWLQYIIMPNNHLEGP--IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.......+++|++|++++|++. +..
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~ 415 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK-------------RVT 415 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE-------------STT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC-------------Ccc
Confidence 77888888888877755 366777777888888887777654322222455555544443332 222
Q ss_pred C-hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 471 P-DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 471 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+ ..|..+..++
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---------------------- 473 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT---------------------- 473 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC----------------------
Confidence 2 344555555555555555555555555555555555555555544 2344443322
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++
T Consensus 474 -------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 474 -------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp -------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred -------------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 4555555555555555555555555555555555555555555555555
Q ss_pred CCEEECcCCccCCcCCccccCCC-CCCEEecccccCcccC
Q 041867 629 VESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEI 667 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~ 667 (776)
|++|++++|+++ .+|..+..++ +|+.|++++|++.|..
T Consensus 523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 555555555554 3333344443 3555555555555433
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-53 Score=484.27 Aligned_cols=524 Identities=20% Similarity=0.184 Sum_probs=400.9
Q ss_pred CCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCc
Q 041867 5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSL 84 (776)
Q Consensus 5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L 84 (776)
+++++|+|++|.+++..+.+ +.++++|++|+|++|.+.+..|. +|.++++|++|++++| .+.+..+..+. ++++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTAN--PLIFMAETALS-GPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTC--CCSEECTTTTS-SCTTC
T ss_pred CcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChh-hccCccccCeeeCCCC--cccccChhhhc-ccccc
Confidence 47999999999999877777 99999999999999999866665 8999999999999999 66666677777 99999
Q ss_pred cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC--
Q 041867 85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE-- 162 (776)
Q Consensus 85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~-- 162 (776)
++|++++|.+++ +.+..++++++|++|++++|++++.....+..+++|++|++++|.++ .++...+..+++|+
T Consensus 108 ~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 108 KHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNL 182 (606)
T ss_dssp CEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSE
T ss_pred cEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhccccee
Confidence 999999999986 54557999999999999999999755455666999999999999998 55554899999999
Q ss_pred EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867 163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242 (776)
Q Consensus 163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 242 (776)
+|++++|.+.+..+ . ......|++|++++|........ ......++.+.+. .+..+...
T Consensus 183 ~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~--------------~~~~~~~~- 241 (606)
T 3t6q_A 183 SLNLNGNDIAGIEP-G-AFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLG--------------TFEDMDDE- 241 (606)
T ss_dssp EEECTTCCCCEECT-T-TTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECC--------------CCTTSCCC-
T ss_pred EEecCCCccCccCh-h-HhhhccccccccCCchhHHHHhh----hccccchhheech--------------hhcccccc-
Confidence 89999999985433 3 34456899999988762111000 0011122222220 01111111
Q ss_pred cCCCCCcccCChHHhhcCC--CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867 243 LSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320 (776)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 320 (776)
.++...+.++. +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+.. +++|++|++++|
T Consensus 242 --------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n 311 (606)
T 3t6q_A 242 --------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSAN 311 (606)
T ss_dssp --------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTC
T ss_pred --------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccC
Confidence 12222223332 6778888888888777777888888888888888777 66665544 677777777777
Q ss_pred cCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCC--CccccCCCCCCE
Q 041867 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKI--PRWLGNLTWLQY 398 (776)
Q Consensus 321 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~--~~~~~~l~~L~~ 398 (776)
.+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+. +.. +..+..+++|++
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-----------TSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-----------EEEESTTTTTTCTTCCE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-----------cccCcchhcccCCCCCE
Confidence 7776666677777777777777777776677666666777777775555543 222 455667777777
Q ss_pred EeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCc
Q 041867 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS 478 (776)
Q Consensus 399 L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~ 478 (776)
|++++|.+.+..+..|..+++|+.|++++|.+.+.. .+..+..++
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------------------~~~~~~~l~ 425 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----------------------------------AQSPFQNLH 425 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----------------------------------TCCTTTTCT
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----------------------------------cchhhhCcc
Confidence 777777777666777777777777777777665322 223467788
Q ss_pred cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCC---CCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI---PPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555 (776)
Q Consensus 479 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (776)
+|+.|++++|.+++..+..+..+++|++|++++|++.+.. +..+..
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------------------------- 474 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------------------------- 474 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------------------------
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------------------------
Confidence 9999999999998888888999999999999999987522 122333
Q ss_pred ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECc
Q 041867 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635 (776)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 635 (776)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|.++++| .|+++
T Consensus 475 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 475 ----------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp ----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred ----------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 4489999999999998889999999999999999999999999999999999 99999
Q ss_pred CCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 636 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 636 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
+|++++..|+.+..+++|+.|++++|++.|..+.
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999986663
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=483.31 Aligned_cols=522 Identities=21% Similarity=0.190 Sum_probs=373.5
Q ss_pred CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867 4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS 83 (776)
Q Consensus 4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~ 83 (776)
.++|++|+|++|.+++..+.+ +.++++|++|+|++|...+.++..+|.++++|++|++++| .+.+..+..+. ++++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N--~l~~~~p~~~~-~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--KIYFLHPDAFQ-GLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC--CCCEECTTSSC-SCSS
T ss_pred CCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC--cCcccCHhHcc-CCcc
Confidence 478999999999999877777 9999999999999997766775558999999999999999 66677777777 9999
Q ss_pred ccEEEccCCCCCCCCCCcCC-cCCCCCCCCCEEEccCCccccccC-ccccCCCCCCEEeCCCCcCcccCCcccccCC--C
Q 041867 84 LKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHL--T 159 (776)
Q Consensus 84 L~~L~L~~n~i~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~ 159 (776)
|++|+|++|.+.+ .++. ..|.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+ +
T Consensus 99 L~~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~ 174 (844)
T 3j0a_A 99 LFELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGK 174 (844)
T ss_dssp CCCEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHC
T ss_pred cCEeeCcCCCCCc---ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCC
Confidence 9999999999976 4443 248999999999999999987654 6799999999999999999855554 77777 8
Q ss_pred CCCEEeccCCccccccCcccccCCC------CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCcccc
Q 041867 160 SIEKLYLSNNHFQIPISLEPLFNHS------RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLY 233 (776)
Q Consensus 160 ~L~~L~L~~n~l~~~~~~~~l~~l~------~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 233 (776)
+|+.|+++.|.+.+..+. .+..++ .|++|++++|.+.. ..+..+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~----------------------------~~~~~~~ 225 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTV----------------------------DITGNFS 225 (844)
T ss_dssp SSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSST----------------------------TTTSGGG
T ss_pred ccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCch----------------------------hHHHHHH
Confidence 999999999999865443 233333 37777777665542 2222222
Q ss_pred ---CCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCC--CCcCEEEceeccCcccCChhhhcc
Q 041867 234 ---HQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSH--KRLGMLDISNNNFRGHIPIEIGDV 308 (776)
Q Consensus 234 ---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~ 308 (776)
....++.+.++.+...... ..+.+.+.....|..+ ++|+.|++++|.+.+..+..+..
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~- 288 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET- 288 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-
T ss_pred hhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-
Confidence 2357888888744332111 1111222222222222 44555555555555333333322
Q ss_pred CcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR 388 (776)
Q Consensus 309 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~ 388 (776)
+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+.|++++|. +.+..+.
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-----------i~~~~~~ 356 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNH-----------IAIIQDQ 356 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCC-----------CCCCCSS
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCC-----------CCccChh
Confidence 555666666666665555556666666666666666665 4433444456666666644333 3344555
Q ss_pred cccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccc
Q 041867 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNG 468 (776)
Q Consensus 389 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~ 468 (776)
.|..+++|++|++++|.+++. ..+++|+.|++++|++...... ..+++.+++++|++.+.
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------ 416 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------ 416 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------
T ss_pred hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccC------------
Confidence 666677777777777766632 2266677777777777643222 34566776666655421
Q ss_pred cCChhhccCccCCEEEcccccCCccchh-hhcCCCCCCEEeCCCCcccCCCC-----CCCcCCcccccccCCCCcchhhh
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLV-QLCELNQLQLLDLSNNNLHGPIP-----PCFDNTTLYESYSNSSSLDEQFE 542 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 542 (776)
..+..+.++++|+.|++++|++++..+. .+..+++|+.|++++|.+....+ ..|..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~------------------ 478 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG------------------ 478 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC------------------
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC------------------
Confidence 1223456889999999999999865443 45668999999999999974443 23333
Q ss_pred cccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccc
Q 041867 543 IFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622 (776)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 622 (776)
+++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++++..
T Consensus 479 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 479 -----------------------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp -----------------------------------BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred -----------------------------------cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 348999999999999999999999999999999999999988888
Q ss_pred cCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 623 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
+. ++|+.|+|++|++++..|+.|. +|+.|++++|++.|.++.
T Consensus 524 ~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 524 LP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred hh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 77 8999999999999999987764 799999999999986653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-50 Score=460.88 Aligned_cols=514 Identities=19% Similarity=0.204 Sum_probs=354.9
Q ss_pred CCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCc
Q 041867 5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSL 84 (776)
Q Consensus 5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L 84 (776)
++|++|+|++|++++..+.. +.++++|++|++++|.+.+..+. +|.++++|++|++++| .+.+..+..+. ++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n--~l~~~~p~~~~-~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGN--PIQSFSPGSFS-GLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTC--CCCCCCTTSST-TCTTC
T ss_pred CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCC--cccccChhhcC-CcccC
Confidence 67999999999998776666 99999999999999999865555 8999999999999999 56666677777 99999
Q ss_pred cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC-
Q 041867 85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE- 162 (776)
Q Consensus 85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~- 162 (776)
++|++++|.+.+ +++..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ++...+..+++|+
T Consensus 107 ~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 107 ENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQ 181 (606)
T ss_dssp CEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTT
T ss_pred CEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhcccc
Confidence 999999999986 555579999999999999999986 469999999999999999999984 4443677766655
Q ss_pred ---EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867 163 ---KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239 (776)
Q Consensus 163 ---~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 239 (776)
+|++++|.++ .++...+... +|++|++++|.+.... .|..+..++.++
T Consensus 182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~---------------------------~~~~~~~l~~L~ 232 (606)
T 3vq2_A 182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNI---------------------------MKTCLQNLAGLH 232 (606)
T ss_dssp CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHH---------------------------HHHHHHTTTTCE
T ss_pred ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhH---------------------------HHHHhccccccc
Confidence 8999999998 3444444444 8999999998775321 122222333333
Q ss_pred EEEcCCCCCcc-----cCChHHhhcCC--CCcEEEc-cCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcc
Q 041867 240 TVELSHIKMNG-----EFPTWLLENNT--KLRQLSL-VNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311 (776)
Q Consensus 240 ~L~l~~~~~~~-----~~~~~~~~~l~--~L~~L~L-~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 311 (776)
.+++....+.+ .++...+.++. .++.+.+ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+.. +++
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~-~~~ 308 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPK-HFK 308 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCT-TCC
T ss_pred cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccc-ccc
Confidence 33322111100 01111111111 2333333 33444444333 455555555555555554 333 2222 445
Q ss_pred cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391 (776)
Q Consensus 312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~ 391 (776)
|+.|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|.+.+. +..+..+.
T Consensus 309 L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~---------~~~~~~~~ 373 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFS---------GCCSYSDL 373 (606)
T ss_dssp CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEE---------EECCHHHH
T ss_pred CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCC---------cchhhhhc
Confidence 55555555555 2444 23 5555556665555433222 122455566665444443210 01244555
Q ss_pred CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCcccccc
Q 041867 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGS 469 (776)
Q Consensus 392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~ 469 (776)
.+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..+ ..+. +++|++|++++|.+ .+.
T Consensus 374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~ 439 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------------KID 439 (606)
T ss_dssp CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC-------------EEC
T ss_pred cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC-------------Ccc
Confidence 56666666666666553 33555666666666666666655544 2332 55666664444433 235
Q ss_pred CChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 470 IPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
.|..+.++++|+.|++++|.+++ ..+..+..+++|++|++++|++++..|..+..++
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------- 497 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH---------------------- 497 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc----------------------
Confidence 66778899999999999999997 4788899999999999999999998888887654
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCC-
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK- 627 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~- 627 (776)
+|++|++++|++++..|..|..+++|++|+|++|+++.+ |..+..++
T Consensus 498 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~ 545 (606)
T 3vq2_A 498 -------------------------------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPK 545 (606)
T ss_dssp -------------------------------TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCT
T ss_pred -------------------------------cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcc
Confidence 899999999999999999999999999999999999955 55588887
Q ss_pred CCCEEECcCCccCCcCC
Q 041867 628 HVESLDLSNNKLNGKIP 644 (776)
Q Consensus 628 ~L~~L~Ls~N~l~~~~~ 644 (776)
+|+.|++++|++....+
T Consensus 546 ~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCCEEECCSCCCCCSST
T ss_pred cCcEEEccCCCcccCCc
Confidence 69999999999985444
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=423.97 Aligned_cols=276 Identities=20% Similarity=0.238 Sum_probs=202.4
Q ss_pred CCEEEccCC-cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCccc
Q 041867 336 LQILDLSNN-HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF 414 (776)
Q Consensus 336 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 414 (776)
++.++++++ .+.+.++.. +..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.
T Consensus 259 l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~------------~l~~~~~~~-~L~~L~l~~n~~~-~l~~-- 321 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIE------------RVKDFSYNF-GWQHLELVNCKFG-QFPT-- 321 (570)
T ss_dssp EEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEEC------------SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred hhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccch------------hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence 344555555 444333332 334666666665554433 355555556 6777777777666 3332
Q ss_pred CCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccc
Q 041867 415 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 494 (776)
Q Consensus 415 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 494 (776)
..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. ..+..+.++++|+.|++++|.+.+..
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG-----------CCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE-----------EEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc-----------cccccccccCccCEEECCCCcccccc
Confidence 3566677777777776654443 34667777766666544210 12567888899999999999888765
Q ss_pred hhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867 495 LVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573 (776)
Q Consensus 495 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
+. +..+++|++|++++|++.+..+ ..+..+
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------------------------------------------ 420 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL------------------------------------------------ 420 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTC------------------------------------------------
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcC------------------------------------------------
Confidence 55 8889999999999998887655 344443
Q ss_pred ccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccc-ccCccccCCCCCCCEEECcCCccCCcCCccccCCCC
Q 041867 574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 652 (776)
Q Consensus 574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 652 (776)
++|++|++++|.+.+..|..+.++++|++|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++
T Consensus 421 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 421 -----RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp -----TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 37899999999998888888999999999999999987 467888899999999999999999888888999999
Q ss_pred CCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867 653 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694 (776)
Q Consensus 653 L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~ 694 (776)
|+.|++++|++++..|..+..++.++.+++++||+.|+|+..
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999888887888889999999999999998753
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=424.57 Aligned_cols=509 Identities=19% Similarity=0.180 Sum_probs=342.7
Q ss_pred CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867 7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY 86 (776)
Q Consensus 7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~ 86 (776)
.++.+.++.+++. +|.. + .+++++|++++|.+.+..+. +|.++++|++|++++| .+.+..+..+. ++++|++
T Consensus 9 ~~~~~c~~~~l~~-ip~~-l--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~i~~i~~~~~~-~l~~L~~ 80 (570)
T 2z63_A 9 NITYQCMELNFYK-IPDN-L--PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLST 80 (570)
T ss_dssp TTEEECCSSCCSS-CCSS-S--CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred CcEEEeCCCCccc-cCCC-c--cccccEEEccCCccCccChh-HhhCCCCceEEECCCC--cCCccCccccc-CchhCCE
Confidence 3456666666553 4433 2 35788888888888754443 7888888888888888 55555555555 7888888
Q ss_pred EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcc-cCCcccccCCCCCCEEe
Q 041867 87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTG-SISSSPLIHLTSIEKLY 165 (776)
Q Consensus 87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~ 165 (776)
|++++|.+++ +++..|..+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|. .|.++++|++|+
T Consensus 81 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~ 155 (570)
T 2z63_A 81 LILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLD 155 (570)
T ss_dssp EECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEE
T ss_pred EeCcCCcCCc----cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEe
Confidence 8888888865 555578888888888888888886655568888888888888888874 3455 788888888888
Q ss_pred ccCCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEE
Q 041867 166 LSNNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETV 241 (776)
Q Consensus 166 L~~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 241 (776)
+++|.+++ ++...+..+++| +++++++|.+....+.. +.. .+|+.|
T Consensus 156 l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----------------------------~~~-~~L~~L 205 (570)
T 2z63_A 156 LSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----------------------------FKE-IRLHKL 205 (570)
T ss_dssp CTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----------------------------TTT-CEEEEE
T ss_pred CcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHH----------------------------hcc-CcceeE
Confidence 88888773 343456666666 67777777665432221 111 145555
Q ss_pred EcCCCCCccc-CChHHhhcCCCCcEEEccCCCCc------CcCCCCCCCCC--CcCEEEceec-cCcccCChhhhccCcc
Q 041867 242 ELSHIKMNGE-FPTWLLENNTKLRQLSLVNDSLG------GPFRLPIHSHK--RLGMLDISNN-NFRGHIPIEIGDVLPS 311 (776)
Q Consensus 242 ~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~~~~~--~L~~L~ls~n-~l~~~~~~~~~~~l~~ 311 (776)
++++|..... ++.. +.+++.++.+.+....+. ......+..++ .++.++++++ .+.+..+..+.. +++
T Consensus 206 ~l~~n~~~~~~~~~~-~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~ 283 (570)
T 2z63_A 206 TLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTN 283 (570)
T ss_dssp EEESCCSCTTHHHHH-HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTT
T ss_pred ecccccccccchhhh-hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCc
Confidence 5555433221 2222 245555544443321111 11111122222 2344555554 444444444433 556
Q ss_pred cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391 (776)
Q Consensus 312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~ 391 (776)
|+.+++++|.+. .+|..+..+ +|++|++++|.+. .+|.. .+++|+.|++++|.+. +..+. .
T Consensus 284 L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~-----------~~~~~--~ 344 (570)
T 2z63_A 284 VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG-----------NAFSE--V 344 (570)
T ss_dssp CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSC-----------CBCCC--C
T ss_pred ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCccc-----------ccccc--c
Confidence 666666666655 345555555 6666666666665 55542 3556666664444332 12221 4
Q ss_pred CCCCCCEEeccCCccccCC--CcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccccc
Q 041867 392 NLTWLQYIIMPNNHLEGPI--PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS 469 (776)
Q Consensus 392 ~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~ 469 (776)
.+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------------------- 387 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------------------------- 387 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------------------------------------
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------------------------------------
Confidence 4556666666666655432 4445555556666555555442
Q ss_pred CChhhccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 470 IPDWVDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
.+..+.++++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..++
T Consensus 388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------- 445 (570)
T 2z63_A 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------------------- 445 (570)
T ss_dssp EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT----------------------
T ss_pred ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC----------------------
Confidence 22236778889999999998887655 5688899999999999999888887776644
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 627 (776)
+|++|++++|.+. +.+|..+..+++|++|++++|++++..|..|..++
T Consensus 446 -------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 446 -------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp -------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -------------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 8999999999987 56888999999999999999999999999999999
Q ss_pred CCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
+|+.|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999998888999999999999999999998886
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.4e-46 Score=425.20 Aligned_cols=550 Identities=19% Similarity=0.169 Sum_probs=318.7
Q ss_pred EEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEE
Q 041867 9 YLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLS 88 (776)
Q Consensus 9 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~ 88 (776)
+.+-++-+++ .+|.. + .+++++|+|++|.|++ ++..+|.++++|++|++++| .+.+..+.++. ++++|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~-l--p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~-~L~~L~~L~ 106 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLSTLI 106 (635)
T ss_dssp EEECTTSCCS-SCCSS-S--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC--CCCEECTTTTT-TCTTCCEEE
T ss_pred EEECCCCCcC-ccCCC-C--CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC--cCCCcChhHhc-CCCCCCEEE
Confidence 3444444444 23433 2 2578999999999974 44448999999999999999 55555555555 899999999
Q ss_pred ccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCccc-CCcccccCCCCCCEEecc
Q 041867 89 LSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-ISSSPLIHLTSIEKLYLS 167 (776)
Q Consensus 89 L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~l~~L~~L~L~ 167 (776)
|++|+++. +++..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. +|. .+..+++|++|+++
T Consensus 107 Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 107 LTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS 181 (635)
T ss_dssp CTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECC
T ss_pred ccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhccc
Confidence 99999875 6666788999999999999999877777899999999999999998742 344 77889999999999
Q ss_pred CCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867 168 NNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243 (776)
Q Consensus 168 ~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 243 (776)
+|.+++ +....+..+.++ ..++++.|.+..... .......++.+++
T Consensus 182 ~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-----------------------------~~~~~~~~~~l~l 231 (635)
T 4g8a_A 182 SNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-----------------------------GAFKEIRLHKLTL 231 (635)
T ss_dssp SSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECT-----------------------------TTTTTCEEEEEEE
T ss_pred Cccccc-cccccccchhhhhhhhhhhhcccCcccccCc-----------------------------ccccchhhhhhhh
Confidence 998874 333344433332 356666665543211 1122234455666
Q ss_pred CCCCCcccCChHHhhcCCCCcEEEccCCCC------cCcCCCCCCCCCCcCEEEceeccCccc---CChhhhccCcccce
Q 041867 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSL------GGPFRLPIHSHKRLGMLDISNNNFRGH---IPIEIGDVLPSLYL 314 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~~l~~L~~ 314 (776)
.++......+...+.+++.++...+..+.. .......+.....+...++..+..... .... .....+++.
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~ 310 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSS 310 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhccccc
Confidence 665544344444445666666555533221 222223333444445454444332211 1111 112345555
Q ss_pred eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
+.+..+.+... ..+....+++.|++.+|.+. .++.. .+..|+.++++.|... .+.....++
T Consensus 311 l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~-------------~~~~~~~l~ 371 (635)
T 4g8a_A 311 FSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG-------------NAFSEVDLP 371 (635)
T ss_dssp EEEESCEEEEC--GGGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSC-------------CBCCCCBCT
T ss_pred ccccccccccc--cccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCC-------------CCccccccc
Confidence 55555554432 22344455666666666554 33321 2445555554444322 112233456
Q ss_pred CCCEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 395 WLQYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 395 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
+|+.+++++|.+.. ..+..+..+.+|+.++++.|........
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~------------------------------------ 415 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN------------------------------------ 415 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC------------------------------------
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhcccccccccccc------------------------------------
Confidence 66666666665542 2334445555666666666555433332
Q ss_pred hhccCccCCEEEcccccCCccc-hhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEV-LVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
+..+++|+.+++.+++..... ...|..+++++.+++++|.+.+..+..+..++
T Consensus 416 -~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~------------------------- 469 (635)
T 4g8a_A 416 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------------------------- 469 (635)
T ss_dssp -CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------------
T ss_pred -ccccccccchhhhhccccccccccccccccccccccccccccccccccccccch-------------------------
Confidence 344455555555544433222 23345555555555555555544444443322
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 630 (776)
.++.|++++|.+. +..|..|..+++|++|+|++|++++++|..|.++++|+
T Consensus 470 ----------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 470 ----------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp ----------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ----------------------------hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 4555555555432 23455555666666666666666666666666666666
Q ss_pred EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc-cccCcccccCCCCCCCCCC----------------
Q 041867 631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL---------------- 693 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~---------------- 693 (776)
+|+|++|+|++..|..|..+++|++||+++|+|++..|..+..+ ++++.+++++|||.|+|++
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~ 601 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 601 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCC
Confidence 66666666665555556666666666666666666555555554 3466666666666666643
Q ss_pred ---CCCCCCCCCCCCCCCCCC
Q 041867 694 ---PICRSPATMSEASIGNER 711 (776)
Q Consensus 694 ---~~c~~~~~~~~~~~~~~~ 711 (776)
..|..|...+|.++..++
T Consensus 602 ~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 602 VERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp GGGCBBCSSTTTTTCBGGGCC
T ss_pred CCCceeCCchHHCCCEeeeec
Confidence 269999988888776664
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-45 Score=415.20 Aligned_cols=493 Identities=18% Similarity=0.195 Sum_probs=341.7
Q ss_pred cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEE
Q 041867 85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164 (776)
Q Consensus 85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 164 (776)
.+.+.+++.++. +|. .+. ++|++|++++|++++..|..|.++++|++|++++|.++ .++...|.++++|++|
T Consensus 8 ~~c~~~~~~l~~----ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 8 GVCDGRSRSFTS----IPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHL 79 (549)
T ss_dssp SEEECTTSCCSS----CCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred ceEECCCCcccc----ccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEE
Confidence 334555555543 333 221 45666666666666555556666666666666666665 3333356666666666
Q ss_pred eccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS 244 (776)
Q Consensus 165 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 244 (776)
++++|.+++ .+...+.++++|++|++++|.+... ..|..+..+++|++|+++
T Consensus 80 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 80 DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp ECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEE
T ss_pred ECCCCccCc-cCHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECC
Confidence 666666552 3333455666666666665554310 123345566667777777
Q ss_pred CCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867 245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324 (776)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 324 (776)
+|...+.+|...+.++++|++|++++|.+.+..+..+..+++|+.|+++.|.+. .+|..+...+++|+.|++++|.+.+
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 766444555433467788888888888888777778888888888888888776 5555555557888888888888875
Q ss_pred CC--C-ccCCCCCCCCEEEccCCcCCCcCchhhh---hcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE
Q 041867 325 SI--P-SSLGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY 398 (776)
Q Consensus 325 ~~--~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~ 398 (776)
.. + .....+++|+.|++++|.+.+..+..+. ..+++|+.+++++|.+.+.-+ +.......+..+++|+.
T Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FNPSESDVVSELGKVET 285 (549)
T ss_dssp CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CCCCTTTCCCCCTTCCE
T ss_pred ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----ccccchhhhhhhccccc
Confidence 32 1 2234578899999999988755444332 356789999988877653111 11112234567888999
Q ss_pred EeccCCccccC-----CCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 399 IIMPNNHLEGP-----IPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 399 L~l~~n~i~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
|++.++.+... .+..+....+|+.|++++|.+...+...+. +++|++|++++|++.+..+. .+.
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~ 355 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK----------NSA 355 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH----------HHT
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc----------chh
Confidence 99988876532 122233456899999999998755444443 78999998887776543221 023
Q ss_pred hhccCccCCEEEcccccCCccch--hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVL--VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (776)
.+..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------- 408 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-------------------------- 408 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC--------------------------
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc--------------------------
Confidence 36788999999999999987653 56889999999999999998 45555544
Q ss_pred CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 630 (776)
+++|++|++++|.+++ +|..+. ++|++|++++|++++.+ ..+++|+
T Consensus 409 ---------------------------~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 409 ---------------------------PEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp ---------------------------CTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred ---------------------------cccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhc
Confidence 3489999999999984 344332 68999999999998753 5789999
Q ss_pred EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
+|+|++|+++ .+|+ ...+++|+.|++++|++++..|.++..++.++.+++++|||.|+|+
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999998 5665 4678999999999999999888889999999999999999999997
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-45 Score=409.92 Aligned_cols=445 Identities=17% Similarity=0.145 Sum_probs=264.8
Q ss_pred cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCccc-CCcccccCC
Q 041867 80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-ISSSPLIHL 158 (776)
Q Consensus 80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~l 158 (776)
++++|++|++++|.+++ +++..|..+++|++|+|++|++++..+..|+++++|++|++++|.+++. ++. .+.++
T Consensus 48 ~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l 122 (549)
T 2z81_A 48 ACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNL 122 (549)
T ss_dssp SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTC
T ss_pred cCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhcc
Confidence 44444444444444433 2223444555555555555555544444455555555555555554421 122 34555
Q ss_pred CCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCc
Q 041867 159 TSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL 238 (776)
Q Consensus 159 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 238 (776)
++|++|++++|.+.+.++...+.++++|++|++++|.+.+ ..|..+..+++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------------~~~~~l~~l~~L 174 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN----------------------------YQSQSLKSIRDI 174 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----------------------------ECTTTTTTCSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc----------------------------cChhhhhccccC
Confidence 5555555555543333333344455555555554444321 223344455556
Q ss_pred CEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcC---CCCCCCCCCcCEEEceeccCcccCChhhh---ccCccc
Q 041867 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF---RLPIHSHKRLGMLDISNNNFRGHIPIEIG---DVLPSL 312 (776)
Q Consensus 239 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~l~~L 312 (776)
+.|++++|.+. .+|.+++..+++|+.|++++|.+.+.. ......+++|+.|++++|.+.+..+..+. ..+++|
T Consensus 175 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 66666655543 345554456677777777777766632 11234467788888888777654443332 224567
Q ss_pred ceeecccccCccCC------CccCCCCCCCCEEEccCCcCCCcCc-----hhhhhcCCCCcEEEccCccccceEecCCCc
Q 041867 313 YLFNNSMNALDGSI------PSSLGNMKFLQILDLSNNHLTGEIP-----EHLAVGCVNLQSLALSNNNLQEGLYLNNNS 381 (776)
Q Consensus 313 ~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~ 381 (776)
+.+++++|.+.+.. ...+..+++|+.|++.++.+. ... ...+...++|+.|++++|.+.
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~l~~~~~~~~~L~~L~l~~n~l~--------- 323 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYSLLEKVKRITVENSKVF--------- 323 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGGGSCCCCHHHHHSTTCCEEEEESSCCC---------
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccc-hhhhcccchhhhhhcccceEEEeccCccc---------
Confidence 77777777665321 123345566666666666554 111 011122345555553333322
Q ss_pred CCCCCCccc-cCCCCCCEEeccCCccccCCC---cccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCccc
Q 041867 382 LSGKIPRWL-GNLTWLQYIIMPNNHLEGPIP---VEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457 (776)
Q Consensus 382 l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 457 (776)
.+|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|++.+..
T Consensus 324 ---~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------- 377 (549)
T 2z81_A 324 ---LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ----------------------- 377 (549)
T ss_dssp ---CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH-----------------------
T ss_pred ---cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc-----------------------
Confidence 233332 345555555555555554332 12444555555555555443210
Q ss_pred ccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCc
Q 041867 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSL 537 (776)
Q Consensus 458 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~ 537 (776)
..+..+..+++|+.|++++|+++ ..|..+..+++|++|++++|++.+... .+
T Consensus 378 -----------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--------------- 429 (549)
T 2z81_A 378 -----------KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI--------------- 429 (549)
T ss_dssp -----------HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS---------------
T ss_pred -----------cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh---------------
Confidence 01134778899999999999998 456678889999999999999874322 11
Q ss_pred chhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccc
Q 041867 538 DEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIG 617 (776)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 617 (776)
+++|++|++++|++++.. ..+++|++|+|++|+++.
T Consensus 430 ----------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ 465 (549)
T 2z81_A 430 ----------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT 465 (549)
T ss_dssp ----------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS
T ss_pred ----------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc
Confidence 237999999999998653 578999999999999996
Q ss_pred cCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 618 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
++ . ...+++|+.|+|++|++++.+|+.+..+++|+.|++++|++.|.+|
T Consensus 466 ip-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 LP-D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC-C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CC-C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 54 3 4568999999999999999999999999999999999999998777
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=404.31 Aligned_cols=457 Identities=19% Similarity=0.142 Sum_probs=283.6
Q ss_pred EEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEe
Q 041867 86 YLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY 165 (776)
Q Consensus 86 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 165 (776)
+|++++|.++. +|. .+. ++|++|++++|++++..|..|.++++|++|++++|++++..|. .|.++++|++|+
T Consensus 4 ~l~ls~n~l~~----ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 75 (520)
T 2z7x_B 4 LVDRSKNGLIH----VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLD 75 (520)
T ss_dssp EEECTTSCCSS----CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred eEecCCCCccc----ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence 45555555543 332 222 4555555555555554445555555555555555555522232 555555555555
Q ss_pred ccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCC
Q 041867 166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSH 245 (776)
Q Consensus 166 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 245 (776)
+++|.++ .++.. .+++|++|++++|.+.. ..+|..++.+++|+.|++++
T Consensus 76 Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~---------------------------~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 76 LSHNKLV-KISCH---PTVNLKHLDLSFNAFDA---------------------------LPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CCSSCCC-EEECC---CCCCCSEEECCSSCCSS---------------------------CCCCGGGGGCTTCCEEEEEE
T ss_pred cCCCcee-ecCcc---ccCCccEEeccCCcccc---------------------------ccchhhhccCCcceEEEecC
Confidence 5555554 22221 45555555555544321 12344555556666666666
Q ss_pred CCCcccCChHHhhcCCCC--cEEEccCCCC--cCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867 246 IKMNGEFPTWLLENNTKL--RQLSLVNDSL--GGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320 (776)
Q Consensus 246 ~~~~~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 320 (776)
|.+.+. . +..+++| +.|++++|.+ .+..+..+..+. +...+++++|.+.+.++......+++|+.++++.|
T Consensus 125 n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 125 THLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp SSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred cccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 655431 1 2455555 6666666666 555555554444 23345666777666666555555777777777777
Q ss_pred c-------CccCCCccCCCCCCCCEEEccCCcCCCcCchhhhh--cCCCCcEEEccCccccceEecCCCcCCCCCCccc-
Q 041867 321 A-------LDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV--GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL- 390 (776)
Q Consensus 321 ~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~- 390 (776)
. +.+.++ .+..+++|+.|++++|.+.+..+..... ..++|++|++++|+ +.+.+|..+
T Consensus 201 ~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----------l~~~~p~~~~ 268 (520)
T 2z7x_B 201 LEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-----------LQGQLDFRDF 268 (520)
T ss_dssp CSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-----------EESCCCCCCC
T ss_pred ccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-----------ccCccccchh
Confidence 5 444444 6777888888888888776433332221 24588888855554 445567666
Q ss_pred ----cCCCCCCEEeccCCccccCCCcccCCC---CCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCC
Q 041867 391 ----GNLTWLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSY 463 (776)
Q Consensus 391 ----~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 463 (776)
+.+++|+.+++++|.+ ......+..+ .+|+.|++++|.+..... ...+++|++|++++|++.
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~--------- 337 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLT--------- 337 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC---------
T ss_pred hcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccC---------
Confidence 7888888888888888 2332444444 678888888888764331 123667888866555443
Q ss_pred ccccccCChhhccCccCCEEEcccccCCc--cchhhhcCCCCCCEEeCCCCcccCCCCC-CCcCCcccccccCCCCcchh
Q 041867 464 NRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYSNSSSLDEQ 540 (776)
Q Consensus 464 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 540 (776)
+..|.++..+++|+.|++++|++++ ..|..+..+++|++|++++|++.+.+|. .+..
T Consensus 338 ----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---------------- 397 (520)
T 2z7x_B 338 ----DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---------------- 397 (520)
T ss_dssp ----TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----------------
T ss_pred ----hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----------------
Confidence 4566677788888888888888886 4456688888888888888888763333 3433
Q ss_pred hhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc
Q 041867 541 FEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP 620 (776)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 620 (776)
+++|++|++++|++++..|..+. ++|+.|++++|+++. +|
T Consensus 398 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip 437 (520)
T 2z7x_B 398 -------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IP 437 (520)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CC
T ss_pred -------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cc
Confidence 23788888888888766665554 678888888888874 44
Q ss_pred cccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 621 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 621 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 555578888888888888874443447778888888888888876544
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-45 Score=417.79 Aligned_cols=456 Identities=19% Similarity=0.222 Sum_probs=264.8
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCc------c------cCCcccccCCCCCCEEeccCCccccccCc
Q 041867 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLT------G------SISSSPLIHLTSIEKLYLSNNHFQIPISL 177 (776)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 177 (776)
.+++.|+|++|.+++.+|.+++++++|++|+|++|.+. + .+|.. . +..|+ ++++.|.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~-~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE-Q--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH-H--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHH-H--HHHHH-hhHHHhhhccCchh
Confidence 35777777777777777777777777777777777552 1 12220 1 23344 55555555443332
Q ss_pred ccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccC-CCCCCcccCccccCCCCcCEEEcCCCCCccc-----
Q 041867 178 EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS-GYEDGVTFPKFLYHQHDLETVELSHIKMNGE----- 251 (776)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----- 251 (776)
.....+..+..+++....+.. .....++.+.+.. .+.+.+ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 226 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA 226 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc
Confidence 111111111111111111100 0011233333322 344555 788888888888888888888875
Q ss_pred ------------CChHHhh--cCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceecc-Ccc-cCChhhhcc-----Cc
Q 041867 252 ------------FPTWLLE--NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN-FRG-HIPIEIGDV-----LP 310 (776)
Q Consensus 252 ------------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~-~~~~~~~~~-----l~ 310 (776)
+|..+ . ++++|+.|++++|.+.+..|..+..+++|+.|++++|+ +++ .+|..+... ++
T Consensus 227 ~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp CSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred ccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 77665 4 78888888888888888777778888888888888887 776 677666541 26
Q ss_pred ccceeecccccCccCCCc--cCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867 311 SLYLFNNSMNALDGSIPS--SLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR 388 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~ 388 (776)
+|++|++++|.++ .+|. .+..+++|++|++++|.+.|.+| .+..+++|+.|++++|++. .+|.
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~------------~lp~ 370 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT------------EIPA 370 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE------------ECCT
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc------------cccH
Confidence 7777777777777 5666 67777777777777777776666 3445667777775555443 4556
Q ss_pred cccCCCC-CCEEeccCCccccCCCcccCCCC--CCcEEEccccccCCCCCCCCC--------CCcccEEEcCCcccCccc
Q 041867 389 WLGNLTW-LQYIIMPNNHLEGPIPVEFCQLD--LLQILDISDNNISGSLPSCFH--------PLSIKQVHLSKNMLHGQL 457 (776)
Q Consensus 389 ~~~~l~~-L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~--------~~~L~~L~l~~n~l~~~~ 457 (776)
.+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+. ..+|++|++++|++.
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--- 446 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--- 446 (636)
T ss_dssp TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---
T ss_pred hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC---
Confidence 6666776 777777777776 5555555543 677777777777665544332 335555544444332
Q ss_pred ccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCC-------CCCEEeCCCCcccCCCCCCCc--CCccc
Q 041867 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELN-------QLQLLDLSNNNLHGPIPPCFD--NTTLY 528 (776)
Q Consensus 458 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~--~~~~~ 528 (776)
...+..+..+++|+.|++++|+++......+.... +|+.|++++|+++ .+|..+. .
T Consensus 447 ----------~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~---- 511 (636)
T 4eco_A 447 ----------KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT---- 511 (636)
T ss_dssp ----------SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT----
T ss_pred ----------cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc----
Confidence 22233344456666666666666533333333222 5666666666655 2333222 2
Q ss_pred ccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCee
Q 041867 529 ESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608 (776)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 608 (776)
+++|+.|+|++|++++ +|..+..+++|+.|
T Consensus 512 -------------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 512 -------------------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred -------------------------------------------------CCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 2356666666666664 55555566666666
Q ss_pred ec------ccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867 609 NL------SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 667 (776)
Q Consensus 609 ~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 667 (776)
+| ++|++.+.+|..+..+++|++|+|++|+++ .+|..+. ++|+.|++++|++.+..
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 66 345555555556666666666666666663 4454433 45666666666555433
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=391.55 Aligned_cols=460 Identities=18% Similarity=0.198 Sum_probs=308.7
Q ss_pred cEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEE
Q 041867 8 EYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYL 87 (776)
Q Consensus 8 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L 87 (776)
++|++++|+++. +|.. +. ++|++|++++|.+.+..+. +|.++++|++|++++| .+.+..+..+. ++++|++|
T Consensus 3 ~~l~ls~n~l~~-ip~~-~~--~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKD-LS--QKTTILNISQNYISELWTS-DILSLSKLRILIISHN--RIQYLDISVFK-FNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS-CCCS-CC--TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSS--CCCEEEGGGGT-TCTTCCEE
T ss_pred ceEecCCCCccc-cccc-cc--ccccEEECCCCcccccChh-hccccccccEEecCCC--ccCCcChHHhh-cccCCCEE
Confidence 456777777663 4443 22 6677777777776644333 5666677777777776 44454455555 66667777
Q ss_pred EccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCC--CEE
Q 041867 88 SLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI--EKL 164 (776)
Q Consensus 88 ~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L 164 (776)
++++|.++. ++.. .+++|++|+|++|++++ ..|..|+++++|++|++++|.+++ ..+..+++| ++|
T Consensus 75 ~Ls~N~l~~----lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 75 DLSHNKLVK----ISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV 143 (520)
T ss_dssp ECCSSCCCE----EECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred ecCCCceee----cCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence 776666653 4432 56666666666666665 245666666666666666666653 134555555 666
Q ss_pred eccCCcc--ccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867 165 YLSNNHF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242 (776)
Q Consensus 165 ~L~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 242 (776)
++++|.+ .+..+ ..+..+.. +...++
T Consensus 144 ~l~~n~l~~~~~~~-~~l~~l~~---------------------------------------------------~~l~l~ 171 (520)
T 2z7x_B 144 LLVLGETYGEKEDP-EGLQDFNT---------------------------------------------------ESLHIV 171 (520)
T ss_dssp EEEECTTTTSSCCT-TTTTTCCE---------------------------------------------------EEEEEE
T ss_pred Eeeccccccccccc-cccccccc---------------------------------------------------ceEEEE
Confidence 6666655 32221 11222211 111223
Q ss_pred cCCCCCcccCChHHhhcCCCCcEEEccCCC-------CcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc--cCcccc
Q 041867 243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDS-------LGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD--VLPSLY 313 (776)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~l~~L~ 313 (776)
+++|.+.+.++...+.++++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+..+..+.. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 334433333333333444555555555443 222222 4566777888888877776433322221 135889
Q ss_pred eeecccccCccCCCccC-----CCCCCCCEEEccCCcCCCcCchhhhhcC---CCCcEEEccCccccceEecCCCcCCCC
Q 041867 314 LFNNSMNALDGSIPSSL-----GNMKFLQILDLSNNHLTGEIPEHLAVGC---VNLQSLALSNNNLQEGLYLNNNSLSGK 385 (776)
Q Consensus 314 ~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~ls~n~l~~~l~l~~n~l~~~ 385 (776)
.|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+|...+..+ .+|+.|++++|++. ..
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-----------~~ 317 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-----------HM 317 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-----------CC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-----------cc
Confidence 99999999888888887 8899999999999998 6673322223 57999997777653 11
Q ss_pred CCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcc
Q 041867 386 IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNR 465 (776)
Q Consensus 386 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 465 (776)
. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------------------------------- 363 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-------------------------------- 363 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH--------------------------------
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc--------------------------------
Confidence 1 125788899999999999888888888888999998888887631
Q ss_pred ccccCChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867 466 LNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544 (776)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (776)
...|..+..+++|+.|++++|.+++ .....+..+++|++|++++|++++..|..+.
T Consensus 364 --~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------------------- 420 (520)
T 2z7x_B 364 --SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--------------------- 420 (520)
T ss_dssp --HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---------------------
T ss_pred --ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---------------------
Confidence 0235668889999999999999998 4444588899999999999999865554332
Q ss_pred cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624 (776)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 624 (776)
++|+.|++++|+++ .+|..+..+++|++|++++|+++++++..|.
T Consensus 421 ----------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 421 ----------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp ----------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 27999999999999 6777777999999999999999977666699
Q ss_pred CCCCCCEEECcCCccCCcCC
Q 041867 625 NLKHVESLDLSNNKLNGKIP 644 (776)
Q Consensus 625 ~l~~L~~L~Ls~N~l~~~~~ 644 (776)
.+++|++|++++|++++..+
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccEEECcCCCCcccCC
Confidence 99999999999999986443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-43 Score=402.70 Aligned_cols=382 Identities=20% Similarity=0.202 Sum_probs=297.1
Q ss_pred CCCCcccCccccCCCCcCEEEcCCCCCcc-----------------cCChHH-hhcCCCCcEEEccCCCCcCcCCCCCCC
Q 041867 222 YEDGVTFPKFLYHQHDLETVELSHIKMNG-----------------EFPTWL-LENNTKLRQLSLVNDSLGGPFRLPIHS 283 (776)
Q Consensus 222 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~ 283 (776)
+.+.+ +|..++++++|+.|++++|.+++ .+|..+ |.++++|+.|++++|.+.+..|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 34445 88889999999999999999987 377775 348899999999999988888888999
Q ss_pred CCCcCEEEceecc-Ccc-cCChhhhc------cCcccceeecccccCccCCCc--cCCCCCCCCEEEccCCcCCCcCchh
Q 041867 284 HKRLGMLDISNNN-FRG-HIPIEIGD------VLPSLYLFNNSMNALDGSIPS--SLGNMKFLQILDLSNNHLTGEIPEH 353 (776)
Q Consensus 284 ~~~L~~L~ls~n~-l~~-~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (776)
+++|+.|++++|+ +++ .+|..+.. .+++|+.|++++|.+. .+|. .+..+++|++|++++|.+. .+|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 9999999999998 877 67776554 1348899999999888 7777 7888899999999999888 888
Q ss_pred hhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCC-CCEEeccCCccccCCCcccCCCCC--CcEEEcccccc
Q 041867 354 LAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW-LQYIIMPNNHLEGPIPVEFCQLDL--LQILDISDNNI 430 (776)
Q Consensus 354 ~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~ls~n~l 430 (776)
.+..+++|+.|++++|++ . .+|..+..+++ |++|++++|.+. .+|..+..+.. |+.|++++|.+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l-----------~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQI-----------E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CCCTTSEESEEECCSSCC-----------S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hhcCCCcceEEECcCCcc-----------c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence 455688888888655554 3 57777888888 999999999888 66777776654 89999999988
Q ss_pred CCCCCCCC------CCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC---
Q 041867 431 SGSLPSCF------HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL--- 501 (776)
Q Consensus 431 ~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--- 501 (776)
.+..+... ...+|++|++++|++. ...+..+..+++|+.|+|++|+++......+...
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC-------------ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 87655433 2457888877666554 2333345578899999999998885444444332
Q ss_pred ----CCCCEEeCCCCcccCCCCCCCc--CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867 502 ----NQLQLLDLSNNNLHGPIPPCFD--NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575 (776)
Q Consensus 502 ----~~L~~L~Ls~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (776)
++|+.|+|++|+++ .+|..+. .
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~--------------------------------------------------- 751 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATT--------------------------------------------------- 751 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTT---------------------------------------------------
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhcc---------------------------------------------------
Confidence 38999999999888 4454443 3
Q ss_pred ccccccceEEccCCcCCCCChhhhccCccCCeeeccc------ccccccCccccCCCCCCCEEECcCCccCCcCCccccC
Q 041867 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSH------NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 649 (776)
Q Consensus 576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 649 (776)
+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+.
T Consensus 752 --l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~- 826 (876)
T 4ecn_A 752 --LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT- 826 (876)
T ss_dssp --CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred --CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence 3489999999999986 688888999999999976 778888888999999999999999999 57777665
Q ss_pred CCCCCEEecccccCcccCCCccccccccCcccccCCCCCC--CCC
Q 041867 650 LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC--GLP 692 (776)
Q Consensus 650 l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c--~~~ 692 (776)
++|+.|||++|++....+..+..........+.+|++.+ +|+
T Consensus 827 -~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 827 -PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp -SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred -CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 689999999999987777766666666677777776655 775
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-44 Score=404.63 Aligned_cols=370 Identities=18% Similarity=0.204 Sum_probs=284.2
Q ss_pred CCccccccCccccCCCCCCEEeCCCCcCccc-----------------CCccccc--CCCCCCEEeccCCccccccCccc
Q 041867 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-----------------ISSSPLI--HLTSIEKLYLSNNHFQIPISLEP 179 (776)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 179 (776)
.|++++ +|..|+++++|++|+|++|.+++. +|. .+. ++++|++|++++|.+.+.+| ..
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~ 268 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TF 268 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HH
Confidence 355665 566666666666666666666643 555 555 66666666666666665555 44
Q ss_pred ccCCCCCcEEEcccCc-ccc-cccccccCC---CCCcccceEeccCCCCCCcccCc--cccCCCCcCEEEcCCCCCcccC
Q 041867 180 LFNHSRLKTFYADNNE-LNA-EITQSHSLT---APNFQLSRLSLSSGYEDGVTFPK--FLYHQHDLETVELSHIKMNGEF 252 (776)
Q Consensus 180 l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~ 252 (776)
+.++++|++|++++|. +++ ..+..+... ....+|+.|++ .++.+. .+|. .+..+++|+.|++++|.+.+.+
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC-CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 6666666666666665 544 333221110 11136667777 555555 6787 8899999999999999999888
Q ss_pred ChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCC-cCEEEceeccCcccCChhhhcc-CcccceeecccccCccCCCccC
Q 041867 253 PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR-LGMLDISNNNFRGHIPIEIGDV-LPSLYLFNNSMNALDGSIPSSL 330 (776)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~ 330 (776)
| . +..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.++ .+|..+... +++|+.|++++|.+.+..|..+
T Consensus 347 p-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 347 P-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp C-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred h-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 8 4 478999999999999998 56677888998 999999999998 778765431 3489999999999999888888
Q ss_pred C-------CCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc-------CCCCC
Q 041867 331 G-------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG-------NLTWL 396 (776)
Q Consensus 331 ~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~-------~l~~L 396 (776)
. .+++|++|++++|.++ .+|..++..+++|+.|++++|++. ...+..+. ++++|
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-----------~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-----------EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-----------BCCSSSSEETTEECTTGGGC
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-----------CcCHHHhccccccccccCCc
Confidence 8 7889999999999999 899999988999999997777654 22223333 33499
Q ss_pred CEEeccCCccccCCCcccC--CCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 397 QYIIMPNNHLEGPIPVEFC--QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 397 ~~L~l~~n~i~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
++|++++|.++ .+|..+. .+++|+.|++++|++.+.+.....+++|++|++++|+ ++++|.+.+.+|.++
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-------~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR-------DAQGNRTLREWPEGI 562 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB-------CTTCCBCCCCCCTTG
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc-------ccccCcccccChHHH
Confidence 99999999999 6777776 9999999999999999854444559999999999987 678899999999999
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP 520 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 520 (776)
..+++|+.|+|++|+++ .+|..+. ++|+.|++++|++......
T Consensus 563 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp GGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred hcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence 99999999999999995 5565554 8999999999998755443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.1e-42 Score=384.94 Aligned_cols=440 Identities=20% Similarity=0.170 Sum_probs=230.6
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEE
Q 041867 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189 (776)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 189 (776)
++|++|++++|.+++..+..|.++++|++|++++|.++ .++...|.++++|++|++++|.++ .++.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 34555555555555444444555555555555555554 222224455555555555555444 22221 34444444
Q ss_pred EcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCC--cEEE
Q 041867 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKL--RQLS 267 (776)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~ 267 (776)
++++|.+.. ...|..+..+++|+.|++++|.+.+.. +..+++| +.|+
T Consensus 127 ~Ls~N~l~~---------------------------l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~ 175 (562)
T 3a79_B 127 DLSFNDFDV---------------------------LPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCIL 175 (562)
T ss_dssp ECCSSCCSB---------------------------CCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEE
T ss_pred ECCCCCccc---------------------------cCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEE
Confidence 444443321 012233444445555555555444311 1233333 5555
Q ss_pred ccCCCC--cCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeecccccCc----cCCCccCCCCCCCCEEE
Q 041867 268 LVNDSL--GGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD----GSIPSSLGNMKFLQILD 340 (776)
Q Consensus 268 L~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~ 340 (776)
+++|.+ .+..+..+..+. +.-.+++++|.+.+.++......+++|+.++++.|... ......+..+++|+.++
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 555555 444444443332 11134555555555444444444556666666665311 01112345556666666
Q ss_pred ccCCcCCCcCchhhh--hcCCCCcEEEccCccccceEecCCCcCCCCCCccc-----cCCCCCCEEeccCCccccCCC-c
Q 041867 341 LSNNHLTGEIPEHLA--VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-----GNLTWLQYIIMPNNHLEGPIP-V 412 (776)
Q Consensus 341 l~~n~l~~~~~~~~~--~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~~-~ 412 (776)
++++.+.+....... ...++|++|++++|. +++.+|..+ ..++.|+.++++.+.+ ..| .
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~ 322 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-----------ITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKE 322 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE-----------ECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHH
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccE-----------eeccccchhhhcccccchheehhhccccee--ecChh
Confidence 666655422111111 123466666644433 334455544 5555666666665555 222 2
Q ss_pred ccCC---CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccccc
Q 041867 413 EFCQ---LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 489 (776)
Q Consensus 413 ~~~~---l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 489 (776)
.+.. ..+|+.|++++|.+..... ...+++|++|++++|++ ++..|.++.++++|+.|++++|+
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l-------------~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVF-------------TDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCC-------------CTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCcc-------------ccchhhhhcccCCCCEEECCCCC
Confidence 2221 2457777777777653221 02255666665554443 33456666777777777777777
Q ss_pred CCccc--hhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeee
Q 041867 490 LEGEV--LVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT 566 (776)
Q Consensus 490 l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (776)
+++.. +..+..+++|++|++++|++.+..| ..+..+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l----------------------------------------- 427 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA----------------------------------------- 427 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----------------------------------------
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----------------------------------------
Confidence 77532 4556777777777777777776333 234332
Q ss_pred cceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCcc
Q 041867 567 KNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ 646 (776)
Q Consensus 567 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 646 (776)
++|++|++++|++++..|..+. ++|+.|+|++|+++.+ |..+..+++|++|++++|+++...+..
T Consensus 428 ------------~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 428 ------------ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp ------------TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred ------------ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 3677777777777655554433 5777777777777744 333447777777777777777433333
Q ss_pred ccCCCCCCEEecccccCcccCC
Q 041867 647 LVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 647 l~~l~~L~~L~l~~N~l~~~~p 668 (776)
+..+++|+.|++++|++.|.+|
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHH
T ss_pred HhcCCCCCEEEecCCCcCCCcc
Confidence 6777777777777777776544
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-41 Score=391.90 Aligned_cols=325 Identities=18% Similarity=0.182 Sum_probs=167.7
Q ss_pred CCCcEEECCCCCCCCccchhccCCCCCCCEEeC-CCCcCccccCCCcCCC---CCCC--cEEeC-------C-CCccccC
Q 041867 5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSI-SYCEVNGVVHGQGFPH---FKSL--EHLGM-------M-STRIALN 70 (776)
Q Consensus 5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L-s~n~~~~~~~~~~~~~---l~~L--~~L~l-------~-~~~i~~~ 70 (776)
.+++.|+|+++.+.+.+|.+ ++++++|++|+| ++|.+.+..+...... +... +.+.. . .....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 35777888888887777776 778888888888 6776654422110000 0000 00000 0 0000001
Q ss_pred cchhHHHHh----------cCCCccEEEccC--CCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc--------------
Q 041867 71 TNFLQVISE----------SMPSLKYLSLSY--STLGTNSSRILDRGLCSPVHLQELYIGSNDLRG-------------- 124 (776)
Q Consensus 71 ~~~~~~~~~----------~l~~L~~L~L~~--n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-------------- 124 (776)
......+.. ....++.+.+.. |.+++ +|. .|+++++|++|+|++|++++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~----IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF----ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE----ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc----hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccc
Confidence 111111110 111222222222 34432 443 57777777777777777776
Q ss_pred ---ccCcccc--CCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCc-ccc-ccCcc------cccCCCCCcEEEc
Q 041867 125 ---SLPWCMT--NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH-FQI-PISLE------PLFNHSRLKTFYA 191 (776)
Q Consensus 125 ---~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~------~l~~l~~L~~L~l 191 (776)
.+|..++ ++++|++|+|++|.+.+.+|. .|.++++|++|++++|. +++ .+|.. .+..+++|++|++
T Consensus 477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred ccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 2677766 788888888888877777775 77778888888888876 664 33321 1223335555555
Q ss_pred ccCcccccccccccCCCCCcccceEeccCCCCCCcccCc--cccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEcc
Q 041867 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK--FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLV 269 (776)
Q Consensus 192 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 269 (776)
++|.+. .+|. .+..+++|+.|++++|.+. .+| . +..+++|+.|+++
T Consensus 556 s~N~L~-----------------------------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 556 GYNNLE-----------------------------EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLD 603 (876)
T ss_dssp CSSCCC-----------------------------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECC
T ss_pred eCCcCC-----------------------------ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECc
Confidence 444332 2333 4455555555555555555 444 2 2455555555555
Q ss_pred CCCCcCcCCCCCCCCCC-cCEEEceeccCcccCChhhhcc-CcccceeecccccCccCCCcc---CC--CCCCCCEEEcc
Q 041867 270 NDSLGGPFRLPIHSHKR-LGMLDISNNNFRGHIPIEIGDV-LPSLYLFNNSMNALDGSIPSS---LG--NMKFLQILDLS 342 (776)
Q Consensus 270 ~n~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~ 342 (776)
+|.+. ..+..+..+++ |+.|++++|.+. .+|..+... .++|+.|++++|.+.+.+|.. +. .+++|+.|+++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 55555 34444555555 555555555555 444333220 122555555555555433321 11 22356666666
Q ss_pred CCcCCCcCchhhhhcCCCCcEEEccCccc
Q 041867 343 NNHLTGEIPEHLAVGCVNLQSLALSNNNL 371 (776)
Q Consensus 343 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~l 371 (776)
+|.+. .+|..++..+++|+.|++++|++
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 66665 56665555556666666444443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5e-41 Score=385.81 Aligned_cols=542 Identities=21% Similarity=0.201 Sum_probs=389.2
Q ss_pred CCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCcc
Q 041867 6 NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLK 85 (776)
Q Consensus 6 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~ 85 (776)
++++|+|++|+|++..+.+ |.++++|++|+|++|.|++ ++..+|.++++|++|+|++| .+.+..+..+. ++++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N--~l~~l~~~~f~-~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN--PIQSLALGAFS-GLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC--CCCEECGGGGT-TCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHH-HhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCC--cCCCCCHHHhc-CCCCCC
Confidence 7999999999999766666 9999999999999999985 44448999999999999999 55555555555 999999
Q ss_pred EEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCCCC---
Q 041867 86 YLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI--- 161 (776)
Q Consensus 86 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--- 161 (776)
+|++++|.+++ +++..|+++++|++|+|++|.++.. .|..++.+++|++|++++|+++ .++...+..+.++
T Consensus 128 ~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 128 KLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 202 (635)
T ss_dssp EEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTC
T ss_pred EEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhhh
Confidence 99999999986 6666899999999999999999864 6788999999999999999998 5544466655444
Q ss_pred -CEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867 162 -EKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240 (776)
Q Consensus 162 -~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 240 (776)
..++++.|.+.. ++.. ......++.+++..|......... .+..+..++.
T Consensus 203 ~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~---------------------------~~~~l~~l~~ 253 (635)
T 4g8a_A 203 NLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKT---------------------------CIQGLAGLEV 253 (635)
T ss_dssp CCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHH---------------------------HHHTTTTCEE
T ss_pred hhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccch---------------------------hhcCCccccc
Confidence 478899998873 3322 334445677888777544322111 1111122222
Q ss_pred EEcCCC------CCcccCChHHhhcCCCCcEEEccCCCCc---CcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcc
Q 041867 241 VELSHI------KMNGEFPTWLLENNTKLRQLSLVNDSLG---GPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311 (776)
Q Consensus 241 L~l~~~------~~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 311 (776)
..+..+ .+....... +.....+....+..+... ......+....+++.+++.++.+....+ + .....
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~-~~~~~ 329 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSA-LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F-SYNFG 329 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTT-TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G-GSCCC
T ss_pred ccccccccccccccccccccc-cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--c-ccchh
Confidence 111100 000011111 123333444333322221 1222345556677788887777653222 1 12457
Q ss_pred cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391 (776)
Q Consensus 312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~ 391 (776)
++.+++.+|.+....+ ..++.|+.+++..|.+. ..+.. ..+++|+.|++++|.+.. .+..+..+.
T Consensus 330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~--~~l~~L~~L~ls~n~l~~---------~~~~~~~~~ 394 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSE--VDLPSLEFLDLSRNGLSF---------KGCCSQSDF 394 (635)
T ss_dssp CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCCC--CBCTTCCEEECCSSCCBE---------EEECCHHHH
T ss_pred hhhhhcccccccCcCc---ccchhhhhcccccccCC-CCccc--ccccccccchhhcccccc---------ccccccchh
Confidence 8888888887764433 24577888888888776 33322 257889999977776542 123455667
Q ss_pred CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP 471 (776)
Q Consensus 392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 471 (776)
.+.+|+++++..+.... .+..+..+++|+.++++.+...... .+
T Consensus 395 ~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~-----------------------------------~~ 438 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS-----------------------------------EF 438 (635)
T ss_dssp SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT-----------------------------------SS
T ss_pred hhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc-----------------------------------cc
Confidence 78899999999998874 4556888999999999988765332 22
Q ss_pred hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCccc-CCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867 472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550 (776)
Q Consensus 472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (776)
..|..+++++.++++.|.+.+..+..+..++.++.|++++|++. +..|..|..++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------------------------ 494 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------------------ 494 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------------------------
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------------------------
Confidence 34677888999999999999888888999999999999999754 44566666544
Q ss_pred CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 630 (776)
+|++|+|++|++++..|..|.++++|++|+|++|+|+++++..|.++++|+
T Consensus 495 -----------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 495 -----------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp -----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred -----------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred EEECcCCccCCcCCccccCC-CCCCEEecccccCcccCCC-ccccccc-cCcccccCCCCCCCCCCC
Q 041867 631 SLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE-WTAQFAT-FNESSYEGNTFLCGLPLP 694 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~-~~~~~~~-l~~~~~~~n~~~c~~~~~ 694 (776)
+|||++|+|++..|+.+..+ ++|+.|++++|++.|.+.- |+..|.. -.....+.....|.-|..
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 612 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence 99999999999999999988 6899999999999985542 3322211 111112234567876654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-40 Score=373.23 Aligned_cols=464 Identities=17% Similarity=0.186 Sum_probs=304.8
Q ss_pred CCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCC
Q 041867 29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCS 108 (776)
Q Consensus 29 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 108 (776)
+...+++++++|.++ .+|. .+. ++|++|++++| .+.+..+..+. ++++|++|++++|.+++ +++..|..
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N--~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~----~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQN--SISELRMPDIS-FLSELRVLRLSHNRIRS----LDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSS--CCCCCCGGGTT-TCTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCC--CccccChhhhc-cCCCccEEECCCCCCCc----CCHHHhCC
Confidence 344477777777776 3554 232 67777777777 44454455555 77777777777777764 44456777
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCC-cccccCCCCCCEEeccCCccccccCcccccCCCCC-
Q 041867 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSIS-SSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRL- 186 (776)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L- 186 (776)
+++|++|+|++|+++ .+|.. .+++|++|++++|.++ .++ +..|.++++|++|++++|.+++ .. +..+++|
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~ 170 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLH 170 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSC
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhce
Confidence 777777777777777 34444 6777777777777776 333 1267777777777777777663 22 3333344
Q ss_pred -cEEEcccCcc--cccccccccCCCCCcccceEeccCCCCCCcccCccccCCC-CcCEEEcCCCCCcccCChHHhhcCCC
Q 041867 187 -KTFYADNNEL--NAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH-DLETVELSHIKMNGEFPTWLLENNTK 262 (776)
Q Consensus 187 -~~L~l~~n~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~ 262 (776)
++|++++|.+ .... |..+..+. ..-.+++++|.+.+.++...+..+++
T Consensus 171 L~~L~L~~n~l~~~~~~----------------------------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGE----------------------------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp EEEEEEEESSCCCCSSS----------------------------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred eeEEEeecccccccccC----------------------------cccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 7777777765 3221 11222111 01123444554444444433344555
Q ss_pred CcEEEccCCCCcC----cCCCCCCCCCCcCEEEceeccCcccCChhhh--ccCcccceeecccccCccCCCccC-----C
Q 041867 263 LRQLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGHIPIEIG--DVLPSLYLFNNSMNALDGSIPSSL-----G 331 (776)
Q Consensus 263 L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-----~ 331 (776)
|+.+++++|.... .....+..+++|+.++++++.+.+....... ...++|++|++++|.+.+.+|..+ .
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 5555555543100 0011234456666666666655432111111 013478888888888887777766 6
Q ss_pred CCCCCCEEEccCCcCCCcCchhhhhc---CCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc
Q 041867 332 NMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG 408 (776)
Q Consensus 332 ~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 408 (776)
.++.|+.++++.+.+ .+|...... ..+|+.|++++|.+. ... ....+++|++|++++|.+++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-----------~~~--~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-----------HMV--CPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-----------CCC--CCSSCCCCCEEECCSSCCCT
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-----------ccc--CccCCCCceEEECCCCcccc
Confidence 666777777777766 555332222 256888887666543 111 12567888888888888888
Q ss_pred CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc
Q 041867 409 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN 488 (776)
Q Consensus 409 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 488 (776)
..|..+..+++|++|++++|++.+.. ..|..+.++++|+.|++++|
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------------~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFF----------------------------------KVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTT----------------------------------HHHHTTTTCTTCCEEECTTS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcc----------------------------------cchhhhcCCCCCCEEECCCC
Confidence 78888888888888888888776321 23455788999999999999
Q ss_pred cCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeec
Q 041867 489 NLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTK 567 (776)
Q Consensus 489 ~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (776)
.+++ ..+..+..+++|++|++++|++++..|..+.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-------------------------------------------- 449 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-------------------------------------------- 449 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--------------------------------------------
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--------------------------------------------
Confidence 9998 4455688999999999999999865554332
Q ss_pred ceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCC
Q 041867 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP 644 (776)
Q Consensus 568 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 644 (776)
++|+.|++++|+++ .+|..+..+++|++|+|++|+++++++..|..+++|+.|++++|++.+..+
T Consensus 450 -----------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 -----------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -----------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -----------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 27999999999999 566666699999999999999997766669999999999999999986544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-38 Score=345.35 Aligned_cols=364 Identities=20% Similarity=0.187 Sum_probs=192.8
Q ss_pred CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
++|+.|++++|.+.+..|..+ .++++|+.|++++|.+.+ ..+..|..+++|++|++++|.+.+..|..+.. +++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence 556666666666655444443 566666666666665543 22344566666666666666665444444443 556666
Q ss_pred eecccccCccCCCcc--CCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867 315 FNNSMNALDGSIPSS--LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392 (776)
Q Consensus 315 L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~ 392 (776)
|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++.++++|++|++++|+ +.+..+..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~l~~ 176 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-----------VKSICEEDLLN 176 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-----------BSCCCTTTSGG
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-----------ccccChhhhhc
Confidence 666666655433222 55566666666666666543344444455666666633333 23344444444
Q ss_pred C--CCCCEEeccCCccccCCCcc--------cCCCCCCcEEEccccccCCCCCCCCC----CCcccEEEcCCcccCcccc
Q 041867 393 L--TWLQYIIMPNNHLEGPIPVE--------FCQLDLLQILDISDNNISGSLPSCFH----PLSIKQVHLSKNMLHGQLK 458 (776)
Q Consensus 393 l--~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~L~~L~l~~n~l~~~~~ 458 (776)
+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+. ..+++.+++++|...+.
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-- 254 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-- 254 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC--
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc--
Confidence 3 45566666666655443322 22445566666666655543333222 24555555555544322
Q ss_pred cccCCccccccCChhhccC--ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCC
Q 041867 459 RDLSYNRLNGSIPDWVDGL--SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS 536 (776)
Q Consensus 459 ~~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 536 (776)
.+..+.+....+..+.++ ++|+.|++++|.+++..+..+..+++|++|++++|++.+..|..|..++
T Consensus 255 -~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------- 323 (455)
T 3v47_A 255 -SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---------- 323 (455)
T ss_dssp -CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----------
T ss_pred -ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----------
Confidence 122233333333333332 4555556665555555555555555555555555555555554444432
Q ss_pred cchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccc
Q 041867 537 LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLI 616 (776)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 616 (776)
+|++|++++|.+++..|..|.++++|++|+|++|+++
T Consensus 324 -------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 324 -------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp -------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 5555555555555555555555555555555555555
Q ss_pred ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 617 GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 617 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
+..|..|.++++|++|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5555555555555555555555555444455555555555555555555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-37 Score=341.86 Aligned_cols=373 Identities=18% Similarity=0.205 Sum_probs=314.2
Q ss_pred CEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecc
Q 041867 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNS 318 (776)
Q Consensus 239 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~ 318 (776)
+.++.+++++. .+|. -.++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666655 4554 237899999999999999899999999999999999999867766555558999999999
Q ss_pred cccCccCCCccCCCCCCCCEEEccCCcCCCcCch-hhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcc-ccCCCCC
Q 041867 319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRW-LGNLTWL 396 (776)
Q Consensus 319 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~-~~~l~~L 396 (776)
+|.+.+..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|. +.+..|.. +..+++|
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-----------IKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-----------CCSCCCCGGGGGCTTC
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-----------cCccCcccccCCCCcc
Confidence 9999988899999999999999999999854443 346679999999965555 45566665 8899999
Q ss_pred CEEeccCCccccCCCcccCCC--CCCcEEEccccccCCCCCCC---------CCCCcccEEEcCCcccCcccccccCCcc
Q 041867 397 QYIIMPNNHLEGPIPVEFCQL--DLLQILDISDNNISGSLPSC---------FHPLSIKQVHLSKNMLHGQLKRDLSYNR 465 (776)
Q Consensus 397 ~~L~l~~n~i~~~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 465 (776)
++|++++|.+.+..+..+..+ .+|+.+++++|.+.+..+.. +..++|++|++++|++.+
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---------- 226 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE---------- 226 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH----------
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc----------
Confidence 999999999999888888776 79999999999998765543 235789999887776654
Q ss_pred ccccCChhhccC---ccCCEEEcccccCCcc----------chhhhcC--CCCCCEEeCCCCcccCCCCCCCcCCccccc
Q 041867 466 LNGSIPDWVDGL---SQLSHLILGHNNLEGE----------VLVQLCE--LNQLQLLDLSNNNLHGPIPPCFDNTTLYES 530 (776)
Q Consensus 466 l~~~~~~~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 530 (776)
..|..+... ++|+.|++++|.+.+. ....+.. .++|+.|++++|++.+..|..+..++
T Consensus 227 ---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---- 299 (455)
T 3v47_A 227 ---SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT---- 299 (455)
T ss_dssp ---HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT----
T ss_pred ---cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC----
Confidence 444444443 8899999998865432 1222322 36899999999999988888887654
Q ss_pred ccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeec
Q 041867 531 YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610 (776)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 610 (776)
+|++|++++|.+.+..|..|.++++|++|+|
T Consensus 300 -------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 300 -------------------------------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp -------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------------------------------------------CCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 8999999999999999999999999999999
Q ss_pred ccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690 (776)
Q Consensus 611 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~ 690 (776)
++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.|+
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999987777788999999999999999999
Q ss_pred CCC
Q 041867 691 LPL 693 (776)
Q Consensus 691 ~~~ 693 (776)
||.
T Consensus 411 ~~~ 413 (455)
T 3v47_A 411 CPR 413 (455)
T ss_dssp TTT
T ss_pred CCc
Confidence 984
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-36 Score=328.90 Aligned_cols=425 Identities=24% Similarity=0.259 Sum_probs=205.0
Q ss_pred CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867 4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS 83 (776)
Q Consensus 4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~ 83 (776)
.++|++|++++|.+ +.+|.+ ++++++|++|++++|.+.+.+|. .+.++++|+.+++..| . ..+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c--~------------~~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDC--L------------DRQ 72 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHH--H------------HHT
T ss_pred cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhh--h------------ccC
Confidence 46788888888888 577777 78888888888888888777776 6777777777766665 1 146
Q ss_pred ccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCE
Q 041867 84 LKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK 163 (776)
Q Consensus 84 L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 163 (776)
+++|++++|.+++ ++. -.++|++|++++|.+++ +|.. .++|++|++++|.++ .++. + .++|++
T Consensus 73 l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~~ 135 (454)
T 1jl5_A 73 AHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLEY 135 (454)
T ss_dssp CSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCCE
T ss_pred CCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC--C--CCCCCE
Confidence 8899999998875 442 13688999999998886 5543 478889999988887 4544 1 267888
Q ss_pred EeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867 164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243 (776)
Q Consensus 164 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 243 (776)
|++++|.+++ ++ .+..+++|++|++++|.+.. +|.. ..+|++|++
T Consensus 136 L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~L 180 (454)
T 1jl5_A 136 LGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIAA 180 (454)
T ss_dssp EECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEEC
T ss_pred EECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEEC
Confidence 8888888774 44 36677777777776665431 1111 124444444
Q ss_pred CCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCc
Q 041867 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 323 (776)
++|. +.+. + .+..+++|+.|++++|.+++ +|.. .++|+.|++++|.+.
T Consensus 181 ~~n~-------------------------l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 181 GNNQ-------------------------LEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE 228 (454)
T ss_dssp CSSC-------------------------CSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS
T ss_pred cCCc-------------------------CCcC-c-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC
Confidence 4444 4432 1 34455555556665555552 2221 235666666666665
Q ss_pred cCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccC
Q 041867 324 GSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN 403 (776)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 403 (776)
.+| .+..+++|++|++++|+++ .+|. .+++|+.|++++|++. + +|.. .++|++|++++
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~-----------~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLT-----------D-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCS-----------C-CCCC---CTTCCEEECCS
T ss_pred -ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccc-----------c-cCcc---cCcCCEEECcC
Confidence 344 3566666666666666666 4443 2355666664444432 1 2221 24555555555
Q ss_pred CccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccC-ccCCE
Q 041867 404 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL-SQLSH 482 (776)
Q Consensus 404 n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l-~~L~~ 482 (776)
|.+++... -.++|+.|++++|.+.+.. .+ ++|+.
T Consensus 287 N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----------------------------------------~~~~~L~~ 321 (454)
T 1jl5_A 287 NIFSGLSE----LPPNLYYLNASSNEIRSLC-----------------------------------------DLPPSLEE 321 (454)
T ss_dssp SCCSEESC----CCTTCCEEECCSSCCSEEC-----------------------------------------CCCTTCCE
T ss_pred CccCcccC----cCCcCCEEECcCCcCCccc-----------------------------------------CCcCcCCE
Confidence 55553210 0134555555555444210 11 36666
Q ss_pred EEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccccee
Q 041867 483 LILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIF 562 (776)
Q Consensus 483 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (776)
|++++|++++. |. .+++|++|++++|++++. |. .
T Consensus 322 L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~l-p~---~-------------------------------------- 355 (454)
T 1jl5_A 322 LNVSNNKLIEL-PA---LPPRLERLIASFNHLAEV-PE---L-------------------------------------- 355 (454)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---C--------------------------------------
T ss_pred EECCCCccccc-cc---cCCcCCEEECCCCccccc-cc---h--------------------------------------
Confidence 77777766652 22 146777777777777632 22 1
Q ss_pred eeeecceEEEeccccccccceEEccCCcCCC--CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867 563 EFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG--PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640 (776)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 640 (776)
+++|++|++++|++++ .+|..+.. ++.|.+.+.+|.. +++|+.|++++|+++
T Consensus 356 ---------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 356 ---------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLR 409 (454)
T ss_dssp ---------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------
T ss_pred ---------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCC
Confidence 2267777777777776 45554433 2345555555543 468889999999988
Q ss_pred C--cCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867 641 G--KIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 674 (776)
Q Consensus 641 ~--~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 674 (776)
+ .+|. +++.|.+.+|.+.+..|.+...+
T Consensus 410 ~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 410 EFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ------------------------------------
T ss_pred ccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 6 4443 46777888888888777655443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.8e-36 Score=323.72 Aligned_cols=404 Identities=23% Similarity=0.302 Sum_probs=196.7
Q ss_pred CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCC-------------CEEeCCCCcCc
Q 041867 81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL-------------RILDVSSNQLT 147 (776)
Q Consensus 81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~ 147 (776)
..+|++|++++|.+ + .+|. +++++++|++|++++|++.+..|.+++++++| ++|++++|.++
T Consensus 10 ~~~L~~L~l~~n~l-~---~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-T---EMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccCch-h---hCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 45677777777777 3 4654 67777777777777777777777777776654 55555555544
Q ss_pred ccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcc
Q 041867 148 GSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227 (776)
Q Consensus 148 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 227 (776)
.+|. -.++|++|++++|.+++ ++. ..
T Consensus 85 -~lp~----~~~~L~~L~l~~n~l~~-lp~----~~-------------------------------------------- 110 (454)
T 1jl5_A 85 -SLPE----LPPHLESLVASCNSLTE-LPE----LP-------------------------------------------- 110 (454)
T ss_dssp -CCCS----CCTTCSEEECCSSCCSS-CCC----CC--------------------------------------------
T ss_pred -cCCC----CcCCCCEEEccCCcCCc-ccc----cc--------------------------------------------
Confidence 3333 12344555555554442 221 11
Q ss_pred cCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc
Q 041867 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD 307 (776)
Q Consensus 228 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 307 (776)
++|+.|++++|.+.+ ++. ..++|++|++++|.+.+ .+ .+..+++|++|++++|++++ +|..
T Consensus 111 --------~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--- 171 (454)
T 1jl5_A 111 --------QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--- 171 (454)
T ss_dssp --------TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---
T ss_pred --------CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---
Confidence 344445555544442 111 11456666666666665 23 46666777777777777663 4432
Q ss_pred cCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCC
Q 041867 308 VLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387 (776)
Q Consensus 308 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~ 387 (776)
.++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|.. .++|++|++++|.+. .+|
T Consensus 172 -~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~------------~lp 231 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE------------ELP 231 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS------------SCC
T ss_pred -cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC------------ccc
Confidence 3477777777777775 44 5777788888888888777 45542 347777775555443 344
Q ss_pred ccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccc
Q 041867 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN 467 (776)
Q Consensus 388 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~ 467 (776)
.++.+++|++|++++|++.+ +|. .+++|+.|++++|.+.+... . +.+|++|++++|++.+.
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~-~--~~~L~~L~ls~N~l~~l----------- 292 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE-L--PQSLTFLDVSENIFSGL----------- 292 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-C--CTTCCEEECCSSCCSEE-----------
T ss_pred -ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc-c--cCcCCEEECcCCccCcc-----------
Confidence 36777788888888887775 332 23677888888887775322 1 35667776666655421
Q ss_pred ccCChhhccCccCCEEEcccccCCccchhhhcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccc
Q 041867 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS 546 (776)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (776)
+. -.++|+.|++++|++++.. .+ ++|+.|++++|++.+ +|..
T Consensus 293 ---~~---~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~------------------------- 335 (454)
T 1jl5_A 293 ---SE---LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL------------------------- 335 (454)
T ss_dssp ---SC---CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC-------------------------
T ss_pred ---cC---cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc-------------------------
Confidence 10 0146777777777776421 23 467777777777764 2221
Q ss_pred cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccc--cCccccC
Q 041867 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIG--LIPSTFS 624 (776)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~ 624 (776)
+++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+.
T Consensus 336 -------------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 336 -------------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp -------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred -------------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 1257777777777763 443 35677777777777776 3344333
Q ss_pred CCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc--cCCCccccccccCcccccCCCCCCC
Q 041867 625 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNTFLCG 690 (776)
Q Consensus 625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~~~~l~~~~~~~n~~~c~ 690 (776)
. ++.|...+.+|.. +++|+.|++++|++++ .+|.+ +..+.+.+|.+.|.
T Consensus 381 ------~--L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 381 ------D--LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP 431 (454)
T ss_dssp ------E--EECCC------------------------------------------------------
T ss_pred ------h--hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence 2 2335555555543 4789999999999997 56653 45556677666554
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=332.22 Aligned_cols=306 Identities=21% Similarity=0.227 Sum_probs=180.5
Q ss_pred CCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEE
Q 041867 285 KRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSL 364 (776)
Q Consensus 285 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 364 (776)
++++.|++++|.+++..+..+.. +++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|...+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 34555555555555333333332 455555555555555444555555555555555555554 4444444445555555
Q ss_pred EccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCccc
Q 041867 365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIK 444 (776)
Q Consensus 365 ~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 444 (776)
++++|+ +.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+
T Consensus 110 ~Ls~n~-----------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------ 166 (477)
T 2id5_A 110 DISENK-----------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS------------ 166 (477)
T ss_dssp ECTTSC-----------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS------------
T ss_pred ECCCCc-----------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc------------
Confidence 533332 222344444555555555555555554444445555555555555554443
Q ss_pred EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcC
Q 041867 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN 524 (776)
Q Consensus 445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 524 (776)
..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+..|.....
T Consensus 167 ------------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 167 ------------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp ------------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ------------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 33445666677777777777777666666777777777777776655444332221
Q ss_pred CcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCcc
Q 041867 525 TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR 604 (776)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 604 (776)
..+|++|++++|.+++..+..|..+++
T Consensus 223 -----------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 223 -----------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp -----------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred -----------------------------------------------------CccccEEECcCCcccccCHHHhcCccc
Confidence 115677777777777555566777777
Q ss_pred CCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccC
Q 041867 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG 684 (776)
Q Consensus 605 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~ 684 (776)
|+.|+|++|.++++.+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++++.+++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 77777777777766666677777777777777777766677777777777777777777766555666666777777777
Q ss_pred CCCCCCCC
Q 041867 685 NTFLCGLP 692 (776)
Q Consensus 685 n~~~c~~~ 692 (776)
|||.|+|+
T Consensus 330 N~l~c~c~ 337 (477)
T 2id5_A 330 NPLACDCR 337 (477)
T ss_dssp SCEECSGG
T ss_pred CCccCccc
Confidence 77777764
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=323.18 Aligned_cols=348 Identities=20% Similarity=0.172 Sum_probs=242.0
Q ss_pred cCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeec
Q 041867 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNN 317 (776)
Q Consensus 238 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l 317 (776)
-+.++.+++++. .+|..+ .+.++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|+.|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEEC
Confidence 357888887776 566543 368999999999999998999999999999999999999766766665 899999999
Q ss_pred ccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCC
Q 041867 318 SMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ 397 (776)
Q Consensus 318 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~ 397 (776)
++|.+....+..|.++++|++|++++|.+. .++...+..+++|+.|++++|. +.+..+..|.++++|+
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~-----------l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND-----------LVYISHRAFSGLNSLE 155 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT-----------CCEECTTSSTTCTTCC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc-----------cceeChhhccCCCCCC
Confidence 999999777778899999999999999998 6666666789999999955554 4556778899999999
Q ss_pred EEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccC
Q 041867 398 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL 477 (776)
Q Consensus 398 ~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l 477 (776)
+|++++|.+++..+..|..+++|+.|++++|.+.+..+..+ ..+
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~------------------------------------~~l 199 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF------------------------------------KRL 199 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS------------------------------------CSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc------------------------------------ccC
Confidence 99999999998888889999999999999999886554444 344
Q ss_pred ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
++|+.|++++|...+..+.......+|+.|++++|++++..+..+..+
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------- 247 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------------------------- 247 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--------------------------------
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc--------------------------------
Confidence 445555555444433333333333455555555555543322223222
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
++|+.|+|++|.+++..+..|..+++|+.|+|++|+++++.|..|.++++|+.|+|++|
T Consensus 248 ---------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 248 ---------------------VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp ---------------------TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred ---------------------cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 24555555555555555555666666666666666666666666666666666666666
Q ss_pred ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++++..+..|..+++|+.|++++|++.|..+.. ..........+.++...|.+|
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence 666555555666666666666666666543321 111222334455555555443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-33 Score=304.80 Aligned_cols=260 Identities=28% Similarity=0.421 Sum_probs=154.4
Q ss_pred CCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCC
Q 041867 281 IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360 (776)
Q Consensus 281 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 360 (776)
+..+++|++|++++|.+.+ ++ .+. .+++|+.|++. +.+.+. ..+..+++|++|++++|.+. .++. +..+++
T Consensus 130 ~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~ 200 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISD-IS-ALS-GLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTN 200 (466)
T ss_dssp GTTCTTCSEEEEEEEEECC-CG-GGT-TCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTT
T ss_pred HcCCCCCCEEECCCCccCC-Ch-hhc-cCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC-CChh--hccCCC
Confidence 3344445555555554442 21 111 24455555543 222221 12556666777777776665 3432 335666
Q ss_pred CcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCC
Q 041867 361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP 440 (776)
Q Consensus 361 L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 440 (776)
|++|++++|.+. +..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 201 L~~L~l~~n~l~-----------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----- 260 (466)
T 1o6v_A 201 LESLIATNNQIS-----------DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----- 260 (466)
T ss_dssp CSEEECCSSCCC-----------CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-----
T ss_pred CCEEEecCCccc-----------cccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-----
Confidence 666665444432 2222 45566666666666666543 345566666666666666553211
Q ss_pred CcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC
Q 041867 441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP 520 (776)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 520 (776)
+.++++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+
T Consensus 261 ---------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 261 ---------------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp ---------------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred ---------------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 4556667777777776665443 6667777777777777664433
Q ss_pred CCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc
Q 041867 521 CFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG 600 (776)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 600 (776)
+.. +++|+.|++++|++++..| +.
T Consensus 305 -~~~-----------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 305 -ISN-----------------------------------------------------LKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp -GGG-----------------------------------------------------CTTCSEEECCSSCCSCCGG--GG
T ss_pred -hcC-----------------------------------------------------CCCCCEEECcCCcCCCchh--hc
Confidence 222 3367777777777776544 66
Q ss_pred cCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867 601 NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665 (776)
Q Consensus 601 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 665 (776)
.+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777777777777777765 457777777777777777776665 6777777777777777775
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-33 Score=304.17 Aligned_cols=357 Identities=19% Similarity=0.214 Sum_probs=204.1
Q ss_pred CCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCC
Q 041867 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184 (776)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 184 (776)
.++++++|++|++++|.+++. | .+..+++|++|++++|.++ .++ +..+++|++|++++|.+++ ++ +..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN-LD---VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence 567788888888888888854 5 6888888888888888887 443 7788888888888888774 22 56667
Q ss_pred CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCc
Q 041867 185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR 264 (776)
Q Consensus 185 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 264 (776)
+|++|++++|.+.. +| +..+++|+.|++++|++++ ++ ++.+++|+
T Consensus 107 ~L~~L~L~~N~l~~-----------------------------l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~ 151 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-----------------------------LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLT 151 (457)
T ss_dssp TCCEEECCSSCCSC-----------------------------CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCC
T ss_pred cCCEEECCCCcCCe-----------------------------ec--CCCCCcCCEEECCCCccce-ec---cccCCcCC
Confidence 77777776665431 11 3344555555555555543 11 13444444
Q ss_pred EEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCC
Q 041867 265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344 (776)
Q Consensus 265 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 344 (776)
.|++++|...+.. .+..++ +|+.|++++|.+++ +| +..+++|+.|++++|
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQT-------------------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCT-------------------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred EEECCCCCccccc--ccccCC-------------------------cCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 4444444222211 223333 34444444444332 12 334444555555555
Q ss_pred cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEE
Q 041867 345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILD 424 (776)
Q Consensus 345 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 424 (776)
.++ .++ +..+++|+.|++++|+++ + +| ++.+++|++|++++|.+++.. +..+++|+.|+
T Consensus 202 ~l~-~~~---l~~l~~L~~L~Ls~N~l~-----------~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~ 260 (457)
T 3bz5_A 202 NIT-KLD---LNQNIQLTFLDCSSNKLT-----------E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLH 260 (457)
T ss_dssp CCS-CCC---CTTCTTCSEEECCSSCCS-----------C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred cCC-eec---cccCCCCCEEECcCCccc-----------c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEe
Confidence 544 221 223444444443333322 2 22 444455555555555554432 23344455555
Q ss_pred ccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCC
Q 041867 425 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQL 504 (776)
Q Consensus 425 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 504 (776)
+++|++. .+ ++++|.+.+.+| +.++++|+.|++++|...+..|. ..++|
T Consensus 261 l~~n~L~-------------~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 261 CIQTDLL-------------EI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp CTTCCCS-------------CC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred ccCCCCC-------------EE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 4444322 22 333333333333 34567777777777765555442 23445
Q ss_pred CEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceE
Q 041867 505 QLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGL 584 (776)
Q Consensus 505 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 584 (776)
+.|++++| ++|++|
T Consensus 310 ~~L~l~~~------------------------------------------------------------------~~L~~L 323 (457)
T 3bz5_A 310 TELDLSQN------------------------------------------------------------------PKLVYL 323 (457)
T ss_dssp SCCCCTTC------------------------------------------------------------------TTCCEE
T ss_pred eEechhhc------------------------------------------------------------------ccCCEE
Confidence 55555444 267888
Q ss_pred EccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867 585 DLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 585 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 664 (776)
++++|++++. + +..+++|+.|++++|+++++ +.|+.|++++|.+.+. ..+..|..+++++|+++
T Consensus 324 ~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 324 YLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp ECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred ECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 8888888874 2 77888888888888888753 4566677888888765 23445777888888888
Q ss_pred ccCCCc
Q 041867 665 GEIPEW 670 (776)
Q Consensus 665 ~~~p~~ 670 (776)
|.+|..
T Consensus 388 g~ip~~ 393 (457)
T 3bz5_A 388 IAVSPD 393 (457)
T ss_dssp EECCTT
T ss_pred EEcChh
Confidence 888764
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-32 Score=301.35 Aligned_cols=345 Identities=24% Similarity=0.327 Sum_probs=276.3
Q ss_pred CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
+++++.|+++++.+. .+|. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +. .+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GT-TCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hc-CCCCCCE
Confidence 467788888888776 3454 3678888888888888887654 7888888888888888874433 33 3788888
Q ss_pred eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
|++++|.+.+.. .+..+++|++|++++|.+. .++. +..+++|+.|++++ .+ .+. ..+..++
T Consensus 117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~-----------~~~--~~~~~l~ 177 (466)
T 1o6v_A 117 LTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QV-----------TDL--KPLANLT 177 (466)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SC-----------CCC--GGGTTCT
T ss_pred EECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cc-----------cCc--hhhccCC
Confidence 888888887543 2788889999999998887 5553 45688888888642 22 222 2378888
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
+|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ ...+++|++|++++|++.+ + ..+
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------~-~~l 239 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--------------I-GTL 239 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------C-GGG
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------c-hhh
Confidence 999999999988754 347888899999999998886654 3337889999888777652 1 357
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------ 285 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------ 285 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence 889999999999999997655 8899999999999999986544 333
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 286 -----------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 286 -----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3489999999999997654 8899999999999999998866 788999999999
Q ss_pred cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCC
Q 041867 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689 (776)
Q Consensus 635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c 689 (776)
++|++++. ..+..+++|+.|++++|++++..| +..++.++.+++++|++..
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999965 468999999999999999998877 6889999999999998876
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-32 Score=299.26 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=88.4
Q ss_pred CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
+++|++|++++|...+.++ +..+++|+.|++++|.+++.. +..+++|+.|++++|.+++. + +. .+++|+.
T Consensus 147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~ 216 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTF 216 (457)
T ss_dssp CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSE
T ss_pred CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c--cc-cCCCCCE
Confidence 3444444444443333332 245555666666666555531 55566666666666666532 2 22 2567777
Q ss_pred eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
|++++|.+++ +| +..+++|+.|++++|+++ .+|. ..+++|+.|++++|+
T Consensus 217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~------------------------ 265 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTD------------------------ 265 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCC------------------------
T ss_pred EECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCC------------------------
Confidence 7777777775 34 667788888888888887 4442 246788888865554
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccC
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 431 (776)
|+.|++++|.+.+.+| +..+++|+.|++++|...
T Consensus 266 -L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 266 -LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp -CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred -CCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 3445555555444333 345566666666666543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=300.09 Aligned_cols=335 Identities=22% Similarity=0.256 Sum_probs=190.7
Q ss_pred CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
+++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------------- 107 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--------------- 107 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC---------------
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc---------------
Confidence 466777777777665 4555555677777777777777666655566666666666666665553
Q ss_pred eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
..|..|..+++|++|++++|.++ .+|..++..+++|++|++++|+ +.+..+..+..++
T Consensus 108 ----------~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~~~~l~ 165 (390)
T 3o6n_A 108 ----------LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-----------LERIEDDTFQATT 165 (390)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-----------CCBCCTTTTSSCT
T ss_pred ----------CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCc-----------cCccChhhccCCC
Confidence 22333444444444444444444 4444444444444444432222 2223344444455
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
+|++|++++|.+++.. +..+++|+.+++++|.+.+.. .+.+|++|++++|.+... |.
T Consensus 166 ~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~--------------~~-- 222 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RG-- 222 (390)
T ss_dssp TCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE--------------EC--
T ss_pred CCCEEECCCCcCCccc---cccccccceeecccccccccC----CCCcceEEECCCCeeeec--------------cc--
Confidence 5555555555544321 333445555555555444211 123445554444443311 11
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..++
T Consensus 223 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------- 272 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---------------------------- 272 (390)
T ss_dssp CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------------
T ss_pred cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc----------------------------
Confidence 1135666777777766643 3566667777777777776665555554433
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+|++|++++|++++ +|..+..+++|++|+|++|+++++ |..+..+++|+.|++
T Consensus 273 -------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 273 -------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 325 (390)
T ss_dssp -------------------------SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred -------------------------cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEEC
Confidence 67777777777663 355556677777777777777744 445666777888888
Q ss_pred cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++|+++.. + +..+++|+.|++++|++.+.... ..+..+....+.+++..|.++
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 88887744 2 56677888888888888764322 234455566667777777654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=292.70 Aligned_cols=316 Identities=22% Similarity=0.210 Sum_probs=266.0
Q ss_pred CCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCc
Q 041867 283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 362 (776)
Q Consensus 283 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 362 (776)
.+++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3578899999999987 677766666899999999999999887789999999999999999998 67777777899999
Q ss_pred EEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCc
Q 041867 363 SLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS 442 (776)
Q Consensus 363 ~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 442 (776)
+|++++|++ +...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+.. ....++
T Consensus 121 ~L~L~~n~l-----------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~ 187 (390)
T 3o6n_A 121 VLVLERNDL-----------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187 (390)
T ss_dssp EEECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred EEECCCCcc-----------CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence 999666654 4445556789999999999999999888889999999999999999998653 223688
Q ss_pred ccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCC
Q 041867 443 IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCF 522 (776)
Q Consensus 443 L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 522 (776)
|+++++++|.+.+ +...++|+.|++++|.+..... ...++|+.|++++|++.+. ..+
T Consensus 188 L~~L~l~~n~l~~------------------~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 188 LFHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp CSEEECCSSCCSE------------------EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred cceeecccccccc------------------cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH
Confidence 9999888887652 2334689999999999986643 2357899999999998753 223
Q ss_pred cCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccC
Q 041867 523 DNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNL 602 (776)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 602 (776)
.. +++|++|++++|.+.+..|..|..+
T Consensus 245 ~~-----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 245 LN-----------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp GG-----------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cC-----------------------------------------------------CCCccEEECCCCcCCCcChhHcccc
Confidence 22 4589999999999998889999999
Q ss_pred ccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccc
Q 041867 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY 682 (776)
Q Consensus 603 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~ 682 (776)
++|+.|+|++|+++++ |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. | +..+++++.+++
T Consensus 272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 9999999999999975 566788999999999999998 5677788899999999999999864 3 467889999999
Q ss_pred cCCCCCCCCCCC
Q 041867 683 EGNTFLCGLPLP 694 (776)
Q Consensus 683 ~~n~~~c~~~~~ 694 (776)
++|||.|+|...
T Consensus 347 ~~N~~~~~~~~~ 358 (390)
T 3o6n_A 347 SHNDWDCNSLRA 358 (390)
T ss_dssp CSSCEEHHHHHH
T ss_pred CCCCccchhHHH
Confidence 999999987543
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-32 Score=284.36 Aligned_cols=261 Identities=34% Similarity=0.528 Sum_probs=212.1
Q ss_pred CCCCEEEccCCcCCC--cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCC
Q 041867 334 KFLQILDLSNNHLTG--EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIP 411 (776)
Q Consensus 334 ~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 411 (776)
.+++.|++++|.+.+ .+|..+. .+++|++|++++ .|.+.+.+|..|+.+++|++|++++|.+.+..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~----------~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGG----------INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEE----------ETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCC----------CCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 456777777777765 5665443 466677666442 133334566666666666777766666666666
Q ss_pred cccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCC
Q 041867 412 VEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491 (776)
Q Consensus 412 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 491 (776)
..|..+++|++|++++|.+. +..|..+..+++|++|++++|+++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCE
T ss_pred HHHhCCCCCCEEeCCCCccC------------------------------------CcCChHHhcCCCCCeEECcCCccc
Confidence 66666666666666666554 356677888999999999999999
Q ss_pred ccchhhhcCCC-CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867 492 GEVLVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570 (776)
Q Consensus 492 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (776)
+..|..+..++ +|+.|++++|++.+..|..+..+
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--------------------------------------------- 197 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------------------------------------- 197 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---------------------------------------------
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---------------------------------------------
Confidence 88899999998 99999999999998888766542
Q ss_pred EEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCC
Q 041867 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 650 (776)
Q Consensus 571 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 650 (776)
.|+.|++++|.+++..|..|..+++|+.|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+
T Consensus 198 ---------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 198 ---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp ---------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ---------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 389999999999999999999999999999999999977665 8889999999999999999999999999
Q ss_pred CCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCC
Q 041867 651 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 697 (776)
Q Consensus 651 ~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~ 697 (776)
++|+.|++++|++++.+|.. ..+++++.+++++||+.|+.|+..|.
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred cCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence 99999999999999999996 88999999999999999998877773
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=308.33 Aligned_cols=335 Identities=21% Similarity=0.217 Sum_probs=197.2
Q ss_pred CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867 235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314 (776)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 314 (776)
+.+++.++++++.+. .+|..++.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+.. +++|+.
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC-CCCCCE
Confidence 456777777777665 455555567777777777777777666666666666666666666665332222222 444444
Q ss_pred eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394 (776)
Q Consensus 315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 394 (776)
|++++|.+.+..+..|..+++|++|++++|.+. +..|..|..++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~ 171 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE------------------------------------RIEDDTFQATT 171 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------------------BCCTTTTTTCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC------------------------------------CCChhhhhcCC
Confidence 444444444333333344444444444444444 33334444444
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
+|++|++++|.+.+.. +..+++|+.|++++|.+.+.. .+.+|++|++++|.+... +..
T Consensus 172 ~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~--------------~~~- 229 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RGP- 229 (597)
T ss_dssp TCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE--------------ECS-
T ss_pred cCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc--------------ccc-
Confidence 4444444444444321 223344444555544443211 123444554444443311 110
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..|..++
T Consensus 230 -~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------------- 278 (597)
T 3oja_B 230 -VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---------------------------- 278 (597)
T ss_dssp -CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------------
T ss_pred -cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc----------------------------
Confidence 124677777777776653 4566677777777777777666665555433
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus 279 -------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 279 -------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL 331 (597)
T ss_dssp -------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred -------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEEC
Confidence 67777777777764 45556677888888888888874 4556677888888888
Q ss_pred cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++|++++. | +..+++|+.|++++|++.|.... ..+..+....+.+++..|+.+
T Consensus 332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 88888754 2 56678888999999998875433 234556666677888888753
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.2e-32 Score=304.85 Aligned_cols=313 Identities=22% Similarity=0.211 Sum_probs=264.8
Q ss_pred CCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867 284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363 (776)
Q Consensus 284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 363 (776)
+.+++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+.
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 467888889888887 566666656889999999999999888889999999999999999998 677777778999999
Q ss_pred EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867 364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 443 (776)
Q Consensus 364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 443 (776)
|++++|.+ ++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+... ..+++|
T Consensus 128 L~L~~n~l-----------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L 194 (597)
T 3oja_B 128 LVLERNDL-----------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL 194 (597)
T ss_dssp EECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTC
T ss_pred EEeeCCCC-----------CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhh
Confidence 99666554 45566668999999999999999999999999999999999999999987532 236789
Q ss_pred cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867 444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD 523 (776)
Q Consensus 444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 523 (776)
+.+++++|.+.+ +...++|+.|++++|.++...+.. .++|+.|++++|.+++. ..+.
T Consensus 195 ~~L~l~~n~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 195 FHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp SEEECCSSCCSE------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGG
T ss_pred hhhhcccCcccc------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhc
Confidence 999888876652 234568999999999998665432 36899999999999853 3333
Q ss_pred CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867 524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603 (776)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 603 (776)
. +++|+.|+|++|.+.+..|..|..++
T Consensus 252 ~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 252 N-----------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp G-----------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred c-----------------------------------------------------CCCCCEEECCCCccCCCCHHHhcCcc
Confidence 3 45899999999999999999999999
Q ss_pred cCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCccccc
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYE 683 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~ 683 (776)
+|+.|+|++|.++++ |..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. +..++.++.++++
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 999999999999975 667788999999999999998 67778889999999999999998653 4567899999999
Q ss_pred CCCCCCCCC
Q 041867 684 GNTFLCGLP 692 (776)
Q Consensus 684 ~n~~~c~~~ 692 (776)
+|||.|+|.
T Consensus 354 ~N~~~~~~~ 362 (597)
T 3oja_B 354 HNDWDCNSL 362 (597)
T ss_dssp SSCEEHHHH
T ss_pred CCCCCChhH
Confidence 999999874
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=6.4e-31 Score=277.12 Aligned_cols=305 Identities=21% Similarity=0.290 Sum_probs=184.0
Q ss_pred cCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCE
Q 041867 259 NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338 (776)
Q Consensus 259 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 338 (776)
.+++|+.|+++++.+.... .+..+++|++|++++|.+++ ++. + ..+++|++|++++|.+... +.+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~-~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD-ISP-L-SNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCcccc-chh-h-hcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 3444455555544444321 24445555555555555542 222 2 2245555555555555432 24566666666
Q ss_pred EEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCC
Q 041867 339 LDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD 418 (776)
Q Consensus 339 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 418 (776)
|++++|.+. .++. +..+++|+.|++++|... . .+..+..+++|++|++++|.+.+..+ +..++
T Consensus 115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~-----------~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~ 177 (347)
T 4fmz_A 115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNL-----------S-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT 177 (347)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTC-----------C-CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred EECcCCccc-Cchh--hccCCceeEEECCCCCCc-----------c-cccchhhCCCCcEEEecCCCcCCchh--hccCC
Confidence 666666666 4444 345666666665555322 1 22236666667777777666664333 66666
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhh
Q 041867 419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL 498 (776)
Q Consensus 419 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 498 (776)
+|+.|++++|.+.+..+ ...+.+|+.+++++|.+.+ ..+ +..+++|+.|++++|.+++..+ +
T Consensus 178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-------------ITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------CGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCEEEccCCccccccc-ccCCCccceeecccCCCCC-------------Cch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 67777777766654332 2225556666555554431 111 5667778888888887776544 7
Q ss_pred cCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccc
Q 041867 499 CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVL 578 (776)
Q Consensus 499 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (776)
..+++|++|++++|.+.+. ..+.. +
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l 264 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------L 264 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------C
T ss_pred hcCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------C
Confidence 7778888888888877643 12222 3
Q ss_pred cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 658 (776)
++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..| +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 4778888888887754 457777888888888888877777777788888888888888876555 677788888888
Q ss_pred ccccCc
Q 041867 659 AYNNLS 664 (776)
Q Consensus 659 ~~N~l~ 664 (776)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888775
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.6e-30 Score=272.43 Aligned_cols=307 Identities=21% Similarity=0.318 Sum_probs=256.3
Q ss_pred CCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCC
Q 041867 280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359 (776)
Q Consensus 280 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 359 (776)
.+..+++|+.|+++++.+. .++. +. .+++|++|++++|.+.+. +. +..+++|++|++++|.++ .++. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence 3456789999999999997 4553 33 388999999999999854 33 899999999999999998 6653 56799
Q ss_pred CCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC
Q 041867 360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH 439 (776)
Q Consensus 360 ~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 439 (776)
+|++|++++|.+. + .+. +..+++|++|++++|...... ..+..+++|++|++++|.+....+ ...
T Consensus 111 ~L~~L~l~~n~i~-----------~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 175 (347)
T 4fmz_A 111 NLRELYLNEDNIS-----------D-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IAN 175 (347)
T ss_dssp TCSEEECTTSCCC-----------C-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred cCCEEECcCCccc-----------C-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hcc
Confidence 9999997777654 2 233 889999999999999766444 448999999999999999886554 334
Q ss_pred CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCC
Q 041867 440 PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519 (776)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 519 (776)
+++|++|++++|.+.+ .+. +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+
T Consensus 176 l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIED--------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp CTTCSEEECTTSCCCC--------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCEEEccCCcccc--------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 8899999888887652 222 7889999999999999997655 8889999999999999986544
Q ss_pred CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhh
Q 041867 520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI 599 (776)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 599 (776)
+.. +++|++|++++|.+++. ..+
T Consensus 239 --~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 239 --LAN-----------------------------------------------------LSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp --GTT-----------------------------------------------------CTTCCEEECCSSCCCCC--GGG
T ss_pred --hhc-----------------------------------------------------CCCCCEEECCCCccCCC--hhH
Confidence 333 34899999999999864 578
Q ss_pred ccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCc
Q 041867 600 GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 679 (776)
Q Consensus 600 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~ 679 (776)
..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|+.+..+++|+.|++++|++++..| +..++.++.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 9999999999999999986 468899999999999999999999999999999999999999998766 678999999
Q ss_pred ccccCCCC
Q 041867 680 SSYEGNTF 687 (776)
Q Consensus 680 ~~~~~n~~ 687 (776)
+++++|+.
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 99999975
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.9e-30 Score=266.95 Aligned_cols=287 Identities=22% Similarity=0.293 Sum_probs=158.8
Q ss_pred CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 365 (776)
+++.++++++.+. .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4666777766665 5555442 46777777777777666667777777777777777776 44444455677777777
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCC--CCCCCCCCCcc
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--SLPSCFHPLSI 443 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~L 443 (776)
+++|++. .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.+.. ..+..+...+|
T Consensus 109 L~~n~l~------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 109 ISKNHLV------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp CCSSCCC------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred CCCCcCC------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 5555543 2333332 677777777777776666667777777777777777652 33333332244
Q ss_pred cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867 444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD 523 (776)
Q Consensus 444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 523 (776)
++|++++|++.+ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+.
T Consensus 175 ~~L~l~~n~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 175 NYLRISEAKLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCCBCCSSBCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CEEECcCCCCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 444444443331 111111 3555555555555555545555555555555555555544443333
Q ss_pred CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867 524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603 (776)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 603 (776)
.++ +|++|++++|+++ .+|..+..++
T Consensus 239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence 322 4555555555555 4444455555
Q ss_pred cCCeeecccccccccCccccCCC------CCCCEEECcCCccC--CcCCccccCCCCCCEEecccc
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYN 661 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N 661 (776)
+|+.|++++|+++++.+..|... .+|+.|++++|++. ...|..|..+++|+.+++++|
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 55555555555555544444332 34455555555554 344444555555555555544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=264.10 Aligned_cols=126 Identities=22% Similarity=0.325 Sum_probs=59.0
Q ss_pred cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL 366 (776)
Q Consensus 287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 366 (776)
++.++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence 444444444443 3333221 34455555555555444444555555555555555554 332222334555555554
Q ss_pred cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccC
Q 041867 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431 (776)
Q Consensus 367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 431 (776)
++|+++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 108 s~n~l~------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 108 SKNQLK------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp CSSCCS------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCcCC------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 444332 1222221 45555555555555544445555555555555555543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-29 Score=260.64 Aligned_cols=288 Identities=24% Similarity=0.278 Sum_probs=146.5
Q ss_pred CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316 (776)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 316 (776)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------ 91 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence 4566666666554 344332 245555555555555554445555555555555555554
Q ss_pred cccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCC
Q 041867 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL 396 (776)
Q Consensus 317 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L 396 (776)
+..|..|..+++|++|++++|.++ .+|..++ ++|++|++++|+ +++..+..|..+++|
T Consensus 92 -------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~-----------i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 92 -------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNR-----------IRKVPKGVFSGLRNM 149 (332)
T ss_dssp -------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSC-----------CCCCCSGGGSSCSSC
T ss_pred -------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCc-----------cCccCHhHhCCCccC
Confidence 333444444445555555555444 4444332 344444433222 222333344445555
Q ss_pred CEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 397 QYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 397 ~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
++|++++|.++. ..+..+..+ +|+.|++++|.+.+.....+ .+|++|++++|. +++..+..+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-------------i~~~~~~~l 213 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK-------------IQAIELEDL 213 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSC-------------CCCCCTTSS
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCc-------------CCccCHHHh
Confidence 555555555432 334444444 55555555555544322211 344444333332 223344455
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
.++++|+.|++++|.+++..+..+..+++|+.|++++|++. .+|..+..+
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l----------------------------- 263 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL----------------------------- 263 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC-----------------------------
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC-----------------------------
Confidence 56666666666666666655556666666666666666665 333333332
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccC------ccCCeeeccccccc--ccCccccCCC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNL------TRIQTLNLSHNDLI--GLIPSTFSNL 626 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l 626 (776)
++|+.|++++|++++..+..|... +.|+.|++++|.+. +..|..|..+
T Consensus 264 ------------------------~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 264 ------------------------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp ------------------------TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred ------------------------ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 256666666666665555555432 45666677776665 4566666667
Q ss_pred CCCCEEECcCCc
Q 041867 627 KHVESLDLSNNK 638 (776)
Q Consensus 627 ~~L~~L~Ls~N~ 638 (776)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777776664
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.9e-30 Score=266.64 Aligned_cols=251 Identities=30% Similarity=0.453 Sum_probs=167.4
Q ss_pred ccceeecccccCcc--CCCccCCCCCCCCEEEccC-CcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCC
Q 041867 311 SLYLFNNSMNALDG--SIPSSLGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387 (776)
Q Consensus 311 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~ 387 (776)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+. .+++|++|++++|. +++..|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-----------l~~~~p 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTN-----------VSGAIP 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEEC-----------CEEECC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCe-----------eCCcCC
Confidence 34444444454444 4455555566666666663 555555555433 46666666643333 334456
Q ss_pred ccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccc
Q 041867 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN 467 (776)
Q Consensus 388 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~ 467 (776)
..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----------------------------------- 163 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG----------------------------------- 163 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-----------------------------------
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-----------------------------------
Confidence 666667777777777777776677777777777777777766653
Q ss_pred ccCChhhccCc-cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccc
Q 041867 468 GSIPDWVDGLS-QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS 546 (776)
Q Consensus 468 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (776)
.+|..+..++ +|+.|++++|.+++..|..+..++ |+.|++++|++.+..|..+..++
T Consensus 164 -~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------- 221 (313)
T 1ogq_A 164 -AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------- 221 (313)
T ss_dssp -ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------
T ss_pred -cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------
Confidence 2333444554 666666666666666666666665 77777777777666655554433
Q ss_pred cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCC
Q 041867 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL 626 (776)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 626 (776)
+|+.|++++|.+++.+|. +..+++|++|+|++|.+++..|..|..+
T Consensus 222 ---------------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 222 ---------------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp ---------------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ---------------------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 677777777777755554 7778888888888888888888888888
Q ss_pred CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867 627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665 (776)
Q Consensus 627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 665 (776)
++|+.|++++|++++.+|+. ..+++|+.+++++|+..+
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 88889999999888888876 778888889999998443
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=272.29 Aligned_cols=247 Identities=22% Similarity=0.252 Sum_probs=142.6
Q ss_pred CCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccC
Q 041867 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC 415 (776)
Q Consensus 336 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 415 (776)
...++.++..++ .+|..+. ++++.|++++|+ +.+..+..|.++++|++|++++|.+.+..+..|.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~-----------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQ-----------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCC-----------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCc-----------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 345666666666 6665443 456666644433 3344556666777777777777777766666777
Q ss_pred CCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc-cCCcc
Q 041867 416 QLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGE 493 (776)
Q Consensus 416 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 493 (776)
++++|++|++++|.+....+..+. +.+|++|++++|++. ...+..|.++++|+.|++++| .+...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------------~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------------SIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-------------ccCHHHhhhCcccCEeCCCCCCCccee
Confidence 777777777777776654443333 344444433333222 233344556666666666663 34444
Q ss_pred chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867 494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573 (776)
Q Consensus 494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
.+..|.++++|++|++++|+++.. |. +..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------- 205 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP------------------------------------------------- 205 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence 444566666666666666666532 11 211
Q ss_pred ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCC
Q 041867 574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653 (776)
Q Consensus 574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 653 (776)
+++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|+++...+..|..+++|
T Consensus 206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 2356666666666665556666666666666666666666666666666666666666666665555555556666
Q ss_pred CEEecccccCcc
Q 041867 654 EVFSVAYNNLSG 665 (776)
Q Consensus 654 ~~L~l~~N~l~~ 665 (776)
+.|++++|++.|
T Consensus 282 ~~L~L~~Np~~C 293 (440)
T 3zyj_A 282 ERIHLHHNPWNC 293 (440)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEcCCCCccC
Confidence 666666666654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-28 Score=256.42 Aligned_cols=268 Identities=22% Similarity=0.257 Sum_probs=171.7
Q ss_pred CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 365 (776)
.++.|++++|.+++..+..+.. +++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..++ ++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 4455555555554322222222 455555555555555555666667777777777777776 6665543 5677777
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 443 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 443 (776)
+++|+ +++..+..|.++++|++|++++|.+.. ..+..|..+++|++|++++|.+......
T Consensus 128 l~~n~-----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------- 189 (330)
T 1xku_A 128 VHENE-----------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------- 189 (330)
T ss_dssp CCSSC-----------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------
T ss_pred CCCCc-----------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------
Confidence 44443 334455567777777777777777753 5666777788888888888877632211
Q ss_pred cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867 444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD 523 (776)
Q Consensus 444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 523 (776)
+ .++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+.
T Consensus 190 ------------------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 190 ------------------------------L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp ------------------------------C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred ------------------------------c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 1 14566666666666666666666777777777777777665555554
Q ss_pred CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867 524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603 (776)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 603 (776)
.++ +|++|++++|+++ .+|..+..++
T Consensus 238 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 238 NTP-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp GST-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCS
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCC
Confidence 433 6777777777776 5666677777
Q ss_pred cCCeeecccccccccCccccCC------CCCCCEEECcCCccCC--cCCccccCCCCCCEEeccccc
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN 662 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~ 662 (776)
+|++|++++|+++++.+..|.. ..+|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7888888888777777666643 3678888888888763 566778888888888888874
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.7e-29 Score=271.61 Aligned_cols=249 Identities=19% Similarity=0.217 Sum_probs=150.7
Q ss_pred CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ 416 (776)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 416 (776)
..++.++..++ .+|..+. ++++.|++++| .+++..+..|.++++|++|++++|.+.+..+..|.+
T Consensus 57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n-----------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMEN-----------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC---TTCSEEECCSS-----------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cEEEECCCCcC-ccCCCCC---CCccEEECcCC-----------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 34555555555 4554322 35555553333 233344555666666666666666666555566666
Q ss_pred CCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCCccc
Q 041867 417 LDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEV 494 (776)
Q Consensus 417 l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 494 (776)
+++|++|++++|.+....+..+. +++|++|++++|++. ...+..|.++++|+.|++++ |.+....
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------------SIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-------------eeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 66666666666666544444333 444444433333322 23344566777777777777 4455555
Q ss_pred hhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEec
Q 041867 495 LVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574 (776)
Q Consensus 495 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
+..|.++++|+.|++++|++.+. | .+..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-------------------------------------------------- 216 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-------------------------------------------------- 216 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------------------------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-c-cccc--------------------------------------------------
Confidence 55677777777777777777643 2 1222
Q ss_pred cccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCC
Q 041867 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654 (776)
Q Consensus 575 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 654 (776)
+++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus 217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 23677777777777766677777777777777777777777777777777777777777777766666666677777
Q ss_pred EEecccccCcccCC
Q 041867 655 VFSVAYNNLSGEIP 668 (776)
Q Consensus 655 ~L~l~~N~l~~~~p 668 (776)
.|++++|++.|...
T Consensus 294 ~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 294 ELHLHHNPWNCDCD 307 (452)
T ss_dssp EEECCSSCEECSTT
T ss_pred EEEccCCCcCCCCC
Confidence 77777777765433
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-32 Score=302.83 Aligned_cols=368 Identities=16% Similarity=0.137 Sum_probs=265.2
Q ss_pred CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCc----CCCCCCCCCCcCEEEceeccCcccCChhhhccCc-
Q 041867 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP----FRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP- 310 (776)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~- 310 (776)
++|++|+++++++++.....++..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888877655555457888888888888887753 2345666788999999988887555555555455
Q ss_pred ---ccceeecccccCcc----CCCccCCCCCCCCEEEccCCcCCCcCchhhhh----cCCCCcEEEccCccccceEecCC
Q 041867 311 ---SLYLFNNSMNALDG----SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQSLALSNNNLQEGLYLNN 379 (776)
Q Consensus 311 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~ls~n~l~~~l~l~~ 379 (776)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----- 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----- 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence 69999999998874 44778888999999999999887443433332 345799999777665410
Q ss_pred CcCCCCCCccccCCCCCCEEeccCCccccCCCcccC-----CCCCCcEEEccccccCCCC----CCCCC-CCcccEEEcC
Q 041867 380 NSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGSL----PSCFH-PLSIKQVHLS 449 (776)
Q Consensus 380 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~----~~~~~-~~~L~~L~l~ 449 (776)
. ...++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.... +..+. +++|++|+++
T Consensus 158 -~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 -S-CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp -G-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred -H-HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 0 001355667789999999999998765444443 3668999999999887532 22332 6889999888
Q ss_pred CcccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCC
Q 041867 450 KNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 525 (776)
Q Consensus 450 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 525 (776)
+|.+.... +....+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+..+...
T Consensus 236 ~n~l~~~~--------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 236 SNKLGDVG--------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp SSBCHHHH--------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CCcCChHH--------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 87664211 0001123344688999999999999865 46667779999999999998864333222111
Q ss_pred cccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----Chhhhcc
Q 041867 526 TLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIGN 601 (776)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~ 601 (776)
. ....++|++|++++|.+++. ++..+..
T Consensus 308 l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 308 L------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp H------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred h------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 0 00124799999999999865 4667788
Q ss_pred CccCCeeecccccccccCccccCC-----CCCCCEEECcCCccCC----cCCccccCCCCCCEEecccccCccc
Q 041867 602 LTRIQTLNLSHNDLIGLIPSTFSN-----LKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE 666 (776)
Q Consensus 602 l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~ 666 (776)
+++|++|++++|.+++..+..+.. .++|++|++++|+++. .+|..+..+++|+.|++++|++++.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 899999999999998765554432 6799999999999986 6788888899999999999999853
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.3e-32 Score=298.21 Aligned_cols=348 Identities=20% Similarity=0.142 Sum_probs=213.6
Q ss_pred CccccCCCCcCEEEcCCCCCcccCChHHhhcCC----CCcEEEccCCCCcC----cCCCCCCCCCCcCEEEceeccCccc
Q 041867 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGH 300 (776)
Q Consensus 229 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~ 300 (776)
+..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.++. ..+..+..+++|++|++++|.+++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 344556667777777777766555555545555 57777777777764 2355667778888888888877644
Q ss_pred CChhhhc----cCcccceeecccccCccCC----CccCCCCCCCCEEEccCCcCCCcCchhhhh----cCCCCcEEEccC
Q 041867 301 IPIEIGD----VLPSLYLFNNSMNALDGSI----PSSLGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQSLALSN 368 (776)
Q Consensus 301 ~~~~~~~----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~ls~ 368 (776)
.+..+.. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 3333332 1345777777777766432 344555677777777777765332222222 245777777555
Q ss_pred ccccceEecCCCcCCCC----CCccccCCCCCCEEeccCCccccCC-----CcccCCCCCCcEEEccccccCCCCCCCCC
Q 041867 369 NNLQEGLYLNNNSLSGK----IPRWLGNLTWLQYIIMPNNHLEGPI-----PVEFCQLDLLQILDISDNNISGSLPSCFH 439 (776)
Q Consensus 369 n~l~~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 439 (776)
|.+. +. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++....
T Consensus 209 n~l~-----------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~---- 273 (461)
T 1z7x_W 209 CGVT-----------SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC---- 273 (461)
T ss_dssp SCCB-----------TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----
T ss_pred CCCc-----------HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----
Confidence 5443 21 3445556677777777777665432 2222345666666666665542100
Q ss_pred CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcC-----CCCCCEEeCCCCcc
Q 041867 440 PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-----LNQLQLLDLSNNNL 514 (776)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l 514 (776)
..++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+
T Consensus 274 ----------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 274 ----------------------------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp ----------------------------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred ----------------------------HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 013455667788888888888887554444432 36888888888887
Q ss_pred cCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC
Q 041867 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 594 (776)
++.....+...- ..+++|++|++++|.+++.
T Consensus 326 ~~~~~~~l~~~l-------------------------------------------------~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 326 TAACCSHFSSVL-------------------------------------------------AQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp BGGGHHHHHHHH-------------------------------------------------HHCSSCCEEECCSSBCHHH
T ss_pred chHHHHHHHHHH-------------------------------------------------hhCCCccEEEccCCccccc
Confidence 643211111000 1134788888888888755
Q ss_pred Chhhhcc-----CccCCeeecccccccc----cCccccCCCCCCCEEECcCCccCCcCCcc----cc-CCCCCCEEeccc
Q 041867 595 IPPQIGN-----LTRIQTLNLSHNDLIG----LIPSTFSNLKHVESLDLSNNKLNGKIPHQ----LV-ELKTLEVFSVAY 660 (776)
Q Consensus 595 ~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~l~~ 660 (776)
.+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|++++..... +. ...+|+.|++.+
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 5554443 6788899999998886 56777778888999999999887532221 11 234688888887
Q ss_pred ccCcccCC
Q 041867 661 NNLSGEIP 668 (776)
Q Consensus 661 N~l~~~~p 668 (776)
+.+....+
T Consensus 437 ~~~~~~~~ 444 (461)
T 1z7x_W 437 IYWSEEME 444 (461)
T ss_dssp CCCCHHHH
T ss_pred cccCHHHH
Confidence 77764333
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.7e-29 Score=259.37 Aligned_cols=287 Identities=22% Similarity=0.258 Sum_probs=209.2
Q ss_pred ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392 (776)
Q Consensus 313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~ 392 (776)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|...+.++++|++|++++|.+... +..+..+..
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHS
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcc---------cCccccccc
Confidence 45677777776 4454432 57888888888887 77777777778888888666655310 112445566
Q ss_pred CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..
T Consensus 77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------~~ 120 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------------------FS 120 (306)
T ss_dssp CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------------------TT
T ss_pred ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------------------ch
Confidence 7778888888877773 45557777777777777777653211 13
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------------------------- 175 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------------------- 175 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------------
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-------------------------
Confidence 46778899999999999998888889999999999999999876 4566665543
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 631 (776)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 176 ----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 176 ----------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp ----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred ----------------------------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 8999999999999888888999999999999999999888888899999999
Q ss_pred EECcCCccCCcCCccccCCC-CCCEEecccccCcccCCC-cccc-ccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867 632 LDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WTAQ-FATFNESSYEGNTFLCGLPLPICRSPATMSEASIG 708 (776)
Q Consensus 632 L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~-~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~ 708 (776)
|++++|++++..|..+..++ +|+.|++++|++++..+. ++.. +...+.+..+.+.. .|..|....+.++.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~ 300 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVL 300 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceee
Confidence 99999999988888888884 899999999999875432 1111 22233344444444 45556655555443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=260.78 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=122.5
Q ss_pred CccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCc
Q 041867 387 PRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYN 464 (776)
Q Consensus 387 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n 464 (776)
+..|.++++|++|++++|.+++..+..|..+++|++|++++|++..... ..+. +++|++|++++|.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------ 160 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------ 160 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------
Confidence 3344444445555555554443333334445555555555554443322 1222 3333333333321
Q ss_pred cccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867 465 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544 (776)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (776)
.+....+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++....+..+..
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------- 220 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-------------------- 220 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--------------------
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh--------------------
Confidence 111233455677777888888888877777777777777888888777764322111111
Q ss_pred cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc---cCccCCeeeccccccccc---
Q 041867 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGL--- 618 (776)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~--- 618 (776)
+++|+.|++++|.+++..+..+. ..+.++.++++++.+.+.
T Consensus 221 ---------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 221 ---------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ---------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ---------------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 23677777777777765444332 345566666666666542
Q ss_pred -CccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 619 -IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 619 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
+|..+..+++|+.|++++|+++...+..|..+++|+.|++++|++.|..|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45566777777777777777774433345677777777777777776554
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.7e-28 Score=248.49 Aligned_cols=246 Identities=22% Similarity=0.250 Sum_probs=129.3
Q ss_pred EEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcC---chhhhhcCCCCcEEE
Q 041867 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI---PEHLAVGCVNLQSLA 365 (776)
Q Consensus 289 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~ 365 (776)
.++.+++.++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+. .+ +...+ ++++|++|+
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEEE
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEEE
Confidence 4555555554 4444332 35555666666555333334555556666666655554 22 23322 355566665
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCC-cccCCCCCCcEEEccccccCCCCCCCCCCCccc
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGSLPSCFHPLSIK 444 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 444 (776)
+++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 85 Ls~n~i~------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------ 140 (306)
T 2z66_A 85 LSFNGVI------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------ 140 (306)
T ss_dssp CCSCSEE------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE------------
T ss_pred CCCCccc------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc------------
Confidence 5444433 233445555566666666665554433 345555555555555555432
Q ss_pred EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFD 523 (776)
Q Consensus 445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 523 (776)
..+..+.++++|+.|++++|.+++ ..+..+..+++|++|++++|++.+..|..+.
T Consensus 141 ------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 141 ------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp ------------------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------------------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence 222334445556666666665554 3445555555666666666655555454444
Q ss_pred CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867 524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603 (776)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 603 (776)
.++ +|++|++++|.+++..+..+..++
T Consensus 197 ~l~-----------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 197 SLS-----------------------------------------------------SLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TCT-----------------------------------------------------TCCEEECTTSCCSBCCSGGGTTCT
T ss_pred CCC-----------------------------------------------------CCCEEECCCCccCccChhhccCcc
Confidence 322 555566666665555555555555
Q ss_pred cCCeeecccccccccCccccCCCC-CCCEEECcCCccCC
Q 041867 604 RIQTLNLSHNDLIGLIPSTFSNLK-HVESLDLSNNKLNG 641 (776)
Q Consensus 604 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 641 (776)
+|+.|++++|++++..+..+..++ +|+.|++++|++++
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666666666666555555555552 56666666665553
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=244.04 Aligned_cols=261 Identities=21% Similarity=0.226 Sum_probs=188.0
Q ss_pred CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ 416 (776)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 416 (776)
++++.+++.++ .+|... .+++++|++++|. +++..+..|..+++|++|++++|.+.+..+..|..
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~-----------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNR-----------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSC-----------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCc-----------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 56777777776 666543 3567777744444 33445556677777777777777777666667777
Q ss_pred CCCCcEEEccccc-cCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867 417 LDLLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL 495 (776)
Q Consensus 417 l~~L~~L~ls~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 495 (776)
+++|++|++++|. +.. ..+..|.++++|++|++++|.+++..+
T Consensus 79 l~~L~~L~l~~n~~l~~------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRS------------------------------------VDPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp CTTCCEEECCSCTTCCC------------------------------------CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccCCCEEeCCCCCCccc------------------------------------cCHHHhcCCcCCCEEECCCCcCCEECH
Confidence 7777777777765 432 334556778888899999888888878
Q ss_pred hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867 496 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575 (776)
Q Consensus 496 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (776)
..+..+++|++|++++|++.+..+..+..++
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------------- 153 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLG------------------------------------------------- 153 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------------------------
T ss_pred hHhhCCcCCCEEECCCCcccccCHhHhccCC-------------------------------------------------
Confidence 8888888888888888888877666665543
Q ss_pred ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655 (776)
Q Consensus 576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 655 (776)
+|++|++++|++++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..++.+..+++|+.
T Consensus 154 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 154 ----NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ----CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 7888888888888777777888888888888888888888888888888888888888888777777888888888
Q ss_pred EecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867 656 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGN 709 (776)
Q Consensus 656 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~ 709 (776)
|++++|++.+..+.. ..+..++......+.+. |..|....+..+..
T Consensus 230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~-------c~~p~~l~g~~l~~ 275 (285)
T 1ozn_A 230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP-------CSLPQRLAGRDLKR 275 (285)
T ss_dssp EECCSSCEECSGGGH-HHHHHHHHCCSEECCCB-------EEESGGGTTCBGGG
T ss_pred EeccCCCccCCCCcH-HHHHHHHhcccccCccc-------cCCchHhCCcChhh
Confidence 888888888655541 22334455555555554 45555555554433
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=252.58 Aligned_cols=250 Identities=27% Similarity=0.297 Sum_probs=199.0
Q ss_pred CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 365 (776)
....++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3456777777776 6666553 47788888888887777777888888888888888877 66666666777787777
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 445 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~ 445 (776)
+++|+ ++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+..+
T Consensus 119 L~~n~-----------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------------- 174 (440)
T 3zyj_A 119 LFDNR-----------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------------- 174 (440)
T ss_dssp CCSSC-----------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------
T ss_pred CCCCc-----------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-------------
Confidence 54444 334455567777777777777777776666677777777777777643221
Q ss_pred EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCC
Q 041867 446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 525 (776)
Q Consensus 446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 525 (776)
...+..|.++++|+.|++++|+++... .+..+++|+.|++++|++.+..|..|..+
T Consensus 175 ----------------------~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 175 ----------------------YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp ----------------------EECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred ----------------------eeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccC
Confidence 133456888999999999999999553 58889999999999999998888888775
Q ss_pred cccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccC
Q 041867 526 TLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRI 605 (776)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 605 (776)
+ +|+.|+|++|++++..+..|.++++|
T Consensus 231 ~-----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 231 M-----------------------------------------------------HLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp T-----------------------------------------------------TCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred c-----------------------------------------------------cCCEEECCCCceeEEChhhhcCCCCC
Confidence 5 89999999999999999999999999
Q ss_pred CeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 606 QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 606 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+.|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999999999999999999999873
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.7e-27 Score=239.16 Aligned_cols=254 Identities=22% Similarity=0.248 Sum_probs=159.3
Q ss_pred ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392 (776)
Q Consensus 313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~ 392 (776)
+.++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|. +++..+..|..
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~-----------l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNV-----------LARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-----------CCEECTTTTTT
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCc-----------cceeCHhhcCC
Confidence 45566666665 334333 356777777777776 5555555566777777744443 33445666677
Q ss_pred CCCCCEEeccCCc-cccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867 393 LTWLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP 471 (776)
Q Consensus 393 l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 471 (776)
+++|++|++++|. +....+..|..+++|++|++++|.+.+ ..+
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------~~~ 122 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------------------------------------LGP 122 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------------------------------------CCT
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------------------------------------ECH
Confidence 7777777777775 665556667777777777777666553 223
Q ss_pred hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..++
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------- 177 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------------------------- 177 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------
T ss_pred hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------
Confidence 3455666777777777777766666666777777777777777655555554433
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 631 (776)
+|++|++++|.+++..|..|..+++|+.|++++|.++++.+..+..+++|+.
T Consensus 178 ----------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 178 ----------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ----------------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 6777777777777666777777777777777777777666666777777777
Q ss_pred EECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcc
Q 041867 632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 671 (776)
Q Consensus 632 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 671 (776)
|++++|++....+.. .....++.+..+.+.+.|..|..+
T Consensus 230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp EECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred EeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 777777766433211 111234444566666666666643
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3e-26 Score=249.99 Aligned_cols=249 Identities=22% Similarity=0.244 Sum_probs=189.0
Q ss_pred cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL 366 (776)
Q Consensus 287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 366 (776)
...++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 456677666666 5565443 46777777777777666677777777777777777776 555555556677777774
Q ss_pred cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEE
Q 041867 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 446 (776)
Q Consensus 367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 446 (776)
++|+ ++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|...
T Consensus 131 ~~n~-----------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l--------------- 184 (452)
T 3zyi_A 131 FDNW-----------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL--------------- 184 (452)
T ss_dssp CSSC-----------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------------
T ss_pred CCCc-----------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------------
Confidence 4443 33344555666677777777777766666666666666666666664321
Q ss_pred EcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCc
Q 041867 447 HLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 526 (776)
Q Consensus 447 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 526 (776)
....+..|.++++|+.|++++|++++. ..+..+++|+.|++++|++.+..|..|..++
T Consensus 185 --------------------~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 185 --------------------EYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp --------------------CEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred --------------------cccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCcc
Confidence 113345688899999999999999965 3588899999999999999988888777654
Q ss_pred ccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCC
Q 041867 527 LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQ 606 (776)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 606 (776)
+|+.|++++|++++..+..|..+++|+
T Consensus 243 -----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 243 -----------------------------------------------------SLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp -----------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -----------------------------------------------------CCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 899999999999999999999999999
Q ss_pred eeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 607 TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 607 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
.|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 99999999999999999999999999999999874
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.7e-27 Score=247.10 Aligned_cols=259 Identities=20% Similarity=0.219 Sum_probs=157.1
Q ss_pred ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~ 390 (776)
+|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|++ ++..+..|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-----------~~~~~~~~ 120 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-----------SNLSSSWF 120 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-----------SSCCHHHH
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-----------CcCCHhHh
Confidence 4444444444444433334444555555555555444 33333333444555555333322 22222334
Q ss_pred cCCCCCCEEeccCCccccCCC-cccCCCCCCcEEEcccc-ccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCcccc
Q 041867 391 GNLTWLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDN-NISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLN 467 (776)
Q Consensus 391 ~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ls~n-~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~ 467 (776)
+++++|++|++++|++....+ ..|..+++|++|++++| .+....+..+. +++|++|++++|++ +
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-------------~ 187 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-------------Q 187 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-------------C
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-------------C
Confidence 445555555555555543332 24455555555555555 23333333333 44555554433332 2
Q ss_pred ccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccccc
Q 041867 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI 547 (776)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (776)
+..|..+..+++|++|++++|.++......+..+++|+.|++++|++.+..+..+....
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~--------------------- 246 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE--------------------- 246 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc---------------------
Confidence 34566778889999999999998866666666789999999999999876554433211
Q ss_pred CCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCC----CChhhhccCccCCeeecccccccccCcccc
Q 041867 548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG----PIPPQIGNLTRIQTLNLSHNDLIGLIPSTF 623 (776)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 623 (776)
..+.++.++++++.+.+ .+|..+..+++|+.|++++|+++.+++..|
T Consensus 247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 12357777888877764 467889999999999999999997776668
Q ss_pred CCCCCCCEEECcCCccCCcCC
Q 041867 624 SNLKHVESLDLSNNKLNGKIP 644 (776)
Q Consensus 624 ~~l~~L~~L~Ls~N~l~~~~~ 644 (776)
..+++|++|++++|++.+..|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 999999999999999986544
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.7e-29 Score=285.20 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=150.0
Q ss_pred CCCCCcEEeCCCCccccCcchhHHHHhcCCC-ccEEEccCCC-CCCCCCCcCCcCCCCCCCCCEEEccCCccccc----c
Q 041867 53 HFKSLEHLGMMSTRIALNTNFLQVISESMPS-LKYLSLSYST-LGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----L 126 (776)
Q Consensus 53 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~-L~~L~L~~n~-i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~ 126 (776)
.+++|++|++++| .+.+..+..+...+++ |++|++++|. +.. .........+++|++|+|++|.+++. +
T Consensus 110 ~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 4566666666666 4444444444422333 6666666654 111 00001122455666666666665443 2
Q ss_pred CccccCCCCCCEEeCCCCcCc----ccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccc
Q 041867 127 PWCMTNLTSLRILDVSSNQLT----GSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQ 202 (776)
Q Consensus 127 ~~~~~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 202 (776)
+..+..+++|++|++++|.++ +.++. .+.++++|++|++++|.+.+ ++ ..+..+++|++|+++........
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~-- 259 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGM-- 259 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTC--
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccch--
Confidence 223445566666666666654 12222 33455666666666665553 22 33555666666666542111000
Q ss_pred cccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCC-CCC
Q 041867 203 SHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFR-LPI 281 (776)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~ 281 (776)
...+..+..+++|+.++++++.. ..+|.. +..+++|++|++++|.+++... ..+
T Consensus 260 -----------------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 260 -----------------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp -----------------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred -----------------------HHHHHHhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 01112223333444444443211 122222 1344444444444444332111 112
Q ss_pred CCCCCcCEEEceeccCcccCChhhhccCcccceeeccc-----------ccCccCC-CccCCCCCCCCEEEccCCcCCCc
Q 041867 282 HSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM-----------NALDGSI-PSSLGNMKFLQILDLSNNHLTGE 349 (776)
Q Consensus 282 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 349 (776)
..+++|+.|+++ +.+.......+...+++|++|++++ +.+++.. +.....+++|++|+++.|.+++.
T Consensus 315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 344555555554 2222121222222345555555552 3333211 11123356666666666666544
Q ss_pred CchhhhhcCCCCcEEEccCccccceEecCCCcCCCC-----CCccccCCCCCCEEeccCCc--cccCCCccc-CCCCCCc
Q 041867 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK-----IPRWLGNLTWLQYIIMPNNH--LEGPIPVEF-CQLDLLQ 421 (776)
Q Consensus 350 ~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~-~~l~~L~ 421 (776)
.+..+...+++|+.|+++++. ..|.+++. ++..+.++++|++|++++|. +++.....+ ..+++|+
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~-------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLD-------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECS-------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred HHHHHHhhCCCCcEEEEeecC-------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 444444446666666654211 12223322 22224456666676665432 333222222 2356677
Q ss_pred EEEccccccC
Q 041867 422 ILDISDNNIS 431 (776)
Q Consensus 422 ~L~ls~n~l~ 431 (776)
+|++++|.++
T Consensus 467 ~L~L~~n~l~ 476 (592)
T 3ogk_B 467 WMLLGYVGES 476 (592)
T ss_dssp EEEECSCCSS
T ss_pred EeeccCCCCC
Confidence 7777666654
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-27 Score=248.11 Aligned_cols=260 Identities=22% Similarity=0.197 Sum_probs=145.2
Q ss_pred cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391 (776)
Q Consensus 312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~ 391 (776)
++..+++.+.+.......+..+++|++|++++|.++ .++...+..+++|++|++++|.+. +..+ +.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~--~~ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-----------ETLD--LE 77 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCE-----------EEEE--ET
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCC-----------cchh--hh
Confidence 334444455444333333444556666666666665 444444445666666664444433 1111 55
Q ss_pred CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP 471 (776)
Q Consensus 392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 471 (776)
.+++|++|++++|.+++.. ..++|++|++++|.+.+..+.
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----------------------------------- 117 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----------------------------------- 117 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC-----------------------------------
T ss_pred hcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc-----------------------------------
Confidence 5555666666666555322 224555555555555432221
Q ss_pred hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
.+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..
T Consensus 118 ----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------- 166 (317)
T 3o53_A 118 ----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------------- 166 (317)
T ss_dssp ----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------
T ss_pred ----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------
Confidence 2345666666666666555555666666666666666665443332210
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 631 (776)
.+++|++|++++|.+++. + ....+++|++|+|++|+++++++. +..+++|+.
T Consensus 167 -------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~ 218 (317)
T 3o53_A 167 -------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW 218 (317)
T ss_dssp -------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred -------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccE
Confidence 023566666666666543 2 222366777777777777755443 666777777
Q ss_pred EECcCCccCCcCCccccCCCCCCEEecccccCc-ccCCCccccccccCcccccCC
Q 041867 632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGN 685 (776)
Q Consensus 632 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~l~~~~~~~n 685 (776)
|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.++
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777776 45556667777777777777776 455566666666666666644
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.6e-26 Score=235.28 Aligned_cols=235 Identities=20% Similarity=0.291 Sum_probs=186.9
Q ss_pred CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV 412 (776)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 412 (776)
.++++.|++++|.+. .+|..++. +++|++|++++|.+ + .+|..++.+++|++|++++|.+. .+|.
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l-----------~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGL-----------M-ELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCC-----------C-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCc-----------c-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence 467899999999998 88887764 88999999655554 3 57788888999999999999888 6688
Q ss_pred ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 492 (776)
Q Consensus 413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 492 (776)
.+..+++|++|++++|++.+..|..+. .. ..+..|.++++|+.|++++|.++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~----------------------~~~~~~~~l~~L~~L~L~~n~l~- 196 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLA-----ST----------------------DASGEHQGLVNLQSLRLEWTGIR- 196 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSE-----EE----------------------C-CCCEEESTTCCEEEEEEECCC-
T ss_pred HHhcCcCCCEEECCCCCCccccChhHh-----hc----------------------cchhhhccCCCCCEEECcCCCcC-
Confidence 888899999999998877765554321 11 22334677899999999999988
Q ss_pred cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEE
Q 041867 493 EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572 (776)
Q Consensus 493 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (776)
..|..+..+++|++|++++|++.+. |..+..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~------------------------------------------------ 227 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSAL-GPAIHH------------------------------------------------ 227 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGG------------------------------------------------
T ss_pred cchHhhcCCCCCCEEEccCCCCCcC-chhhcc------------------------------------------------
Confidence 5667788889999999999988853 333443
Q ss_pred eccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCC
Q 041867 573 YQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 652 (776)
Q Consensus 573 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 652 (776)
+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|+.+..+++
T Consensus 228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 337888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCEEecccccCc
Q 041867 653 LEVFSVAYNNLS 664 (776)
Q Consensus 653 L~~L~l~~N~l~ 664 (776)
|+.+++..|.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 888888877665
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=4e-28 Score=275.61 Aligned_cols=360 Identities=15% Similarity=0.111 Sum_probs=154.0
Q ss_pred CCCCCCEEeCCCCcCccccCCCcCCC-CCC-CcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcC
Q 041867 28 IFPSLKNLSISYCEVNGVVHGQGFPH-FKS-LEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG 105 (776)
Q Consensus 28 ~~~~L~~L~Ls~n~~~~~~~~~~~~~-l~~-L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 105 (776)
.+++|++|+|++|.+.+..+. .+.. +++ |++|++++|. .+.......+..++++|++|+|++|.+++.+.......
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 455566666655554432222 2222 223 5555555552 11111122222255556666666555543111101112
Q ss_pred CCCCCCCCEEEccCCcccc----ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccc--cccCccc
Q 041867 106 LCSPVHLQELYIGSNDLRG----SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLEP 179 (776)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~ 179 (776)
+..+++|++|++++|.+++ .++..+.++++|++|++++|.+. .++. .+..+++|++|+++..... .......
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHH
Confidence 2344555666665555541 22333445555666666655554 3443 4555555666555532111 0001122
Q ss_pred ccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhc
Q 041867 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLEN 259 (776)
Q Consensus 180 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (776)
+..+++|+.|+++++. ...+|..+..+++|++|++++|.+.+.....++..
T Consensus 266 l~~~~~L~~L~l~~~~-----------------------------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG-----------------------------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp CCCCTTCCEEEETTCC-----------------------------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred hhccccccccCccccc-----------------------------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 3334444444443211 11233444455555666665555443333333355
Q ss_pred CCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEcee-----------ccCcccCChhhhccCcccceeecccccCccCCC
Q 041867 260 NTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISN-----------NNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIP 327 (776)
Q Consensus 260 l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~-----------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 327 (776)
+++|+.|++++ .+.. ..+.....+++|++|++++ +.+++.....+...+++|+.|++..+.+++..+
T Consensus 317 ~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 55566655552 2221 1111123345555665552 333322122222234555555555555554333
Q ss_pred ccCCC-CCCCCEEEcc----CCcCCCc----CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc-cCCCCCC
Q 041867 328 SSLGN-MKFLQILDLS----NNHLTGE----IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-GNLTWLQ 397 (776)
Q Consensus 328 ~~~~~-l~~L~~L~l~----~n~l~~~----~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~ 397 (776)
..+.. +++|++|+++ .|.+++. .-...+.++++|++|++++|.- .+++.....+ ..+++|+
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~---------~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG---------GLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG---------GCCHHHHHHHHHSCTTCC
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC---------CccHHHHHHHHHhCccce
Confidence 33332 5555555554 3444421 0111233455555555443210 0111111112 2245555
Q ss_pred EEeccCCccccC-CCcccCCCCCCcEEEcccccc
Q 041867 398 YIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNI 430 (776)
Q Consensus 398 ~L~l~~n~i~~~-~~~~~~~l~~L~~L~ls~n~l 430 (776)
+|++++|.+++. .+..+.++++|++|++++|.+
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 666655555432 222334455555555555543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=243.03 Aligned_cols=189 Identities=25% Similarity=0.214 Sum_probs=128.4
Q ss_pred CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
+++|+.|++++|.++.+ |. .+++|++|++++|.+.+... .+.+|+.|++++|.+. .+|
T Consensus 120 l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~--------------~l~- 177 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT--------------SLP- 177 (622)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--------------CCC-
T ss_pred CCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC--------------CCc-
Confidence 34455555555555432 22 12555555555555553321 1345555555555443 122
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG 552 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (776)
..+++|+.|++++|.+++... .+++|+.|++++|.++...+ .
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~-~------------------------------- 219 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA-L------------------------------- 219 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC-C-------------------------------
T ss_pred --ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC-C-------------------------------
Confidence 335778888888888875332 24788889999888874321 1
Q ss_pred CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867 553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 632 (776)
+++|+.|++++|.+++ +| ..+++|+.|+|++|.|+.+++ .+++|+.|
T Consensus 220 -------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L 266 (622)
T 3g06_A 220 -------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSL 266 (622)
T ss_dssp -------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred -------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEE
Confidence 2378899999999985 44 556889999999999986544 56889999
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccccc
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 675 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 675 (776)
+|++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999998 6788899999999999999999988777665554
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.6e-25 Score=228.27 Aligned_cols=227 Identities=21% Similarity=0.263 Sum_probs=193.8
Q ss_pred CcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR 388 (776)
Q Consensus 309 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~ 388 (776)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|.
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~------------~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR------------ALPA 144 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC------------CCCG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc------------cCcH
Confidence 468999999999998 77888999999999999999999 8987664 6999999996666553 5788
Q ss_pred cccCCCCCCEEeccCCccccCCCcccCC---------CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCccccc
Q 041867 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQ---------LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 459 (776)
Q Consensus 389 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 459 (776)
.+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------------- 196 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---------------------------- 196 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC----------------------------
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC----------------------------
Confidence 8999999999999999888888877654 667777777766655
Q ss_pred ccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcch
Q 041867 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDE 539 (776)
Q Consensus 460 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (776)
.+|..+..+++|+.|++++|.+++. +..+..+++|++|++++|++.+..|..+..++
T Consensus 197 ---------~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~------------- 253 (328)
T 4fcg_A 197 ---------SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA------------- 253 (328)
T ss_dssp ---------CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-------------
T ss_pred ---------cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCC-------------
Confidence 4456678888999999999999864 44688899999999999999888888777644
Q ss_pred hhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccC
Q 041867 540 QFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLI 619 (776)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 619 (776)
+|++|++++|.+.+.+|..+.++++|+.|+|++|++.+.+
T Consensus 254 ----------------------------------------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 254 ----------------------------------------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp ----------------------------------------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred ----------------------------------------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 8999999999999899999999999999999999999999
Q ss_pred ccccCCCCCCCEEECcCCccCC
Q 041867 620 PSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 620 ~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
|..+..+++|+.+++..+.+..
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSCC
T ss_pred cHHHhhccCceEEeCCHHHHHH
Confidence 9999999999999999887763
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-26 Score=250.11 Aligned_cols=231 Identities=22% Similarity=0.212 Sum_probs=148.9
Q ss_pred CCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCc
Q 041867 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYN 464 (776)
Q Consensus 385 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n 464 (776)
..|..|..+++|++|++++|.+.+..+ |..+++|++|++++|.+.+..+ .++|++|++++|.+.+
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~--------- 113 (487)
T 3oja_A 49 ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR--------- 113 (487)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCC---------
T ss_pred CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCC---------
Confidence 334444444555555555554443332 4455555555555555443222 1445555444444332
Q ss_pred cccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867 465 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544 (776)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (776)
..+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..
T Consensus 114 ----~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------------- 166 (487)
T 3oja_A 114 ----VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------------- 166 (487)
T ss_dssp ----EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred ----CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence 111 12466777777777777777777777777777777777777655544431
Q ss_pred cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624 (776)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 624 (776)
.+++|++|+|++|.+++.. .+..+++|+.|+|++|.+++++|. +.
T Consensus 167 --------------------------------~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~ 211 (487)
T 3oja_A 167 --------------------------------SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQ 211 (487)
T ss_dssp --------------------------------GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred --------------------------------hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-Hc
Confidence 0236777888888777552 233578888888888888876554 77
Q ss_pred CCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc-ccCCCccccccccCccccc-------CCCCCCCCCC
Q 041867 625 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYE-------GNTFLCGLPL 693 (776)
Q Consensus 625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~l~~~~~~-------~n~~~c~~~~ 693 (776)
.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.+..++.. ++++.|.|+.
T Consensus 212 ~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 88888888888888884 5667888888999999999888 4566666777777777665 8899888753
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.8e-25 Score=222.18 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=40.9
Q ss_pred ccceEEccCCcCCCCChhhhccCccCC----eeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQ----TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 655 (776)
+|++|++++|++++..+..+..+++|+ .|++++|.++++.+..+.. .+|+.|++++|++++..+..|..+++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence 455555555555544444444444444 4455555554444333332 24555555555554444444444455555
Q ss_pred EecccccCcccC
Q 041867 656 FSVAYNNLSGEI 667 (776)
Q Consensus 656 L~l~~N~l~~~~ 667 (776)
|++++|+++|..
T Consensus 229 L~l~~N~~~c~c 240 (276)
T 2z62_A 229 IWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCBCCCT
T ss_pred EEccCCcccccC
Confidence 555555554433
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.3e-24 Score=217.65 Aligned_cols=206 Identities=23% Similarity=0.251 Sum_probs=124.2
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
..+.++++++.++. +|..+. ++++.|++++|.+....+ ..|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~------------------------------------~~~ 57 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPS------------------------------------KAF 57 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCT------------------------------------TSS
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCH------------------------------------HHh
Confidence 45667777777663 343332 456666666666654433 345
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
.++++|++|++++|.++...+..|..+++|++|++++|++.+..+..|..++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------- 109 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV---------------------------- 109 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS----------------------------
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc----------------------------
Confidence 5556666666666666655555556666666666666666555544444432
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+|++|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|+.|++
T Consensus 110 -------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 110 -------------------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp -------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 5666666666666555556666666666666666666655555666666666666
Q ss_pred cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++|++++..+..|..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6666665555556666666666666666665555455556666666666666666664
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-26 Score=239.24 Aligned_cols=268 Identities=19% Similarity=0.197 Sum_probs=213.8
Q ss_pred CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 365 (776)
+++..+++.+.+. ..+..+...+++|+.|++++|.+.+..|..|..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEE
Confidence 3555667777665 33444555578999999999999988778999999999999999999844 43 56799999999
Q ss_pred ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 445 (776)
Q Consensus 366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~ 445 (776)
+++|++++ +...++|++|++++|.+.+..+. .+++|++|++++|.+.+.
T Consensus 87 Ls~n~l~~----------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~------------ 135 (317)
T 3o53_A 87 LNNNYVQE----------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML------------ 135 (317)
T ss_dssp CCSSEEEE----------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG------------
T ss_pred CcCCcccc----------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc------------
Confidence 88887652 22348999999999999876544 357899999999887742
Q ss_pred EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhc-CCCCCCEEeCCCCcccCCCCCCCcC
Q 041867 446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDN 524 (776)
Q Consensus 446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 524 (776)
.+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++++..+..+
T Consensus 136 ------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 189 (317)
T 3o53_A 136 ------------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-- 189 (317)
T ss_dssp ------------------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC--
T ss_pred ------------------------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc--
Confidence 334566788899999999999887777664 68999999999999875522211
Q ss_pred CcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCcc
Q 041867 525 TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR 604 (776)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 604 (776)
+++|++|++++|.+++..+ .+..+++
T Consensus 190 -----------------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 190 -----------------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (317)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred -----------------------------------------------------cccCCEEECCCCcCCcchh-hhcccCc
Confidence 3489999999999996544 5999999
Q ss_pred CCeeecccccccccCccccCCCCCCCEEECcCCccC-CcCCccccCCCCCCEEecccc-cCcccCCC
Q 041867 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGEIPE 669 (776)
Q Consensus 605 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N-~l~~~~p~ 669 (776)
|+.|+|++|+++++ |..+..+++|+.|++++|++. +.+|..+..+++|+.+++++| .+++..|.
T Consensus 216 L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999964 677899999999999999998 778889999999999999955 56654443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.5e-26 Score=235.39 Aligned_cols=184 Identities=24% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCCcCEEEceeccCcccCChhhhccCcccceeecccccCc-cCCCccCC-------CCCCCCEEEccCCcCCCcCchhhh
Q 041867 284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD-GSIPSSLG-------NMKFLQILDLSNNHLTGEIPEHLA 355 (776)
Q Consensus 284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~ 355 (776)
.++|+.+++++|.+ .+|..+.. .|+.|++++|.+. ..+|..+. .+++|++|++++|.+++.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34555666666666 45555443 2566666666653 22333222 455555666665555545554432
Q ss_pred -hcCCCCcEEEccCccccceEecCCCcCCCCCCccccCC-----CCCCEEeccCCccccCCCcccCCCCCCcEEEccccc
Q 041867 356 -VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNL-----TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429 (776)
Q Consensus 356 -~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 429 (776)
..+++|++|++++|++ ++. |..+..+ ++|++|++++|++.+..+..|..+++|++|++++|+
T Consensus 117 ~~~l~~L~~L~Ls~N~l-----------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSW-----------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp SCCSCCCSEEEEESCBC-----------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred HhcCCCccEEEccCCCC-----------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 3455555555333332 222 3434433 555555555555555554555555555555555554
Q ss_pred cCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh--hccCccCCEEEcccccCCc---cchhhhcCCCCC
Q 041867 430 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW--VDGLSQLSHLILGHNNLEG---EVLVQLCELNQL 504 (776)
Q Consensus 430 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L 504 (776)
+.+.. ..+.. +..+++|++|++++|++++ .....+..+++|
T Consensus 185 l~~~~----------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 185 ELGER----------------------------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp TCHHH----------------------------------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred cCcch----------------------------------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 33210 01111 2556666666666666662 222334456666
Q ss_pred CEEeCCCCcccCCC
Q 041867 505 QLLDLSNNNLHGPI 518 (776)
Q Consensus 505 ~~L~Ls~n~l~~~~ 518 (776)
++|++++|++.+..
T Consensus 231 ~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 231 QGLDLSHNSLRDAA 244 (312)
T ss_dssp SEEECTTSCCCSSC
T ss_pred CEEECCCCcCCccc
Confidence 66666666665544
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.5e-24 Score=217.89 Aligned_cols=168 Identities=27% Similarity=0.290 Sum_probs=130.9
Q ss_pred cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
..+..|.++++|+.|++++|.+++..+. ..+++|++|++++|++. .+|..+..
T Consensus 46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~------------------------ 98 (290)
T 1p9a_G 46 FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT------------------------ 98 (290)
T ss_dssp EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT------------------------
T ss_pred cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc------------------------
Confidence 4455677788888888888888765443 67788888888888887 34444443
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+++|++|++++|++++..+..|.++++|++|+|++|+++++++..|..+++
T Consensus 99 -----------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 99 -----------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred -----------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 337888888888888777788888888888888888888888778888888
Q ss_pred CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 693 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 693 (776)
|+.|+|++|+++...+..|..+++|+.|++++|+++ .+|..+.....++.+++++|||.|+|..
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 888888888888766667788888888888888888 5666666777888888888888888854
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.9e-28 Score=273.34 Aligned_cols=440 Identities=13% Similarity=0.061 Sum_probs=213.2
Q ss_pred hhccCCCCCCCEEeCCCCcCcccc---CC-----------CcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEE
Q 041867 23 QSIASIFPSLKNLSISYCEVNGVV---HG-----------QGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLS 88 (776)
Q Consensus 23 ~~~~~~~~~L~~L~Ls~n~~~~~~---~~-----------~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~ 88 (776)
...+.++++|++|++++|...... |. .....+++|++|++++| .+.+..+..+...+++|++|+
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM--VVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc--EEcHHHHHHHHHhCCCCcEEe
Confidence 333556666677766665421111 10 01124566777777766 445555555544566777777
Q ss_pred ccCC-CCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcccc----CCCCCCEEeCCCCcCcccCCcc----cccCCC
Q 041867 89 LSYS-TLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMT----NLTSLRILDVSSNQLTGSISSS----PLIHLT 159 (776)
Q Consensus 89 L~~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~i~~~----~~~~l~ 159 (776)
+++| .+++ ......+.++++|++|++++|.+++..+..+. .+++|++|++++|. . .+... .+..++
T Consensus 137 L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 137 LSSCEGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCP 211 (594)
T ss_dssp EESCEEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCT
T ss_pred CCCcCCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCC
Confidence 7666 3322 11111223566677777777766544333332 55577777777665 1 22111 123356
Q ss_pred CCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867 160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239 (776)
Q Consensus 160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 239 (776)
+|++|++++|...+.+ ...+..+++|++|+++.+.... ..+.. ..++..+..+++|+
T Consensus 212 ~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~---------------------~~~~~-~~l~~~l~~~~~L~ 268 (594)
T 2p1m_B 212 NLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEV---------------------RPDVY-SGLSVALSGCKELR 268 (594)
T ss_dssp TCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCC---------------------CHHHH-HHHHHHHHTCTTCC
T ss_pred CCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCcc---------------------chhhH-HHHHHHHhcCCCcc
Confidence 7777777766211111 1234556667777655442100 00000 01122334444444
Q ss_pred EE-EcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCC-CCCCCCCcCEEEceeccCcccCChhhhccCcccceeec
Q 041867 240 TV-ELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRL-PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNN 317 (776)
Q Consensus 240 ~L-~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l 317 (776)
.+ .+.+... +.++..+ ..+++|+.|++++|.+++.... .+..+++|+.|++++| +.......+...+++|+.|++
T Consensus 269 ~Ls~~~~~~~-~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 269 CLSGFWDAVP-AYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp EEECCBTCCG-GGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred cccCCcccch-hhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 44 2222111 1222221 3445555555555554322111 1234555555555555 221111122223455666655
Q ss_pred cc---------ccCccCCCccC-CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCC--
Q 041867 318 SM---------NALDGSIPSSL-GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK-- 385 (776)
Q Consensus 318 ~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~-- 385 (776)
.. +.+++.....+ ..+++|+.|+++.|.+++.....+...+++|+.|+++.+... ..+.+++.
T Consensus 346 ~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-----~~~~l~~~~~ 420 (594)
T 2p1m_B 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-----APDYLTLEPL 420 (594)
T ss_dssp ECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-----CCCTTTCCCT
T ss_pred ecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-----CcccccCCch
Confidence 22 23322111112 235677777777777764444444445777777776621100 00122211
Q ss_pred ---CCccccCCCCCCEEeccCCccccCCCcccCC-CCCCcEEEccccccCCCCCCCC--CCCcccEEEcCCcccCccccc
Q 041867 386 ---IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ-LDLLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKR 459 (776)
Q Consensus 386 ---~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~ 459 (776)
++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ .+++|++|++++|.+.+.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~--- 496 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK--- 496 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH---
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH---
Confidence 112245567777777766 444433333433 6777788887777653322222 156677776666654211
Q ss_pred ccCCccccccCChhhccCccCCEEEcccccCCccchhhh-cCCCCCCEEeCCCCc
Q 041867 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL-CELNQLQLLDLSNNN 513 (776)
Q Consensus 460 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~ 513 (776)
........+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 497 ---------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 497 ---------ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp ---------HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred ---------HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 111233457888888888888865444444 456777766666553
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.6e-26 Score=235.32 Aligned_cols=246 Identities=23% Similarity=0.260 Sum_probs=124.5
Q ss_pred CCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc-------CCCCCCEEeccCC
Q 041867 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG-------NLTWLQYIIMPNN 404 (776)
Q Consensus 332 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n 404 (776)
..++|+.|++++|.+ .+|..+... |+.|++++|.+.. ...+..+. ++++|++|++++|
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----------ARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----------EECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----------CCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 344555556666655 455544432 5555544444321 12333332 4666666666666
Q ss_pred ccccCCCccc--CCCCCCcEEEccccccCCCCCCCCC-C-----CcccEEEcCCcccCcccccccCCccccccCChhhcc
Q 041867 405 HLEGPIPVEF--CQLDLLQILDISDNNISGSLPSCFH-P-----LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDG 476 (776)
Q Consensus 405 ~i~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~-~-----~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~ 476 (776)
.+.+..|..+ ..+++|++|++++|.+.+. +..+. . ++|++|++++|++ ++..+..|.+
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-------------~~~~~~~~~~ 171 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-------------LNFSCEQVRV 171 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-------------CCCCTTTCCC
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-------------ccchHHHhcc
Confidence 6666666554 6666677777766666644 32221 1 3344443333222 1233345555
Q ss_pred CccCCEEEcccccCCcc--chhhh--cCCCCCCEEeCCCCcccCCCC---CCCcCCcccccccCCCCcchhhhcccccCC
Q 041867 477 LSQLSHLILGHNNLEGE--VLVQL--CELNQLQLLDLSNNNLHGPIP---PCFDNTTLYESYSNSSSLDEQFEIFFSIES 549 (776)
Q Consensus 477 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (776)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++.+... ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~------------------------- 226 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA------------------------- 226 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-------------------------
Confidence 66666666666665543 12222 555666666666665542110 00000
Q ss_pred CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh-hhhccCccCCeeecccccccccCccccCCCCC
Q 041867 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP-PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+++|++|++++|.+++..| ..+..+++|++|+|++|.++. +|..+. ++
T Consensus 227 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~ 275 (312)
T 1wwl_A 227 ----------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AK 275 (312)
T ss_dssp ----------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SE
T ss_pred ----------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc--CC
Confidence 2355566666666555443 334445556666666666552 233333 55
Q ss_pred CCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 664 (776)
|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 56666666666543 33 555555666666666555
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.4e-23 Score=230.14 Aligned_cols=258 Identities=25% Similarity=0.240 Sum_probs=207.1
Q ss_pred ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~ 390 (776)
.++.+++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~------------~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT------------SLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS------------CCCC--
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC------------cCCC--
Confidence 5788888888887 5566554 78999999999988 7776 4788999996666654 2443
Q ss_pred cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
.+++|++|++++|.+++..+ .+++|+.|++++|++...... +++|++|++++|++.+ +
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~--------------l 156 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS--------------L 156 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC--------------C
T ss_pred -CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC--------------c
Confidence 67899999999999986443 678999999999999875442 4889999888887652 2
Q ss_pred ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550 (776)
Q Consensus 471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (776)
|. .+++|+.|++++|.+++.. ..+++|+.|++++|++++..+ .
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~-~----------------------------- 199 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT-L----------------------------- 199 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-C-----------------------------
T ss_pred CC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC-c-----------------------------
Confidence 22 3478999999999999754 457899999999999985332 1
Q ss_pred CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 630 (776)
+++|+.|++++|.++. +|. .+++|+.|+|++|.+++++ ..+++|+
T Consensus 200 ---------------------------~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~ 244 (622)
T 3g06_A 200 ---------------------------PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----VLPSELK 244 (622)
T ss_dssp ---------------------------CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----CCCTTCC
T ss_pred ---------------------------cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----CCCCcCc
Confidence 2379999999999984 443 3589999999999999754 4568999
Q ss_pred EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCC
Q 041867 631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c 689 (776)
.|++++|+|+ .+|. .+++|+.|++++|+|+ .+|..+..+++++.+++++|++..
T Consensus 245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 9999999998 4555 5689999999999999 678889999999999999998764
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.2e-24 Score=216.75 Aligned_cols=210 Identities=24% Similarity=0.250 Sum_probs=170.0
Q ss_pred CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
++|++|++++|.+++..+..|..+++|++|++++|.+.+ ..+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------~~~~~ 71 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------------------IEDGA 71 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------------------ECTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------------------cCHHH
Confidence 467777788887777766677788888888888877653 22334
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (776)
|.++++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+..++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------- 124 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--------------------------- 124 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT---------------------------
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC---------------------------
Confidence 56677888888888888877777788888888888888888876665565533
Q ss_pred ccccccceeeeeecceEEEeccccccccceEEccCCcCCCC-ChhhhccCccCCeeecccccccccCccccCCCCCCC--
Q 041867 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP-IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE-- 630 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 630 (776)
+|++|++++|.+.+. +|..+..+++|++|++++|+++++.+..|..+++|+
T Consensus 125 --------------------------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 125 --------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp --------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred --------------------------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 799999999999864 588999999999999999999998888887777777
Q ss_pred --EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867 631 --SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 693 (776)
Q Consensus 631 --~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 693 (776)
.|++++|++++..+..+.. .+|+.|++++|++++..+..+..+++++.+++++||+.|+|+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 8999999999776665554 5899999999999987777778899999999999999999973
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.8e-25 Score=242.31 Aligned_cols=245 Identities=22% Similarity=0.220 Sum_probs=177.7
Q ss_pred CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV 412 (776)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 412 (776)
+++|++|++++|.+. .++...+..+++|+.|++++|.+. +..| +..+++|++|++++|.+++..+
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-----------ETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCE-----------EEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCC-----------CCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 345666666666666 344444445666666665444433 2222 5566666666666666664322
Q ss_pred ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 492 (776)
Q Consensus 413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 492 (776)
.++|+.|++++|.+.+..+.. +++|++|++++|.+. +..|..+..+++|+.|+|++|.+++
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKIT-------------MLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCC-------------SGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCC-------------CCCchhhcCCCCCCEEECCCCCCCC
Confidence 266777777777766554432 356777755555443 4556678889999999999999999
Q ss_pred cchhhhc-CCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEE
Q 041867 493 EVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY 571 (776)
Q Consensus 493 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
..+..+. .+++|+.|+|++|.+++..+..+
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~------------------------------------------------- 189 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV------------------------------------------------- 189 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCC-------------------------------------------------
T ss_pred cChHHHhhhCCcccEEecCCCcccccccccc-------------------------------------------------
Confidence 8888886 79999999999999986633221
Q ss_pred EeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC-CcCCccccCC
Q 041867 572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVEL 650 (776)
Q Consensus 572 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l 650 (776)
+++|+.|+|++|.+++..| .+..+++|+.|+|++|.++++ |..+..+++|+.|++++|++. +.+|..+..+
T Consensus 190 ------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 190 ------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp ------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 3489999999999997655 499999999999999999974 667899999999999999998 6778888889
Q ss_pred CCCCEEecc-------cccCcccCC
Q 041867 651 KTLEVFSVA-------YNNLSGEIP 668 (776)
Q Consensus 651 ~~L~~L~l~-------~N~l~~~~p 668 (776)
+.|+.++++ .|+..+..+
T Consensus 262 ~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 262 QRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCcEEeccccccccCCCcccccCC
Confidence 999999987 555554443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.2e-23 Score=208.32 Aligned_cols=187 Identities=24% Similarity=0.278 Sum_probs=142.2
Q ss_pred CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
+++++|++++|.+.+..+..|..+++|++|++++|.+.... +..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~------------------------------------~~~ 80 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP------------------------------------AGI 80 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC------------------------------------TTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC------------------------------------hhh
Confidence 45666666666666555556667777777777766665322 223
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (776)
|.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------- 133 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--------------------------- 133 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------
Confidence 45566666666666666666666667777788888888877776666665543
Q ss_pred ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD 633 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 633 (776)
+|++|++++|.+++..+..|..+++|+.|+|++|.++++.+..|..+++|+.|+
T Consensus 134 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 134 --------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp --------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred --------------------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 788888888888877777788999999999999999988888899999999999
Q ss_pred CcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
+++|++++..+..|..+++|+.|++++|++.+..+.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999987777888999999999999999876653
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=8.5e-27 Score=264.86 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=32.9
Q ss_pred CCCCCCEEEccCCccccccCcccc-CCCCCCEEeCCCC-cCccc-CCcccccCCCCCCEEeccCCccc
Q 041867 108 SPVHLQELYIGSNDLRGSLPWCMT-NLTSLRILDVSSN-QLTGS-ISSSPLIHLTSIEKLYLSNNHFQ 172 (776)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-i~~~~~~~l~~L~~L~L~~n~l~ 172 (776)
.+++|++|+|++|.+++..+..+. .+++|++|++++| .+++. ++. .+.++++|++|++++|.++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccC
Confidence 345566666666655544444443 4566666666665 33311 222 2334556666666665544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.4e-22 Score=206.13 Aligned_cols=181 Identities=21% Similarity=0.190 Sum_probs=133.9
Q ss_pred CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW 473 (776)
Q Consensus 394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 473 (776)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------------------- 72 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------------------------------------- 72 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------------------------------------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------------------------------------
Confidence 345555555555555555556666666666666665542111
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (776)
...+++|+.|++++|.++ ..|..+..+++|++|++++|++++..+..|..++
T Consensus 73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~--------------------------- 124 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--------------------------- 124 (290)
T ss_dssp CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT---------------------------
T ss_pred CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC---------------------------
Confidence 134566666777777666 3345566777888888888888777666676644
Q ss_pred ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD 633 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 633 (776)
+|++|+|++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+
T Consensus 125 --------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 125 --------------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp --------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred --------------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 788888888888877778888899999999999999988888889999999999
Q ss_pred CcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867 634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 667 (776)
Q Consensus 634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 667 (776)
|++|+++ .+|..+..+++|+.+++++|++.|..
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9999998 67777788889999999999998743
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.9e-22 Score=203.69 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=133.4
Q ss_pred ccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccccc
Q 041867 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS 469 (776)
Q Consensus 390 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~ 469 (776)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+ .
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~------------------------------------~ 100 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS------------------------------------L 100 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC------------------------------------C
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc------------------------------------c
Confidence 44455555555555555432 245555556666655555542 2
Q ss_pred CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867 470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES 549 (776)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (776)
.+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------- 157 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------------------- 157 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------------------
Confidence 233355666777777777777766666677777888888888877766666555533
Q ss_pred CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV 629 (776)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 629 (776)
+|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|
T Consensus 158 ------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 158 ------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 78888888888887777778888999999999999998888888889999
Q ss_pred CEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867 630 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 674 (776)
Q Consensus 630 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 674 (776)
+.|++++|++.+. ++.|+.++++.|.++|.+|.+++.+
T Consensus 208 ~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 208 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 9999999988744 4468889999999999988876543
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.4e-22 Score=196.42 Aligned_cols=148 Identities=26% Similarity=0.291 Sum_probs=131.4
Q ss_pred cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++
T Consensus 50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---------------------- 107 (251)
T 3m19_A 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT---------------------- 107 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------
T ss_pred cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC----------------------
Confidence 4555678889999999999999988888899999999999999999987777776644
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++
T Consensus 108 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 108 -------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp -------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred -------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 8999999999999888888899999999999999999988888999999
Q ss_pred CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
|++|+|++|++++..+..+..+++|+.|++++|++++....
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99999999999988888899999999999999999976333
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.2e-22 Score=196.52 Aligned_cols=162 Identities=24% Similarity=0.288 Sum_probs=151.6
Q ss_pred ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
++++.|++++|.+++..+..|..+++|++|++++|++.+..+..|..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------------- 83 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------------------------------- 83 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------------------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------------------------------
Confidence 5899999999999999998999999999999999999988888777654
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
+|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|
T Consensus 84 ----------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 84 ----------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ----------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 8999999999999888899999999999999999999998888999999999999999
Q ss_pred ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC-CC
Q 041867 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG-LP 692 (776)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~-~~ 692 (776)
++++..+..|..+++|+.|++++|++++..+..+..+++++.+++++|+|.|+ |.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99988888899999999999999999988888888999999999999999998 54
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.4e-21 Score=197.27 Aligned_cols=204 Identities=23% Similarity=0.225 Sum_probs=153.7
Q ss_pred CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474 (776)
Q Consensus 395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 474 (776)
++..+++.++.+... ..+..+++|+.|++++|.+... +....+++|++|++++|.+.+ ...+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~---------------~~~l 81 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD---------------ISAL 81 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC---------------CGGG
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC---------------chhh
Confidence 444556666655533 2355788999999999998743 333447788888777776541 1356
Q ss_pred ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV 554 (776)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (776)
..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---------------------------- 133 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---------------------------- 133 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------------
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC----------------------------
Confidence 7788888888888888877777778888888888888888877666665544
Q ss_pred cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus 134 -------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 134 -------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp -------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 7888888888888777777788888888888888888777777888888888888
Q ss_pred cCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
++|++++..|..+..+++|+.|++++|++.|.+|.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 88888877777778888888888888888776553
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.6e-21 Score=191.50 Aligned_cols=86 Identities=26% Similarity=0.265 Sum_probs=44.0
Q ss_pred CCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccC-CccccCCCcc
Q 041867 335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN-NHLEGPIPVE 413 (776)
Q Consensus 335 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~ 413 (776)
+|++|++++|+++ .++...+.++++|++|++++|+ .++...+.+|.++++|++|++++ |.+++..+..
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~----------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV----------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCS----------SCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCC----------CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 5556666666655 4554444455555555533332 02223333455555555555555 5555444455
Q ss_pred cCCCCCCcEEEccccccC
Q 041867 414 FCQLDLLQILDISDNNIS 431 (776)
Q Consensus 414 ~~~l~~L~~L~ls~n~l~ 431 (776)
|.++++|++|++++|.+.
T Consensus 101 f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp EECCTTCCEEEEEEECCC
T ss_pred hCCCCCCCEEeCCCCCCc
Confidence 555555555555555544
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.2e-22 Score=214.48 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=47.8
Q ss_pred ccceEEccCCcCCCC----Chhhhcc-CccCCeeecccccccccCc----cccCCCCCCCEEECcCCccCCcC-------
Q 041867 580 LLSGLDLSCNKLIGP----IPPQIGN-LTRIQTLNLSHNDLIGLIP----STFSNLKHVESLDLSNNKLNGKI------- 643 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~------- 643 (776)
+|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|++++|.+....
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 455566666655532 2333433 2366666666666655433 23455566666666666644322
Q ss_pred CccccCCCCCCEEecccccCccc
Q 041867 644 PHQLVELKTLEVFSVAYNNLSGE 666 (776)
Q Consensus 644 ~~~l~~l~~L~~L~l~~N~l~~~ 666 (776)
++.+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 23455566666777777766644
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.8e-21 Score=195.29 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=42.9
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
+|+.|++++|.+++..+ +..+++|+.|++++|.++++.+ +..+++|+.|++++|++++..+ +..+++|+.|+++
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 45555555555553322 5555555555555555554432 5555556666666665553332 5555566666666
Q ss_pred cccCcc
Q 041867 660 YNNLSG 665 (776)
Q Consensus 660 ~N~l~~ 665 (776)
+|++++
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 666553
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.6e-21 Score=189.55 Aligned_cols=176 Identities=21% Similarity=0.283 Sum_probs=99.5
Q ss_pred ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
++++.|++++|.+++..+..|..+++|+.|+|++|++.+..|..|..++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------------------------------- 80 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------------------------------- 80 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-------------------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-------------------------------
Confidence 4566666666666665555666666666666666666655555555433
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
+|++|+|++|.+++..+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|
T Consensus 81 ----------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 81 ----------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ----------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 5666666666666555555566666666666666666665666666666666666666
Q ss_pred ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 714 (776)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~ 714 (776)
++++..+..|..+++|+.|++++|++.+..+ +..+..+ +..++..- ....|..|....+..+.....++
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~-----l~~l~~~-l~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~ 207 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNPFICDCH-----LKWLADY-LHTNPIET--SGARCTSPRRLANKRIGQIKSKK 207 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCEECSGG-----GHHHHHH-HHHCCCBC--SCCBEEESGGGTTCBGGGSCGGG
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCCcCCCCc-----cHHHHHH-HHhCCCCc--cCCCcCCchHHcCCchhhCCHHH
Confidence 6665555556666666666666666654222 1111111 11111110 11268888888777665555443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.7e-21 Score=190.38 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred eEEccCC-cCCCCChhhhccCccCC-eeecccccccccCccccCCCCCCCEEECcCCc-cCCcCCccccCC-CCCCEEec
Q 041867 583 GLDLSCN-KLIGPIPPQIGNLTRIQ-TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVEL-KTLEVFSV 658 (776)
Q Consensus 583 ~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l 658 (776)
+|++++| .+++..+..|.++++|+ .|++++|+++.+.+..|.. ++|+.|++++|+ ++...+..|..+ ++|+.|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 4455554 44444444444455555 5555555554443333433 445555555552 444444444444 45555555
Q ss_pred ccccCc
Q 041867 659 AYNNLS 664 (776)
Q Consensus 659 ~~N~l~ 664 (776)
++|+++
T Consensus 213 ~~N~l~ 218 (239)
T 2xwt_C 213 SQTSVT 218 (239)
T ss_dssp TTCCCC
T ss_pred CCCccc
Confidence 555554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.8e-23 Score=220.66 Aligned_cols=250 Identities=17% Similarity=0.185 Sum_probs=165.5
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcCchhh---hhcCCCCcEEEccCccccceEecCCCcCCCCCCccc-------cCCCC
Q 041867 326 IPSSLGNMKFLQILDLSNNHLTGEIPEHL---AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-------GNLTW 395 (776)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-------~~l~~ 395 (776)
++..+..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+. .+.+.+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------RVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------SCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------ccccchhHHHHHHHHHHhhCCc
Confidence 34445556666777777766653322221 224566666665554332 2233333333 56677
Q ss_pred CCEEeccCCcccc----CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867 396 LQYIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP 471 (776)
Q Consensus 396 L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 471 (776)
|++|++++|.+.. .++..+..+++|++|++++|.+....+. .++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------------------------~l~ 143 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------------------------KIA 143 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------------------------HHH
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------------------------HHH
Confidence 7777777777765 2455566677777777777766421111 112
Q ss_pred hhhccC---------ccCCEEEcccccCCc-cch---hhhcCCCCCCEEeCCCCcccC-----CCCCCCcCCcccccccC
Q 041867 472 DWVDGL---------SQLSHLILGHNNLEG-EVL---VQLCELNQLQLLDLSNNNLHG-----PIPPCFDNTTLYESYSN 533 (776)
Q Consensus 472 ~~~~~l---------~~L~~L~L~~n~l~~-~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~~~~~~ 533 (776)
..+..+ ++|+.|++++|+++. ..+ ..+..+++|++|++++|++.. ..+..+..
T Consensus 144 ~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------- 214 (386)
T 2ca6_A 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------- 214 (386)
T ss_dssp HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG---------
T ss_pred HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc---------
Confidence 223333 788888888888873 233 356678888888888888762 12222322
Q ss_pred CCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC----CCChhhhccCccCCeee
Q 041867 534 SSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI----GPIPPQIGNLTRIQTLN 609 (776)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~ 609 (776)
+++|+.|+|++|.++ ..+|..+..+++|+.|+
T Consensus 215 --------------------------------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 215 --------------------------------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred --------------------------------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 347889999999885 46778889999999999
Q ss_pred ccccccccc----Ccccc--CCCCCCCEEECcCCccCC----cCCccc-cCCCCCCEEecccccCcccCC
Q 041867 610 LSHNDLIGL----IPSTF--SNLKHVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 610 Ls~N~l~~~----~~~~~--~~l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~p 668 (776)
|++|.+++. ++..+ ..+++|+.|+|++|.++. .+|..+ ..+++|+.|++++|++++..+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999876 45666 348999999999999997 477776 568999999999999997664
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=9.7e-21 Score=195.24 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=62.4
Q ss_pred cCCCCCCccc--cCCCCCCEEeccCCccccCCC----cccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCccc
Q 041867 381 SLSGKIPRWL--GNLTWLQYIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNML 453 (776)
Q Consensus 381 ~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l 453 (776)
.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++|++++|++
T Consensus 102 ~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 102 KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence 3334555555 566666666666666665433 2344566666666666666544443332 33444443333332
Q ss_pred CcccccccCCccccccCChhhccCccCCEEEcccccCCccchh---hhcCCCCCCEEeCCCCcccCCCCCC
Q 041867 454 HGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV---QLCELNQLQLLDLSNNNLHGPIPPC 521 (776)
Q Consensus 454 ~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~ 521 (776)
.+.... ..+..+..+++|++|++++|+++..... .+..+++|++|++++|++.+..|..
T Consensus 182 ~~~~~~---------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 182 LGERGL---------MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CHHHHH---------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred ccchhh---------hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 210000 0111223455555555555555422111 1344455555555555555444433
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=7.2e-22 Score=208.47 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=86.6
Q ss_pred hhhccCc-cCCEEEcccccCCccchhh----hcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccc
Q 041867 472 DWVDGLS-QLSHLILGHNNLEGEVLVQ----LCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF 545 (776)
Q Consensus 472 ~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (776)
..+..++ +|++|+|++|++++..+.. +..+ ++|++|++++|++.+.....+...-
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l------------------- 220 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF------------------- 220 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH-------------------
Confidence 4445555 8888888888888766543 3445 5899999999988753221111100
Q ss_pred ccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh----hhhccCccCCeeecccccccccCc-
Q 041867 546 SIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP----PQIGNLTRIQTLNLSHNDLIGLIP- 620 (776)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~- 620 (776)
....++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.++.+
T Consensus 221 -----------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 221 -----------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp -----------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred -----------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 0002378899999999887655 334677899999999998655433
Q ss_pred ------cccCCCCCCCEEECcCCccCCcCCc
Q 041867 621 ------STFSNLKHVESLDLSNNKLNGKIPH 645 (776)
Q Consensus 621 ------~~~~~l~~L~~L~Ls~N~l~~~~~~ 645 (776)
..+..+++|+.||+++|++....+.
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 4677889999999999999866443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=9.7e-21 Score=195.24 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=140.4
Q ss_pred CCCCCEEeccCCccccCCCccc--CCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEF--CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+.. .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------------------~ 137 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------------------A 137 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------------------H
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------------------H
Confidence 4568899999999988888887 88889999999999887532210 0
Q ss_pred ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCC---C-CCCCcCCcccccccCCCCcchhhhcccc
Q 041867 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGP---I-PPCFDNTTLYESYSNSSSLDEQFEIFFS 546 (776)
Q Consensus 471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (776)
...+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+. . +..+..
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---------------------- 195 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK---------------------- 195 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------
Confidence 12234567777777777777777777777777777777777776431 1 111122
Q ss_pred cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChh----hhccCccCCeeecccccccccCccc
Q 041867 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPP----QIGNLTRIQTLNLSHNDLIGLIPST 622 (776)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~ 622 (776)
+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..
T Consensus 196 -------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 196 -------------------------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp -------------------------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred -------------------------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 3367777777777762 232 2466777888888888887776666
Q ss_pred cCCC---CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCC
Q 041867 623 FSNL---KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 688 (776)
Q Consensus 623 ~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~ 688 (776)
+..+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..++.++.+++++|++.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6655 57888888888887 4555553 6788888888887753 33 456677777778777764
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=184.72 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=102.9
Q ss_pred ccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867 478 SQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK 556 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (776)
+.++.|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------------------------------ 81 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------------------------ 81 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT------------------------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC------------------------------
Confidence 345778888888776643 4467777788888888877776666666543
Q ss_pred cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867 557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636 (776)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 636 (776)
+|++|+|++|.+++..+..|..+++|++|+|++|+++++.|..|..+++|+.|+|++
T Consensus 82 -----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 82 -----------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp -----------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred -----------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 677788888887777777777777888888888887777777777777788888888
Q ss_pred CccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
|++++..|..|..+++|+.|++++|++.|..+
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 87777777777777777888887777776544
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=6e-20 Score=192.66 Aligned_cols=225 Identities=21% Similarity=0.143 Sum_probs=121.9
Q ss_pred CCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE-EeccCCccccCCCc
Q 041867 334 KFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY-IIMPNNHLEGPIPV 412 (776)
Q Consensus 334 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~i~~~~~~ 412 (776)
+++++|+|++|+|+ .+|...|.++++|++|++++|++.+. ..+.+|.+++++++ +.+++|++..+.++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~----------i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCE----------ECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCc----------cChhHhhcchhhhhhhcccCCcccccCch
Confidence 34555555555555 55555555555555555444433210 12234555555543 44445666656666
Q ss_pred ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCC
Q 041867 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLE 491 (776)
Q Consensus 413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~ 491 (776)
.|..+++|++|++++|++....+.. +....++..+++.+ +.+.
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~------------------------------------~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVH------------------------------------KIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCT------------------------------------TCCBSSCEEEEEESCTTCC
T ss_pred hhhhccccccccccccccccCCchh------------------------------------hcccchhhhhhhccccccc
Confidence 6666666777766666665433322 22223344444433 3444
Q ss_pred ccchhhhcCCC-CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867 492 GEVLVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570 (776)
Q Consensus 492 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (776)
...+..|..+. .++.|++++|+|+.+.+..|..
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~---------------------------------------------- 176 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG---------------------------------------------- 176 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT----------------------------------------------
T ss_pred cccccchhhcchhhhhhccccccccCCChhhccc----------------------------------------------
Confidence 44444444443 4666677777666554444432
Q ss_pred EEeccccccccceEEccC-CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccC
Q 041867 571 YIYQGKVLSLLSGLDLSC-NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 649 (776)
Q Consensus 571 ~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 649 (776)
.+|++|++++ |.++.+.+++|.++++|++|+|++|+|+.+++..|. +|+.|.+.++.--..+| .+..
T Consensus 177 --------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 177 --------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp --------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred --------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence 1466677753 555555555677777777777777777766655544 34444443333233455 3666
Q ss_pred CCCCCEEecccccC
Q 041867 650 LKTLEVFSVAYNNL 663 (776)
Q Consensus 650 l~~L~~L~l~~N~l 663 (776)
+++|+.++++++.-
T Consensus 245 l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 245 LVALMEASLTYPSH 258 (350)
T ss_dssp CCSCCEEECSCHHH
T ss_pred CcChhhCcCCCCcc
Confidence 77777777765543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.5e-19 Score=185.77 Aligned_cols=194 Identities=24% Similarity=0.339 Sum_probs=125.3
Q ss_pred CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCC
Q 041867 331 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPI 410 (776)
Q Consensus 331 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 410 (776)
..+++|++|++++|.+. .++. +..+++|+.|++++|.+. +. +. +..+++|++|++++|.+.+.
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~-----------~~-~~-~~~l~~L~~L~L~~n~l~~~- 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQIT-----------DL-AP-LKNLTKITELELSGNPLKNV- 100 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCC-----------CC-GG-GTTCCSCCEEECCSCCCSCC-
T ss_pred HHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCC-----------CC-hh-HccCCCCCEEEccCCcCCCc-
Confidence 34566667777766666 4542 334666666665544433 22 22 66666666666666666643
Q ss_pred CcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccC
Q 041867 411 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 490 (776)
Q Consensus 411 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 490 (776)
..+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~-------------------------------------~-~l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDV-------------------------------------T-PLAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC-------------------------------------G-GGTTCTTCCEEECCSSCC
T ss_pred -hhhcCCCCCCEEECCCCCCCCc-------------------------------------h-hhcCCCCCCEEECCCCcc
Confidence 2466666666666666665521 1 155667777777777777
Q ss_pred CccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867 491 EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570 (776)
Q Consensus 491 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (776)
++..+ +..+++|+.|++++|++.+..+ +..
T Consensus 142 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~---------------------------------------------- 171 (308)
T 1h6u_A 142 TNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN---------------------------------------------- 171 (308)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------------------------
T ss_pred CcCcc--ccCCCCccEEEccCCcCCCChh--hcC----------------------------------------------
Confidence 65543 6677777777777777764333 333
Q ss_pred EEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 571 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 172 -------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 -------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred -------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2367788888888775433 7778888888888888887653 7778888888888888863
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1e-21 Score=205.66 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=54.5
Q ss_pred cccceEEccCCc-CCCCChhhhccCccCCeeeccccc-ccccCccccCCCCCCCEEECcCCccCCcCCccccCC-CCCCE
Q 041867 579 SLLSGLDLSCNK-LIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEV 655 (776)
Q Consensus 579 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~ 655 (776)
++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++. +.+..+ .+++.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~ 297 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPH 297 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTT
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcc
Confidence 367777777776 555556667777777777777774 22222224666777777777777 332 222222 23555
Q ss_pred EecccccCcccCCCccc
Q 041867 656 FSVAYNNLSGEIPEWTA 672 (776)
Q Consensus 656 L~l~~N~l~~~~p~~~~ 672 (776)
|++++|++++..|..+.
T Consensus 298 L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 298 LQINCSHFTTIARPTIG 314 (336)
T ss_dssp SEESCCCSCCTTCSSCS
T ss_pred eEEecccCccccCCccc
Confidence 56777777777666543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.2e-19 Score=190.41 Aligned_cols=204 Identities=20% Similarity=0.180 Sum_probs=143.2
Q ss_pred CEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEcc
Q 041867 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS 367 (776)
Q Consensus 288 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 367 (776)
+.++.+++.++ .+|..+. +++++|++++|+|+...+.+|.++++|++|+|++|++.+.+|..+|.+++++.++..
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~- 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI- 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-
Confidence 46777888887 7777653 588999999999996666789999999999999999876889888888888876432
Q ss_pred CccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccc-cccCCCCCCCCC--CCccc
Q 041867 368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD-NNISGSLPSCFH--PLSIK 444 (776)
Q Consensus 368 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~--~~~L~ 444 (776)
+..|+++...+.+|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|. ...++
T Consensus 87 ---------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 87 ---------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp ---------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred ---------ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 344556667788999999999999999999988877888888899999876 456655555444 23455
Q ss_pred EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCCccchhhhcCCCCCCEEeCCCCcccCCCC
Q 041867 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519 (776)
Q Consensus 445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 519 (776)
.|++++|+++ .+.+..| ...+|+.+++.+ |.++.+.+..|.++++|++|++++|+++...+
T Consensus 158 ~L~L~~N~i~-------------~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 158 ILWLNKNGIQ-------------EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEECCSSCCC-------------EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred hhcccccccc-------------CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 5555444443 1222222 334566666653 44554444555666666666666666654443
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.3e-20 Score=195.40 Aligned_cols=161 Identities=23% Similarity=0.193 Sum_probs=111.4
Q ss_pred cCCEEEcccccCCccchhhhc-CCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 479 QLSHLILGHNNLEGEVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 479 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
.++.|+|++|++++..+..|. .+++|+.|+|++|+|.+..+..|..++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------------------------------- 88 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------------------------------- 88 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-------------------------------
Confidence 466677777777766666665 677777777777777766666665533
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
+|++|+|++|++++..+..|..+++|+.|+|++|+++++.+..|.++++|+.|+|++|
T Consensus 89 ----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 89 ----------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp ----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 6777777777777666667777777777777777777777777777777777777777
Q ss_pred ccCCcCCccc---cCCCCCCEEecccccCcccCCCccccccc--cCcccccCCCCCCCCC
Q 041867 638 KLNGKIPHQL---VELKTLEVFSVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLP 692 (776)
Q Consensus 638 ~l~~~~~~~l---~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--l~~~~~~~n~~~c~~~ 692 (776)
+++...+..| ..+++|+.|+|++|+|+...+..+..++. ++.+++++|||.|+|+
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 7775554444 45777777777777777554455555554 3667778888888775
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1e-21 Score=209.56 Aligned_cols=240 Identities=20% Similarity=0.234 Sum_probs=167.8
Q ss_pred CcccceeecccccCccCC----CccCCCCCCCCEEEccCCcC---CCcCchhh------hhcCCCCcEEEccCccccceE
Q 041867 309 LPSLYLFNNSMNALDGSI----PSSLGNMKFLQILDLSNNHL---TGEIPEHL------AVGCVNLQSLALSNNNLQEGL 375 (776)
Q Consensus 309 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~~~~------~~~l~~L~~L~ls~n~l~~~l 375 (776)
+++|+.|++++|.+.... +..+..+++|++|++++|.+ .+.+|..+ +..+++|++|++++|.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--- 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG--- 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC---
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC---
Confidence 567777777777776542 33467788899999988644 44555554 346889999996666543
Q ss_pred ecCCCcCCC----CCCccccCCCCCCEEeccCCccccCCCcccC----CC---------CCCcEEEccccccCCCCCCCC
Q 041867 376 YLNNNSLSG----KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC----QL---------DLLQILDISDNNISGSLPSCF 438 (776)
Q Consensus 376 ~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~l---------~~L~~L~ls~n~l~~~~~~~~ 438 (776)
+ .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|++......
T Consensus 108 --------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~-- 177 (386)
T 2ca6_A 108 --------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-- 177 (386)
T ss_dssp --------TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--
T ss_pred --------HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--
Confidence 3 2566778899999999999998754444433 33 7788888888776521000
Q ss_pred CCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc-----cchhhhcCCCCCCEEeCCCCc
Q 041867 439 HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-----EVLVQLCELNQLQLLDLSNNN 513 (776)
Q Consensus 439 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~ 513 (776)
.+...+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.
T Consensus 178 ------------------------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 178 ------------------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp ------------------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred ------------------------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 112356677888888888888873 233367788888888888888
Q ss_pred cc----CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCC
Q 041867 514 LH----GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589 (776)
Q Consensus 514 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 589 (776)
++ ..+|..+.. +++|++|+|++|
T Consensus 228 l~~~g~~~l~~~l~~-----------------------------------------------------~~~L~~L~L~~n 254 (386)
T 2ca6_A 228 FTHLGSSALAIALKS-----------------------------------------------------WPNLRELGLNDC 254 (386)
T ss_dssp CHHHHHHHHHHHGGG-----------------------------------------------------CTTCCEEECTTC
T ss_pred CCcHHHHHHHHHHcc-----------------------------------------------------CCCcCEEECCCC
Confidence 75 223333322 347888899888
Q ss_pred cCCCC----Chhhhcc--CccCCeeecccccccc----cCcccc-CCCCCCCEEECcCCccCCcCC
Q 041867 590 KLIGP----IPPQIGN--LTRIQTLNLSHNDLIG----LIPSTF-SNLKHVESLDLSNNKLNGKIP 644 (776)
Q Consensus 590 ~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~~ 644 (776)
.+++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88755 4566644 8999999999999998 356665 668999999999999987664
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=5.8e-21 Score=199.93 Aligned_cols=256 Identities=20% Similarity=0.208 Sum_probs=154.4
Q ss_pred CcCEEEceeccCcccCChhhhccC--cccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867 286 RLGMLDISNNNFRGHIPIEIGDVL--PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363 (776)
Q Consensus 286 ~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 363 (776)
.++.++++++.+. +..+.. + +.++.+++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3567777776654 222222 3 6788888888888765544 5567888888888888764312334456788888
Q ss_pred EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCC-ccccC-CCcccCCCCCCcEEEcccc-ccCCCCCCCCCC
Q 041867 364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN-HLEGP-IPVEFCQLDLLQILDISDN-NISGSLPSCFHP 440 (776)
Q Consensus 364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~ 440 (776)
|++++|.+ ++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++.
T Consensus 123 L~L~~~~l-----------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------- 184 (336)
T 2ast_B 123 LSLEGLRL-----------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------- 184 (336)
T ss_dssp EECTTCBC-----------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------
T ss_pred EeCcCccc-----------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------
Confidence 88555543 3345666777788888888887 55542 4455667777777777777 65421
Q ss_pred CcccEEEcCCcccCcccccccCCccccccCChhhccCc-cCCEEEcccc--cCC-ccchhhhcCCCCCCEEeCCCCc-cc
Q 041867 441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS-QLSHLILGHN--NLE-GEVLVQLCELNQLQLLDLSNNN-LH 515 (776)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~ 515 (776)
..+..+..++ +|++|++++| .++ +..+..+..+++|+.|++++|. ++
T Consensus 185 ----------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 185 ----------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp ----------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred ----------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 1233455566 6777777666 344 3344455666777777777776 44
Q ss_pred CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCc-CCCC
Q 041867 516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNK-LIGP 594 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~ 594 (776)
+..+..+.. +++|++|++++|. +...
T Consensus 237 ~~~~~~l~~-----------------------------------------------------l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 237 NDCFQEFFQ-----------------------------------------------------LNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp GGGGGGGGG-----------------------------------------------------CTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHhC-----------------------------------------------------CCCCCEeeCCCCCCCCHH
Confidence 333333332 2367777777764 2211
Q ss_pred ChhhhccCccCCeeecccccccccCccccCCC-CCCCEEECcCCccCCcCCccccC
Q 041867 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVE 649 (776)
Q Consensus 595 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~ 649 (776)
....+..+++|+.|++++| ++. ..+..+ .+++.|++++|++++..|..++.
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 1124666777777777777 332 223333 23555667777777777766553
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=6.8e-19 Score=172.27 Aligned_cols=137 Identities=24% Similarity=0.216 Sum_probs=87.9
Q ss_pred ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ 557 (776)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (776)
++|+.|+|++|.+++..+..|..+++|+.|+|++|++....+..|..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~------------------------------- 88 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT------------------------------- 88 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-------------------------------
Confidence 5666677777766666666666666677777776666655555554433
Q ss_pred ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867 558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 637 (776)
+|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus 89 ----------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 89 ----------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp ----------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred ----------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 5666666666666665666666666666666666666 33555566666666666666
Q ss_pred ccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
++++..+..|..+++|+.|++++|++.|..+
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6665555566666666666666666665443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=5.5e-19 Score=194.52 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=59.6
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC-------CEEECcCCccCCcCCccccCCCC
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV-------ESLDLSNNKLNGKIPHQLVELKT 652 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~ 652 (776)
+|+.|+|++|++++ +|. |. ++|+.|+|++|.|+.++ . |.. +| +.|+|++|+|+ .+|..+..+++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP-A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC-C-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh-h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 67777777777775 444 54 77777777777777443 3 443 56 88888888887 46666666888
Q ss_pred CCEEecccccCcccCCCcccccc
Q 041867 653 LEVFSVAYNNLSGEIPEWTAQFA 675 (776)
Q Consensus 653 L~~L~l~~N~l~~~~p~~~~~~~ 675 (776)
|+.|++++|++++.+|..+..+.
T Consensus 232 L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHHHHhh
Confidence 88888888888877776665543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=168.73 Aligned_cols=146 Identities=25% Similarity=0.281 Sum_probs=120.1
Q ss_pred cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (776)
..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------- 100 (208)
T 2o6s_A 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT---------------------- 100 (208)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc----------------------
Confidence 3444567788888899988888877777788889999999999988877666665544
Q ss_pred CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628 (776)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 628 (776)
+|++|++++|.+++..+..|..+++|+.|++++|+++++.+..|..+++
T Consensus 101 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 101 -------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp -------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 7899999999998877778889999999999999999888878888999
Q ss_pred CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 674 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 674 (776)
|+.|++++|++.+ .+++|+.|+++.|.++|.+|.+++.+
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 9999999998764 34578899999999999888866543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.3e-18 Score=169.02 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=130.2
Q ss_pred CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE 560 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (776)
+.++++++.++.+ |..+. ++++.|++++|++.+..+..|..++
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------- 56 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence 5677777777744 33332 6788999999988877776776644
Q ss_pred eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 640 (776)
+|+.|+|++|.+++..|..|.++++|++|+|++|+++.+.+..|.++++|+.|+|++|+++
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7889999999988888888999999999999999998888788888899999999999998
Q ss_pred CcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867 641 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694 (776)
Q Consensus 641 ~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~ 694 (776)
+..|..|..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|++.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 888888888899999999999998877777888888888999999999988764
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=168.54 Aligned_cols=175 Identities=17% Similarity=0.232 Sum_probs=146.2
Q ss_pred CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH 559 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (776)
+.+++++|.++.+ |..+ .+.++.|++++|++++..+ ..|..+
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l---------------------------------- 56 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKL---------------------------------- 56 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGC----------------------------------
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccC----------------------------------
Confidence 5788888888754 4333 3467899999999987754 345443
Q ss_pred ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867 560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639 (776)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 639 (776)
++|++|+|++|.+++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++
T Consensus 57 -------------------~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 57 -------------------PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred -------------------CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 4899999999999988888999999999999999999999988999999999999999999
Q ss_pred CCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCC
Q 041867 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMS 703 (776)
Q Consensus 640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~ 703 (776)
++..|..|..+++|+.|++++|++++..|..+..+++++.+++++|||.|+|++. .|..|....
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~ 197 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLK 197 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGT
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHC
Confidence 9888999999999999999999999888988999999999999999999999752 477776666
Q ss_pred CCCCCCCC
Q 041867 704 EASIGNER 711 (776)
Q Consensus 704 ~~~~~~~~ 711 (776)
+..+....
T Consensus 198 g~~l~~l~ 205 (220)
T 2v70_A 198 EIPIQDVA 205 (220)
T ss_dssp TEEGGGSC
T ss_pred CCChhhCC
Confidence 65444433
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.4e-18 Score=173.03 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=60.1
Q ss_pred cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 658 (776)
++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 3677777777777654 567777888888888888877654 77788888888888888743 3 3777888888888
Q ss_pred ccccCcc
Q 041867 659 AYNNLSG 665 (776)
Q Consensus 659 ~~N~l~~ 665 (776)
++|+++.
T Consensus 208 ~~n~i~~ 214 (291)
T 1h6t_A 208 FSQECLN 214 (291)
T ss_dssp EEEEEEC
T ss_pred cCCcccC
Confidence 8888775
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.4e-18 Score=165.81 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=134.5
Q ss_pred cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccc
Q 041867 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558 (776)
Q Consensus 479 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (776)
..+.++.+++.++.... .+ .++|++|++++|++.+..|..|..++
T Consensus 20 s~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------------- 64 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLI-------------------------------- 64 (229)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred eCCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence 35678888888774433 23 37899999999999988888777654
Q ss_pred cceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCc
Q 041867 559 HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638 (776)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 638 (776)
+|++|+|++|++....+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+
T Consensus 65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 89999999999987777888999999999999999998888889999999999999999
Q ss_pred cCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 639 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 639 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
++ .+|..+..+++|+.|++++|++++..+..+..+..++.+++.+|||.|+|+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 98 678888899999999999999997777778888999999999999999986
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=163.95 Aligned_cols=134 Identities=22% Similarity=0.343 Sum_probs=120.6
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
.+++|++++|.++ .+|..|.++++|+.|+|++|.|+++.+..|.++++|++|+|++|++++..|..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 7999999999998 677899999999999999999999999999999999999999999999988999999999999999
Q ss_pred cccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCC
Q 041867 660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN 714 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~~ 714 (776)
+|+++...+..+..++.++.+++++|||.|+|++. .|..|....+..+.....+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~ 181 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHH
Confidence 99999877777889999999999999999999752 58888888777665555443
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=3.6e-18 Score=162.03 Aligned_cols=134 Identities=22% Similarity=0.376 Sum_probs=118.5
Q ss_pred ccceEEccCCcCCCCChh-hhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867 580 LLSGLDLSCNKLIGPIPP-QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 658 (776)
.+++|++++|.+++..+. .|..+++|++|+|++|.++++.|..|.++++|++|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 688999999999977664 5899999999999999999999999999999999999999999988888999999999999
Q ss_pred ccccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCC
Q 041867 659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDD 713 (776)
Q Consensus 659 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~ 713 (776)
++|++++..|..+..+++++.+++++|+|.|+|++. .|..|....+..+......
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~ 180 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHh
Confidence 999999998998899999999999999999999752 6888888877765554443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.2e-18 Score=181.44 Aligned_cols=145 Identities=26% Similarity=0.296 Sum_probs=119.9
Q ss_pred cCChhhc-cCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccccc
Q 041867 469 SIPDWVD-GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI 547 (776)
Q Consensus 469 ~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (776)
..+..|. ++++|+.|+|++|++++..+..|..+++|++|+|++|++.+..+..|..++
T Consensus 54 l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------------------- 112 (361)
T 2xot_A 54 LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ--------------------- 112 (361)
T ss_dssp ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------
T ss_pred cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc---------------------
Confidence 3444555 788899999999999888888888899999999999998877777776644
Q ss_pred CCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCcccc---C
Q 041867 548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF---S 624 (776)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~ 624 (776)
+|+.|+|++|++++..|..|..+++|+.|+|++|+++++.+..| .
T Consensus 113 --------------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 113 --------------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp --------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred --------------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 78999999999988888889999999999999999998877777 5
Q ss_pred CCCCCCEEECcCCccCCcCCccccCCCC--CCEEecccccCccc
Q 041867 625 NLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSGE 666 (776)
Q Consensus 625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~ 666 (776)
.+++|+.|+|++|+|+...+..+..++. ++.|++++|++.|.
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 6899999999999999777677777776 48899999999864
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.1e-17 Score=161.38 Aligned_cols=139 Identities=27% Similarity=0.265 Sum_probs=110.9
Q ss_pred CccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867 477 LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK 556 (776)
Q Consensus 477 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (776)
.++|+.|++++|++++..+..|..+++|++|++++|++.+..+..|..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------ 76 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT------------------------------ 76 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------------------------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC------------------------------
Confidence 35788888888888877777788888888888888888866666665543
Q ss_pred cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867 557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636 (776)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 636 (776)
+|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus 77 -----------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 77 -----------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 788888888888877777788888888888888888887777788888888888888
Q ss_pred CccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867 637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
|++++..+..+..+++|+.|++++|++.+..|
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 88887766677888888888888888876544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.6e-17 Score=182.33 Aligned_cols=58 Identities=29% Similarity=0.468 Sum_probs=30.5
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+|+.|+|++|.+.+..| +..+++|+.|+|++|.++++ ..+..+++|+.|+|++|++..
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 45555555555554433 55555555555555555543 235555555555555555543
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=9e-18 Score=167.87 Aligned_cols=170 Identities=21% Similarity=0.236 Sum_probs=126.7
Q ss_pred CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472 (776)
Q Consensus 393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 472 (776)
+.++..+++++|.+.+.. .+..+++|+.|++++|.+.. ++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-------------------------------------l~- 57 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-------------------------------------LA- 57 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-------------------------------------CT-
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-------------------------------------ch-
Confidence 445556666666666433 45566677777777766552 12
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG 552 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (776)
.+..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+...
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~------------------------------ 105 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS------------------------------ 105 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC------------------------------
T ss_pred HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc------------------------------
Confidence 35667788888888888876655 7888888888888888875432111
Q ss_pred CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867 553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 632 (776)
++|++|++++|.+++. ..+..+++|+.|++++|+++++ ..+..+++|+.|
T Consensus 106 --------------------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L 155 (263)
T 1xeu_A 106 --------------------------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVL 155 (263)
T ss_dssp --------------------------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEE
T ss_pred --------------------------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEE
Confidence 2688999999998854 3588899999999999999876 368889999999
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCccc
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 666 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 666 (776)
++++|++++. ..+..+++|+.|++++|++++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999866 6688889999999999999865
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.8e-17 Score=164.75 Aligned_cols=58 Identities=29% Similarity=0.456 Sum_probs=38.3
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+|+.|++++|.+++..+ +..+++|+.|++++|.++++. .+..+++|+.|++++|+++.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence 56666666666664433 666777777777777776542 36677777777777777764
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.5e-17 Score=178.00 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=20.2
Q ss_pred ceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867 582 SGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624 (776)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 624 (776)
+.|+|++|.|+ .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 55555555554 2344444455555555555555444444443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.2e-17 Score=155.46 Aligned_cols=157 Identities=21% Similarity=0.255 Sum_probs=122.2
Q ss_pred CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC-CCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH 559 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (776)
+.+++++|.++.+ |..+. +++++|++++|++.+..+. .|..+
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l---------------------------------- 53 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRL---------------------------------- 53 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGC----------------------------------
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccC----------------------------------
Confidence 6778888887643 33332 3788999999988876664 35443
Q ss_pred ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867 560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639 (776)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 639 (776)
++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|++|++
T Consensus 54 -------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 54 -------------------PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp -------------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred -------------------CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 3799999999999988899999999999999999999999888899999999999999999
Q ss_pred CCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694 (776)
Q Consensus 640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~ 694 (776)
++..|..+..+++|+.|++++|+++|..+.. .....++...+.++...|.-|..
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCChH
Confidence 9888999999999999999999999866531 11122344455667777876643
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3e-17 Score=170.57 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=55.9
Q ss_pred ccceEEccCCcCCCCChhhhccCccCC-eeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEe
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQ-TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 657 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 657 (776)
+|+.|++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6777777776 6656667777777777 777777 66667777777777777777777777766667777777777765
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8.3e-17 Score=179.39 Aligned_cols=197 Identities=22% Similarity=0.304 Sum_probs=134.1
Q ss_pred ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390 (776)
Q Consensus 311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~ 390 (776)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|++. +..+ +
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~-----------~~~~--l 83 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLT-----------DIKP--L 83 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCC-----------CCGG--G
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCC-----------CChh--h
Confidence 45555666665554322 345677777777777776 5542 345677777775554433 2222 6
Q ss_pred cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+ +
T Consensus 84 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-------------------------------------l 124 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-------------------------------------I 124 (605)
T ss_dssp GGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-------------------------------------C
T ss_pred ccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-------------------------------------C
Confidence 6666677777777666642 245666666666666665542 1
Q ss_pred ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550 (776)
Q Consensus 471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (776)
..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..| +..
T Consensus 125 -~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-------------------------- 173 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG-------------------------- 173 (605)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT--------------------------
T ss_pred -ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc--------------------------
Confidence 2367788999999999999876 578889999999999999887655 444
Q ss_pred CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624 (776)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 624 (776)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.+...+.
T Consensus 174 ---------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 174 ---------------------------LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp ---------------------------CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred ---------------------------CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 34899999999999864 4688899999999999999876444433
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=152.42 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=99.9
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (776)
+..+++|+.|++++|.++.. ..+..+++|++|++++|++.+..+..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--------------------------- 112 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLT--------------------------- 112 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---------------------------
T ss_pred HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCC---------------------------
Confidence 56677888888888866533 3677788888888888888766666665543
Q ss_pred ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc-ccccCccccCCCCCCCEE
Q 041867 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNLKHVESL 632 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 632 (776)
+|++|++++|.+++..+..+..+++|++|++++|. ++.+ + .+..+++|+.|
T Consensus 113 --------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L 164 (197)
T 4ezg_A 113 --------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSL 164 (197)
T ss_dssp --------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEE
T ss_pred --------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEE
Confidence 78888888888887778888888888888888887 6654 3 57888888888
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 665 (776)
++++|++++. + .+..+++|+.|++++|++..
T Consensus 165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 8888888753 3 67788888888888888753
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=8.9e-19 Score=194.16 Aligned_cols=208 Identities=18% Similarity=0.151 Sum_probs=146.8
Q ss_pred cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867 391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470 (776)
Q Consensus 391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 470 (776)
..++.|+.|++++|+++ .+|..++.+++|+.|++++|......+ ..+..+...+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~-----------------------~ll~~~~~~~~~ 401 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII-----------------------LLMRALDPLLYE 401 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------HHHHHHCTGGGH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH-----------------------HHHHhcccccCC
Confidence 45677778888888876 567777777888888776654210000 001111223355
Q ss_pred ChhhccCccCCEEE-cccccCCccchh-----hhcC--CCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhh
Q 041867 471 PDWVDGLSQLSHLI-LGHNNLEGEVLV-----QLCE--LNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFE 542 (776)
Q Consensus 471 ~~~~~~l~~L~~L~-L~~n~l~~~~~~-----~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (776)
|..+..+++|+.|+ ++.|.+...... .+.. ...|+.|++++|.++++ |. +..+
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l----------------- 462 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQL----------------- 462 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGG-----------------
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-cccc-----------------
Confidence 66677777777776 555543321100 0111 13589999999999864 43 5543
Q ss_pred cccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccc
Q 041867 543 IFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622 (776)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 622 (776)
++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++++ | .
T Consensus 463 ------------------------------------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~ 503 (567)
T 1dce_A 463 ------------------------------------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-G 503 (567)
T ss_dssp ------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-G
T ss_pred ------------------------------------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-c
Confidence 48999999999999 7788999999999999999999974 5 8
Q ss_pred cCCCCCCCEEECcCCccCCcC-CccccCCCCCCEEecccccCcccCCCcc---ccccccCcc
Q 041867 623 FSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSVAYNNLSGEIPEWT---AQFATFNES 680 (776)
Q Consensus 623 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~l~~~ 680 (776)
+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|... ..+++++.+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999999999999999877 9999999999999999999998766532 224455544
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=2.8e-16 Score=149.83 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=131.1
Q ss_pred hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553 (776)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (776)
...+++|+.|++++|.++.. + .+..+++|++|++++|.+... ..+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~--~~l~~----------------------------- 86 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNY--NPISG----------------------------- 86 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCC--GGGTT-----------------------------
T ss_pred hhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcc--hhhhc-----------------------------
Confidence 46788999999999999944 3 688999999999999976532 23333
Q ss_pred ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD 633 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 633 (776)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 87 ------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 87 ------------------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp ------------------------CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred ------------------------CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 34899999999999987888999999999999999999998889999999999999
Q ss_pred CcCCc-cCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCC
Q 041867 634 LSNNK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 687 (776)
Q Consensus 634 Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~ 687 (776)
+++|+ ++ .+| .+..+++|+.|++++|+++. ++ .+..+++++.+++++|+.
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 99998 66 555 68999999999999999996 44 578899999999999974
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.4e-16 Score=162.59 Aligned_cols=220 Identities=14% Similarity=0.130 Sum_probs=147.6
Q ss_pred CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCc----ccc
Q 041867 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNH----LEG 408 (776)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----i~~ 408 (776)
+++|+.+++.+ .++ .++..+|.+|++|+.+++++|.+ ..+.+.+|.++.++..+....+. ...
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i-----------~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTA-----------PNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSC-----------CEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCc-----------cccchhhhcCCCceEEecCcchhhhhcccc
Confidence 67777777766 666 66777777777777777444433 33455566666666666555422 122
Q ss_pred CCCcccCCCCCCc-EEEccccccCC--CCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh-ccCccCCEEE
Q 041867 409 PIPVEFCQLDLLQ-ILDISDNNISG--SLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV-DGLSQLSHLI 484 (776)
Q Consensus 409 ~~~~~~~~l~~L~-~L~ls~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~~L~~L~ 484 (776)
....+|.++..|+ .+.+....-.. .......+.++..+.+.++-. ......+ ..+++|+.++
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--------------~~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD--------------NADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC--------------HHHHHHHHHHCTTCCEEE
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec--------------HHHHHHHHHhcCCCeEEE
Confidence 2334455555555 33333221100 000111233444443332210 0111111 2489999999
Q ss_pred cccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeee
Q 041867 485 LGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEF 564 (776)
Q Consensus 485 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (776)
|++|+++.+...+|.++++|+.+++.+| +..+.+.+|.++.
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-------------------------------------- 273 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-------------------------------------- 273 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT--------------------------------------
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh--------------------------------------
Confidence 9999999999999999999999999998 8878888888865
Q ss_pred eecceEEEeccccccccc-eEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867 565 TTKNIVYIYQGKVLSLLS-GLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634 (776)
Q Consensus 565 ~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 634 (776)
+|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 274 ---------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 ---------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ---------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ---------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 898 999998 787788899999999999999999999999999999999999874
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=3.9e-16 Score=156.00 Aligned_cols=152 Identities=23% Similarity=0.271 Sum_probs=130.7
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG 552 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (776)
.+..+++|+.|++++|.++... .+..+++|+.|++++|++.+..+ +..
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~---------------------------- 83 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKD---------------------------- 83 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTT----------------------------
T ss_pred chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hcc----------------------------
Confidence 4788999999999999998653 68899999999999999987655 544
Q ss_pred CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867 553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 632 (776)
+++|++|++++|++++.. . +.. ++|+.|++++|+++++ ..+..+++|+.|
T Consensus 84 -------------------------l~~L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 84 -------------------------LTKLEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp -------------------------CSSCCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred -------------------------CCCCCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 348999999999999643 3 333 9999999999999976 369999999999
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~ 690 (776)
++++|++++. + .+..+++|+.|++++|++++. ..+..++.++.+++++|++.|.
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999965 4 688999999999999999976 5578899999999999998765
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=5.1e-15 Score=156.67 Aligned_cols=248 Identities=10% Similarity=0.123 Sum_probs=144.5
Q ss_pred CccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcc
Q 041867 327 PSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL 406 (776)
Q Consensus 327 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 406 (776)
..+|.++ +|+.+.+..+ ++ .++..+|.++ +|+.+.+.. .+..+.+.+|.+|++|+.+++++|.+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~------------~l~~I~~~aF~~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS------------TLEQLKEDIFYYCYNLKKADLSKTKI 192 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT------------TCCEECSSTTTTCTTCCEEECTTSCC
T ss_pred HhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC------------CccEehHHHhhCcccCCeeecCCCcc
Confidence 3444443 4555555544 44 5555555443 455555332 12223444555555666666655555
Q ss_pred ccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEc
Q 041867 407 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLIL 485 (776)
Q Consensus 407 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L 485 (776)
..+...+|. ..+|+.+.+..+ +..+....|. +.+|+.+.+..+ ++.+...+|.+ .+|+.+.+
T Consensus 193 ~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--------------l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 193 TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--------------VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--------------CCEECTTTTTT-CCCSEEEE
T ss_pred eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--------------ccCcccccccc-CCccEEEe
Confidence 554444554 355565555533 4444444444 555555544332 12234445555 56777777
Q ss_pred ccccCCccchhhhcCCCCCCEEeCCCCccc-----CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE 560 (776)
Q Consensus 486 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (776)
.+.++.+...+|.++++|+.+++.+|.+. .+.+.+|.++.
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~---------------------------------- 300 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP---------------------------------- 300 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT----------------------------------
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc----------------------------------
Confidence 34556566667777777777777666543 24444555433
Q ss_pred eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 640 (776)
+|+.+++. +.+..+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus 301 -------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 301 -------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp -------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred -------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 67777776 3466566677777777777777554 666677777777 7888888777777
Q ss_pred CcCCccccCCC-CCCEEecccccCc
Q 041867 641 GKIPHQLVELK-TLEVFSVAYNNLS 664 (776)
Q Consensus 641 ~~~~~~l~~l~-~L~~L~l~~N~l~ 664 (776)
...+..|..++ .++.+.+..+.+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccccccccCCCCCccEEEeCHHHHH
Confidence 66666776663 6777777776654
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=4.6e-15 Score=157.00 Aligned_cols=252 Identities=16% Similarity=0.097 Sum_probs=202.5
Q ss_pred CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV 412 (776)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 412 (776)
+..++.+.+.+ .++ .++...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..+.+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~------------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG------------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED 174 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT------------CCEECTTTTTTC-CCCEEECCT-TCCEECSS
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC------------ccEECHHhcCCC-CceEEEeCC-CccEehHH
Confidence 46777888765 466 8888888875 7999996544 334566778875 699999986 67778888
Q ss_pred ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 492 (776)
Q Consensus 413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 492 (776)
+|.++++|+.+++++|.+..+....|.+.+|+.+.+..+ +..+...+|.+|++|+.+.+.++ ++.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--------------l~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--------------LKEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--------------CCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--------------hheehhhHhhCCCCCCEEecCCC-ccC
Confidence 999999999999999999988888998889999977543 33466778999999999999875 676
Q ss_pred cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEE
Q 041867 493 EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572 (776)
Q Consensus 493 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (776)
+...+|.+ .+|+.+.+. +.+..+...+|..+.
T Consensus 240 I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~---------------------------------------------- 271 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCP---------------------------------------------- 271 (401)
T ss_dssp ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCT----------------------------------------------
T ss_pred cccccccc-CCccEEEeC-CCccEEChhHhhCCC----------------------------------------------
Confidence 77788888 789999994 557767777887755
Q ss_pred eccccccccceEEccCCcCC-----CCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccc
Q 041867 573 YQGKVLSLLSGLDLSCNKLI-----GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQL 647 (776)
Q Consensus 573 ~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 647 (776)
+|+.+++.+|.+. .+.+.+|.++++|+.+++. +.++.+...+|.++++|+.++|.+| ++.+.+.+|
T Consensus 272 -------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 272 -------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp -------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred -------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 7999999888765 4667889999999999999 4588888899999999999999665 777778899
Q ss_pred cCCCCCCEEecccccCcccCCCccccc
Q 041867 648 VELKTLEVFSVAYNNLSGEIPEWTAQF 674 (776)
Q Consensus 648 ~~l~~L~~L~l~~N~l~~~~p~~~~~~ 674 (776)
..+ +|+.+++++|.+....+..|..+
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CCC-CCCEEEEcCCCCcccccccccCC
Confidence 999 99999999998775544444433
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.4e-15 Score=142.35 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=104.2
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
+|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 78999999999998888889999999999999999998888889999999999999999998888888999999999999
Q ss_pred cccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
+|++++..+..+..+++++.+++++|++.|+|+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997777667889999999999999999986
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5e-18 Score=188.16 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=134.2
Q ss_pred cCChhhccCccCCEEEccccc-------------CCccchhhhcCCCCCCEEe-CCCCcccCCCCCCCcCCcccccccCC
Q 041867 469 SIPDWVDGLSQLSHLILGHNN-------------LEGEVLVQLCELNQLQLLD-LSNNNLHGPIPPCFDNTTLYESYSNS 534 (776)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~~~~~~~~~ 534 (776)
.+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.......+..
T Consensus 363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~---------- 432 (567)
T 1dce_A 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---------- 432 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhc----------
Confidence 567777888888888876664 5567778888899999999 7776553111000000
Q ss_pred CCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc
Q 041867 535 SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND 614 (776)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 614 (776)
+.+.. -....|+.|+|++|.+++ +|. +..+++|+.|+|++|.
T Consensus 433 --------------------------------n~i~~----l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 433 --------------------------------NSVLK----MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp --------------------------------HHHHH----HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred --------------------------------ccccc----cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 00000 001258999999999996 565 9999999999999999
Q ss_pred ccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC-CCccccccccCcccccCCCCCCC
Q 041867 615 LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-PEWTAQFATFNESSYEGNTFLCG 690 (776)
Q Consensus 615 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~~l~~~~~~~n~~~c~ 690 (776)
++ .+|..|.++++|+.|+|++|++++ +| .+..+++|+.|++++|++++.. |..+..++.|+.+++++|+....
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 99 567899999999999999999996 66 8999999999999999999887 88899999999999999987543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=141.64 Aligned_cols=137 Identities=23% Similarity=0.280 Sum_probs=112.4
Q ss_pred CccCCEEEcccccCC-ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867 477 LSQLSHLILGHNNLE-GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555 (776)
Q Consensus 477 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (776)
.++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 467889999999887 56666778888999999999988765 44443
Q ss_pred ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCCCCEEEC
Q 041867 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVESLDL 634 (776)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L 634 (776)
+++|++|++++|.+++.+|..+..+++|+.|++++|.++++.+ ..+..+++|+.|++
T Consensus 70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 3489999999999987788888889999999999999987643 78889999999999
Q ss_pred cCCccCCcCC---ccccCCCCCCEEecccccCcccCCC
Q 041867 635 SNNKLNGKIP---HQLVELKTLEVFSVAYNNLSGEIPE 669 (776)
Q Consensus 635 s~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~p~ 669 (776)
++|++++..+ ..+..+++|+.|++++|++.. .|.
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 9999986655 478889999999999998873 443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4.6e-15 Score=138.76 Aligned_cols=133 Identities=23% Similarity=0.253 Sum_probs=113.8
Q ss_pred CCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867 480 LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH 559 (776)
Q Consensus 480 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (776)
.+.+++++|+++.... .+ .++|+.|++++|++.+..+..|..++
T Consensus 9 ~~~l~~~~~~l~~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~--------------------------------- 52 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLT--------------------------------- 52 (177)
T ss_dssp TTEEECCSSCCSSCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred CCEEEecCCCCccCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcc---------------------------------
Confidence 5678888888875432 22 36899999999999877776666544
Q ss_pred ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867 560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639 (776)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 639 (776)
+|++|++++|.+++..+..|..+++|++|++++|.++++++..|..+++|+.|++++|++
T Consensus 53 --------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 53 --------------------QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp --------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 899999999999988888889999999999999999998888899999999999999999
Q ss_pred CCcCCccccCCCCCCEEecccccCcccCC
Q 041867 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
++..+..+..+++|+.|++++|++.+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 97777778889999999999999998666
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=140.71 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=108.9
Q ss_pred CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE 560 (776)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (776)
+.+++++|.++.. |..+ .++|++|++++|+++ .+|..|..+
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l----------------------------------- 53 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNY----------------------------------- 53 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGC-----------------------------------
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcc-----------------------------------
Confidence 5677888887744 3322 257889999999887 444555443
Q ss_pred eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 640 (776)
++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+++
T Consensus 54 ------------------~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 54 ------------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp ------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ------------------cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 37999999999999888889999999999999999999999999999999999999999999
Q ss_pred CcCCccccCCCCCCEEecccccCcccCC
Q 041867 641 GKIPHQLVELKTLEVFSVAYNNLSGEIP 668 (776)
Q Consensus 641 ~~~~~~l~~l~~L~~L~l~~N~l~~~~p 668 (776)
...+..|..+++|+.|++++|++.|...
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred eeChhhhhcCccccEEEeCCCCeecCCc
Confidence 7777789999999999999999987443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=4.7e-16 Score=178.04 Aligned_cols=223 Identities=20% Similarity=0.183 Sum_probs=94.9
Q ss_pred CCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcc
Q 041867 334 KFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE 413 (776)
Q Consensus 334 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 413 (776)
+.++.|++.+|.+. ..+.. .++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~-~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~ 242 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE-DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISAN 242 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCS-CCCGG
T ss_pred CccceEEeeCCCCC-cchhh------HhhcCccCcccccC-cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChh
Confidence 44666777777665 33322 34445555554431 123333333 44555666666666666666666 34444
Q ss_pred cCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc
Q 041867 414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493 (776)
Q Consensus 414 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 493 (776)
+..+++|++|+|++|.+. .+|..|.++++|+.|+|++|.|+ .
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-------------------------------------~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-------------------------------------ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-------------------------------------CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred hcCCCCCCEEEeeCCcCc-------------------------------------ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 446666666666666555 44556677778888888888877 4
Q ss_pred chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867 494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573 (776)
Q Consensus 494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
+|..|..+++|++|+|++|.+. .+|..|..++
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~----------------------------------------------- 316 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC----------------------------------------------- 316 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-----------------------------------------------
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-----------------------------------------------
Confidence 5667777888888888888776 4455565543
Q ss_pred ccccccccceEEccCCcCCCCChhhhccCcc-CCeeecccccccccCccccCCCCCCCEEECcCC--------ccCCcCC
Q 041867 574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR-IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN--------KLNGKIP 644 (776)
Q Consensus 574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~ 644 (776)
+|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|. .|+.|++++| .+.+..+
T Consensus 317 ------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~ 384 (727)
T 4b8c_D 317 ------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTE 384 (727)
T ss_dssp ------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------------------------
T ss_pred ------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcccccc
Confidence 7888888888888777777765432 23477888888776654 4455666666 3444444
Q ss_pred ccccCCCCCCEEecccccCc
Q 041867 645 HQLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 645 ~~l~~l~~L~~L~l~~N~l~ 664 (776)
..+..+..+....+++|-+.
T Consensus 385 ~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 385 HLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------CCC
T ss_pred chhhcccccceeeeeccccc
Confidence 45555666677777777765
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.2e-15 Score=136.53 Aligned_cols=129 Identities=23% Similarity=0.265 Sum_probs=104.5
Q ss_pred CccCCEEEcccccCC-ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867 477 LSQLSHLILGHNNLE-GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555 (776)
Q Consensus 477 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (776)
.++|+.|++++|.++ +..+..+..+++|+.|++++|.+.+. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467889999999887 56677778888999999999988765 34443
Q ss_pred ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEEC
Q 041867 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDL 634 (776)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 634 (776)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus 63 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 63 ----------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 34788999999999877888888889999999999998875 3477888899999999
Q ss_pred cCCccCCcCC---ccccCCCCCCEEeccc
Q 041867 635 SNNKLNGKIP---HQLVELKTLEVFSVAY 660 (776)
Q Consensus 635 s~N~l~~~~~---~~l~~l~~L~~L~l~~ 660 (776)
++|++++..+ ..+..+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999986665 5788888999988864
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=5.6e-14 Score=149.72 Aligned_cols=310 Identities=12% Similarity=0.080 Sum_probs=195.4
Q ss_pred hhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCC
Q 041867 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFL 336 (776)
Q Consensus 257 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 336 (776)
|.++.+|+.+.+.. .++.....+|.+|++|+.+++..+ ++ .++...+..+++|+.+.+..+ +......+|.++..+
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 45566666666643 355555566666666776666543 33 344444444556666555433 332334455555433
Q ss_pred CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ 416 (776)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 416 (776)
+.... .... .+....|.++.+|+.+.+..+- ......+|.++.+|+.+.+..+ +..+...+|.+
T Consensus 143 ~~~~~--~~~~-~i~~~aF~~c~~L~~i~l~~~~------------~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 143 EITIP--EGVT-VIGDEAFATCESLEYVSLPDSM------------ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp EEECC--TTCC-EECTTTTTTCTTCCEEECCTTC------------CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred ccccC--cccc-ccchhhhcccCCCcEEecCCcc------------ceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 32222 2222 4555667777777777754332 1234556777777777777665 44456667777
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchh
Q 041867 417 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV 496 (776)
Q Consensus 417 l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 496 (776)
+..|+.+.+..+... .....+....|+.+.+.... ..+...+|.++..++.+.+..+... ....
T Consensus 207 ~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--------------~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~ 270 (394)
T 4fs7_A 207 CILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--------------TELGKSVFYGCTDLESISIQNNKLR-IGGS 270 (394)
T ss_dssp CTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--------------CEECSSTTTTCSSCCEEEECCTTCE-ECSC
T ss_pred ccccceeecCCCceE-eehhhcccCCCceEEECCCc--------------eecccccccccccceeEEcCCCcce-eecc
Confidence 777777777665432 23334445666766553321 1234456777888888888766433 5566
Q ss_pred hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccc
Q 041867 497 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576 (776)
Q Consensus 497 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (776)
.|..+..++.+....+.+ ...+|..+
T Consensus 271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~--------------------------------------------------- 296 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIV---PEKTFYGC--------------------------------------------------- 296 (394)
T ss_dssp TTTTCTTCCEEEECSSEE---CTTTTTTC---------------------------------------------------
T ss_pred ccccccccceeccCceee---cccccccc---------------------------------------------------
Confidence 777788888877765542 22334332
Q ss_pred cccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656 (776)
Q Consensus 577 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 656 (776)
.+|+.+.+..+ +..+...+|.++++|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+
T Consensus 297 --~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 297 --SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp --TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred --ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 36888888655 55566788999999999999754 77788889999999999999877 776777889999999999
Q ss_pred ecccc
Q 041867 657 SVAYN 661 (776)
Q Consensus 657 ~l~~N 661 (776)
++..+
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 98765
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.1e-13 Score=147.60 Aligned_cols=155 Identities=10% Similarity=0.023 Sum_probs=103.0
Q ss_pred chhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCc
Q 041867 22 LQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRI 101 (776)
Q Consensus 22 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 101 (776)
..+ |.++++|+.+.|..+ ++ .+...+|.+|.+|+.+++..+ +. .+....+.++.+|+.+.+..+- . .+
T Consensus 64 ~~A-F~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~---l~-~I~~~aF~~c~~L~~i~~p~~l-~----~i 131 (394)
T 4fs7_A 64 YAA-FQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS---VK-MIGRCTFSGCYALKSILLPLML-K----SI 131 (394)
T ss_dssp TTT-TTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT---CC-EECTTTTTTCTTCCCCCCCTTC-C----EE
T ss_pred HHH-hhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC---ce-EccchhhcccccchhhcccCce-e----ee
Confidence 344 788888999998743 54 555568899999999988765 12 2233333378888887776542 2 34
Q ss_pred CCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCccccc
Q 041867 102 LDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLF 181 (776)
Q Consensus 102 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 181 (776)
...+|..+..++...... ...+...+|.++++|+.+.+.++. . .++...|..+.+|+.+++..+ +. .+...++.
T Consensus 132 ~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~ 205 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA 205 (394)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred cceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence 455777765444333322 333456778889999999987654 3 577778888889998888766 33 44556677
Q ss_pred CCCCCcEEEcccC
Q 041867 182 NHSRLKTFYADNN 194 (776)
Q Consensus 182 ~l~~L~~L~l~~n 194 (776)
++..|+.+.+..+
T Consensus 206 ~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 206 ECILLENMEFPNS 218 (394)
T ss_dssp TCTTCCBCCCCTT
T ss_pred cccccceeecCCC
Confidence 7777776655443
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=9.4e-15 Score=135.38 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCcEEECCCCCCC-CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867 5 TNLEYLTLHGSSLH-ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS 83 (776)
Q Consensus 5 ~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~ 83 (776)
++|++|+|++|++. +.++.. +..+++|++|++++|.+.+. ..+..+++|++|++++| .+.+..+..+. .+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~-~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN--RIFGGLDMLAE-KLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC--CCCSCCCHHHH-HCTT
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC--cCchHHHHHHh-hCCC
Confidence 44555555555554 233333 44455555555555555432 13455555555555555 22232333333 4555
Q ss_pred ccEEEccCCCCCCCCCCcCC-cCCCCCCCCCEEEccCCccccccC---ccccCCCCCCEEeCCCCcCc
Q 041867 84 LKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGSNDLRGSLP---WCMTNLTSLRILDVSSNQLT 147 (776)
Q Consensus 84 L~~L~L~~n~i~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 147 (776)
|++|++++|.+++ ++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 97 L~~L~Ls~N~l~~----~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 97 LTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCEEECBSSSCCS----SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCEEeccCCccCc----chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555555543 211 234444555555555555543322 24444555555555555444
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=9.2e-16 Score=175.64 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=75.4
Q ss_pred cccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE
Q 041867 319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY 398 (776)
Q Consensus 319 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~ 398 (776)
.|.+. ..+..+..++.|+.|+|++|.+. .+|..++ .+++|+.|+|++|.++ .+|..|..+++|++
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCE
T ss_pred cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCCCE
Confidence 34444 45667788888888888888887 8888777 5888888885555543 56777888888888
Q ss_pred EeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCc
Q 041867 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 451 (776)
Q Consensus 399 L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 451 (776)
|+|++|.++ .+|..|..+++|++|+|++|.+..++.....+.+|++|++++|
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 888888888 5677788888888888888877633222112444444433333
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.2e-14 Score=134.59 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=95.1
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
..+.+++++|.++. +|..+. ++|+.|+|++|.|+++.|..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46789999999984 555553 789999999999998888889999999999999999998877788889999999999
Q ss_pred cccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
+|+|++..+..+..+.+++.+++++|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777778888999999999999999986
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2e-14 Score=130.17 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCCcEEECCCCCCC-CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCC
Q 041867 4 FTNLEYLTLHGSSLH-ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMP 82 (776)
Q Consensus 4 l~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~ 82 (776)
.++|++|++++|.++ +.++.. +..+++|++|++++|.+.+. ..+..+++|++|++++| .+.+..+..+. .++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLEVLAE-KCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTHHHHH-HCT
T ss_pred CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHHHHhh-hCC
Confidence 456666777766665 344443 56666677777766666543 24666666666666666 33343444444 566
Q ss_pred CccEEEccCCCCCCCCCCcC-CcCCCCCCCCCEEEccCCccccccC---ccccCCCCCCEEeCC
Q 041867 83 SLKYLSLSYSTLGTNSSRIL-DRGLCSPVHLQELYIGSNDLRGSLP---WCMTNLTSLRILDVS 142 (776)
Q Consensus 83 ~L~~L~L~~n~i~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 142 (776)
+|++|++++|.+++ ++ ...+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 89 ~L~~L~ls~N~i~~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCS----HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCC----hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666666654 21 1245556666666666666654433 345566666666554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=3.8e-14 Score=131.50 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred cceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEeccc
Q 041867 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660 (776)
Q Consensus 581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 660 (776)
-+.+++++|.+. .+|..+. ++|+.|+|++|.++++.|..|.++++|+.|+|++|+|+++.+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888886 4555554 7888888888888888888888888888888888888876666778888888888888
Q ss_pred ccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867 661 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692 (776)
Q Consensus 661 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 692 (776)
|+|++..+..+..+++++.+++++|+|.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88887666667788888888888888888875
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.1e-14 Score=133.99 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=101.5
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (776)
.+..+++|+.|++++|.++.. +. +..+ ++|+.|++++|++++. ..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------------------------- 62 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPL--------------------------- 62 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCC---------------------------
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccccc---------------------------
Confidence 356678888888888888854 33 4444 4888888888888754 33433
Q ss_pred CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCCCC
Q 041867 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVE 630 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 630 (776)
+++|++|++++|.+++..+..|..+++|+.|++++|.++.+.+ ..+..+++|+
T Consensus 63 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 63 --------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116 (176)
T ss_dssp --------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred --------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence 3478888999998887666667888899999999998875443 3778888899
Q ss_pred EEECcCCccCCcCCc----cccCCCCCCEEecccccCc
Q 041867 631 SLDLSNNKLNGKIPH----QLVELKTLEVFSVAYNNLS 664 (776)
Q Consensus 631 ~L~Ls~N~l~~~~~~----~l~~l~~L~~L~l~~N~l~ 664 (776)
.|++++|+++ .+|. .+..+++|+.||+++|.+.
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999887 4455 3778888999999888776
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.8e-13 Score=126.50 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=84.6
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
.+++|+|++|.+++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred cccCcccCC
Q 041867 660 YNNLSGEIP 668 (776)
Q Consensus 660 ~N~l~~~~p 668 (776)
+|++++..+
T Consensus 111 ~N~~~c~c~ 119 (170)
T 3g39_A 111 NNPWDCACS 119 (170)
T ss_dssp SSCBCTTBG
T ss_pred CCCCCCCch
Confidence 999997665
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=7e-14 Score=130.45 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=111.0
Q ss_pred hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccc
Q 041867 497 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576 (776)
Q Consensus 497 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (776)
.+..+++|+.|++++|++... +. +..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~---------------------------------------------------- 39 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGA---------------------------------------------------- 39 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGG----------------------------------------------------
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhh----------------------------------------------------
Confidence 467788999999999999854 32 211
Q ss_pred cccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCc--cccCCCCCC
Q 041867 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLE 654 (776)
Q Consensus 577 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~ 654 (776)
..++|+.|++++|.+++. ..+..+++|+.|++++|.++++++..|..+++|+.|++++|+++ .+|. .+..+++|+
T Consensus 40 ~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 40 TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 123799999999999965 68999999999999999999887777799999999999999997 4555 788999999
Q ss_pred EEecccccCcccCCCc----cccccccCcccccCCC
Q 041867 655 VFSVAYNNLSGEIPEW----TAQFATFNESSYEGNT 686 (776)
Q Consensus 655 ~L~l~~N~l~~~~p~~----~~~~~~l~~~~~~~n~ 686 (776)
.|++++|+++ ..|.. +..++.++.+++++|+
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999998 45653 7788899999988874
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.1e-13 Score=123.86 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=83.5
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
.|+.|+|++|.+++..|..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 79999999999999999999999999999999999999988889999999999999999997777779999999999999
Q ss_pred cccCcccCC
Q 041867 660 YNNLSGEIP 668 (776)
Q Consensus 660 ~N~l~~~~p 668 (776)
+|++.+..+
T Consensus 114 ~N~~~c~~~ 122 (174)
T 2r9u_A 114 NNPWDCECR 122 (174)
T ss_dssp SSCBCTTBG
T ss_pred CCCcccccc
Confidence 999997554
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=7e-12 Score=133.44 Aligned_cols=327 Identities=11% Similarity=0.099 Sum_probs=178.9
Q ss_pred hhcCC-CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceecc---CcccCChhhhccCcccceeecccccCccCCCccCCC
Q 041867 257 LENNT-KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN---FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN 332 (776)
Q Consensus 257 ~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 332 (776)
|.++. .|+.+.+..+ ++.....+|.+|.+|+.+.+..|. ++ .+....+..+.+|+.+.+..+ ++.....+|..
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 34553 4777777543 666667778888888888887653 33 344444444667777666544 44455567788
Q ss_pred CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV 412 (776)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 412 (776)
+.+|+.+.+..+ +. .+....|.++.+|+.+.+..+ +..+...+|.. .+|+.+.+..+-.. ....
T Consensus 136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~------------~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~ 199 (394)
T 4gt6_A 136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS------------VTAIEERAFTG-TALTQIHIPAKVTR-IGTN 199 (394)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT------------CCEECTTTTTT-CCCSEEEECTTCCE-ECTT
T ss_pred hcccccccccce-ee-eecccceecccccccccccce------------eeEeccccccc-cceeEEEECCcccc-cccc
Confidence 888888888644 44 677777778888888876543 22233445543 56778877665433 5566
Q ss_pred ccCCCCCCcEEEccccccCCCCCCCCCCCcc-cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCC
Q 041867 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491 (776)
Q Consensus 413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 491 (776)
+|..+.++.......+.........+..... .................+ .+.+..+...+|.++..|+.+.+.++..
T Consensus 200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~~~~- 277 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPDSVV- 277 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCTTCC-
T ss_pred hhhhccccceecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEecccccc-
Confidence 7778888887776655443222211110000 000000000000000000 0122234445677777777777754432
Q ss_pred ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEE
Q 041867 492 GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY 571 (776)
Q Consensus 492 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
.+...+|.++++|+.+.+. +.+..+...+|.++.
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~--------------------------------------------- 311 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI--------------------------------------------- 311 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT---------------------------------------------
T ss_pred eecCcccccccccccccCC-CcccccCceeecCCC---------------------------------------------
Confidence 3455666777777777775 334445555555543
Q ss_pred EeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCC
Q 041867 572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 651 (776)
Q Consensus 572 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 651 (776)
+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+....
T Consensus 312 --------~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~ 378 (394)
T 4gt6_A 312 --------SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS 378 (394)
T ss_dssp --------TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC
T ss_pred --------CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC
Confidence 5666666543 44455566677777777776543 555666667777777777776665431 3455556
Q ss_pred CCCEEecccccC
Q 041867 652 TLEVFSVAYNNL 663 (776)
Q Consensus 652 ~L~~L~l~~N~l 663 (776)
.|+.+.+..|.+
T Consensus 379 ~L~~i~i~~~~~ 390 (394)
T 4gt6_A 379 GLQNLPVAPGSI 390 (394)
T ss_dssp CC----------
T ss_pred CCCEEEeCCCCE
Confidence 666666655543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.1e-15 Score=143.95 Aligned_cols=86 Identities=26% Similarity=0.227 Sum_probs=41.9
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCC-ccccCCCCCCEEec
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSV 658 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l 658 (776)
+|++|++++|.++ .+|..+..+++|+.|++++|+++++ | .+..+++|+.|++++|+++...+ +.+..+++|+.|++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 4555555555554 3344444445555555555555543 2 34445555555555555543221 24445555555555
Q ss_pred ccccCcccCC
Q 041867 659 AYNNLSGEIP 668 (776)
Q Consensus 659 ~~N~l~~~~p 668 (776)
++|++++.+|
T Consensus 148 ~~N~l~~~~~ 157 (198)
T 1ds9_A 148 AGNPLYNDYK 157 (198)
T ss_dssp CSCHHHHHHH
T ss_pred cCCccccccc
Confidence 5555544433
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=7.7e-15 Score=139.96 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=113.4
Q ss_pred CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867 470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES 549 (776)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (776)
+|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.. +|..+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~------------------------- 91 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAV------------------------- 91 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECS-CSSHHHH-------------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccc-ccchhhc-------------------------
Confidence 445889999999999999999974 4 88899999999999999983 3433322
Q ss_pred CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCC
Q 041867 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKH 628 (776)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 628 (776)
+++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++
T Consensus 92 ----------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 92 ----------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141 (198)
T ss_dssp ----------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred ----------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC
Confidence 3489999999999996 45 69999999999999999997654 57899999
Q ss_pred CCEEECcCCccCCcCCcc----------ccCCCCCCEEecccccCcc
Q 041867 629 VESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLSG 665 (776)
Q Consensus 629 L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~~ 665 (776)
|+.|++++|++.+..|.. +..+++|+.|| +|+++.
T Consensus 142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999999998776543 78899999987 787764
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=2.4e-11 Score=129.23 Aligned_cols=331 Identities=8% Similarity=0.045 Sum_probs=195.3
Q ss_pred CcCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeeccccc---CccCCCccCCCCCCCCEEEccCCcCCC
Q 041867 273 LGGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNA---LDGSIPSSLGNMKFLQILDLSNNHLTG 348 (776)
Q Consensus 273 ~~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~ 348 (776)
++.+...+|.+++ .|+.+.+..+ ++ .+....+..+++|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~- 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT- 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence 3444566777774 5888888653 44 4445455557778887776653 44444567777777777766544 44
Q ss_pred cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEcccc
Q 041867 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 428 (776)
Q Consensus 349 ~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n 428 (776)
.++...|.++.+|+.+.+..+- ......+|..+.+|+.+.+.++ +..+...+|.+ ..|+.+.+..+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred eehhhhhhhhccccccccccee------------eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence 6667777777777777754332 2234556777777777777654 33345555644 46777777654
Q ss_pred ccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEE
Q 041867 429 NISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLL 507 (776)
Q Consensus 429 ~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 507 (776)
-.. .....|. +..+................-...+.........+.....+..+.+. +.++.+...+|.++..|+.+
T Consensus 193 ~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i 270 (394)
T 4gt6_A 193 VTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASV 270 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEE
T ss_pred ccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEE
Confidence 322 3333343 55666555443322210000000000000000011122334444443 23344555678888888888
Q ss_pred eCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEcc
Q 041867 508 DLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS 587 (776)
Q Consensus 508 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 587 (776)
.+.++.. .+...+|..+. .|+.+.+.
T Consensus 271 ~lp~~~~-~I~~~aF~~c~-----------------------------------------------------~L~~i~l~ 296 (394)
T 4gt6_A 271 KMPDSVV-SIGTGAFMNCP-----------------------------------------------------ALQDIEFS 296 (394)
T ss_dssp ECCTTCC-EECTTTTTTCT-----------------------------------------------------TCCEEECC
T ss_pred ecccccc-eecCccccccc-----------------------------------------------------ccccccCC
Confidence 8865533 34455555543 78888886
Q ss_pred CCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867 588 CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 667 (776)
Q Consensus 588 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 667 (776)
+.+..+...+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.+|....
T Consensus 297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-- 371 (394)
T 4gt6_A 297 -SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-- 371 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred -CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence 4566567788999999999999865 77777888999999999999755 666777889999999999998876542
Q ss_pred CCccccccccCccccc
Q 041867 668 PEWTAQFATFNESSYE 683 (776)
Q Consensus 668 p~~~~~~~~l~~~~~~ 683 (776)
..+.....|+.+.+.
T Consensus 372 -~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVA 386 (394)
T ss_dssp -HTCBCCCCC------
T ss_pred -hhhhccCCCCEEEeC
Confidence 123334445555443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.2e-12 Score=136.98 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=90.1
Q ss_pred ceEEccCC-cCCCCChhhhccCccCCeeeccc-ccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 582 SGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSH-NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 582 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
..++++++ .++ .+|. +..+++|+.|+|++ |.|+++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4666 88888899999986 88888888888889999999999999988888888888999999999
Q ss_pred cccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867 660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 693 (776)
Q Consensus 660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 693 (776)
+|+|++..+..+..+. |+.+++.+|++.|+|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999876666555554 88888899999998864
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.7e-12 Score=134.32 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=95.3
Q ss_pred ccceEEccC-CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867 580 LLSGLDLSC-NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658 (776)
Q Consensus 580 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 658 (776)
+|+.|+|++ |.+.++.+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..|..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 799999996 999998889999999999999999999999999999999999999999999987777777766 999999
Q ss_pred ccccCcccCC-CccccccccCcccccCCCCCCCCCC
Q 041867 659 AYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLPL 693 (776)
Q Consensus 659 ~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~~ 693 (776)
++|++.+... .++..+.......++.+.+.|..+.
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999997544 2344444444455666778886643
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.5e-13 Score=144.04 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCCEEeCCCCcCccccCC---CcCC-CCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcC
Q 041867 30 PSLKNLSISYCEVNGVVHG---QGFP-HFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG 105 (776)
Q Consensus 30 ~~L~~L~Ls~n~~~~~~~~---~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 105 (776)
++|++|+|++|.+...... ..+. ..++|++|++++| .+.......+...+++|++|+|++|.+++.+.......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566666666655422111 0111 2246666666666 33333333333344566666666666654221111111
Q ss_pred C-CCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc----CCcccccCCCCCCEEeccCCcccccc-
Q 041867 106 L-CSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS----ISSSPLIHLTSIEKLYLSNNHFQIPI- 175 (776)
Q Consensus 106 l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~~~~- 175 (776)
+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+. +.. .+...++|++|++++|.++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHH
Confidence 1 2345666666666666532 233345566666666666666521 112 3445556666666666665210
Q ss_pred --CcccccCCCCCcEEEcccCcccc
Q 041867 176 --SLEPLFNHSRLKTFYADNNELNA 198 (776)
Q Consensus 176 --~~~~l~~l~~L~~L~l~~n~~~~ 198 (776)
-...+...++|++|++++|.+..
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 01123345666677777666654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=2.7e-12 Score=134.47 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCCcEEECCCCCCCCccchh---ccC-CCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHH--
Q 041867 5 TNLEYLTLHGSSLHISLLQS---IAS-IFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVIS-- 78 (776)
Q Consensus 5 ~~L~~L~L~~n~~~~~~~~~---~~~-~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~-- 78 (776)
++|++|+|++|.++...... .+. ..++|++|+|++|.+...........+++|++|++++| .+.......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHH
Confidence 56777777777766432222 011 23577777777777653222111223566777777777 44433333332
Q ss_pred --hcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc---
Q 041867 79 --ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS--- 149 (776)
Q Consensus 79 --~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 149 (776)
...++|++|+|++|.+++.+.......+..+++|++|+|++|.++.. ++..+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 23566777777777765422222223445566777777777777643 244556667777777777776532
Q ss_pred -CCcccccCCCCCCEEeccCCccc
Q 041867 150 -ISSSPLIHLTSIEKLYLSNNHFQ 172 (776)
Q Consensus 150 -i~~~~~~~l~~L~~L~L~~n~l~ 172 (776)
+.. .+...++|++|++++|.++
T Consensus 230 ~l~~-~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALAR-AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHH-HHHHCSSCCEEECTTSSCC
T ss_pred HHHH-HHHhCCCCCEEeccCCCCC
Confidence 111 3445567777777777765
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=6.1e-09 Score=110.18 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=32.7
Q ss_pred CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867 594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 659 (776)
Q Consensus 594 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 659 (776)
+...+|.++++|+.+.+.++.++.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+.+.
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 33344555555555555555555454555555555555555433 433444455555555555554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=2.6e-08 Score=105.23 Aligned_cols=155 Identities=10% Similarity=0.051 Sum_probs=114.3
Q ss_pred hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG 552 (776)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (776)
.+..+..+..+.+.... .......+..+.+|+.+.+..+ +..+...+|..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-------------------------- 240 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK-------------------------- 240 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS--------------------------
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCc--------------------------
Confidence 34455566666554432 2344556677778888877654 3334444554433
Q ss_pred CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867 553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 632 (776)
.|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+
T Consensus 241 ---------------------------~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 241 ---------------------------ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp ---------------------------SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ---------------------------cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 6888888765 55567788999999999999764 666778899999999999
Q ss_pred ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCC
Q 041867 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 685 (776)
Q Consensus 633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n 685 (776)
++.++.++.+.+.+|.++.+|+.+++..+ ++..-..+|..+..|+.+.+..+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99999998888889999999999999765 66566677888888888877543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=2e-08 Score=104.01 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCCCCcEEECCCCCCC---------CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcch
Q 041867 3 NFTNLEYLTLHGSSLH---------ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNF 73 (776)
Q Consensus 3 ~l~~L~~L~L~~n~~~---------~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 73 (776)
++++|+.|.+...... +.+. .++..+|+|+.|+|++|.-. .++ .+ .+++|++|++..| .+....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~--~~-~~~~L~~L~L~~~--~l~~~~ 209 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIG--KK-PRPNLKSLEIISG--GLPDSV 209 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCC--SC-BCTTCSEEEEECS--BCCHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eec--cc-cCCCCcEEEEecC--CCChHH
Confidence 3578888888654321 1122 22567788888888776311 222 23 3778888888877 444444
Q ss_pred hHHHH-hcCCCccEEEccC--CCCCCC-CCCcCCcCC--CCCCCCCEEEccCCccccccCcccc---CCCCCCEEeCCCC
Q 041867 74 LQVIS-ESMPSLKYLSLSY--STLGTN-SSRILDRGL--CSPVHLQELYIGSNDLRGSLPWCMT---NLTSLRILDVSSN 144 (776)
Q Consensus 74 ~~~~~-~~l~~L~~L~L~~--n~i~~~-~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n 144 (776)
...+. ..+|+|++|+|+. +...+. +..-....+ ..+++|++|+|++|.+....+..+. .+++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 44443 2578888888753 111110 000000112 2467788888877777643332232 4667777777777
Q ss_pred cCccc----CCcccccCCCCCCEEeccCCccc
Q 041867 145 QLTGS----ISSSPLIHLTSIEKLYLSNNHFQ 172 (776)
Q Consensus 145 ~l~~~----i~~~~~~~l~~L~~L~L~~n~l~ 172 (776)
.+.+. +.. .+.++++|+.|+++.|.++
T Consensus 290 ~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLLLD-HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred CCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence 76642 222 2345667777777777655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=8e-09 Score=106.95 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=41.9
Q ss_pred ccccceEEccCCcCCCCChhhhc---cCccCCeeecccccccccC----ccccCCCCCCCEEECcCCccCCcCCccccC-
Q 041867 578 LSLLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGLI----PSTFSNLKHVESLDLSNNKLNGKIPHQLVE- 649 (776)
Q Consensus 578 ~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~- 649 (776)
+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|+...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34677777776666533222332 3556666666666665532 222233566666666666655322222221
Q ss_pred CCCCCEEeccccc
Q 041867 650 LKTLEVFSVAYNN 662 (776)
Q Consensus 650 l~~L~~L~l~~N~ 662 (776)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2445555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=2.4e-08 Score=93.18 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=5.6
Q ss_pred CCCcEEEcccCcc
Q 041867 184 SRLKTFYADNNEL 196 (776)
Q Consensus 184 ~~L~~L~l~~n~~ 196 (776)
+.|++|++++|.+
T Consensus 151 ~~L~~L~L~~n~i 163 (185)
T 1io0_A 151 TTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCCSSH
T ss_pred CCcCEEeccCCCC
Confidence 3444444444443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=6e-08 Score=90.46 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=53.9
Q ss_pred cCCCCCCCEEeCCCC-cCccc----cCCCcCCCCCCCcEEeCCCCccccCc--chhHHHHhcCCCccEEEccCCCCCCCC
Q 041867 26 ASIFPSLKNLSISYC-EVNGV----VHGQGFPHFKSLEHLGMMSTRIALNT--NFLQVISESMPSLKYLSLSYSTLGTNS 98 (776)
Q Consensus 26 ~~~~~~L~~L~Ls~n-~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~ 98 (776)
+...+.|++|+|++| .+... +. ..+...++|++|++++|.|...+ .+...+. ..+.|++|+|++|.|.+.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence 445566666666666 55321 11 13344555666666666322111 1122222 3455555555555555433
Q ss_pred CCcCCcCCCCCCCCCEEEc--cCCccccc----cCccccCCCCCCEEeCCCCcC
Q 041867 99 SRILDRGLCSPVHLQELYI--GSNDLRGS----LPWCMTNLTSLRILDVSSNQL 146 (776)
Q Consensus 99 ~~~~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 146 (776)
.......+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2223334444455555555 44555432 122333344455555555444
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.26 E-value=9.1e-07 Score=76.47 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred eeeccccccc-ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867 607 TLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665 (776)
Q Consensus 607 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 665 (776)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 12233332 256666666666665555566666666666666666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1e-06 Score=86.18 Aligned_cols=62 Identities=29% Similarity=0.324 Sum_probs=27.3
Q ss_pred cccceEEccCCcCCCC--ChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEECcCCccCC
Q 041867 579 SLLSGLDLSCNKLIGP--IPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG 641 (776)
Q Consensus 579 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~ 641 (776)
+.|++|+|++|.|+++ +|..+..+++|+.|+|++|+|++. ..+.+..+ +|++|+|++|++.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 3455555555555442 223444455555555555555443 01112222 44455555554443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2e-07 Score=91.18 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=71.2
Q ss_pred ccce--EEccCCcCC---CCChhhhccCccCCeeecccccccccC--ccccCCCCCCCEEECcCCccCCcCCccccCCC-
Q 041867 580 LLSG--LDLSCNKLI---GPIPPQIGNLTRIQTLNLSHNDLIGLI--PSTFSNLKHVESLDLSNNKLNGKIPHQLVELK- 651 (776)
Q Consensus 580 ~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~- 651 (776)
.|.. ++++.|... ...+....++++|+.|+|++|+|+++. +..+..+++|+.|+|++|+|++. +.+..+.
T Consensus 142 ~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred chhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 4554 677777533 222223357899999999999999853 46667899999999999999965 3344444
Q ss_pred -CCCEEecccccCcccCCC-------ccccccccCccc
Q 041867 652 -TLEVFSVAYNNLSGEIPE-------WTAQFATFNESS 681 (776)
Q Consensus 652 -~L~~L~l~~N~l~~~~p~-------~~~~~~~l~~~~ 681 (776)
+|+.|++++|++++..|. .+..+++|..++
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 899999999999987663 234455555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.2e-06 Score=77.31 Aligned_cols=87 Identities=8% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcC----CCccEEEccCCC-CCCCCCCcCCc
Q 041867 30 PSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESM----PSLKYLSLSYST-LGTNSSRILDR 104 (776)
Q Consensus 30 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~ 104 (776)
..|++||+++|.++..--. .+.++++|++|+|++|. .+++.....+. .+ ++|++|+|++|. +++.+. .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~-~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl----~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCH-YIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGI----I 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCT-TCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHH----H
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCC-ccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHH----H
Confidence 4699999999998644333 57889999999999994 46666666776 43 579999999985 766332 2
Q ss_pred CCCCCCCCCEEEccCCc-cc
Q 041867 105 GLCSPVHLQELYIGSND-LR 123 (776)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~-l~ 123 (776)
.+.++++|++|++++|. ++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 46678999999999985 44
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=2.7e-06 Score=76.79 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=67.5
Q ss_pred ccceEEccCCcCCCCChhhhccCccCCeeeccccc-ccccCccccCCC----CCCCEEECcCCc-cCCcCCccccCCCCC
Q 041867 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNL----KHVESLDLSNNK-LNGKIPHQLVELKTL 653 (776)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L 653 (776)
.|++||++++.++..--..+.++++|+.|+|++|. +++..-..+..+ ++|++|+|++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 69999999999886666778899999999999995 776544556654 479999999985 775444567788999
Q ss_pred CEEeccccc
Q 041867 654 EVFSVAYNN 662 (776)
Q Consensus 654 ~~L~l~~N~ 662 (776)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=9.7e-05 Score=68.00 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred cCCCCCCCEEeCCCC-cCcccc---CCCcCCCCCCCcEEeCCCCccccCc--chhHHHHhcCCCccEEEccCCCCCCCCC
Q 041867 26 ASIFPSLKNLSISYC-EVNGVV---HGQGFPHFKSLEHLGMMSTRIALNT--NFLQVISESMPSLKYLSLSYSTLGTNSS 99 (776)
Q Consensus 26 ~~~~~~L~~L~Ls~n-~~~~~~---~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 99 (776)
..+-+.|++|+|+++ .|...- -..++..-..|+.|+|++|+|.-.+ .+.+.+. .-+.|++|+|++|.|.+.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHH
Confidence 456688999999885 664210 0113455567777777777332111 1223333 44677777777777776555
Q ss_pred CcCCcCCCCCCCCCEEEccCCcc---ccc----cCccccCCCCCCEEeCCCCc
Q 041867 100 RILDRGLCSPVHLQELYIGSNDL---RGS----LPWCMTNLTSLRILDVSSNQ 145 (776)
Q Consensus 100 ~~~~~~l~~l~~L~~L~Ls~n~l---~~~----~~~~~~~l~~L~~L~L~~n~ 145 (776)
....+++...+.|++|+|++|.. ... +.+.+..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 55555666666677777765432 211 22334445566666665554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=4.2e-05 Score=70.44 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=59.9
Q ss_pred cCCCccEEEccCC-CCCCCCCCcCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc----C
Q 041867 80 SMPSLKYLSLSYS-TLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS----I 150 (776)
Q Consensus 80 ~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----i 150 (776)
+-+.|++|+|+++ .|.+.+......++.....|++|+|++|+|... +.+.+..-+.|++|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456666666654 554433333334555555666666666666532 223333455666666666666432 1
Q ss_pred CcccccCCCCCCEEeccCCc---cccc---cCcccccCCCCCcEEEcccCcc
Q 041867 151 SSSPLIHLTSIEKLYLSNNH---FQIP---ISLEPLFNHSRLKTFYADNNEL 196 (776)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~---l~~~---~~~~~l~~l~~L~~L~l~~n~~ 196 (776)
.. .+...+.|++|+|++|. +... .-...+...+.|+.|+++.+.+
T Consensus 119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 11 34455566666666442 2210 0112345556677777766554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00058 Score=58.71 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=56.0
Q ss_pred CEEECcCCccC-CcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC--------------
Q 041867 630 ESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------- 694 (776)
Q Consensus 630 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~-------------- 694 (776)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+..++.+++++|||.|+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~ 88 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP 88 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence 37788888876 34554432 36888888888888776777777888888888888888888641
Q ss_pred ----CCCCCCCCCCCCCCCCC
Q 041867 695 ----ICRSPATMSEASIGNER 711 (776)
Q Consensus 695 ----~c~~~~~~~~~~~~~~~ 711 (776)
.|.+|....|..+....
T Consensus 89 ~~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 89 YRDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp GTTCBCCBSTTTTTCBGGGCC
T ss_pred ccCcEeCcChHHcCCCcccCC
Confidence 57777766666544433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.25 E-value=8.5 Score=30.52 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=32.7
Q ss_pred cCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEcccc
Q 041867 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 428 (776)
Q Consensus 381 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n 428 (776)
.++.+...+|.+|++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445556667777777777777665 44466677888888888877654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.07 E-value=10 Score=30.12 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=17.8
Q ss_pred ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEecc
Q 041867 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLS 167 (776)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 167 (776)
+...+|.+|.+|+.+.+..+ ++ .|...+|.++.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 33344444444444444433 22 3333344444444444443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.18 E-value=22 Score=22.29 Aligned_cols=15 Identities=0% Similarity=0.069 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHHH
Q 041867 723 ITFTTSYVIVIFAIV 737 (776)
Q Consensus 723 ~~~~~~~~~~~~~~~ 737 (776)
.+++++.++++.+++
T Consensus 14 AGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 14 VAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 344444444333333
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.19 E-value=37 Score=22.01 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 041867 725 FTTSYVIVI 733 (776)
Q Consensus 725 ~~~~~~~~~ 733 (776)
++++++.++
T Consensus 14 Ia~~vVGvl 22 (44)
T 2jwa_A 14 IISAVVGIL 22 (44)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333444433
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=37.11 E-value=39 Score=20.11 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 041867 725 FTTSYVIVIFAIVIIL 740 (776)
Q Consensus 725 ~~~~~~~~~~~~~~~~ 740 (776)
++++.++++.++...+
T Consensus 12 ~i~gl~vif~~lg~tf 27 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTF 27 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcee
Confidence 3344444444444433
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=31.87 E-value=32 Score=24.26 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 041867 724 TFTTSYVIVIFAIVIIL 740 (776)
Q Consensus 724 ~~~~~~~~~~~~~~~~~ 740 (776)
.++.++..++++..+++
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33333333333333333
Done!