BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041871
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 36/49 (73%)
Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
G+ECAVCL++ ED E R LP+C H FH C+D WL HS+CPLCRL V
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 61.6 bits (148), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
GLEC VC + E +R LP C H FH SCI WLE+H SCP+CR + ++
Sbjct: 15 GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 86 LPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
LP +RF+ + C VC+ FE ++LR+LP C H FH C+D+WL+ + +CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154
+C +CLS E+ E +R LP C H FH C+DQWL + CP+CR+ + A+ P+
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
CAVCL F+ + L + P CKHAFH C+ +WLE CPLC + V
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 80 KAVIESLPFFRFSSLKGS-KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH 138
K I++LP + G+ Q + C +C S++ ++ LP C H FH C+ WL+K
Sbjct: 19 KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKS 77
Query: 139 SSCPLCR 145
+CP+CR
Sbjct: 78 GTCPVCR 84
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150
EC +C+ D +LP C H+F CID+W ++H +CP+CRL++
Sbjct: 17 ECCICMDGRADL----ILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
C +CL ED + C HAF CI +W+ ++ +CPLC++ V + TI
Sbjct: 8 CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTI 57
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
C C ++ + + + + +C H+FH C+ W+++++ CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSN 160
L+C +C F + L C H+F CI++W+++ CP+CR + ++ ++ N
Sbjct: 54 LQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL-VLDN 108
Query: 161 SMRFMFNN 168
+ M NN
Sbjct: 109 XINKMVNN 116
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSN 160
L+C +C F + L C H+F CI++W+++ CP+CR + ++ ++ N
Sbjct: 65 LQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL-VLDN 119
Query: 161 SMRFMFNN 168
+ M NN
Sbjct: 120 CINKMVNN 127
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSN 160
L+C +C F + L C H+F CI++W+++ CP+CR + ++ ++ N
Sbjct: 54 LQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL-VLDN 108
Query: 161 SMRFMFNN 168
+ M NN
Sbjct: 109 CINKMVNN 116
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLC 144
GS C +CL + ++ + C H H +C ++ L++ CPLC
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
L C +C F D + +C H+F +CI ++LE CP+C ++V+ P +
Sbjct: 12 LMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
L C +C F D + +C H+F +CI ++LE CP+C ++V+ P +
Sbjct: 16 LMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
L C +C F D + +C H+F +CI ++LE CP+C ++V+ P +
Sbjct: 16 LMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 122 CKHAFHISCIDQWLEKHSSCPL 143
C HAFH CI +WL+ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P I
Sbjct: 29 CKICAENDKDVKI----EPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPII 78
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLC 144
C +CL + ++ + C H H +C ++ L++ CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 27 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 76
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
L C +C FE I ++P+C H + CI ++L + CP C + V D
Sbjct: 23 LRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 30 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 79
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P I
Sbjct: 341 CKICAENDKDVKI----EPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPII 390
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 337 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 386
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 337 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 386
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 335 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDPTI 155
C +C +D +I C H SC+ W E CP CR ++ +P +
Sbjct: 335 CKICAENDKDVKI----EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.0 bits (79), Expect = 0.087, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 101 LECAVCLSKFEDTEIL---RLL--PKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
+ C +C+ + +EI+ RL+ +C H F C+ L+ ++CP CR K+N
Sbjct: 8 VSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 35.0 bits (79), Expect = 0.087, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 101 LECAVCLSKFEDTEIL---RLL--PKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
+ C +C+ + +EI+ RL+ +C H F C+ L+ ++CP CR K+N
Sbjct: 73 VSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.7 bits (78), Expect = 0.095, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 101 LECAVCLSKFEDTEIL---RLL--PKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
+ C +C+ + +EI+ RL+ +C H F C+ L+ ++CP CR K+N
Sbjct: 11 VSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQW---LEKHSSCPLC 144
C+VCL ++ I+ +C H F +CI +W LE+ CP+C
Sbjct: 18 CSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 101 LECAVCLSKFEDTEIL---RLL--PKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
+ C +C+ + +EI+ RL+ +C H F C+ L+ ++CP CR K+N
Sbjct: 4 VSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 101 LECAVCLSKFEDTEIL---RLL--PKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
+ C +C+ + +EI+ RL+ +C H F C+ L+ ++CP CR K+N
Sbjct: 16 VSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 93 SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-EKHSSCPLCR 145
S++ + C +C K D RL P C SCI +WL E+ + CP CR
Sbjct: 15 SVESIAEVFRCFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153
C++C D + +C H F SCI + + CP C + V+ P
Sbjct: 18 CSICKGYLIDATTI---TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCR 145
C VC K E L L +C A+HI C++ L+K + CP C+
Sbjct: 29 CRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 87 PFFRFSSLKGSKQGLE--CAVCLSKF----EDTEILRLLPKCKHAFHISCIDQWL----- 135
P F S K K + C VC +D + + +C AFHI C+D L
Sbjct: 6 PEFSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 65
Query: 136 EKHSSCPLCR 145
E CP CR
Sbjct: 66 EDEWYCPECR 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,963,378
Number of Sequences: 62578
Number of extensions: 345852
Number of successful extensions: 767
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 46
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)