Query 041871
Match_columns 415
No_of_seqs 406 out of 1985
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 99.9 1.6E-28 3.5E-33 248.5 0.7 127 95-239 170-296 (493)
2 KOG4628 Predicted E3 ubiquitin 99.7 1.5E-16 3.2E-21 159.9 10.3 78 74-152 203-281 (348)
3 PF13639 zf-RING_2: Ring finge 99.3 4.4E-13 9.6E-18 96.5 2.1 44 101-145 1-44 (44)
4 PHA02929 N1R/p28-like protein; 99.1 3.1E-11 6.7E-16 116.6 4.9 75 75-149 147-227 (238)
5 COG5540 RING-finger-containing 99.1 5.3E-11 1.2E-15 116.8 2.5 53 97-150 320-373 (374)
6 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.4E-10 3E-15 92.8 3.6 45 100-145 19-73 (73)
7 COG5243 HRD1 HRD ubiquitin lig 98.9 2.5E-10 5.4E-15 114.7 1.8 71 78-151 267-347 (491)
8 KOG0317 Predicted E3 ubiquitin 98.8 4E-09 8.7E-14 103.3 5.6 51 99-153 238-288 (293)
9 KOG0823 Predicted E3 ubiquitin 98.7 5.2E-09 1.1E-13 99.8 2.9 55 97-155 44-101 (230)
10 PLN03208 E3 ubiquitin-protein 98.7 7.6E-09 1.6E-13 96.9 3.8 54 98-155 16-85 (193)
11 cd00162 RING RING-finger (Real 98.7 1.3E-08 2.9E-13 71.1 3.4 44 102-148 1-45 (45)
12 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.6E-08 3.5E-13 71.0 3.1 39 103-144 1-39 (39)
13 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.7E-08 3.6E-13 74.6 3.3 46 100-149 2-48 (50)
14 PHA02926 zinc finger-like prot 98.6 1.7E-08 3.7E-13 96.0 2.0 54 97-150 167-231 (242)
15 PF12861 zf-Apc11: Anaphase-pr 98.5 5.4E-08 1.2E-12 80.0 3.1 52 99-150 20-83 (85)
16 smart00504 Ubox Modified RING 98.5 1.2E-07 2.5E-12 72.5 4.0 49 101-153 2-50 (63)
17 KOG0320 Predicted E3 ubiquitin 98.5 5.5E-08 1.2E-12 89.6 2.4 53 98-152 129-181 (187)
18 PF00097 zf-C3HC4: Zinc finger 98.5 1E-07 2.2E-12 67.2 3.0 39 103-144 1-41 (41)
19 PF15227 zf-C3HC4_4: zinc fing 98.5 9.8E-08 2.1E-12 68.6 2.6 38 103-144 1-42 (42)
20 KOG0802 E3 ubiquitin ligase [P 98.5 4.7E-08 1E-12 104.9 1.3 51 99-150 290-342 (543)
21 PF14634 zf-RING_5: zinc-RING 98.4 1.7E-07 3.6E-12 67.7 2.9 44 102-146 1-44 (44)
22 TIGR00599 rad18 DNA repair pro 98.4 2.1E-07 4.6E-12 96.1 3.8 53 95-151 21-73 (397)
23 smart00184 RING Ring finger. E 98.4 3E-07 6.6E-12 61.9 3.0 38 103-144 1-39 (39)
24 KOG0828 Predicted E3 ubiquitin 98.3 1.4E-06 3E-11 90.8 6.4 51 99-150 570-635 (636)
25 COG5194 APC11 Component of SCF 98.2 6.2E-07 1.3E-11 72.6 2.8 49 102-150 33-82 (88)
26 KOG1734 Predicted RING-contain 98.2 1E-06 2.3E-11 85.9 3.2 53 98-151 222-283 (328)
27 KOG2164 Predicted E3 ubiquitin 98.2 8.8E-07 1.9E-11 92.8 2.9 55 100-158 186-245 (513)
28 COG5574 PEX10 RING-finger-cont 98.0 1.9E-06 4.2E-11 83.8 2.3 51 99-153 214-266 (271)
29 COG5219 Uncharacterized conser 98.0 7.1E-07 1.5E-11 98.4 -0.9 69 81-149 1450-1523(1525)
30 KOG0287 Postreplication repair 98.0 1E-06 2.3E-11 88.2 0.4 58 93-154 16-73 (442)
31 TIGR00570 cdk7 CDK-activating 97.9 6.5E-06 1.4E-10 82.4 3.9 55 100-155 3-60 (309)
32 KOG1493 Anaphase-promoting com 97.9 2.1E-06 4.6E-11 69.0 0.3 50 100-149 20-81 (84)
33 COG5432 RAD18 RING-finger-cont 97.9 3.6E-06 7.8E-11 82.9 1.5 54 93-150 18-71 (391)
34 PF04564 U-box: U-box domain; 97.9 5.2E-06 1.1E-10 66.3 2.1 51 100-154 4-55 (73)
35 KOG2177 Predicted E3 ubiquitin 97.9 4E-06 8.7E-11 78.9 1.5 46 97-146 10-55 (386)
36 KOG2930 SCF ubiquitin ligase, 97.9 4.9E-06 1.1E-10 70.5 1.5 49 99-147 45-106 (114)
37 smart00744 RINGv The RING-vari 97.8 1.4E-05 3.1E-10 59.3 2.9 42 102-145 1-49 (49)
38 PF13445 zf-RING_UBOX: RING-ty 97.8 1.7E-05 3.6E-10 57.5 2.6 34 103-138 1-35 (43)
39 PF11793 FANCL_C: FANCL C-term 97.6 1.3E-05 2.8E-10 63.7 0.5 50 100-149 2-66 (70)
40 KOG0827 Predicted E3 ubiquitin 97.5 4E-05 8.7E-10 78.2 1.9 48 101-148 5-55 (465)
41 KOG0978 E3 ubiquitin ligase in 97.4 4.1E-05 8.9E-10 83.7 1.1 53 98-154 641-694 (698)
42 KOG0825 PHD Zn-finger protein 97.4 3.4E-05 7.5E-10 84.2 0.4 52 100-152 123-174 (1134)
43 PF14835 zf-RING_6: zf-RING of 97.3 4.5E-05 9.7E-10 59.7 -0.0 52 100-156 7-58 (65)
44 KOG0311 Predicted E3 ubiquitin 97.3 3.3E-05 7.1E-10 78.0 -1.3 51 97-150 40-91 (381)
45 KOG4265 Predicted E3 ubiquitin 97.3 0.00018 3.9E-09 73.0 3.0 49 98-150 288-337 (349)
46 KOG1645 RING-finger-containing 97.2 0.00024 5.2E-09 73.1 2.8 49 99-147 3-54 (463)
47 KOG1039 Predicted E3 ubiquitin 97.0 0.00039 8.5E-09 70.9 2.6 54 98-151 159-223 (344)
48 KOG4172 Predicted E3 ubiquitin 96.9 0.00026 5.6E-09 53.8 0.4 45 101-149 8-54 (62)
49 KOG4445 Uncharacterized conser 96.9 0.00034 7.3E-09 69.6 1.4 55 98-153 113-190 (368)
50 PF02148 zf-UBP: Zn-finger in 96.8 0.00017 3.7E-09 55.9 -1.2 52 177-232 9-60 (63)
51 KOG0824 Predicted E3 ubiquitin 96.8 0.00065 1.4E-08 67.6 1.9 47 100-150 7-54 (324)
52 KOG0297 TNF receptor-associate 96.6 0.0011 2.4E-08 68.8 2.2 54 97-153 18-71 (391)
53 KOG1785 Tyrosine kinase negati 96.6 0.00093 2E-08 68.7 1.5 50 102-155 371-422 (563)
54 KOG4159 Predicted E3 ubiquitin 96.6 0.0012 2.6E-08 68.6 2.3 49 98-150 82-130 (398)
55 KOG3970 Predicted E3 ubiquitin 96.5 0.0014 3E-08 63.0 1.8 59 95-155 45-111 (299)
56 KOG1571 Predicted E3 ubiquitin 96.4 0.00064 1.4E-08 69.1 -1.1 45 98-149 303-347 (355)
57 PF11789 zf-Nse: Zinc-finger o 96.3 0.0023 5E-08 49.0 2.0 43 98-143 9-53 (57)
58 KOG0801 Predicted E3 ubiquitin 96.0 0.0023 5E-08 58.7 0.8 31 97-128 174-204 (205)
59 COG5152 Uncharacterized conser 96.0 0.0032 6.9E-08 59.5 1.6 46 99-148 195-240 (259)
60 KOG2660 Locus-specific chromos 95.9 0.003 6.6E-08 63.6 1.0 54 98-154 13-66 (331)
61 KOG1941 Acetylcholine receptor 95.6 0.0043 9.3E-08 63.8 1.0 46 100-146 365-413 (518)
62 PF05883 Baculo_RING: Baculovi 95.6 0.0045 9.8E-08 55.2 0.8 35 100-135 26-66 (134)
63 KOG3039 Uncharacterized conser 95.4 0.012 2.6E-07 57.4 3.0 55 100-154 221-275 (303)
64 KOG2879 Predicted E3 ubiquitin 95.3 0.012 2.6E-07 58.1 2.9 50 98-150 237-288 (298)
65 KOG1428 Inhibitor of type V ad 95.1 0.013 2.9E-07 68.0 2.6 70 80-150 3465-3545(3738)
66 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.029 6.3E-07 55.1 3.9 58 97-155 110-167 (260)
67 PF10367 Vps39_2: Vacuolar sor 94.6 0.014 3E-07 48.7 1.0 33 98-132 76-108 (109)
68 KOG1813 Predicted E3 ubiquitin 94.6 0.013 2.8E-07 58.5 0.9 46 100-149 241-286 (313)
69 KOG0826 Predicted E3 ubiquitin 94.2 0.053 1.2E-06 54.9 4.3 47 98-147 298-344 (357)
70 KOG1002 Nucleotide excision re 94.2 0.023 5E-07 60.5 1.7 51 97-151 533-588 (791)
71 KOG4739 Uncharacterized protei 94.1 0.022 4.7E-07 55.4 1.2 45 102-150 5-49 (233)
72 COG5222 Uncharacterized conser 94.0 0.03 6.4E-07 56.1 2.1 47 101-150 275-323 (427)
73 PHA03096 p28-like protein; Pro 93.9 0.027 5.9E-07 56.3 1.5 37 101-137 179-219 (284)
74 PF12906 RINGv: RING-variant d 93.8 0.049 1.1E-06 40.0 2.5 41 103-144 1-47 (47)
75 PHA02825 LAP/PHD finger-like p 93.8 0.056 1.2E-06 49.7 3.3 50 97-150 5-60 (162)
76 PHA02862 5L protein; Provision 93.8 0.045 9.7E-07 49.6 2.6 46 100-150 2-54 (156)
77 KOG1814 Predicted E3 ubiquitin 93.8 0.03 6.5E-07 58.1 1.7 47 99-146 183-237 (445)
78 KOG4692 Predicted E3 ubiquitin 93.4 0.048 1E-06 55.7 2.4 49 98-150 420-468 (489)
79 PF14570 zf-RING_4: RING/Ubox 93.2 0.071 1.5E-06 39.6 2.4 45 103-148 1-47 (48)
80 KOG1952 Transcription factor N 93.1 0.047 1E-06 61.1 1.9 51 98-148 189-246 (950)
81 PF14447 Prok-RING_4: Prokaryo 93.1 0.049 1.1E-06 41.6 1.4 46 101-152 8-53 (55)
82 smart00290 ZnF_UBP Ubiquitin C 92.7 0.034 7.4E-07 40.6 0.1 38 176-217 8-45 (50)
83 KOG4275 Predicted E3 ubiquitin 91.5 0.044 9.6E-07 54.7 -0.6 42 100-149 300-342 (350)
84 PF08746 zf-RING-like: RING-li 91.5 0.11 2.3E-06 37.6 1.5 41 103-144 1-43 (43)
85 COG5175 MOT2 Transcriptional r 91.4 0.13 2.8E-06 52.4 2.5 57 98-155 12-70 (480)
86 KOG2114 Vacuolar assembly/sort 90.0 0.14 3.1E-06 57.3 1.5 41 101-147 841-881 (933)
87 KOG0827 Predicted E3 ubiquitin 89.6 0.035 7.6E-07 57.3 -3.3 50 100-150 196-246 (465)
88 KOG1001 Helicase-like transcri 89.5 0.14 3.1E-06 56.9 1.1 47 101-152 455-503 (674)
89 KOG3268 Predicted E3 ubiquitin 89.5 0.22 4.7E-06 46.7 2.1 30 121-150 189-229 (234)
90 KOG0298 DEAD box-containing he 88.8 0.13 2.7E-06 60.0 0.0 47 99-148 1152-1198(1394)
91 PF07800 DUF1644: Protein of u 88.7 0.4 8.6E-06 44.1 3.1 54 99-153 1-95 (162)
92 KOG4185 Predicted E3 ubiquitin 87.9 0.33 7.1E-06 48.1 2.3 48 100-148 3-54 (296)
93 PF14446 Prok-RING_1: Prokaryo 87.9 0.53 1.2E-05 35.9 2.8 35 99-133 4-38 (54)
94 COG5236 Uncharacterized conser 87.6 0.51 1.1E-05 48.4 3.4 65 80-148 40-107 (493)
95 PF10272 Tmpp129: Putative tra 86.2 0.5 1.1E-05 48.8 2.6 32 122-153 311-355 (358)
96 KOG3161 Predicted E3 ubiquitin 85.9 0.23 5.1E-06 54.3 -0.0 46 99-147 10-55 (861)
97 KOG1940 Zn-finger protein [Gen 85.1 0.47 1E-05 47.4 1.7 46 100-146 158-204 (276)
98 KOG2932 E3 ubiquitin ligase in 84.5 0.36 7.8E-06 48.8 0.6 43 102-149 92-134 (389)
99 KOG3800 Predicted E3 ubiquitin 84.2 0.79 1.7E-05 45.9 2.8 54 102-155 2-57 (300)
100 COG5220 TFB3 Cdk activating ki 83.8 0.54 1.2E-05 46.0 1.4 54 99-152 9-67 (314)
101 COG5207 UBP14 Isopeptidase T [ 83.7 0.48 1E-05 50.8 1.1 76 131-219 145-226 (749)
102 KOG2817 Predicted E3 ubiquitin 83.0 3.1 6.8E-05 43.4 6.6 50 98-148 332-384 (394)
103 KOG1100 Predicted E3 ubiquitin 82.4 0.61 1.3E-05 44.7 1.2 39 103-149 161-200 (207)
104 KOG3002 Zn finger protein [Gen 80.5 1.2 2.5E-05 45.2 2.4 47 97-149 45-91 (299)
105 KOG2034 Vacuolar sorting prote 80.4 0.77 1.7E-05 52.0 1.3 36 98-135 815-850 (911)
106 KOG0309 Conserved WD40 repeat- 79.7 1 2.2E-05 50.3 1.9 23 121-143 1047-1069(1081)
107 KOG0825 PHD Zn-finger protein 79.3 1.1 2.3E-05 50.4 1.9 53 99-151 95-156 (1134)
108 KOG1609 Protein involved in mR 77.6 1.3 2.7E-05 43.7 1.7 51 100-151 78-136 (323)
109 KOG4362 Transcriptional regula 76.6 0.7 1.5E-05 51.2 -0.5 47 100-150 21-70 (684)
110 PF02439 Adeno_E3_CR2: Adenovi 74.6 6.2 0.00013 28.0 4.0 28 26-54 5-32 (38)
111 KOG0944 Ubiquitin-specific pro 73.9 1.3 2.9E-05 48.9 0.8 45 171-219 183-233 (763)
112 KOG1873 Ubiquitin-specific pro 73.8 0.7 1.5E-05 51.6 -1.4 93 122-229 45-143 (877)
113 PF05290 Baculo_IE-1: Baculovi 73.0 2.6 5.6E-05 37.9 2.3 53 99-151 79-134 (140)
114 COG5183 SSM4 Protein involved 72.6 2.2 4.7E-05 48.2 2.0 53 98-151 10-68 (1175)
115 KOG1812 Predicted E3 ubiquitin 71.8 2 4.3E-05 44.9 1.5 38 98-136 144-182 (384)
116 KOG3113 Uncharacterized conser 71.3 3.4 7.4E-05 40.9 2.8 55 100-156 111-165 (293)
117 KOG4367 Predicted Zn-finger pr 71.3 1.8 3.8E-05 45.8 0.9 34 99-136 3-36 (699)
118 PF03854 zf-P11: P-11 zinc fin 70.0 1.7 3.8E-05 32.3 0.4 29 122-150 18-47 (50)
119 KOG3899 Uncharacterized conser 69.2 2.7 5.9E-05 42.3 1.7 33 122-154 325-370 (381)
120 KOG3053 Uncharacterized conser 68.7 2.4 5.2E-05 42.0 1.2 55 97-152 17-85 (293)
121 KOG1829 Uncharacterized conser 68.4 1.9 4E-05 47.3 0.4 45 98-146 509-558 (580)
122 cd02669 Peptidase_C19M A subfa 67.8 1.7 3.6E-05 45.9 -0.1 46 173-222 22-67 (440)
123 KOG4718 Non-SMC (structural ma 67.0 2.6 5.6E-05 40.6 1.0 46 99-147 180-225 (235)
124 PF13901 DUF4206: Domain of un 64.1 5 0.00011 38.1 2.4 42 99-146 151-197 (202)
125 KOG0802 E3 ubiquitin ligase [P 63.4 3.6 7.7E-05 44.7 1.4 47 99-153 478-524 (543)
126 PF01102 Glycophorin_A: Glycop 63.3 13 0.00027 33.0 4.6 22 20-41 58-81 (122)
127 PF15050 SCIMP: SCIMP protein 63.3 8.3 0.00018 34.1 3.3 33 22-56 7-39 (133)
128 PF02891 zf-MIZ: MIZ/SP-RING z 60.0 7 0.00015 29.0 2.0 42 101-146 3-49 (50)
129 PF10571 UPF0547: Uncharacteri 59.4 5 0.00011 26.0 1.0 23 102-126 2-24 (26)
130 KOG0269 WD40 repeat-containing 57.7 8.1 0.00018 43.5 2.9 41 101-143 780-820 (839)
131 PF07975 C1_4: TFIIH C1-like d 57.3 7.3 0.00016 29.4 1.7 42 103-145 2-50 (51)
132 PF15102 TMEM154: TMEM154 prot 55.9 9.2 0.0002 34.9 2.5 9 129-137 128-136 (146)
133 PF12877 DUF3827: Domain of un 55.3 14 0.0003 41.1 4.1 37 19-58 265-301 (684)
134 TIGR00622 ssl1 transcription f 55.3 15 0.00032 32.2 3.5 46 100-145 55-110 (112)
135 smart00249 PHD PHD zinc finger 53.5 9.2 0.0002 26.2 1.7 31 102-133 1-31 (47)
136 smart00132 LIM Zinc-binding do 52.4 12 0.00025 24.8 2.0 37 102-148 1-37 (39)
137 PF13719 zinc_ribbon_5: zinc-r 51.6 8.1 0.00018 26.8 1.1 27 101-127 3-36 (37)
138 KOG1815 Predicted E3 ubiquitin 49.3 9.8 0.00021 40.3 1.8 54 98-154 68-131 (444)
139 PF07204 Orthoreo_P10: Orthore 49.2 10 0.00023 32.1 1.6 27 20-46 38-64 (98)
140 PF13717 zinc_ribbon_4: zinc-r 47.0 12 0.00026 25.9 1.4 27 101-127 3-36 (36)
141 PF01102 Glycophorin_A: Glycop 46.5 35 0.00075 30.2 4.5 20 23-42 67-86 (122)
142 PF05393 Hum_adeno_E3A: Human 46.2 30 0.00065 29.1 3.8 25 21-45 27-51 (94)
143 KOG3005 GIY-YIG type nuclease 45.8 11 0.00023 37.7 1.3 48 101-148 183-242 (276)
144 PF04689 S1FA: DNA binding pro 45.0 20 0.00043 28.4 2.4 34 20-53 7-40 (69)
145 PF00628 PHD: PHD-finger; Int 44.6 12 0.00027 26.9 1.2 43 102-145 1-49 (51)
146 PF08374 Protocadherin: Protoc 43.7 21 0.00046 34.6 3.0 29 22-52 36-64 (221)
147 KOG2066 Vacuolar assembly/sort 43.4 8.8 0.00019 43.4 0.4 43 100-144 784-830 (846)
148 PF01363 FYVE: FYVE zinc finge 43.3 12 0.00026 28.9 1.0 37 98-134 7-43 (69)
149 KOG1812 Predicted E3 ubiquitin 42.5 11 0.00023 39.5 0.8 44 100-144 306-351 (384)
150 COG5109 Uncharacterized conser 42.1 57 0.0012 33.5 5.8 48 96-144 332-382 (396)
151 KOG2807 RNA polymerase II tran 41.6 22 0.00047 36.6 2.8 61 84-145 312-374 (378)
152 KOG2068 MOT2 transcription fac 37.6 27 0.00059 35.8 2.8 48 100-148 249-297 (327)
153 PLN02189 cellulose synthase 37.3 28 0.00061 40.8 3.2 50 100-149 34-87 (1040)
154 PF06365 CD34_antigen: CD34/Po 37.2 43 0.00094 32.2 3.9 9 27-35 101-109 (202)
155 PF05568 ASFV_J13L: African sw 37.1 28 0.00061 31.9 2.5 6 23-28 27-32 (189)
156 KOG3579 Predicted E3 ubiquitin 36.9 17 0.00037 36.7 1.2 38 99-137 267-305 (352)
157 PF02009 Rifin_STEVOR: Rifin/s 36.9 36 0.00079 34.5 3.6 26 26-52 258-283 (299)
158 PF00412 LIM: LIM domain; Int 36.7 25 0.00055 25.6 1.9 40 103-152 1-40 (58)
159 PF06844 DUF1244: Protein of u 35.4 21 0.00046 28.4 1.3 12 125-136 11-22 (68)
160 PF06024 DUF912: Nucleopolyhed 34.6 31 0.00067 29.3 2.3 26 23-48 58-83 (101)
161 PF04478 Mid2: Mid2 like cell 34.3 11 0.00023 34.7 -0.6 15 25-39 50-64 (154)
162 PF15176 LRR19-TM: Leucine-ric 32.8 56 0.0012 28.1 3.5 26 25-50 15-40 (102)
163 cd00065 FYVE FYVE domain; Zinc 31.7 34 0.00074 25.1 1.9 34 101-134 3-36 (57)
164 KOG3039 Uncharacterized conser 31.5 32 0.00069 34.2 2.1 36 97-136 40-75 (303)
165 PF03229 Alpha_GJ: Alphavirus 31.5 99 0.0021 27.4 4.8 34 20-53 79-112 (126)
166 PF14991 MLANA: Protein melan- 31.4 9.5 0.00021 33.4 -1.4 20 37-56 33-52 (118)
167 KOG2041 WD40 repeat protein [G 31.2 30 0.00066 39.2 2.1 46 99-148 1130-1184(1189)
168 PF08114 PMP1_2: ATPase proteo 31.0 54 0.0012 23.8 2.6 29 26-54 9-37 (43)
169 smart00064 FYVE Protein presen 31.0 40 0.00086 25.8 2.2 36 100-135 10-45 (68)
170 PF01708 Gemini_mov: Geminivir 29.6 82 0.0018 26.6 3.9 31 21-51 32-62 (91)
171 KOG2979 Protein involved in DN 28.0 32 0.00069 34.2 1.4 41 100-143 176-218 (262)
172 PF14569 zf-UDP: Zinc-binding 27.9 74 0.0016 26.2 3.3 52 99-150 8-63 (80)
173 PLN02436 cellulose synthase A 27.8 51 0.0011 39.0 3.2 50 100-149 36-89 (1094)
174 PF15298 AJAP1_PANP_C: AJAP1/P 27.5 46 0.00099 31.9 2.3 33 22-54 95-127 (205)
175 KOG3842 Adaptor protein Pellin 27.5 52 0.0011 33.8 2.9 52 100-152 341-417 (429)
176 PF01299 Lamp: Lysosome-associ 26.8 93 0.002 31.2 4.6 9 2-10 243-251 (306)
177 PF07423 DUF1510: Protein of u 26.8 34 0.00074 33.2 1.4 8 25-32 16-23 (217)
178 PF06422 PDR_CDR: CDR ABC tran 26.6 71 0.0015 27.0 3.2 31 19-49 44-74 (103)
179 PF04216 FdhE: Protein involve 26.4 13 0.00027 37.1 -1.7 49 99-147 171-220 (290)
180 PF04710 Pellino: Pellino; In 26.1 22 0.00048 37.4 0.0 51 100-151 328-403 (416)
181 PF14311 DUF4379: Domain of un 25.8 46 0.00099 24.8 1.7 23 121-144 33-55 (55)
182 PF10497 zf-4CXXC_R1: Zinc-fin 25.3 77 0.0017 27.2 3.1 47 99-146 6-69 (105)
183 PF02009 Rifin_STEVOR: Rifin/s 24.6 77 0.0017 32.2 3.5 26 30-55 258-283 (299)
184 PLN02638 cellulose synthase A 24.6 64 0.0014 38.2 3.3 50 100-149 17-70 (1079)
185 PF07282 OrfB_Zn_ribbon: Putat 24.4 1E+02 0.0022 23.7 3.4 32 100-131 28-61 (69)
186 PF13832 zf-HC5HC2H_2: PHD-zin 24.3 67 0.0014 26.9 2.6 34 99-134 54-88 (110)
187 smart00647 IBR In Between Ring 23.8 23 0.0005 26.3 -0.3 20 115-134 39-58 (64)
188 PF07010 Endomucin: Endomucin; 23.7 1.9E+02 0.004 28.6 5.7 21 34-54 197-217 (259)
189 PF14914 LRRC37AB_C: LRRC37A/B 23.6 1.2E+02 0.0027 27.8 4.2 27 28-54 122-148 (154)
190 KOG0824 Predicted E3 ubiquitin 23.2 28 0.00061 35.4 0.1 50 98-150 103-152 (324)
191 PRK14750 kdpF potassium-transp 22.7 1.4E+02 0.0029 20.1 3.1 17 27-43 3-19 (29)
192 PRK14748 kdpF potassium-transp 22.4 1.3E+02 0.0029 20.1 3.1 20 27-46 3-22 (29)
193 KOG3799 Rab3 effector RIM1 and 22.4 21 0.00045 32.3 -0.9 18 96-113 61-79 (169)
194 PHA02657 hypothetical protein; 21.9 1.3E+02 0.0028 25.3 3.7 15 36-50 36-50 (95)
195 PF02480 Herpes_gE: Alphaherpe 21.9 30 0.00065 36.9 0.0 25 23-47 351-375 (439)
196 COG1545 Predicted nucleic-acid 21.6 51 0.0011 29.6 1.4 23 118-148 31-53 (140)
197 PF02318 FYVE_2: FYVE-type zin 21.5 53 0.0012 28.4 1.5 34 99-132 53-87 (118)
198 PF05605 zf-Di19: Drought indu 21.4 17 0.00037 27.0 -1.4 14 100-113 2-15 (54)
199 KOG0860 Synaptobrevin/VAMP-lik 21.4 1E+02 0.0022 27.2 3.2 18 29-46 96-113 (116)
200 PHA03255 BDLF3; Provisional 21.3 1.5E+02 0.0033 28.0 4.4 30 15-44 174-203 (234)
201 PF06906 DUF1272: Protein of u 21.2 1.6E+02 0.0035 22.8 3.8 45 101-150 6-53 (57)
202 PHA02849 putative transmembran 21.2 1.6E+02 0.0035 24.3 4.0 17 23-39 12-28 (82)
203 PLN02400 cellulose synthase 21.1 65 0.0014 38.2 2.4 50 100-149 36-89 (1085)
204 PRK11088 rrmA 23S rRNA methylt 20.9 58 0.0013 31.7 1.8 25 101-126 3-27 (272)
205 PF05510 Sarcoglycan_2: Sarcog 20.9 82 0.0018 33.2 2.9 36 21-56 279-314 (386)
206 TIGR01478 STEVOR variant surfa 20.8 1.2E+02 0.0025 30.9 3.8 26 30-55 262-287 (295)
207 COG5627 MMS21 DNA repair prote 20.8 49 0.0011 32.7 1.2 41 100-143 189-231 (275)
208 PF10717 ODV-E18: Occlusion-de 20.7 1.7E+02 0.0037 24.4 4.1 14 19-32 18-31 (85)
209 PF04423 Rad50_zn_hook: Rad50 20.4 37 0.0008 25.2 0.2 12 140-151 22-33 (54)
210 PF10577 UPF0560: Uncharacteri 20.2 1.1E+02 0.0023 35.3 3.7 13 248-260 598-610 (807)
211 PTZ00370 STEVOR; Provisional 20.0 1.2E+02 0.0026 30.8 3.7 26 30-55 258-283 (296)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.94 E-value=1.6e-28 Score=248.53 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=109.0
Q ss_pred cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCccccc
Q 041871 95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERRED 174 (415)
Q Consensus 95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~ 174 (415)
.+..+.++||||||.++.....++...|.|.||..|+..| ...+||+||+...+..... .....++
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~~ve~------------~~c~~c~ 235 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPSVVES------------SLCLACG 235 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcchhhh------------hhhhhhc
Confidence 3456889999999999988866655569999999999999 6689999999876431111 1122446
Q ss_pred CcccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccceEEeccc
Q 041871 175 SNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDV 239 (415)
Q Consensus 175 ~~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~HRiI~S~~ 239 (415)
...+||+|.+||++|||||..|||.||| +|++|+|+++++++++|||+||+||||+++++.
T Consensus 236 ~~~~LwicliCg~vgcgrY~eghA~rHw----eet~H~yalel~tqrVWDYAGDnYVhRl~~~~~ 296 (493)
T KOG0804|consen 236 CTEDLWICLICGNVGCGRYKEGHARRHW----EETGHCYALELETQRVWDYAGDNYVHRLPQSKT 296 (493)
T ss_pred ccccEEEEEEccceecccccchhHHHHH----HhhcceEEEeecceeeeecccchhhhhccccCC
Confidence 6789999999999999999999999999 999999999999999999999999999999987
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-16 Score=159.86 Aligned_cols=78 Identities=33% Similarity=0.844 Sum_probs=67.5
Q ss_pred ccCCCCHHHHhhCCceeeecCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCC-CCcccccccCCC
Q 041871 74 RFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAED 152 (415)
Q Consensus 74 r~~gl~~~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~s-CPlCR~~v~~~~ 152 (415)
+..++.+..+.++|...|..........+|+||||+|+.+++++.|| |+|.||..||++||..+.+ ||+|+..+....
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 34577899999999999987666554579999999999999999999 9999999999999988754 999999876543
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.33 E-value=4.4e-13 Score=96.51 Aligned_cols=44 Identities=55% Similarity=1.263 Sum_probs=40.2
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR 145 (415)
++|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999988999998 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.14 E-value=3.1e-11 Score=116.63 Aligned_cols=75 Identities=32% Similarity=0.690 Sum_probs=57.6
Q ss_pred cCCCCHHHHhhCCceeeec--CcCCcCCCcccccccccccccc----eEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 75 FSGIDKAVIESLPFFRFSS--LKGSKQGLECAVCLSKFEDTEI----LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 75 ~~gl~~~~i~~Lp~~~~~~--~~~~~e~~~C~ICle~~~~~~~----~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
..+..+..++.+|.+.... ......+.+|+||++.+..+.. +.+++.|+|.||..||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 3566889999999875432 2233456799999999876531 234555999999999999999999999999977
Q ss_pred c
Q 041871 149 N 149 (415)
Q Consensus 149 ~ 149 (415)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.3e-11 Score=116.85 Aligned_cols=53 Identities=43% Similarity=1.155 Sum_probs=47.5
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNA 150 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~ 150 (415)
.+.+.+|+|||+.|...+.++++| |+|.||..|+++|+. ....||+||..+++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 345689999999999999999999 999999999999998 45679999999875
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.04 E-value=1.4e-10 Score=92.85 Aligned_cols=45 Identities=42% Similarity=0.997 Sum_probs=35.2
Q ss_pred CCcccccccccccc----------cceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871 100 GLECAVCLSKFEDT----------EILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145 (415)
Q Consensus 100 ~~~C~ICle~~~~~----------~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR 145 (415)
+..|+||++.|.++ -.+... .|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44699999999433 233334 4999999999999999999999997
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.5e-10 Score=114.71 Aligned_cols=71 Identities=27% Similarity=0.697 Sum_probs=52.2
Q ss_pred CCHHHHhhCCceeeecCcCCcCCCccccccccc-ccc---------cceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 78 IDKAVIESLPFFRFSSLKGSKQGLECAVCLSKF-EDT---------EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 78 l~~~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~-~~~---------~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
..++.-+-+|+....+. ..++..|.||++++ ..+ .+.+.+| |||+||-+|+..|++++.+||+||.+
T Consensus 267 ~~kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 267 ATKDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred HhhHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence 34455555665554443 34567999999994 433 1335688 99999999999999999999999999
Q ss_pred ccCC
Q 041871 148 VNAE 151 (415)
Q Consensus 148 v~~~ 151 (415)
+..+
T Consensus 344 ~ifd 347 (491)
T COG5243 344 VIFD 347 (491)
T ss_pred cccc
Confidence 6543
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4e-09 Score=103.34 Aligned_cols=51 Identities=33% Similarity=0.809 Sum_probs=44.3
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
....|.+||+....+. .+| |||+||..||..|......||+||..+.+.+.
T Consensus 238 a~~kC~LCLe~~~~pS---aTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPS---ATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCC---cCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 4579999999987773 566 99999999999999999999999999887654
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.2e-09 Score=99.84 Aligned_cols=55 Identities=27% Similarity=0.712 Sum_probs=44.2
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC---CCCCcccccccCCCCCc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~~~~~~~ 155 (415)
.....+|.|||+.-+++ +++. |||.||..||.+||+.+ ..||+|+..+..+.+.+
T Consensus 44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 35577999999997776 3444 99999999999999754 35999999998766554
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.72 E-value=7.6e-09 Score=96.92 Aligned_cols=54 Identities=26% Similarity=0.710 Sum_probs=42.8
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----------------CCCCCcccccccCCCCCc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----------------HSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----------------~~sCPlCR~~v~~~~~~~ 155 (415)
.+..+|+||++.+.++ .+++ |||.||..||..|+.. ...||+||..+...+...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 4568999999998766 3455 9999999999999852 246999999997655443
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.69 E-value=1.3e-08 Score=71.07 Aligned_cols=44 Identities=52% Similarity=1.255 Sum_probs=35.6
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKV 148 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 148 (415)
+|+||++.+. ......+ |+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999982 3344454 9999999999999987 67799998753
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.66 E-value=1.6e-08 Score=71.04 Aligned_cols=39 Identities=41% Similarity=1.171 Sum_probs=32.4
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHhcCCCCCcc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlC 144 (415)
|+||++.+.++ +..++ |||.||..|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998773 34566 99999999999999998899998
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.66 E-value=1.7e-08 Score=74.61 Aligned_cols=46 Identities=35% Similarity=0.928 Sum_probs=38.2
Q ss_pred CCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
+..|.||++.... +..+| |||. ||..|+..|++....||+||.++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998543 56777 9999 999999999999999999999874
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.59 E-value=1.7e-08 Score=96.04 Aligned_cols=54 Identities=30% Similarity=0.811 Sum_probs=40.2
Q ss_pred CcCCCcccccccccccc-----cceEecCccccccchhHHHHHHhcC------CCCCcccccccC
Q 041871 97 SKQGLECAVCLSKFEDT-----EILRLLPKCKHAFHISCIDQWLEKH------SSCPLCRLKVNA 150 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~-----~~~~~lp~C~H~FH~~CI~~WL~~~------~sCPlCR~~v~~ 150 (415)
...+.+|+||+|..-.. ....+|+.|+|.||..||..|...+ .+||+||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34567999999986332 1223566699999999999998743 359999998753
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.53 E-value=5.4e-08 Score=80.01 Aligned_cols=52 Identities=31% Similarity=0.774 Sum_probs=38.7
Q ss_pred CCCcccccccccccc--------cc-eEecCccccccchhHHHHHHhc---CCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDT--------EI-LRLLPKCKHAFHISCIDQWLEK---HSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~--------~~-~~~lp~C~H~FH~~CI~~WL~~---~~sCPlCR~~v~~ 150 (415)
++..|.||...|+.. +. ..++..|+|.||.+||.+|+.. +..||+||.....
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 367899999988622 21 1233469999999999999985 4579999987643
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.49 E-value=1.2e-07 Score=72.45 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=42.0
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
..|+||++.+.++ .+++ |||+|+..||..|+..+..||+|+..+...+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 4799999999887 3556 99999999999999988899999988865444
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.5e-08 Score=89.62 Aligned_cols=53 Identities=28% Similarity=0.714 Sum_probs=43.5
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
.+...|+|||+.+..... +-.+|||+||..||..-++....||+|+..+..+.
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 345789999999876543 33469999999999999999999999998776543
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.48 E-value=1e-07 Score=67.16 Aligned_cols=39 Identities=51% Similarity=1.261 Sum_probs=33.4
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHh--cCCCCCcc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE--KHSSCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~sCPlC 144 (415)
|+||++.+..+. .+++ |+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988775 4566 999999999999998 45569998
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.46 E-value=9.8e-08 Score=68.58 Aligned_cols=38 Identities=42% Similarity=1.034 Sum_probs=28.9
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlC 144 (415)
|+||++.|.++. .++ |||.|+..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~Pv---~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV---SLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE---E-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc---ccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999984 455 99999999999998653 359988
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.7e-08 Score=104.95 Aligned_cols=51 Identities=33% Similarity=0.864 Sum_probs=43.9
Q ss_pred CCCcccccccccccccc--eEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEI--LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~--~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.+..|+||+|.+..+.. ...+| |+|+||..|+..|+++..+||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 46799999999988654 56777 99999999999999999999999995443
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.41 E-value=1.7e-07 Score=67.67 Aligned_cols=44 Identities=32% Similarity=0.852 Sum_probs=36.9
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 146 (415)
.|+||++.|.......+++ |||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995555667776 9999999999998755678999984
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=2.1e-07 Score=96.13 Aligned_cols=53 Identities=30% Similarity=0.678 Sum_probs=44.7
Q ss_pred cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
........|+||++.|..+. +++ |+|.||..||..|+.....||+|+..+...
T Consensus 21 ~~Le~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 44556789999999998773 456 999999999999998888899999988654
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=3e-07 Score=61.90 Aligned_cols=38 Identities=42% Similarity=1.181 Sum_probs=31.4
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlC 144 (415)
|+||++.. .....++ |+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 3445666 999999999999998 56679987
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.4e-06 Score=90.76 Aligned_cols=51 Identities=29% Similarity=0.845 Sum_probs=39.6
Q ss_pred CCCccccccccccccc--------------ceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTE--------------ILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~--------------~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~ 150 (415)
....|+||+..++--. ...++| |.|+||..|+..|+.. +-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3568999999874221 123456 9999999999999984 5589999998864
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.24 E-value=6.2e-07 Score=72.60 Aligned_cols=49 Identities=31% Similarity=0.632 Sum_probs=34.4
Q ss_pred cccccccccccccceEe-cCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 102 ECAVCLSKFEDTEILRL-LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~-lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.|+-|...+..++...+ .-.|+|.||.+||.+||..+..||+||+....
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 33334333334443322 22599999999999999999999999987654
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1e-06 Score=85.86 Aligned_cols=53 Identities=34% Similarity=0.716 Sum_probs=43.4
Q ss_pred cCCCccccccccccccc-------ceEecCccccccchhHHHHHH--hcCCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTE-------ILRLLPKCKHAFHISCIDQWL--EKHSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~-------~~~~lp~C~H~FH~~CI~~WL--~~~~sCPlCR~~v~~~ 151 (415)
.++..|+||-..+.... .+-.|. |+|+||..||.-|. .++++||.|+..++..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 35679999999987665 556777 99999999999995 4577899999988643
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.8e-07 Score=92.84 Aligned_cols=55 Identities=27% Similarity=0.577 Sum_probs=43.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccccccCCCCCcccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRLKVNAEDPTIFAY 158 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~v~~~~~~~~~~ 158 (415)
+..|||||+....+. ++.|||+||..||.+++.. ...||+|+..+.+++..+...
T Consensus 186 ~~~CPICL~~~~~p~----~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV----RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCccc----ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 679999999866552 2249999999999996643 346999999999887766543
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.9e-06 Score=83.83 Aligned_cols=51 Identities=37% Similarity=0.814 Sum_probs=41.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH-HHhcCCC-CCcccccccCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ-WLEKHSS-CPLCRLKVNAEDP 153 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~-WL~~~~s-CPlCR~~v~~~~~ 153 (415)
.+..|+||++....+ ..++ |||+||..||.. |-.++.. ||+||+.+.+.+.
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 467899999997666 3455 999999999999 8766655 9999998877654
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.04 E-value=7.1e-07 Score=98.38 Aligned_cols=69 Identities=26% Similarity=0.645 Sum_probs=47.1
Q ss_pred HHHhhCCceeeecCcCCcCCCccccccccccccc---ceEecCccccccchhHHHHHHhc--CCCCCccccccc
Q 041871 81 AVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTE---ILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVN 149 (415)
Q Consensus 81 ~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~ 149 (415)
...+.|..++.+-.....+..+|+||+..+..-+ .-..++.|.|.||..|+.+|+.. .++||+||..+.
T Consensus 1450 s~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1450 SFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3344444444443344456779999999876221 11344569999999999999985 467999997764
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.04 E-value=1e-06 Score=88.16 Aligned_cols=58 Identities=33% Similarity=0.717 Sum_probs=48.5
Q ss_pred cCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 93 SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 93 ~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
.....+....|-||.+.|..+ .++| |+|.||.-||..+|..+..||.|+..+...+..
T Consensus 16 slk~lD~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 344556677999999999888 3566 999999999999999999999999988765543
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=6.5e-06 Score=82.44 Aligned_cols=55 Identities=22% Similarity=0.539 Sum_probs=40.2
Q ss_pred CCcccccccc-ccccc-ceEecCccccccchhHHHHHHh-cCCCCCcccccccCCCCCc
Q 041871 100 GLECAVCLSK-FEDTE-ILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 100 ~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~~ 155 (415)
+..||+|... |-.+. .+.+.+ |||.||..||+..+. ....||.|+..+...+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 4589999996 33333 333344 999999999999554 4457999999988776543
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.1e-06 Score=68.97 Aligned_cols=50 Identities=32% Similarity=0.781 Sum_probs=36.0
Q ss_pred CCccccccccccc--------ccce-EecCccccccchhHHHHHHhcC---CCCCccccccc
Q 041871 100 GLECAVCLSKFED--------TEIL-RLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~--------~~~~-~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~ 149 (415)
+.+|-||.-.|+. ++.. .++-.|.|.||.+||.+|+... ..||+||....
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3488888888852 2211 2333699999999999999753 45999998754
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.91 E-value=3.6e-06 Score=82.90 Aligned_cols=54 Identities=31% Similarity=0.607 Sum_probs=44.8
Q ss_pred cCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 93 SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 93 ~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+..+.+....|-||-+.|..+- .++ |||.||.-||...|..+..||+||.+...
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip~---~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIPC---ETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhcchhHHHhhhhhheeecce---ecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3455666779999999998772 344 99999999999999999999999987654
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.91 E-value=5.2e-06 Score=66.26 Aligned_cols=51 Identities=25% Similarity=0.539 Sum_probs=39.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~~ 154 (415)
...|+||.+.|.++. +++ |||.|...||..|+.. +.+||+|+..+...+..
T Consensus 4 ~f~CpIt~~lM~dPV---i~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRDPV---ILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SSEE---EET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhCce---eCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence 568999999999984 556 9999999999999998 78899999888765543
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4e-06 Score=78.88 Aligned_cols=46 Identities=39% Similarity=0.906 Sum_probs=39.3
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL 146 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 146 (415)
..+...|+||++.|..+ .+++ |+|.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 34677999999999999 5677 9999999999998774457999993
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.9e-06 Score=70.48 Aligned_cols=49 Identities=33% Similarity=0.707 Sum_probs=36.1
Q ss_pred CCCcccccccccc------------cccce-EecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 99 QGLECAVCLSKFE------------DTEIL-RLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 99 e~~~C~ICle~~~------------~~~~~-~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
.-+.|+||...+- ..+.. ..-..|+|.||..||.+||+....||+|...
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 4568999877651 11222 2233599999999999999999999999664
No 37
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.82 E-value=1.4e-05 Score=59.28 Aligned_cols=42 Identities=24% Similarity=0.821 Sum_probs=31.9
Q ss_pred cccccccccccccceEecCccc-----cccchhHHHHHHhcC--CCCCccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEKH--SSCPLCR 145 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR 145 (415)
.|.||++ ...++...+.| |. |.+|..|+.+|+... .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 33444445677 75 899999999999654 4799995
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.77 E-value=1.7e-05 Score=57.48 Aligned_cols=34 Identities=32% Similarity=0.791 Sum_probs=21.0
Q ss_pred cccccccccccc-ceEecCccccccchhHHHHHHhcC
Q 041871 103 CAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEKH 138 (415)
Q Consensus 103 C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~ 138 (415)
|+||.+ |...+ .-++|+ |||+|+..||.+++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75543 446788 99999999999998753
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.65 E-value=1.3e-05 Score=63.75 Aligned_cols=50 Identities=32% Similarity=0.825 Sum_probs=23.6
Q ss_pred CCccccccccccccc-c-eEecC--ccccccchhHHHHHHhc---C--------CCCCccccccc
Q 041871 100 GLECAVCLSKFEDTE-I-LRLLP--KCKHAFHISCIDQWLEK---H--------SSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~~-~-~~~lp--~C~H~FH~~CI~~WL~~---~--------~sCPlCR~~v~ 149 (415)
..+|.||++.+..+. . ..+.+ .|++.||..||..||.. . ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999999876222 1 22332 69999999999999963 1 13999998774
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4e-05 Score=78.20 Aligned_cols=48 Identities=33% Similarity=0.948 Sum_probs=35.5
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcC---CCCCcccccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKV 148 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v 148 (415)
..|.||.+-+.....+.-+..|||+||..|+..|+... ..||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 48999955554444554444599999999999999863 4699998433
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=4.1e-05 Score=83.74 Aligned_cols=53 Identities=32% Similarity=0.799 Sum_probs=42.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~ 154 (415)
.+-..|++|-..+++- ++++|+|+||..||..-+. ++..||.|-..+.+.|..
T Consensus 641 K~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred HhceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 4567999999776554 3446999999999999875 567899999998877653
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.44 E-value=3.4e-05 Score=84.17 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=41.7
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
...|++|+..+.++......+ |+|.||..||..|-..-.+||+||..+..-.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 346888888877665554455 9999999999999988899999999876433
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.35 E-value=4.5e-05 Score=59.69 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=25.4
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCcc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIF 156 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~ 156 (415)
...|++|.+.++.+.. +..|.|+||..||..-+. ..||+|+.+.-..|...+
T Consensus 7 lLrCs~C~~~l~~pv~---l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILKEPVC---LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhcCCce---eccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence 4589999999988843 346999999999988544 459999988766555443
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=3.3e-05 Score=78.05 Aligned_cols=51 Identities=31% Similarity=0.652 Sum_probs=41.7
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA 150 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~ 150 (415)
...+..|+|||+.++.. +.++.|.|.||.+||..-+.. +..||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45677999999998665 455679999999999997764 6789999998764
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00018 Score=72.96 Aligned_cols=49 Identities=31% Similarity=0.775 Sum_probs=39.4
Q ss_pred cCCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+...+|.|||.+- ....+|| |.|. .|..|.+...-++..||+||.++..
T Consensus 288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3467999999984 4456888 9998 8999988865567889999998853
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00024 Score=73.07 Aligned_cols=49 Identities=35% Similarity=0.835 Sum_probs=38.1
Q ss_pred CCCccccccccccccc-ceEecCccccccchhHHHHHHhc--CCCCCccccc
Q 041871 99 QGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLK 147 (415)
Q Consensus 99 e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~ 147 (415)
.+.+||||++.+..+. ..+..+.|||.|..+||..||.+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3569999999997654 44445569999999999999953 2359999754
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00039 Score=70.94 Aligned_cols=54 Identities=30% Similarity=0.902 Sum_probs=40.7
Q ss_pred cCCCccccccccccccc----ceEecCccccccchhHHHHHHh--c-----CCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLE--K-----HSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~--~-----~~sCPlCR~~v~~~ 151 (415)
..+.+|.||++..-... ...++|+|.|.||..||..|-. + .+.||.||.....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 34679999999975544 1234677999999999999973 3 46799999876543
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00026 Score=53.76 Aligned_cols=45 Identities=29% Similarity=0.664 Sum_probs=33.4
Q ss_pred CcccccccccccccceEecCccccc-cchhHHHH-HHhcCCCCCccccccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQ-WLEKHSSCPLCRLKVN 149 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~-WL~~~~sCPlCR~~v~ 149 (415)
.+|.||+|.-.+. .+. .|||. .|..|-.+ |-..+..||+||.++.
T Consensus 8 dECTICye~pvds---VlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 6999999874443 233 49997 77788655 5446788999999874
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.92 E-value=0.00034 Score=69.57 Aligned_cols=55 Identities=25% Similarity=0.799 Sum_probs=44.3
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc-----------------------CCCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----------------------HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----------------------~~sCPlCR~~v~~~~~ 153 (415)
.....|.|||--|..++...+++ |.|.||..|+.++|.. ...||+||..+..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 34568999999999999888888 9999999999877631 2249999999876543
No 50
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=96.83 E-value=0.00017 Score=55.94 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=45.4
Q ss_pred ccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccc
Q 041871 177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNH 232 (415)
Q Consensus 177 ~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~H 232 (415)
.++|+|+.|+..||+|+..+|+.+|+ ++++|.+..+..+..+|.+.-+.|++
T Consensus 9 ~~lw~CL~Cg~~~C~~~~~~Ha~~H~----~~~~H~l~v~~~~~~i~C~~C~~~v~ 60 (63)
T PF02148_consen 9 SNLWLCLTCGYVGCGRYSNGHALKHY----KETGHPLAVSLSTGSIWCYACDDYVY 60 (63)
T ss_dssp SSEEEETTTS-EEETTTSTSHHHHHH----HHHT--EEEETTTTCEEETTTTEEEE
T ss_pred CceEEeCCCCcccccCCcCcHHHHhh----cccCCeEEEECCCCeEEEcCCCcEEe
Confidence 57999999999999999999999999 89999999999999999998877765
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00065 Score=67.64 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=37.5
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA 150 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~ 150 (415)
..+|+||+....-+ ..++ |+|.||..||.--... ..+|++||.+++.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 56999999987666 3455 9999999999885444 4569999999865
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.56 E-value=0.0011 Score=68.83 Aligned_cols=54 Identities=28% Similarity=0.706 Sum_probs=44.8
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
..+...|++|...+.++... + .|||.||..|+..|+..+..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhc
Confidence 35678999999999888542 2 499999999999999999999999888765433
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.56 E-value=0.00093 Score=68.70 Aligned_cols=50 Identities=28% Similarity=0.898 Sum_probs=39.9
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccCCCCCc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~~~~~~ 155 (415)
-|-||-|. ...+++-| |||..|..|+..|-.. ..+||.||..+...+...
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 59999876 45566777 9999999999999643 567999999998765543
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0012 Score=68.63 Aligned_cols=49 Identities=33% Similarity=0.861 Sum_probs=41.8
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
..+..|.||+..+..+. .+| |||.||..||++-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv---~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPV---VTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCc---ccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 45789999999988773 456 99999999999988877889999998864
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0014 Score=63.00 Aligned_cols=59 Identities=22% Similarity=0.568 Sum_probs=47.5
Q ss_pred cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCcccccccCCCCCc
Q 041871 95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~~v~~~~~~~ 155 (415)
.+++....|..|-..+..++.+++. |-|.||..|+..|-.. ...||.|-.++.+.....
T Consensus 45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence 3456678999999999999998765 9999999999999642 345999999887654333
No 56
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.00064 Score=69.09 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=32.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
...+.|.||++...+ ...+| |||.-| |..-- +....||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 346799999999666 46777 999966 54442 23456999998774
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.31 E-value=0.0023 Score=49.04 Aligned_cols=43 Identities=33% Similarity=0.696 Sum_probs=27.9
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPL 143 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPl 143 (415)
.-...|||.+..|.+|.. .. +|+|+|-+..|..|++. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~--s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVK--SK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEE--ES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcC--cC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 345799999999988843 23 59999999999999944 345998
No 58
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0023 Score=58.73 Aligned_cols=31 Identities=29% Similarity=0.696 Sum_probs=27.7
Q ss_pred CcCCCcccccccccccccceEecCccccccch
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHI 128 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~ 128 (415)
.+...+|.||||++..++.+..|| |-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 345679999999999999999999 9999996
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.99 E-value=0.0032 Score=59.54 Aligned_cols=46 Identities=22% Similarity=0.566 Sum_probs=38.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
-...|.||-.+|..+. ++ .|||.||..|...-++....|-+|-...
T Consensus 195 IPF~C~iCKkdy~spv---vt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESPV---VT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccchh---hh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 3568999999999883 33 4999999999998888888999997654
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.86 E-value=0.003 Score=63.62 Aligned_cols=54 Identities=28% Similarity=0.711 Sum_probs=44.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
....+|.+|-..|.+...+. .|-|.||..||...|....+||.|...+....+.
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCcccc
Confidence 45679999999998876542 5999999999999999999999998877655433
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.62 E-value=0.0043 Score=63.84 Aligned_cols=46 Identities=41% Similarity=0.904 Sum_probs=37.5
Q ss_pred CCccccccccccc-ccceEecCccccccchhHHHHHHhcC--CCCCcccc
Q 041871 100 GLECAVCLSKFED-TEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRL 146 (415)
Q Consensus 100 ~~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~ 146 (415)
+.-|..|-+.+.. ++.+.-+| |.|+||..|+...|.++ .+||.||.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4679999999854 34566788 99999999999998754 56999994
No 62
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.56 E-value=0.0045 Score=55.23 Aligned_cols=35 Identities=17% Similarity=0.614 Sum_probs=29.4
Q ss_pred CCcccccccccccccceEecCccc------cccchhHHHHHH
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCK------HAFHISCIDQWL 135 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~------H~FH~~CI~~WL 135 (415)
..+|.||++.+...+.++.++ |+ |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 569999999998866666666 66 899999999993
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.012 Score=57.40 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=48.5
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
...||||.+.+.+...+..|.+|||+|+.+|+.+.+.....||+|-.++...+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 4579999999999998888888999999999999988889999998888766543
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.012 Score=58.10 Aligned_cols=50 Identities=28% Similarity=0.514 Sum_probs=37.3
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~ 150 (415)
..+.+|++|-+.-..|-. .. +|+|+||..||..-+.. ..+||.|-..+.+
T Consensus 237 t~~~~C~~Cg~~PtiP~~--~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHV--IG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCee--ec-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 457799999998655532 33 49999999999885543 3579999877653
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.06 E-value=0.013 Score=68.05 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=48.1
Q ss_pred HHHHhhCCceeeec-CcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhc-----C-----CCCCcccccc
Q 041871 80 KAVIESLPFFRFSS-LKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----H-----SSCPLCRLKV 148 (415)
Q Consensus 80 ~~~i~~Lp~~~~~~-~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~-----~sCPlCR~~v 148 (415)
+....-||-+.... ....+.++.|.||+.+--.....+.|. |+|+||.+|...-|.+ . -+||+|+.++
T Consensus 3465 kNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3465 KNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 33444555554322 123456789999998876666777887 9999999998765543 1 2599999887
Q ss_pred cC
Q 041871 149 NA 150 (415)
Q Consensus 149 ~~ 150 (415)
..
T Consensus 3544 nH 3545 (3738)
T KOG1428|consen 3544 NH 3545 (3738)
T ss_pred hh
Confidence 54
No 66
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.76 E-value=0.029 Score=55.15 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=45.9
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 155 (415)
......|||+...|........+..|||+|...||..- .....||+|-.++...|..+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEE
Confidence 35567999999999766666666669999999999996 23557999999988766544
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.63 E-value=0.014 Score=48.68 Aligned_cols=33 Identities=30% Similarity=0.850 Sum_probs=26.9
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCID 132 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~ 132 (415)
.+...|++|-..+..+ ...+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence 3466899999999774 555777 99999999975
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.013 Score=58.47 Aligned_cols=46 Identities=24% Similarity=0.539 Sum_probs=38.2
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
...|-||...|..+. ..+|+|.||..|...-++....|++|-....
T Consensus 241 Pf~c~icr~~f~~pV----vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV----VTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccch----hhcCCceeehhhhccccccCCcceecccccc
Confidence 456999999999883 3359999999999888888889999977653
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.053 Score=54.88 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=37.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
.....||||+..-.++.-+- .-|-+||..||-.++..+..||+=-.+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34568999999987774332 258999999999999999999985444
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.17 E-value=0.023 Score=60.54 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=38.1
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh-----cCCCCCcccccccCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRLKVNAE 151 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v~~~ 151 (415)
..+..+|.+|-+.-++. +.. .|.|.||.-||..+.. .+-+||+|-..+.-+
T Consensus 533 nk~~~~C~lc~d~aed~---i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh---Hhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34567999999885554 334 3999999999988864 256899997766543
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.09 E-value=0.022 Score=55.37 Aligned_cols=45 Identities=24% Similarity=0.664 Sum_probs=33.3
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.|..|.-.-. ++...++. |.|+||..|...- ....||+|+..+..
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeee
Confidence 5777766544 66776676 9999999997763 22389999998654
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.02 E-value=0.03 Score=56.07 Aligned_cols=47 Identities=30% Similarity=0.607 Sum_probs=36.3
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccc-cccC
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRL-KVNA 150 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~-~v~~ 150 (415)
..|+.|-..+..+.+ ++.|+|.||.+||..-|. ....||.|.. .+..
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 689999988877743 356999999999998654 5678999944 4433
No 73
>PHA03096 p28-like protein; Provisional
Probab=93.89 E-value=0.027 Score=56.33 Aligned_cols=37 Identities=30% Similarity=0.743 Sum_probs=29.0
Q ss_pred Cccccccccccccc----ceEecCccccccchhHHHHHHhc
Q 041871 101 LECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLEK 137 (415)
Q Consensus 101 ~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~ 137 (415)
..|.||++...... .-..|+.|.|.||..|+..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 58999999875432 22367789999999999999753
No 74
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.83 E-value=0.049 Score=40.01 Aligned_cols=41 Identities=37% Similarity=1.036 Sum_probs=26.4
Q ss_pred ccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCcc
Q 041871 103 CAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlC 144 (415)
|-||++.-.....+ +.| .|.= ..|..|+..|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999987766533 455 2333 7899999999974 4569987
No 75
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.83 E-value=0.056 Score=49.65 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=35.6
Q ss_pred CcCCCcccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCcccccccC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLCRLKVNA 150 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlCR~~v~~ 150 (415)
+..+..|-||.+.... . ..| .|.. ..|..|+..|+.. ...|++|.+++..
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3456799999988532 2 234 2444 5699999999975 4469999987754
No 76
>PHA02862 5L protein; Provisional
Probab=93.82 E-value=0.045 Score=49.56 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=34.3
Q ss_pred CCcccccccccccccceEecCccc-----cccchhHHHHHHhc--CCCCCcccccccC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEK--HSSCPLCRLKVNA 150 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~sCPlCR~~v~~ 150 (415)
...|=||.+.-++. .-| |. ...|..|+.+|+.. +..||+|+.++.-
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35899999985433 244 54 46899999999964 4569999998753
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.03 Score=58.13 Aligned_cols=47 Identities=23% Similarity=0.685 Sum_probs=37.7
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCcccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~ 146 (415)
....|.||++..........+| |+|+||..|+..++.. .-.||-|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4568999999988778888898 9999999999998753 224776643
No 78
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.048 Score=55.73 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=40.7
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.++..|+||+.. +......| |+|.-|..||.+-+...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 567899999876 44445677 99999999999999999999999887754
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.21 E-value=0.071 Score=39.63 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=21.9
Q ss_pred ccccccccccccceEecC-ccccccchhHHHHHHh-cCCCCCcccccc
Q 041871 103 CAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLE-KHSSCPLCRLKV 148 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 148 (415)
|++|.++++..+.- ..| .|++..|..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~-~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKD-FYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT---SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCc-cccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 79999999544422 333 4889999999888765 366799999864
No 80
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.11 E-value=0.047 Score=61.05 Aligned_cols=51 Identities=27% Similarity=0.746 Sum_probs=39.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc-------CCCCCcccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-------HSSCPLCRLKV 148 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v 148 (415)
....+|.||++.+.....+--...|-|+||..||..|-.. .-.||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3467999999999877766444458899999999999753 12499998533
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.05 E-value=0.049 Score=41.56 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=33.3
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
..|..|... +....++| |+|..+..|..-+ +-+.||.|-.++...+
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 355555544 33445777 9999999998776 5577999998887654
No 82
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=92.73 E-value=0.034 Score=40.61 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=31.7
Q ss_pred cccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhh
Q 041871 176 NIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEA 217 (415)
Q Consensus 176 ~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~ 217 (415)
..++|+|+.|++++|+|+..+|+..|+ .+++|.+....
T Consensus 8 ~~~l~~CL~C~~~~c~~~~~~h~~~H~----~~t~H~~~~~~ 45 (50)
T smart00290 8 IENLWLCLTCGQVGCGRYQLGHALEHF----EETGHPLVVKL 45 (50)
T ss_pred cCCeEEecCCCCcccCCCCCcHHHHHh----hhhCCCEEEEc
Confidence 345999999999999999999999999 66777666544
No 83
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.044 Score=54.70 Aligned_cols=42 Identities=26% Similarity=0.637 Sum_probs=31.5
Q ss_pred CCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
..-|+||++. +.....|+ |||. -|..|-... ..||+||..+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 5579999986 56677888 9997 566675443 47999998764
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.54 E-value=0.11 Score=37.60 Aligned_cols=41 Identities=22% Similarity=0.637 Sum_probs=23.2
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHhcCC--CCCcc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--SCPLC 144 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--sCPlC 144 (415)
|.+|.+....+...... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788877666543222 4888999999999987655 69988
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.35 E-value=0.13 Score=52.39 Aligned_cols=57 Identities=21% Similarity=0.446 Sum_probs=40.7
Q ss_pred cCCCcccccccccccccce-EecCccccccchhHHHHHHh-cCCCCCcccccccCCCCCc
Q 041871 98 KQGLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~~ 155 (415)
++++-|+.|++.++..++- .-+| ||-..|..|...--+ -+..||-||.....++...
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~ 70 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY 70 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence 4555699999999877654 3344 998888888655322 2457999999888776554
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=0.14 Score=57.34 Aligned_cols=41 Identities=24% Similarity=0.769 Sum_probs=32.3
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
..|..|--.++-|.- .- .|||.||.+|+. .....||-|+..
T Consensus 841 skCs~C~~~LdlP~V--hF-~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFV--HF-LCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCcccccee--ee-ecccHHHHHhhc---cCcccCCccchh
Confidence 589999999887742 22 399999999998 355679999873
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=0.035 Score=57.27 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=42.6
Q ss_pred CCcccccccccccc-cceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 100 GLECAVCLSKFEDT-EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 100 ~~~C~ICle~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
...|+||.+.++.. +.+..+- |||.+|..||.+||.....||.|+..+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45899999999776 5665565 99999999999999998889999998864
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.49 E-value=0.14 Score=56.86 Aligned_cols=47 Identities=23% Similarity=0.729 Sum_probs=35.7
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccCCC
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNAED 152 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~~~ 152 (415)
..|.||++ .+....++ |+|.||..|+..-+.. ...||+||..+...+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 34444555 9999999999886543 235999999886544
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.22 Score=46.69 Aligned_cols=30 Identities=30% Similarity=0.933 Sum_probs=23.8
Q ss_pred ccccccchhHHHHHHhc-----C------CCCCcccccccC
Q 041871 121 KCKHAFHISCIDQWLEK-----H------SSCPLCRLKVNA 150 (415)
Q Consensus 121 ~C~H~FH~~CI~~WL~~-----~------~sCPlCR~~v~~ 150 (415)
.||.-||.-|+..||.. + ..||.|-.++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999963 1 139999877654
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.81 E-value=0.13 Score=60.05 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=38.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
+...|.||++.+.....+. .|||.+|..|+..|+..+..||.|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4558999999987543332 3999999999999999999999998543
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.73 E-value=0.4 Score=44.14 Aligned_cols=54 Identities=26% Similarity=0.640 Sum_probs=35.5
Q ss_pred CCCcccccccccccccceE---------ecCccccc-cchhHHHHHHhc-------------------------------
Q 041871 99 QGLECAVCLSKFEDTEILR---------LLPKCKHA-FHISCIDQWLEK------------------------------- 137 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~---------~lp~C~H~-FH~~CI~~WL~~------------------------------- 137 (415)
++.+||||||.-.+..-+. -.- |+-. -|..|++++-+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 3569999999866554332 111 5533 478999997531
Q ss_pred CCCCCcccccccCCCC
Q 041871 138 HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 138 ~~sCPlCR~~v~~~~~ 153 (415)
...||+||..|..+..
T Consensus 80 ~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTV 95 (162)
T ss_pred cccCccccCceeceEE
Confidence 1249999999976644
No 92
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=0.33 Score=48.13 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=37.1
Q ss_pred CCcccccccccccccce---EecCccccccchhHHHHHHhcC-CCCCcccccc
Q 041871 100 GLECAVCLSKFEDTEIL---RLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKV 148 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~---~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 148 (415)
.+.|-||-++|...+.. +.| +|||.||..|+.+-+... ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 35899999999877422 445 499999999998876543 3599999985
No 93
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.86 E-value=0.53 Score=35.88 Aligned_cols=35 Identities=31% Similarity=0.830 Sum_probs=30.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
....|++|-+.|.+++.+.+.|.|+-.+|+.|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45689999999998888889999999999999544
No 94
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.58 E-value=0.51 Score=48.36 Aligned_cols=65 Identities=25% Similarity=0.521 Sum_probs=42.6
Q ss_pred HHHHhhCCceeeecCcC-CcCCCcccccccccccccceEecCccccccchhHHHH--HHhcCCCCCcccccc
Q 041871 80 KAVIESLPFFRFSSLKG-SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ--WLEKHSSCPLCRLKV 148 (415)
Q Consensus 80 ~~~i~~Lp~~~~~~~~~-~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~--WL~~~~sCPlCR~~v 148 (415)
+..+..-|...-++.++ ..+...|.||-+.+.- ..++| |+|..|--|-.+ -|-..+.||+||..-
T Consensus 40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 40 KNNLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 33444445544433333 3455689999887533 34677 999999889655 355678999999854
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.22 E-value=0.5 Score=48.82 Aligned_cols=32 Identities=28% Similarity=0.878 Sum_probs=23.0
Q ss_pred cccccchhHHHHHHhc-------------CCCCCcccccccCCCC
Q 041871 122 CKHAFHISCIDQWLEK-------------HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 122 C~H~FH~~CI~~WL~~-------------~~sCPlCR~~v~~~~~ 153 (415)
|.-..|.+|+-+|+.. +-.||.||+.+.-.|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 3445678999999842 3359999998876553
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.23 Score=54.26 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=34.1
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
+-..|+||+..|-...-.-+.+.|||..|..|+..- .+.+|| |+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 345899999988766544333459999999999886 457899 6543
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.09 E-value=0.47 Score=47.37 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=36.9
Q ss_pred CCcccccccccccccce-EecCccccccchhHHHHHHhcCCCCCcccc
Q 041871 100 GLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLEKHSSCPLCRL 146 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 146 (415)
...||||.+.+-..... ..++ |||.-|..|+......+-+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 34599999998666544 3455 9999999999998777788999987
No 98
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=0.36 Score=48.75 Aligned_cols=43 Identities=33% Similarity=0.773 Sum_probs=29.1
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
.|--|--.+ ..-.+.+| |+|+||.+|-.. ...+.||.|-..|.
T Consensus 92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 455564332 23346788 999999999655 24678999976654
No 99
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=0.79 Score=45.91 Aligned_cols=54 Identities=19% Similarity=0.605 Sum_probs=37.9
Q ss_pred cccccccc-cccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCCCc
Q 041871 102 ECAVCLSK-FEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 102 ~C~ICle~-~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~~~ 155 (415)
.||+|... |-.++.......|+|..|..|++.-+..+ ..||.|-..+...+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 59999866 34444332333499999999999977654 46999987776655544
No 100
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.79 E-value=0.54 Score=46.01 Aligned_cols=54 Identities=24% Similarity=0.617 Sum_probs=39.3
Q ss_pred CCCcccccccc-ccccc-ceEecCccccccchhHHHHHHhcCC-CCC--cccccccCCC
Q 041871 99 QGLECAVCLSK-FEDTE-ILRLLPKCKHAFHISCIDQWLEKHS-SCP--LCRLKVNAED 152 (415)
Q Consensus 99 e~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~-sCP--lCR~~v~~~~ 152 (415)
.+..||||..+ |-.|+ ++.+-|.|-|..|..|+++-+...+ .|| -|-.-+....
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 35589999876 33444 4555667999999999999887654 699 7977665433
No 101
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=0.48 Score=50.83 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHhcCCCCCc-ccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCC-----CCCccccccCC
Q 041871 131 IDQWLEKHSSCPL-CRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRF-----SIGSSFRKNKE 204 (415)
Q Consensus 131 I~~WL~~~~sCPl-CR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy-----~~Ghafrh~~~ 204 (415)
...|-..-.+||. |........... +.+.....++-..+||+|..||..||||- ..|||-.||
T Consensus 145 ~~~w~~E~~tC~H~~n~~~~s~~~~n---------i~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY-- 213 (749)
T COG5207 145 RVLWRDEEVTCVHGCNEGPSSIEMGN---------IGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHY-- 213 (749)
T ss_pred hhhhhhhcccccccCCCCCCcccccc---------cCCceeccccchhceEEEEecCcccccceeecCCCCcchhhhh--
Confidence 3456656677865 433322211111 11233334677889999999999999984 358999999
Q ss_pred CChhhhHHHhhhhcC
Q 041871 205 PNKEEELLIQEEAVD 219 (415)
Q Consensus 205 ~~ke~~~l~~~e~~~ 219 (415)
++++|.++-.+.+
T Consensus 214 --~~t~Hplavkl~S 226 (749)
T COG5207 214 --EETQHPLAVKLPS 226 (749)
T ss_pred --hccCCceEEEccc
Confidence 7777887766654
No 102
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=3.1 Score=43.36 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=39.5
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCC---CCCcccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLCRLKV 148 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v 148 (415)
.....|||=.+.-.+......+. |||+...+-+.+-.+.+. .||.|=...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 45679999888877777777787 999999999999766554 499994433
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=0.61 Score=44.71 Aligned_cols=39 Identities=31% Similarity=0.752 Sum_probs=28.5
Q ss_pred ccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
|-.|-+. +..+.++| |.|. +|..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 7777665 66688888 9987 77788543 256999987653
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=80.49 E-value=1.2 Score=45.15 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=35.0
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
..+-.+||||.+.+..+..- .+ =||.-|..|-.+ ....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~Q--C~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQ--CD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccccee--cC-CCcEehhhhhhh---hcccCCccccccc
Confidence 34567999999999888322 11 269999888654 4677999999886
No 105
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.44 E-value=0.77 Score=52.01 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=27.7
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL 135 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL 135 (415)
..+..|.+|.-.+... .-.+-| |||.||..||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 3467999999887554 344666 99999999998753
No 106
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.75 E-value=1 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.920 Sum_probs=21.3
Q ss_pred ccccccchhHHHHHHhcCCCCCc
Q 041871 121 KCKHAFHISCIDQWLEKHSSCPL 143 (415)
Q Consensus 121 ~C~H~FH~~CI~~WL~~~~sCPl 143 (415)
.|+|+-|..|...|+..+..||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999986
No 107
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.34 E-value=1.1 Score=50.39 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCcccccccccccccc---eEecCccccccchhHHHHHHhc------CCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEI---LRLLPKCKHAFHISCIDQWLEK------HSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~---~~~lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v~~~ 151 (415)
...+|.||.-++..++. +-.+..|+|.||..||..|+.+ +-.|+.|...|..+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 45688888888877432 2222359999999999999853 34589998887654
No 108
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.64 E-value=1.3 Score=43.75 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=36.7
Q ss_pred CCcccccccccccccc-eEecCccc-----cccchhHHHHHHh--cCCCCCcccccccCC
Q 041871 100 GLECAVCLSKFEDTEI-LRLLPKCK-----HAFHISCIDQWLE--KHSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~-~~~lp~C~-----H~FH~~CI~~WL~--~~~sCPlCR~~v~~~ 151 (415)
+..|-||.+....... ....| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998754432 23444 54 5689999999987 456799998866543
No 109
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.63 E-value=0.7 Score=51.25 Aligned_cols=47 Identities=32% Similarity=0.800 Sum_probs=36.3
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc---CCCCCcccccccC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK---HSSCPLCRLKVNA 150 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~sCPlCR~~v~~ 150 (415)
..+|+||+..+..+ .+.+|.|.|+..|+..-|.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 56999999999888 33359999999998774433 4469999977654
No 110
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=74.55 E-value=6.2 Score=28.03 Aligned_cols=28 Identities=21% Similarity=0.619 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041871 26 SLAVVIGILCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~r~c~r~ 54 (415)
.++++.|+++.+.++.+..++|+ +|.++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~Ya-Ccykk 32 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYA-CCYKK 32 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHcc
Confidence 45666676666666555555544 44443
No 111
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=73.87 E-value=1.3 Score=48.92 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=36.3
Q ss_pred ccccCcccccccccccccCCCCCC------CCccccccCCCChhhhHHHhhhhcC
Q 041871 171 RREDSNIELFIQREEEHRGSSRFS------IGSSFRKNKEPNKEEELLIQEEAVD 219 (415)
Q Consensus 171 ~~~~~~~el~i~~~~g~~G~gRy~------~Ghafrh~~~~~ke~~~l~~~e~~~ 219 (415)
..++-..+||.|..||.+||||-. .|||..|| ++++|.++-.+++
T Consensus 183 s~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HY----r~tghPLaVKLgs 233 (763)
T KOG0944|consen 183 SKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHY----RETGHPLAVKLGS 233 (763)
T ss_pred cccCcccceEEEeccCceeecceeecCCCCCcchHHhh----hhcCCceEEEecc
Confidence 347788999999999999999853 47999999 7777777665553
No 112
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=0.7 Score=51.56 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=63.3
Q ss_pred cccccchhHHHHHHh-----cCCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCC-CCC
Q 041871 122 CKHAFHISCIDQWLE-----KHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSR-FSI 195 (415)
Q Consensus 122 C~H~FH~~CI~~WL~-----~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gR-y~~ 195 (415)
|.|+=+.-=+..-.. ....|-.|.......+.- ...+-+-...||.|..||..|||| --.
T Consensus 45 C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~--------------s~~~~~~~~~iWLCLkCG~q~CG~~~~~ 110 (877)
T KOG1873|consen 45 CQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGG--------------SSDQFEFDNAIWLCLKCGYQGCGRNSES 110 (877)
T ss_pred cchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCC--------------CccccccccceeeecccCCeeeCCCccc
Confidence 888755433332211 124599998776555431 111223356899999999999999 567
Q ss_pred CccccccCCCChhhhHHHhhhhcCCCchhhhhcc
Q 041871 196 GSSFRKNKEPNKEEELLIQEEAVDGDDDERILHK 229 (415)
Q Consensus 196 Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~ 229 (415)
-|+..||+.. +-+.|++-.-..+...|.|.=|.
T Consensus 111 ~halkH~~~~-r~~~Hclvin~~n~~~WCy~Cd~ 143 (877)
T KOG1873|consen 111 QHALKHFLTP-RSEPHCLVINLINWLIWCYSCDA 143 (877)
T ss_pred chhhhhhccc-CCCCeeEEEEeeeeeeEEEeccc
Confidence 8999999766 66788888877888888886443
No 113
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=73.02 E-value=2.6 Score=37.87 Aligned_cols=53 Identities=19% Similarity=0.546 Sum_probs=36.1
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH-HH--hcCCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ-WL--EKHSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~-WL--~~~~sCPlCR~~v~~~ 151 (415)
.-.+|.||.|.-.+..-+.----||-..|.-|--. |- ..++.||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45699999998544432221114998899888665 63 2367899999988654
No 114
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=72.60 E-value=2.2 Score=48.19 Aligned_cols=53 Identities=23% Similarity=0.651 Sum_probs=38.3
Q ss_pred cCCCcccccccccccccceEecC-ccc---cccchhHHHHHHhc--CCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLP-KCK---HAFHISCIDQWLEK--HSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp-~C~---H~FH~~CI~~WL~~--~~sCPlCR~~v~~~ 151 (415)
.++..|-||..+=..++.+ .-| +|. ...|.+|+..|+.- ...|-+|.+++.-+
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3457999999887666655 344 343 35899999999974 34599999987543
No 115
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.79 E-value=2 Score=44.88 Aligned_cols=38 Identities=26% Similarity=0.680 Sum_probs=27.5
Q ss_pred cCCCcccccccccccc-cceEecCccccccchhHHHHHHh
Q 041871 98 KQGLECAVCLSKFEDT-EILRLLPKCKHAFHISCIDQWLE 136 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~-~~~~~lp~C~H~FH~~CI~~WL~ 136 (415)
....+|.||......+ .... ..+|+|.||.+|+.+.+.
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhh
Confidence 3466999999444333 4444 345999999999998875
No 116
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.35 E-value=3.4 Score=40.86 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCcc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIF 156 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~ 156 (415)
...|||---+|...-....+..|||+|-...+.+. ...+|++|...+...+..+.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEee
Confidence 45799887777665555556669999998888775 46789999999888776553
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=71.35 E-value=1.8 Score=45.78 Aligned_cols=34 Identities=32% Similarity=0.747 Sum_probs=28.6
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHh
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~ 136 (415)
+...|+||..-|.++ ++|| |+|..|..|...-+.
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhcc
Confidence 567899999999888 5677 999999999876543
No 118
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=69.96 E-value=1.7 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.801 Sum_probs=21.4
Q ss_pred cc-cccchhHHHHHHhcCCCCCcccccccC
Q 041871 122 CK-HAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 122 C~-H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
|. |..|..|+...|.....||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 65 999999999999888899999998764
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.24 E-value=2.7 Score=42.34 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=25.2
Q ss_pred cccccchhHHHHHHh-------------cCCCCCcccccccCCCCC
Q 041871 122 CKHAFHISCIDQWLE-------------KHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 122 C~H~FH~~CI~~WL~-------------~~~sCPlCR~~v~~~~~~ 154 (415)
|....|..|+-+|+. .+-+||+||+.+.-.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 566788999999874 244699999988766554
No 120
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.71 E-value=2.4 Score=42.00 Aligned_cols=55 Identities=25% Similarity=0.652 Sum_probs=36.5
Q ss_pred CcCCCcccccccccccccce-EecCccc-----cccchhHHHHHHhcC--------CCCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEIL-RLLPKCK-----HAFHISCIDQWLEKH--------SSCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~-~~lp~C~-----H~FH~~CI~~WL~~~--------~sCPlCR~~v~~~~ 152 (415)
...+..|-||+..=++.... =+-| |. |=.|..|+..|+..+ -+||.|+.....--
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 34456899999875544322 1233 53 679999999998532 24999998765433
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=68.44 E-value=1.9 Score=47.32 Aligned_cols=45 Identities=31% Similarity=0.769 Sum_probs=28.1
Q ss_pred cCCCcccccccc-----cccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871 98 KQGLECAVCLSK-----FEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL 146 (415)
Q Consensus 98 ~e~~~C~ICle~-----~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 146 (415)
.....|.+|... |+. +.++..-.|+++||..|+.. ....||.|-.
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~-~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFET-RNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred cCeeeeeeccCCCccccccc-ccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 345678888322 222 22333334999999999665 4555999944
No 122
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=67.78 E-value=1.7 Score=45.88 Aligned_cols=46 Identities=9% Similarity=-0.091 Sum_probs=35.0
Q ss_pred ccCcccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCc
Q 041871 173 EDSNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDD 222 (415)
Q Consensus 173 ~~~~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~ 222 (415)
..++.++|.|+.||...+||...+||+.|+ ++++|.+...+.+.++
T Consensus 22 ~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~----~~~~H~~~v~l~t~~~ 67 (440)
T cd02669 22 SLSNLNVYACLVCGKYFQGRGKGSHAYTHS----LEDNHHVFLNLETLKF 67 (440)
T ss_pred cCCCCcEEEEcccCCeecCCCCCcHHHHHh----hccCCCEEEECCCCCE
Confidence 346778999999998888888899999999 5566666555554443
No 123
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.96 E-value=2.6 Score=40.65 Aligned_cols=46 Identities=22% Similarity=0.534 Sum_probs=36.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
.-..|.+|....-.+.. ...|+-.+|..|+...++....||.|...
T Consensus 180 nlk~Cn~Ch~LvIqg~r---Cg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIR---CGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHHhHhHHHhheeec---cCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 44589999988655532 22488889999999999998899999543
No 124
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.10 E-value=5 Score=38.12 Aligned_cols=42 Identities=40% Similarity=0.899 Sum_probs=29.8
Q ss_pred CCCcccccccc-----cccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871 99 QGLECAVCLSK-----FEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~-----~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 146 (415)
.+..|-+|-+. |+. +.+...+.|+-+||..|... ..||-|-.
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 35688888753 223 24556678999999999662 67999943
No 125
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.44 E-value=3.6 Score=44.73 Aligned_cols=47 Identities=32% Similarity=0.842 Sum_probs=38.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
....|.||+... ..+..+ |. |..|+..|+..+..||+|+..+..++.
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 456899999998 445555 87 889999999999999999988765544
No 126
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.34 E-value=13 Score=32.99 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=9.7
Q ss_pred CCcccch--hhhHHHHHHHHHHHH
Q 041871 20 VSNFKPS--LAVVIGILCVMFILT 41 (415)
Q Consensus 20 ~~~f~~~--i~IvIgIL~vi~ll~ 41 (415)
++.|.-. +.|++|+++.+++++
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHH
T ss_pred ccCccccceeehhHHHHHHHHHHH
Confidence 3455443 344455555444433
No 127
>PF15050 SCIMP: SCIMP protein
Probab=63.32 E-value=8.3 Score=34.11 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=19.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041871 22 NFKPSLAVVIGILCVMFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 22 ~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r~~~ 56 (415)
+||.+++ ++|+++-+++.+|+++.+++..|.+.
T Consensus 7 nFWiiLA--VaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 7 NFWIILA--VAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred chHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4555444 34555556667777777776655543
No 128
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.98 E-value=7 Score=29.01 Aligned_cols=42 Identities=26% Similarity=0.613 Sum_probs=19.4
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRL 146 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 146 (415)
..|+|....+..+. +.. .|.|.-|- =+..||.. .-.||+|.+
T Consensus 3 L~CPls~~~i~~P~--Rg~-~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV--RGK-NCKHLQCF-DLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEE--EET-T--SS--E-EHHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCc--cCC-cCcccceE-CHHHHHHHhhccCCeECcCCcC
Confidence 47999998887764 334 39987321 13445542 225999975
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.41 E-value=5 Score=26.04 Aligned_cols=23 Identities=26% Similarity=0.662 Sum_probs=12.7
Q ss_pred cccccccccccccceEecCcccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAF 126 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~F 126 (415)
.||-|...+. ......|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4666666652 2233455566666
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.71 E-value=8.1 Score=43.48 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=30.0
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPL 143 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPl 143 (415)
..|.+|-..+..- ....+.|+|.=|..|+..|+...+.||.
T Consensus 780 ~~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeee--EeecccccccccHHHHHHHHhcCCCCcc
Confidence 3678886554221 1234469999999999999998888876
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=57.30 E-value=7.3 Score=29.39 Aligned_cols=42 Identities=38% Similarity=0.807 Sum_probs=20.8
Q ss_pred cccccccccccc------ceEecCccccccchhHHHHHH-hcCCCCCccc
Q 041871 103 CAVCLSKFEDTE------ILRLLPKCKHAFHISCIDQWL-EKHSSCPLCR 145 (415)
Q Consensus 103 C~ICle~~~~~~------~~~~lp~C~H~FH~~CI~~WL-~~~~sCPlCR 145 (415)
|--|+..|..+. .....|.|++.||.+| +.+. ..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 555666665542 3445678999999999 3332 1234699884
No 132
>PF15102 TMEM154: TMEM154 protein family
Probab=55.93 E-value=9.2 Score=34.89 Aligned_cols=9 Identities=22% Similarity=0.896 Sum_probs=5.9
Q ss_pred hHHHHHHhc
Q 041871 129 SCIDQWLEK 137 (415)
Q Consensus 129 ~CI~~WL~~ 137 (415)
.=|++|+..
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 457788754
No 133
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=55.32 E-value=14 Score=41.07 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=20.5
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 041871 19 TVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLF 58 (415)
Q Consensus 19 ~~~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r~~~~~ 58 (415)
...|+|.++++++.++++++ +|+++++++|++....+
T Consensus 265 ~~~NlWII~gVlvPv~vV~~---Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLL---IIIILYWKLCRKNKLEF 301 (684)
T ss_pred CCCCeEEEehHhHHHHHHHH---HHHHHHHHHhcccccCC
Confidence 34777777776555444433 33445556676655433
No 134
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.26 E-value=15 Score=32.18 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=32.7
Q ss_pred CCccccccccccccc----------ceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871 100 GLECAVCLSKFEDTE----------ILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145 (415)
Q Consensus 100 ~~~C~ICle~~~~~~----------~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR 145 (415)
...|--|+..|.... .....++|++.||.+|=.-+-..-..||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999886431 1234667999999999555545556799995
No 135
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=52.42 E-value=12 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=24.2
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
.|..|-+.+...+..... =+..||..| ..|..|...+
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 378888887766333222 367888877 4677777655
No 137
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=51.58 E-value=8.1 Score=26.84 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=17.2
Q ss_pred Ccccccccccccccc-------eEecCccccccc
Q 041871 101 LECAVCLSKFEDTEI-------LRLLPKCKHAFH 127 (415)
Q Consensus 101 ~~C~ICle~~~~~~~-------~~~lp~C~H~FH 127 (415)
.+||-|...|..++. ....+.|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888866553 223445777764
No 138
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.33 E-value=9.8 Score=40.32 Aligned_cols=54 Identities=24% Similarity=0.617 Sum_probs=37.8
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--------CCCC--cccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--------SSCP--LCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--------~sCP--lCR~~v~~~~~~ 154 (415)
.....|-||.+.+.. .+..+. |+|.||..|....+..+ .+|| -|...+......
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 456799999999876 344455 99999999999988541 2454 476666554433
No 139
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=49.19 E-value=10 Score=32.10 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=16.4
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHH
Q 041871 20 VSNFKPSLAVVIGILCVMFILTFILLL 46 (415)
Q Consensus 20 ~~~f~~~i~IvIgIL~vi~ll~~Ill~ 46 (415)
...+||+++..-|++++++++++++.+
T Consensus 38 ~~ayWpyLA~GGG~iLilIii~Lv~CC 64 (98)
T PF07204_consen 38 FVAYWPYLAAGGGLILILIIIALVCCC 64 (98)
T ss_pred HHhhhHHhhccchhhhHHHHHHHHHHh
Confidence 356788887776666655554444433
No 140
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=47.03 E-value=12 Score=25.92 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=17.1
Q ss_pred Ccccccccccccccce-------EecCccccccc
Q 041871 101 LECAVCLSKFEDTEIL-------RLLPKCKHAFH 127 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~-------~~lp~C~H~FH 127 (415)
.+|+-|...|..++.. ...++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 3688888888766531 23445777764
No 141
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.52 E-value=35 Score=30.25 Aligned_cols=20 Identities=10% Similarity=0.542 Sum_probs=9.1
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 041871 23 FKPSLAVVIGILCVMFILTF 42 (415)
Q Consensus 23 f~~~i~IvIgIL~vi~ll~~ 42 (415)
...+++++.||+++++++.+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 33444444455444444443
No 142
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=46.22 E-value=30 Score=29.07 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=12.0
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHH
Q 041871 21 SNFKPSLAVVIGILCVMFILTFILL 45 (415)
Q Consensus 21 ~~f~~~i~IvIgIL~vi~ll~~Ill 45 (415)
.+-++++.+-+.+++.+|++.+|++
T Consensus 27 ~n~~~~Lgm~~lvI~~iFil~Vilw 51 (94)
T PF05393_consen 27 VNNWPNLGMWFLVICGIFILLVILW 51 (94)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHH
Confidence 4455555554444444444444433
No 143
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=45.83 E-value=11 Score=37.69 Aligned_cols=48 Identities=27% Similarity=0.646 Sum_probs=34.7
Q ss_pred CcccccccccccccceEe---cCccccccchhHHHHHHh-c--------CCCCCcccccc
Q 041871 101 LECAVCLSKFEDTEILRL---LPKCKHAFHISCIDQWLE-K--------HSSCPLCRLKV 148 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~---lp~C~H~FH~~CI~~WL~-~--------~~sCPlCR~~v 148 (415)
.+|-+|..++...+..+. -+.|+-.+|..|+..-+. . ...||.|+..+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999965554433 236888999999988442 2 23599998854
No 144
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.99 E-value=20 Score=28.40 Aligned_cols=34 Identities=9% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041871 20 VSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR 53 (415)
Q Consensus 20 ~~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r 53 (415)
.-.|.|+++++|.|..+++++.+..++.+.|++.
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 3568888887777665555555544555555544
No 145
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=44.56 E-value=12 Score=26.94 Aligned_cols=43 Identities=26% Similarity=0.506 Sum_probs=28.1
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHh------cCCCCCccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE------KHSSCPLCR 145 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~------~~~sCPlCR 145 (415)
.|.||.... ....++.-..|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388999843 3444445556999999999865322 133588875
No 146
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=43.72 E-value=21 Score=34.57 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=13.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 041871 22 NFKPSLAVVIGILCVMFILTFILLLYAKFCH 52 (415)
Q Consensus 22 ~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~ 52 (415)
..+..++||.|+++++++++ +..++++|+
T Consensus 36 ~~~I~iaiVAG~~tVILVI~--i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIF--IVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHH--HHHHHHHHh
Confidence 34444444555444443332 333446565
No 147
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.44 E-value=8.8 Score=43.39 Aligned_cols=43 Identities=16% Similarity=0.475 Sum_probs=30.3
Q ss_pred CCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcc
Q 041871 100 GLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLC 144 (415)
Q Consensus 100 ~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlC 144 (415)
...|.-|.+..... ..+.+.- |+|.||..|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 44899999887533 3455565 999999999987654443 6555
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=43.34 E-value=12 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=18.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 134 (415)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3456999999999654433344469999998886543
No 149
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=11 Score=39.52 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCcccccccccccccc--eEecCccccccchhHHHHHHhcCCCCCcc
Q 041871 100 GLECAVCLSKFEDTEI--LRLLPKCKHAFHISCIDQWLEKHSSCPLC 144 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~--~~~lp~C~H~FH~~CI~~WL~~~~sCPlC 144 (415)
-..|+.|.-.++.... ..... |+|.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4578888777654443 24455 99999999999997776767554
No 150
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.12 E-value=57 Score=33.55 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=34.7
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCC---CCCcc
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLC 144 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---sCPlC 144 (415)
....-..|||--+.-.+......+. |||+.-..-++.--+... .||.|
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cccceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 3455678999777765555555666 999999999888654432 49999
No 151
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.57 E-value=22 Score=36.58 Aligned_cols=61 Identities=21% Similarity=0.457 Sum_probs=37.1
Q ss_pred hhCCceeeecCcCCc--CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871 84 ESLPFFRFSSLKGSK--QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145 (415)
Q Consensus 84 ~~Lp~~~~~~~~~~~--e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR 145 (415)
.-+|...|.+..... ....|-.|.+........+ ...|.|.||.+|=.--=..-..||-|.
T Consensus 312 hL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~-C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 312 HLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYR-CESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hhcCCcchhhccccccCCCcceeeeccccCCCCcEE-chhccceeeccchHHHHhhhhcCCCcC
Confidence 334555554433322 3445999977766655544 445999999999332212334699996
No 152
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.64 E-value=27 Score=35.79 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=34.3
Q ss_pred CCcccccccccccccceEecC-ccccccchhHHHHHHhcCCCCCcccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
...|+||.+.....+.. .+| .|++.-|..|+..-...+..||.||.+.
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCcc
Confidence 46899999987544432 233 3787777778777666788899999544
No 153
>PLN02189 cellulose synthase
Probab=37.31 E-value=28 Score=40.82 Aligned_cols=50 Identities=18% Similarity=0.491 Sum_probs=34.8
Q ss_pred CCccccccccccc---ccceEecCccccccchhHHHHHH-hcCCCCCccccccc
Q 041871 100 GLECAVCLSKFED---TEILRLLPKCKHAFHISCIDQWL-EKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~---~~~~~~lp~C~H~FH~~CI~~WL-~~~~sCPlCR~~v~ 149 (415)
...|.||-+++.. ++.-+.+..|+--.|..|.+-=. ..++.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4499999999753 33333444577779999985422 34567999998876
No 154
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=37.19 E-value=43 Score=32.16 Aligned_cols=9 Identities=0% Similarity=-0.163 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 041871 27 LAVVIGILC 35 (415)
Q Consensus 27 i~IvIgIL~ 35 (415)
++|+|.+++
T Consensus 101 ~lI~lv~~g 109 (202)
T PF06365_consen 101 TLIALVTSG 109 (202)
T ss_pred EEEehHHhh
Confidence 333333333
No 155
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.08 E-value=28 Score=31.95 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.4
Q ss_pred ccchhh
Q 041871 23 FKPSLA 28 (415)
Q Consensus 23 f~~~i~ 28 (415)
|...|.
T Consensus 27 fsthm~ 32 (189)
T PF05568_consen 27 FSTHMY 32 (189)
T ss_pred HHHHHH
Confidence 444443
No 156
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.94 E-value=17 Score=36.67 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=28.2
Q ss_pred CCCcccccccccccccceEecC-ccccccchhHHHHHHhc
Q 041871 99 QGLECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLEK 137 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~WL~~ 137 (415)
....|.+|.|.+++.--+ .+| --.|.||..|-..-++.
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHh
Confidence 457899999999876544 322 23599999998887764
No 157
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.89 E-value=36 Score=34.53 Aligned_cols=26 Identities=27% Similarity=0.605 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 041871 26 SLAVVIGILCVMFILTFILLLYAKFCH 52 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~r~c~ 52 (415)
+++.+++|+++++++.+|+++ .+|+|
T Consensus 258 I~aSiiaIliIVLIMvIIYLI-LRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLI-LRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344455555555554444433 34444
No 158
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=36.67 E-value=25 Score=25.64 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=28.1
Q ss_pred ccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
|+.|-..+.....++.. -+..||..| -.|-.|...+....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCCe
Confidence 67788887765544222 578899877 57889988876544
No 159
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.41 E-value=21 Score=28.38 Aligned_cols=12 Identities=25% Similarity=0.988 Sum_probs=8.8
Q ss_pred ccchhHHHHHHh
Q 041871 125 AFHISCIDQWLE 136 (415)
Q Consensus 125 ~FH~~CI~~WL~ 136 (415)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 160
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.61 E-value=31 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=13.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHH
Q 041871 23 FKPSLAVVIGILCVMFILTFILLLYA 48 (415)
Q Consensus 23 f~~~i~IvIgIL~vi~ll~~Ill~~~ 48 (415)
.....+++++++++++++.+++++|+
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheE
Confidence 33344555555555555555544443
No 161
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.25 E-value=11 Score=34.72 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=8.2
Q ss_pred chhhhHHHHHHHHHH
Q 041871 25 PSLAVVIGILCVMFI 39 (415)
Q Consensus 25 ~~i~IvIgIL~vi~l 39 (415)
..|.+++||.+.+++
T Consensus 50 IVIGvVVGVGg~ill 64 (154)
T PF04478_consen 50 IVIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEEecccHHHHH
Confidence 455666665444443
No 162
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=32.77 E-value=56 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=14.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 041871 25 PSLAVVIGILCVMFILTFILLLYAKF 50 (415)
Q Consensus 25 ~~i~IvIgIL~vi~ll~~Ill~~~r~ 50 (415)
.+..+++|++++++++.+++++.+||
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666665555553
No 163
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=31.68 E-value=34 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=23.9
Q ss_pred CcccccccccccccceEecCccccccchhHHHHH
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 134 (415)
..|.+|-..|..-..-.....||++|+..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4788898887665433334469999999887654
No 164
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.47 E-value=32 Score=34.20 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.7
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~ 136 (415)
.++-+.|+.||..+.++. ++| =||+|+.+||..++.
T Consensus 40 iK~FdcCsLtLqPc~dPv---it~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPV---ITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCc---cCC-CCeeeeHHHHHHHHH
Confidence 345568999999998883 444 799999999999764
No 165
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=31.46 E-value=99 Score=27.36 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=20.9
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041871 20 VSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR 53 (415)
Q Consensus 20 ~~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r 53 (415)
...-.+++.++||-|+.+.+..+..+.+++.|.|
T Consensus 79 s~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cR 112 (126)
T PF03229_consen 79 SPPVDFALPLVIGGLCALTLAAMGAGALLRRCCR 112 (126)
T ss_pred CCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677788777777766666655554443
No 166
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=31.37 E-value=9.5 Score=33.42 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcccC
Q 041871 37 MFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 37 i~ll~~Ill~~~r~c~r~~~ 56 (415)
+++|.++|++-.+||+|+..
T Consensus 33 ~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 33 IVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhheeeeecch
Confidence 33344444555567777643
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=31.18 E-value=30 Score=39.17 Aligned_cols=46 Identities=37% Similarity=0.748 Sum_probs=28.1
Q ss_pred CCCccccccccccc----c-----cceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 99 QGLECAVCLSKFED----T-----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~----~-----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
.+..|+-|...|-. + ...-+.|.|.|.-|.+=|.+ ...||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 34567777666521 1 11224556888888766655 37799997654
No 168
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=31.04 E-value=54 Score=23.78 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041871 26 SLAVVIGILCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~r~c~r~ 54 (415)
++++++.++.++.+..+.+++|.|+.-|+
T Consensus 9 GVIlVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 9 GVILVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333334444555554443
No 169
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=29.59 E-value=82 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=17.6
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 041871 21 SNFKPSLAVVIGILCVMFILTFILLLYAKFC 51 (415)
Q Consensus 21 ~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c 51 (415)
..|.....++|.+++.+.++-+++.++.|-|
T Consensus 32 ~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 32 LPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred CcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666665555555555555543
No 171
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=28.05 E-value=32 Score=34.22 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCC--CCCc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--SCPL 143 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--sCPl 143 (415)
...|||-...+..|. +-.+|||+|-++-|...+.... .||+
T Consensus 176 s~rdPis~~~I~nPv---iSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPV---ISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhchh---hhcCcCcchhhhhHHHHhccCceeeccc
Confidence 457999877777773 3336999999999999887643 3887
No 172
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.94 E-value=74 Score=26.21 Aligned_cols=52 Identities=19% Similarity=0.472 Sum_probs=20.0
Q ss_pred CCCccccccccccccc---ceEecCccccccchhHHHHHHh-cCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTE---ILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~ 150 (415)
....|.||-+.+.... .......|+--.|+.|..-=.+ .++.||-|+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3568999999874332 2222334777788899765443 45679999987653
No 173
>PLN02436 cellulose synthase A
Probab=27.82 E-value=51 Score=38.95 Aligned_cols=50 Identities=24% Similarity=0.575 Sum_probs=34.6
Q ss_pred CCcccccccccc---cccceEecCccccccchhHHHHHH-hcCCCCCccccccc
Q 041871 100 GLECAVCLSKFE---DTEILRLLPKCKHAFHISCIDQWL-EKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~---~~~~~~~lp~C~H~FH~~CI~~WL-~~~~sCPlCR~~v~ 149 (415)
...|.||-+++. +++.-+-+..|+--.|..|.+-=. ..++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 449999999974 333334444577779999985422 23567999998876
No 174
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=27.52 E-value=46 Score=31.94 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=22.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041871 22 NFKPSLAVVIGILCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 22 ~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r~ 54 (415)
.+.+.++|-|.|-++++++++|-.+++|+|..+
T Consensus 95 Glavh~~iTITvSlImViaAliTtlvlK~C~~~ 127 (205)
T PF15298_consen 95 GLAVHQIITITVSLIMVIAALITTLVLKNCCAQ 127 (205)
T ss_pred CCCceEEEEEeeehhHHHHHhhhhhhhhhhhhh
Confidence 566667777777677777777777777776544
No 175
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=27.52 E-value=52 Score=33.84 Aligned_cols=52 Identities=23% Similarity=0.574 Sum_probs=33.5
Q ss_pred CCcccccccccc---------------cc-cceEecCccccccchhHHHHHHhc---------CCCCCcccccccCCC
Q 041871 100 GLECAVCLSKFE---------------DT-EILRLLPKCKHAFHISCIDQWLEK---------HSSCPLCRLKVNAED 152 (415)
Q Consensus 100 ~~~C~ICle~~~---------------~~-~~~~~lp~C~H~FH~~CI~~WL~~---------~~sCPlCR~~v~~~~ 152 (415)
..+||+|+..=. .+ ......| |||+--..-..-|-+. +..||.|-..+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 568999997621 11 1122455 9998777777778642 345999987776543
No 176
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.85 E-value=93 Score=31.19 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=5.0
Q ss_pred ceeeeeCCC
Q 041871 2 LFHVEAQSI 10 (415)
Q Consensus 2 ~f~v~~Q~~ 10 (415)
+++|++|+=
T Consensus 243 ~~~lqvQaF 251 (306)
T PF01299_consen 243 LSDLQVQAF 251 (306)
T ss_pred EeEEEEEEE
Confidence 455666653
No 177
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.84 E-value=34 Score=33.20 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.0
Q ss_pred chhhhHHH
Q 041871 25 PSLAVVIG 32 (415)
Q Consensus 25 ~~i~IvIg 32 (415)
++++|+|+
T Consensus 16 LNiaI~IV 23 (217)
T PF07423_consen 16 LNIAIGIV 23 (217)
T ss_pred HHHHHHHH
Confidence 33333333
No 178
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=26.60 E-value=71 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 041871 19 TVSNFKPSLAVVIGILCVMFILTFILLLYAK 49 (415)
Q Consensus 19 ~~~~f~~~i~IvIgIL~vi~ll~~Ill~~~r 49 (415)
..+..|..+.|+++++++.+++.+++.-+++
T Consensus 44 ~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 44 SYSHRWRNFGILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466788888888888777777766665544
No 179
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=26.42 E-value=13 Score=37.12 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCCcccccccccccccceEec-CccccccchhHHHHHHhcCCCCCccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLL-PKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
....||||-..-........- ..-.|.+|.-|-..|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346999998874322111000 0124667888888897667789999553
No 180
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=26.15 E-value=22 Score=37.37 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=0.0
Q ss_pred CCcccccccccc----------------cccceEecCccccccchhHHHHHHhc---------CCCCCcccccccCC
Q 041871 100 GLECAVCLSKFE----------------DTEILRLLPKCKHAFHISCIDQWLEK---------HSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~----------------~~~~~~~lp~C~H~FH~~CI~~WL~~---------~~sCPlCR~~v~~~ 151 (415)
..+||+|+..-. .+......| |||+--.....-|-+. +..||-|-..+..+
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 569999997621 111233566 9999888888888542 34599998877643
No 181
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.84 E-value=46 Score=24.76 Aligned_cols=23 Identities=35% Similarity=0.871 Sum_probs=13.3
Q ss_pred ccccccchhHHHHHHhcCCCCCcc
Q 041871 121 KCKHAFHISCIDQWLEKHSSCPLC 144 (415)
Q Consensus 121 ~C~H~FH~~CI~~WL~~~~sCPlC 144 (415)
.|||.|-..=-.+ ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4777765432222 2456679988
No 182
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.26 E-value=77 Score=27.16 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=28.7
Q ss_pred CCCcccccccccccccceEe-----cCcc---ccccchhHHHHHHhc---------CCCCCcccc
Q 041871 99 QGLECAVCLSKFEDTEILRL-----LPKC---KHAFHISCIDQWLEK---------HSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~-----lp~C---~H~FH~~CI~~WL~~---------~~sCPlCR~ 146 (415)
....|-.|...-.+.. +.- .+.| .=.||..||..++.. .-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456777776533221 111 1346 667999999888642 234999987
No 183
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.63 E-value=77 Score=32.22 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 041871 30 VIGILCVMFILTFILLLYAKFCHRAS 55 (415)
Q Consensus 30 vIgIL~vi~ll~~Ill~~~r~c~r~~ 55 (415)
+++.+++++++.+++++++-..+.|+
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555544
No 184
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.59 E-value=64 Score=38.15 Aligned_cols=50 Identities=24% Similarity=0.526 Sum_probs=34.1
Q ss_pred CCcccccccccccc---cceEecCccccccchhHHHH-HHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFEDT---EILRLLPKCKHAFHISCIDQ-WLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~---~~~~~lp~C~H~FH~~CI~~-WL~~~~sCPlCR~~v~ 149 (415)
...|.||-+++... +.-..+..|+--.|+.|.+- .-..++.||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44999999997533 33333334777799999843 2234667999998876
No 185
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.44 E-value=1e+02 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=20.2
Q ss_pred CCccccccccccc--ccceEecCccccccchhHH
Q 041871 100 GLECAVCLSKFED--TEILRLLPKCKHAFHISCI 131 (415)
Q Consensus 100 ~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI 131 (415)
..+|+.|-..... .......|.||+.+|.+-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 4489998888766 3344445557776666543
No 186
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.26 E-value=67 Score=26.91 Aligned_cols=34 Identities=26% Similarity=0.585 Sum_probs=22.3
Q ss_pred CCCcccccccccccccceEe-cCccccccchhHHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRL-LPKCKHAFHISCIDQW 134 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~-lp~C~H~FH~~CI~~W 134 (415)
....|.||.... +..+.- -+.|...||..|....
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 456999999882 322211 1238889999998663
No 187
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.82 E-value=23 Score=26.30 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=15.2
Q ss_pred ceEecCccccccchhHHHHH
Q 041871 115 ILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 115 ~~~~lp~C~H~FH~~CI~~W 134 (415)
..+..+.|+|.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34455569999999998887
No 188
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.74 E-value=1.9e+02 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 041871 34 LCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 34 L~vi~ll~~Ill~~~r~c~r~ 54 (415)
++++.++.|+|+-+++.|+..
T Consensus 197 liVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 333444455555555656543
No 189
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=23.57 E-value=1.2e+02 Score=27.81 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041871 28 AVVIGILCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 28 ~IvIgIL~vi~ll~~Ill~~~r~c~r~ 54 (415)
++.+.+.+++.++++++.++-.+++|+
T Consensus 122 ilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 122 ILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444333333333333333345554
No 190
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=28 Score=35.43 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=40.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.....|-||...+..+...- .|.|.|+..|...|......||.|+....+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 34568999999887765332 499999999999999988999999876543
No 191
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.71 E-value=1.4e+02 Score=20.08 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 041871 27 LAVVIGILCVMFILTFI 43 (415)
Q Consensus 27 i~IvIgIL~vi~ll~~I 43 (415)
+.++.|++++++++..+
T Consensus 3 ~~vi~g~llv~lLl~YL 19 (29)
T PRK14750 3 FSIVCGALLVLLLLGYL 19 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556665555554443
No 192
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.44 E-value=1.3e+02 Score=20.12 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 041871 27 LAVVIGILCVMFILTFILLL 46 (415)
Q Consensus 27 i~IvIgIL~vi~ll~~Ill~ 46 (415)
..+++|++++++++..+.+.
T Consensus 3 ~~vi~G~ilv~lLlgYLvyA 22 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566766666666555443
No 193
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.37 E-value=21 Score=32.33 Aligned_cols=18 Identities=28% Similarity=0.735 Sum_probs=12.8
Q ss_pred CCcCCCcccccccc-cccc
Q 041871 96 GSKQGLECAVCLSK-FEDT 113 (415)
Q Consensus 96 ~~~e~~~C~ICle~-~~~~ 113 (415)
+...+.+|.||+.. |.++
T Consensus 61 Gv~ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG 79 (169)
T ss_pred ccCcCcchhhhhhcccccc
Confidence 44567899999865 4444
No 194
>PHA02657 hypothetical protein; Provisional
Probab=21.94 E-value=1.3e+02 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041871 36 VMFILTFILLLYAKF 50 (415)
Q Consensus 36 vi~ll~~Ill~~~r~ 50 (415)
++.+++++++++.+|
T Consensus 36 vI~il~flLLYLvkW 50 (95)
T PHA02657 36 VVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 195
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.90 E-value=30 Score=36.89 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Q 041871 23 FKPSLAVVIGILCVMFILTFILLLY 47 (415)
Q Consensus 23 f~~~i~IvIgIL~vi~ll~~Ill~~ 47 (415)
....+++++|+++++++++++.+++
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~vc 375 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVWVC 375 (439)
T ss_dssp -------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhhee
Confidence 3344444444444444444333333
No 196
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=21.59 E-value=51 Score=29.56 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.5
Q ss_pred ecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871 118 LLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148 (415)
Q Consensus 118 ~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 148 (415)
.+++|||+|+. .+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 34479999986 456799998874
No 197
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.46 E-value=53 Score=28.36 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=20.6
Q ss_pred CCCccccccccccccc-ceEecCccccccchhHHH
Q 041871 99 QGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCID 132 (415)
Q Consensus 99 e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~ 132 (415)
+...|.+|...|..-. .......|+|.+|..|-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 5669999998874332 224445588888877743
No 198
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.40 E-value=17 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=10.2
Q ss_pred CCcccccccccccc
Q 041871 100 GLECAVCLSKFEDT 113 (415)
Q Consensus 100 ~~~C~ICle~~~~~ 113 (415)
...||.|-+.+...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 46899999865543
No 199
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=1e+02 Score=27.16 Aligned_cols=18 Identities=11% Similarity=0.776 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 041871 29 VVIGILCVMFILTFILLL 46 (415)
Q Consensus 29 IvIgIL~vi~ll~~Ill~ 46 (415)
++++++++++++++|+++
T Consensus 96 ~il~~v~~i~l~iiii~~ 113 (116)
T KOG0860|consen 96 IILGLVIIILLVVIIIYI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 200
>PHA03255 BDLF3; Provisional
Probab=21.34 E-value=1.5e+02 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHHHHHHH
Q 041871 15 PSPDTVSNFKPSLAVVIGILCVMFILTFIL 44 (415)
Q Consensus 15 ~~~~~~~~f~~~i~IvIgIL~vi~ll~~Il 44 (415)
-++.....+...-.+++|+..++++|+|..
T Consensus 174 kqps~~~glplwtlvfvgltflmlilifaa 203 (234)
T PHA03255 174 RQPSLSYGLPLWTLVFVGLTFLMLILIFAA 203 (234)
T ss_pred cCcccccCchHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555556666555555444443
No 201
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=21.23 E-value=1.6e+02 Score=22.77 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=31.8
Q ss_pred Cccccccccccccc-ceEecCccc--cccchhHHHHHHhcCCCCCcccccccC
Q 041871 101 LECAVCLSKFEDTE-ILRLLPKCK--HAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 101 ~~C~ICle~~~~~~-~~~~lp~C~--H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
..|-.|-.++.... ...+ |. ..||..|.+.-| +..||.|-..+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 46777877776555 2222 65 469999999975 5789999876654
No 202
>PHA02849 putative transmembrane protein; Provisional
Probab=21.22 E-value=1.6e+02 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=8.2
Q ss_pred ccchhhhHHHHHHHHHH
Q 041871 23 FKPSLAVVIGILCVMFI 39 (415)
Q Consensus 23 f~~~i~IvIgIL~vi~l 39 (415)
|..+...+|.++++++.
T Consensus 12 f~~g~v~vi~v~v~vI~ 28 (82)
T PHA02849 12 FDAGAVTVILVFVLVIS 28 (82)
T ss_pred cccchHHHHHHHHHHHH
Confidence 44455555554444443
No 203
>PLN02400 cellulose synthase
Probab=21.13 E-value=65 Score=38.16 Aligned_cols=50 Identities=18% Similarity=0.515 Sum_probs=33.6
Q ss_pred CCcccccccccccc---cceEecCccccccchhHHHH-HHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFEDT---EILRLLPKCKHAFHISCIDQ-WLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~~---~~~~~lp~C~H~FH~~CI~~-WL~~~~sCPlCR~~v~ 149 (415)
...|.||-+++... +.-..+..|+--.|+.|.+- .-..++.||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 44999999997533 33333334776789999743 2223567999998876
No 204
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.91 E-value=58 Score=31.73 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=17.9
Q ss_pred CcccccccccccccceEecCcccccc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAF 126 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~F 126 (415)
..||+|...+........++ ++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 47999999997655544454 67877
No 205
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=20.85 E-value=82 Score=33.19 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=23.8
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041871 21 SNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 21 ~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r~~~ 56 (415)
-+|..-+++.++|.++++++.++++.++.||+|...
T Consensus 279 R~y~~d~~vtl~iPl~i~llL~llLs~Imc~rREG~ 314 (386)
T PF05510_consen 279 RDYFPDFLVTLAIPLIIALLLLLLLSYIMCCRREGV 314 (386)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHheechHHh
Confidence 445555666666667776667777777777777543
No 206
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.81 E-value=1.2e+02 Score=30.88 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 041871 30 VIGILCVMFILTFILLLYAKFCHRAS 55 (415)
Q Consensus 30 vIgIL~vi~ll~~Ill~~~r~c~r~~ 55 (415)
.|+.++++++..+++++|+++.+||.
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45656655555555566666555553
No 207
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.77 E-value=49 Score=32.66 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCC--CCc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS--CPL 143 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~s--CPl 143 (415)
...|+|-+..+..+ ++..+|+|.|-.+-|...|+...+ ||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 45899988776655 234479999999999999885444 664
No 208
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=20.67 E-value=1.7e+02 Score=24.41 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=8.0
Q ss_pred CCCcccchhhhHHH
Q 041871 19 TVSNFKPSLAVVIG 32 (415)
Q Consensus 19 ~~~~f~~~i~IvIg 32 (415)
....+.|.+.+.|-
T Consensus 18 ~~~~l~pn~lMtIL 31 (85)
T PF10717_consen 18 NLNGLNPNTLMTIL 31 (85)
T ss_pred cccccChhHHHHHH
Confidence 34667777664443
No 209
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.37 E-value=37 Score=25.20 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=6.3
Q ss_pred CCCcccccccCC
Q 041871 140 SCPLCRLKVNAE 151 (415)
Q Consensus 140 sCPlCR~~v~~~ 151 (415)
.||+|..++..+
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999888654
No 210
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.19 E-value=1.1e+02 Score=35.26 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=8.8
Q ss_pred CCccchhhccHHH
Q 041871 248 ASSSDLMLLNSEL 260 (415)
Q Consensus 248 ~~~sdl~~~~sem 260 (415)
+|-+-++.+|+|+
T Consensus 598 lnea~~~q~n~El 610 (807)
T PF10577_consen 598 LNEAAMAQMNGEL 610 (807)
T ss_pred cchhhhhccchhh
Confidence 4556677777774
No 211
>PTZ00370 STEVOR; Provisional
Probab=20.03 E-value=1.2e+02 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 041871 30 VIGILCVMFILTFILLLYAKFCHRAS 55 (415)
Q Consensus 30 vIgIL~vi~ll~~Ill~~~r~c~r~~ 55 (415)
.|+.++++++..+++++|+++.+||.
T Consensus 258 giaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555556666555553
Done!