Query 041871
Match_columns 415
No_of_seqs 406 out of 1985
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.6E-15 9.1E-20 122.6 7.3 79 71-150 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.5 3.5E-15 1.2E-19 117.0 4.7 69 82-151 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.7E-18 100.3 4.3 52 98-149 3-54 (55)
4 2ect_A Ring finger protein 126 99.4 4E-13 1.4E-17 105.6 5.4 58 97-155 12-69 (78)
5 2ep4_A Ring finger protein 24; 99.4 6.7E-13 2.3E-17 103.3 5.9 54 97-151 12-65 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 7E-13 2.4E-17 101.9 5.7 55 97-152 11-65 (69)
7 1v87_A Deltex protein 2; ring- 99.3 1.4E-12 4.8E-17 109.7 5.3 55 99-154 24-98 (114)
8 2ecl_A Ring-box protein 2; RNF 99.3 1.2E-12 4.2E-17 104.6 3.9 52 99-150 14-76 (81)
9 3ng2_A RNF4, snurf, ring finge 99.3 2.6E-12 8.8E-17 98.8 4.1 55 98-153 8-66 (71)
10 2ecm_A Ring finger and CHY zin 99.3 3.9E-12 1.3E-16 93.2 4.6 51 98-149 3-54 (55)
11 2ea6_A Ring finger protein 4; 99.2 4.4E-12 1.5E-16 96.6 4.0 53 97-150 12-68 (69)
12 2xeu_A Ring finger protein 4; 99.2 5.7E-12 2E-16 94.6 3.3 53 99-152 2-58 (64)
13 2djb_A Polycomb group ring fin 99.2 2.6E-11 8.9E-16 94.2 5.5 56 96-154 11-66 (72)
14 3dpl_R Ring-box protein 1; ubi 99.2 1.7E-11 5.7E-16 103.6 4.4 50 99-149 36-100 (106)
15 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.6E-16 95.5 2.6 53 96-153 11-63 (70)
16 2ct2_A Tripartite motif protei 99.1 6.4E-11 2.2E-15 94.5 6.3 56 96-152 11-70 (88)
17 1chc_A Equine herpes virus-1 r 99.1 4E-11 1.4E-15 91.6 4.4 49 99-150 4-52 (68)
18 2d8t_A Dactylidin, ring finger 99.1 3.8E-11 1.3E-15 93.0 3.4 50 98-151 13-62 (71)
19 2d8s_A Cellular modulator of i 99.1 8.6E-11 2.9E-15 94.4 5.4 54 97-152 12-72 (80)
20 2yur_A Retinoblastoma-binding 99.1 1.4E-10 4.7E-15 90.7 5.5 53 96-151 11-65 (74)
21 2ysl_A Tripartite motif-contai 99.1 1.3E-10 4.4E-15 89.8 4.9 52 97-152 17-71 (73)
22 2ecy_A TNF receptor-associated 99.0 1.2E-10 4.2E-15 88.7 4.7 52 97-152 12-64 (66)
23 2csy_A Zinc finger protein 183 99.0 1.3E-10 4.5E-15 92.0 4.8 49 97-149 12-60 (81)
24 1t1h_A Gspef-atpub14, armadill 99.0 1.7E-10 6E-15 90.4 4.9 53 97-153 5-58 (78)
25 2ecw_A Tripartite motif-contai 99.0 2.1E-10 7.4E-15 90.4 5.2 53 97-153 16-74 (85)
26 4ayc_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 102.1 3.4 48 99-150 52-99 (138)
27 2ecv_A Tripartite motif-contai 99.0 2.9E-10 9.8E-15 89.6 5.5 53 97-153 16-74 (85)
28 4a0k_B E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 103.0 0.2 51 99-149 47-111 (117)
29 1g25_A CDK-activating kinase a 99.0 2.6E-10 8.8E-15 86.7 4.1 55 99-154 2-59 (65)
30 2egp_A Tripartite motif-contai 99.0 1E-10 3.5E-15 91.6 1.3 53 96-152 8-67 (79)
31 4ap4_A E3 ubiquitin ligase RNF 99.0 2.4E-10 8.1E-15 97.2 3.5 55 98-153 5-63 (133)
32 3lrq_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 94.7 3.3 53 98-153 20-73 (100)
33 2ysj_A Tripartite motif-contai 98.9 7.4E-10 2.5E-14 83.5 5.1 45 96-144 16-63 (63)
34 2y43_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 92.9 3.0 51 99-152 21-71 (99)
35 2ct0_A Non-SMC element 1 homol 98.9 9E-10 3.1E-14 87.4 4.9 53 98-153 13-67 (74)
36 3ztg_A E3 ubiquitin-protein li 98.9 8.7E-10 3E-14 89.1 4.8 51 96-149 9-61 (92)
37 3fl2_A E3 ubiquitin-protein li 98.9 8.2E-10 2.8E-14 94.3 4.8 48 99-150 51-99 (124)
38 2ckl_A Polycomb group ring fin 98.9 7.6E-10 2.6E-14 92.4 3.8 51 98-151 13-63 (108)
39 2ecj_A Tripartite motif-contai 98.9 9.8E-10 3.3E-14 81.0 3.9 44 97-144 12-58 (58)
40 1jm7_A BRCA1, breast cancer ty 98.9 1.5E-09 5E-14 90.4 4.7 52 99-154 20-74 (112)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 9E-10 3.1E-14 93.6 3.3 54 98-152 70-127 (133)
42 3hct_A TNF receptor-associated 98.8 1.6E-09 5.5E-14 91.9 3.4 52 96-151 14-66 (118)
43 2ckl_B Ubiquitin ligase protei 98.8 2E-09 6.9E-14 96.3 4.1 50 98-150 52-102 (165)
44 1z6u_A NP95-like ring finger p 98.8 3.1E-09 1E-13 94.5 4.8 49 99-151 77-126 (150)
45 2kr4_A Ubiquitin conjugation f 98.8 3E-09 1E-13 85.8 4.2 52 98-153 12-63 (85)
46 2kre_A Ubiquitin conjugation f 98.8 3.6E-09 1.2E-13 88.1 4.5 53 98-154 27-79 (100)
47 1wgm_A Ubiquitin conjugation f 98.8 5.4E-09 1.8E-13 86.8 4.7 53 98-154 20-73 (98)
48 3l11_A E3 ubiquitin-protein li 98.7 1.2E-09 4E-14 92.1 0.1 49 98-150 13-62 (115)
49 1rmd_A RAG1; V(D)J recombinati 98.7 4.9E-09 1.7E-13 88.4 3.7 51 99-153 22-73 (116)
50 1e4u_A Transcriptional repress 98.7 1.1E-08 3.8E-13 81.6 4.8 56 97-153 8-65 (78)
51 1jm7_B BARD1, BRCA1-associated 98.7 5.1E-09 1.7E-13 88.7 1.8 51 98-154 20-71 (117)
52 3knv_A TNF receptor-associated 98.6 8.2E-09 2.8E-13 90.9 2.5 52 97-152 28-80 (141)
53 2vje_A E3 ubiquitin-protein li 98.6 2.4E-08 8.3E-13 76.3 3.6 49 99-149 7-56 (64)
54 2c2l_A CHIP, carboxy terminus 98.6 1.8E-08 6E-13 95.7 3.5 52 98-153 206-258 (281)
55 1bor_A Transcription factor PM 98.6 1.4E-08 4.8E-13 75.4 2.1 47 98-151 4-50 (56)
56 2y1n_A E3 ubiquitin-protein li 98.6 2.4E-08 8E-13 101.6 4.4 48 100-151 332-380 (389)
57 2yu4_A E3 SUMO-protein ligase 98.6 2.1E-08 7E-13 82.2 2.7 53 97-152 4-65 (94)
58 2vje_B MDM4 protein; proto-onc 98.5 3.8E-08 1.3E-12 75.0 3.6 49 99-149 6-55 (63)
59 3hcs_A TNF receptor-associated 98.5 5.4E-08 1.9E-12 87.2 3.3 53 96-152 14-67 (170)
60 2g45_A Ubiquitin carboxyl-term 98.5 2.6E-08 8.9E-13 86.9 0.5 94 129-232 2-106 (129)
61 3k1l_B Fancl; UBC, ring, RWD, 98.4 4.6E-08 1.6E-12 97.8 2.2 53 98-150 306-373 (381)
62 4ic3_A E3 ubiquitin-protein li 98.4 3.5E-08 1.2E-12 77.2 1.0 44 99-150 23-67 (74)
63 1wim_A KIAA0161 protein; ring 98.4 9E-08 3.1E-12 77.9 3.3 49 98-147 3-61 (94)
64 2f42_A STIP1 homology and U-bo 98.4 8.6E-08 2.9E-12 88.0 3.5 54 97-154 103-157 (179)
65 2i50_A Ubiquitin carboxyl-term 98.4 3.4E-08 1.2E-12 85.9 -1.2 93 121-232 6-107 (126)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.9E-07 1.7E-11 68.6 4.1 49 98-149 4-58 (60)
67 2ecg_A Baculoviral IAP repeat- 98.2 4.3E-07 1.5E-11 71.0 2.8 44 99-150 24-68 (75)
68 3htk_C E3 SUMO-protein ligase 98.2 4.8E-07 1.6E-11 87.5 2.5 54 98-154 179-236 (267)
69 2ea5_A Cell growth regulator w 98.2 1.7E-06 5.7E-11 66.9 4.7 45 98-150 13-58 (68)
70 2bay_A PRE-mRNA splicing facto 98.1 1.1E-06 3.8E-11 66.7 2.5 52 101-155 4-55 (61)
71 2yho_A E3 ubiquitin-protein li 98.1 1.1E-06 3.8E-11 69.8 2.0 44 99-150 17-61 (79)
72 3ihp_A Ubiquitin carboxyl-term 98.0 4E-07 1.4E-11 101.0 -1.8 101 122-232 176-287 (854)
73 3t6p_A Baculoviral IAP repeat- 98.0 1.4E-06 4.8E-11 87.4 1.3 43 99-149 294-337 (345)
74 3c5k_A HD6, histone deacetylas 97.9 1.2E-06 4E-11 74.3 -1.2 63 172-238 29-91 (109)
75 3nw0_A Non-structural maintena 97.7 3.6E-05 1.2E-09 73.4 5.6 53 99-154 179-233 (238)
76 2ida_A Hypothetical protein; z 97.6 5.2E-06 1.8E-10 69.6 -1.4 53 177-233 32-87 (102)
77 2uzg_A Ubiquitin carboxyl-term 97.4 1.1E-05 3.8E-10 66.9 -1.5 52 176-231 35-88 (97)
78 3vk6_A E3 ubiquitin-protein li 97.4 9.8E-05 3.4E-09 61.5 3.5 46 102-150 3-49 (101)
79 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.073 2.5E-06 43.0 3.3 35 99-134 2-36 (101)
80 2lri_C Autoimmune regulator; Z 91.6 0.13 4.5E-06 39.3 3.3 47 98-148 10-60 (66)
81 3mhs_A Ubiquitin carboxyl-term 89.9 0.032 1.1E-06 56.9 -2.1 49 177-231 60-108 (476)
82 2ko5_A Ring finger protein Z; 89.9 0.15 5.1E-06 41.9 2.3 52 95-151 23-74 (99)
83 2l5u_A Chromodomain-helicase-D 82.0 0.7 2.4E-05 34.5 2.3 46 98-147 9-58 (61)
84 3u5n_A E3 ubiquitin-protein li 81.2 0.39 1.3E-05 44.1 0.7 46 99-148 6-55 (207)
85 3o36_A Transcription intermedi 79.0 0.55 1.9E-05 42.2 1.0 46 99-148 3-52 (184)
86 1we9_A PHD finger family prote 77.2 0.56 1.9E-05 34.9 0.4 49 98-146 4-57 (64)
87 1mm2_A MI2-beta; PHD, zinc fin 77.1 0.7 2.4E-05 34.5 0.9 46 98-147 7-56 (61)
88 2yql_A PHD finger protein 21A; 75.6 0.43 1.5E-05 34.9 -0.7 46 97-146 6-55 (56)
89 3lqh_A Histone-lysine N-methyl 74.4 1.2 4.2E-05 40.5 1.9 49 100-148 2-64 (183)
90 2klu_A T-cell surface glycopro 74.2 4.5 0.00016 31.0 4.7 35 22-56 5-40 (70)
91 2k16_A Transcription initiatio 73.6 1.1 3.9E-05 34.3 1.3 51 98-149 16-70 (75)
92 3m62_A Ubiquitin conjugation f 71.6 2.1 7E-05 48.1 3.2 54 98-155 889-943 (968)
93 1f62_A Transcription factor WS 71.4 1.6 5.5E-05 30.9 1.6 44 102-146 2-49 (51)
94 2puy_A PHD finger protein 21A; 69.9 0.6 2.1E-05 34.5 -1.0 47 99-149 4-54 (60)
95 2l43_A N-teminal domain from h 69.2 1.7 5.7E-05 34.8 1.4 53 98-150 23-78 (88)
96 3v43_A Histone acetyltransfera 68.6 1.3 4.3E-05 36.9 0.6 45 102-146 63-111 (112)
97 2knc_B Integrin beta-3; transm 67.3 5.1 0.00018 31.6 3.8 27 26-52 10-36 (79)
98 1xwh_A Autoimmune regulator; P 66.8 1.3 4.4E-05 33.4 0.2 46 98-147 6-55 (66)
99 1fp0_A KAP-1 corepressor; PHD 65.6 2.8 9.7E-05 33.8 2.1 47 97-147 22-72 (88)
100 1wil_A KIAA1045 protein; ring 64.9 5.6 0.00019 32.0 3.6 35 98-134 13-47 (89)
101 3pg6_A E3 ubiquitin-protein li 62.9 5.1 0.00017 35.7 3.3 91 141-238 15-112 (159)
102 2cs3_A Protein C14ORF4, MY039 61.9 11 0.00039 30.0 4.8 39 98-137 13-52 (93)
103 2ro1_A Transcription intermedi 61.3 1.8 6E-05 39.4 0.1 44 100-147 2-49 (189)
104 2l8s_A Integrin alpha-1; trans 60.0 16 0.00054 26.9 5.0 26 25-50 8-33 (54)
105 2e6r_A Jumonji/ARID domain-con 59.8 1.3 4.6E-05 35.7 -0.9 49 98-147 14-66 (92)
106 2knc_A Integrin alpha-IIB; tra 59.7 17 0.00059 26.7 5.2 26 25-50 11-36 (54)
107 2ri7_A Nucleosome-remodeling f 59.1 2 7E-05 37.9 0.1 49 98-147 6-59 (174)
108 2yt5_A Metal-response element- 58.8 4.8 0.00016 29.9 2.1 50 98-147 4-61 (66)
109 2vpb_A Hpygo1, pygopus homolog 58.4 6.1 0.00021 29.8 2.7 34 98-131 6-40 (65)
110 2ysm_A Myeloid/lymphoid or mix 58.1 2.7 9.2E-05 34.5 0.7 47 98-145 5-55 (111)
111 1wev_A Riken cDNA 1110020M19; 57.0 2.2 7.4E-05 34.1 -0.1 52 99-150 15-75 (88)
112 2jwa_A Receptor tyrosine-prote 56.0 16 0.00056 25.7 4.3 22 26-48 14-35 (44)
113 1wfk_A Zinc finger, FYVE domai 55.1 8 0.00027 30.8 3.0 38 96-133 5-42 (88)
114 3v43_A Histone acetyltransfera 55.0 15 0.0005 30.3 4.7 47 99-145 4-62 (112)
115 2lv9_A Histone-lysine N-methyl 54.7 4 0.00014 33.2 1.1 45 100-146 28-75 (98)
116 2k9j_B Integrin beta-3; transm 54.1 15 0.0005 25.6 3.9 28 26-53 9-36 (43)
117 2ks1_B Epidermal growth factor 54.1 26 0.00089 24.6 5.1 6 42-47 29-34 (44)
118 2lbm_A Transcriptional regulat 53.9 12 0.00042 32.6 4.2 45 98-146 61-116 (142)
119 3ql9_A Transcriptional regulat 53.8 9 0.00031 33.0 3.3 45 98-146 55-110 (129)
120 1weo_A Cellulose synthase, cat 53.0 17 0.00057 29.5 4.5 52 99-150 15-70 (93)
121 1wep_A PHF8; structural genomi 52.7 10 0.00034 29.3 3.2 49 99-148 11-64 (79)
122 3i2d_A E3 SUMO-protein ligase 52.3 9.6 0.00033 38.3 3.7 52 100-155 249-305 (371)
123 3asl_A E3 ubiquitin-protein li 51.8 3.3 0.00011 31.7 0.2 44 102-146 20-68 (70)
124 2e6s_A E3 ubiquitin-protein li 51.8 2.8 9.6E-05 32.8 -0.2 44 102-146 28-76 (77)
125 3ask_A E3 ubiquitin-protein li 51.1 3.9 0.00013 38.5 0.6 44 102-146 176-224 (226)
126 4fo9_A E3 SUMO-protein ligase 50.2 11 0.00037 37.8 3.6 53 100-155 215-271 (360)
127 2kgg_A Histone demethylase jar 49.5 13 0.00044 26.4 3.1 44 102-145 4-52 (52)
128 1y02_A CARP2, FYVE-ring finger 49.4 2.9 9.8E-05 35.6 -0.6 48 100-147 19-66 (120)
129 1joc_A EEA1, early endosomal a 49.3 9.1 0.00031 32.4 2.6 35 99-133 68-102 (125)
130 3t7l_A Zinc finger FYVE domain 47.6 11 0.00036 30.1 2.6 36 99-134 19-54 (90)
131 2kwj_A Zinc finger protein DPF 47.2 12 0.00041 31.0 3.0 45 101-145 2-59 (114)
132 3mjh_B Early endosome antigen 47.1 2.7 9.3E-05 28.1 -0.8 19 98-116 3-21 (34)
133 2yw8_A RUN and FYVE domain-con 47.0 12 0.00042 29.1 2.9 36 98-133 17-52 (82)
134 3shb_A E3 ubiquitin-protein li 46.2 3.6 0.00012 32.2 -0.4 44 102-146 28-76 (77)
135 1dvp_A HRS, hepatocyte growth 46.0 9.1 0.00031 35.1 2.2 35 99-133 160-194 (220)
136 1weu_A Inhibitor of growth fam 45.9 12 0.0004 30.3 2.6 46 98-148 34-86 (91)
137 2k1a_A Integrin alpha-IIB; sin 45.7 29 0.001 24.1 4.3 27 24-50 8-34 (42)
138 2ks1_B Epidermal growth factor 45.6 19 0.00066 25.3 3.3 29 28-56 12-40 (44)
139 1z2q_A LM5-1; membrane protein 44.8 15 0.00051 28.7 3.0 36 98-133 19-54 (84)
140 2ku3_A Bromodomain-containing 44.7 19 0.00064 27.5 3.5 49 98-146 14-65 (71)
141 4gne_A Histone-lysine N-methyl 44.6 16 0.00053 30.4 3.2 49 97-151 12-66 (107)
142 1vfy_A Phosphatidylinositol-3- 44.1 14 0.00049 28.1 2.7 32 101-132 12-43 (73)
143 1z60_A TFIIH basal transcripti 43.6 7.7 0.00026 29.0 1.1 42 101-144 16-58 (59)
144 3zyq_A Hepatocyte growth facto 43.1 11 0.00038 34.9 2.3 35 99-133 163-197 (226)
145 1x4u_A Zinc finger, FYVE domai 41.9 17 0.00057 28.4 2.9 35 98-132 12-46 (84)
146 1zbd_B Rabphilin-3A; G protein 41.8 12 0.00042 32.1 2.3 33 98-130 53-86 (134)
147 3mpx_A FYVE, rhogef and PH dom 41.1 5.7 0.00019 39.6 0.0 37 99-135 374-410 (434)
148 2l2t_A Receptor tyrosine-prote 41.0 40 0.0014 23.7 4.4 28 22-49 8-35 (44)
149 2xb1_A Pygopus homolog 2, B-ce 39.8 12 0.00041 30.7 1.8 49 100-148 3-62 (105)
150 1x61_A Thyroid receptor intera 39.1 30 0.001 25.2 3.9 41 99-149 4-44 (72)
151 1wen_A Inhibitor of growth fam 38.1 21 0.00071 27.3 2.8 45 98-147 14-65 (71)
152 1x4l_A Skeletal muscle LIM-pro 36.6 35 0.0012 24.9 3.9 42 99-150 4-47 (72)
153 1wyh_A SLIM 2, skeletal muscle 35.4 32 0.0011 25.0 3.5 42 100-151 5-46 (72)
154 1g47_A Pinch protein; LIM doma 34.1 31 0.0011 25.5 3.2 43 99-151 10-52 (77)
155 1wee_A PHD finger family prote 33.1 7 0.00024 29.7 -0.6 49 99-148 15-67 (72)
156 2kwj_A Zinc finger protein DPF 33.0 4 0.00014 33.9 -2.2 46 102-148 60-109 (114)
157 1iml_A CRIP, cysteine rich int 32.7 27 0.00093 25.9 2.7 39 102-151 2-40 (76)
158 2ysm_A Myeloid/lymphoid or mix 32.4 6.4 0.00022 32.2 -1.1 45 102-147 56-104 (111)
159 1x4k_A Skeletal muscle LIM-pro 31.7 38 0.0013 24.6 3.3 42 100-151 5-46 (72)
160 1wem_A Death associated transc 30.7 19 0.00064 27.5 1.4 47 100-148 16-71 (76)
161 2o35_A Hypothetical protein DU 30.1 19 0.00066 29.7 1.5 13 125-137 42-54 (105)
162 3fyb_A Protein of unknown func 29.9 19 0.00067 29.6 1.5 12 125-136 41-52 (104)
163 2cu8_A Cysteine-rich protein 2 29.4 50 0.0017 24.4 3.7 42 99-151 8-49 (76)
164 2knc_A Integrin alpha-IIB; tra 28.9 97 0.0033 22.6 4.9 35 20-54 9-43 (54)
165 3o70_A PHD finger protein 13; 28.8 12 0.00042 28.3 0.1 48 97-146 16-66 (68)
166 2zet_C Melanophilin; complex, 28.5 26 0.00089 30.8 2.2 33 99-131 67-100 (153)
167 2k9y_A Ephrin type-A receptor 28.4 48 0.0016 22.2 3.1 12 30-41 16-27 (41)
168 1x63_A Skeletal muscle LIM-pro 28.2 47 0.0016 24.8 3.4 42 100-151 15-56 (82)
169 2co8_A NEDD9 interacting prote 27.9 56 0.0019 24.7 3.8 43 98-151 13-55 (82)
170 2klu_A T-cell surface glycopro 27.6 56 0.0019 25.0 3.5 34 23-56 3-37 (70)
171 2dj7_A Actin-binding LIM prote 26.8 49 0.0017 25.0 3.3 40 99-149 14-53 (80)
172 2jwa_A Receptor tyrosine-prote 26.3 80 0.0027 22.2 3.9 30 27-56 11-40 (44)
173 2rsd_A E3 SUMO-protein ligase 26.3 8.6 0.0003 28.9 -1.2 46 99-146 9-64 (68)
174 2vnf_A ING 4, P29ING4, inhibit 26.2 15 0.00051 27.0 0.2 43 99-146 9-58 (60)
175 3f6q_B LIM and senescent cell 24.8 41 0.0014 24.2 2.4 43 99-151 10-52 (72)
176 3c6w_A P28ING5, inhibitor of g 24.6 17 0.00058 26.7 0.2 43 99-146 8-57 (59)
177 1x68_A FHL5 protein; four-and- 24.6 70 0.0024 23.6 3.7 40 100-149 5-46 (76)
178 2l3k_A Rhombotin-2, linker, LI 24.0 45 0.0015 27.3 2.8 38 102-149 10-47 (123)
179 1wew_A DNA-binding family prot 23.8 28 0.00095 26.8 1.3 48 99-148 15-73 (78)
180 2ct7_A Ring finger protein 31; 23.5 6.5 0.00022 31.0 -2.5 19 117-135 44-62 (86)
181 2d8x_A Protein pinch; LIM doma 23.3 67 0.0023 23.2 3.3 41 99-151 4-44 (70)
182 1zfo_A LAsp-1; LIM domain, zin 22.7 36 0.0012 21.6 1.4 28 101-131 4-31 (31)
183 2knc_B Integrin beta-3; transm 21.4 84 0.0029 24.5 3.7 29 22-50 9-38 (79)
184 2jmo_A Parkin; IBR, E3 ligase, 21.4 7.5 0.00026 30.3 -2.5 14 121-134 55-68 (80)
185 2k1k_A Ephrin type-A receptor 21.1 1.6E+02 0.0055 19.7 4.6 19 27-45 14-32 (38)
186 2d8v_A Zinc finger FYVE domain 21.0 67 0.0023 24.6 2.8 32 97-133 5-37 (67)
187 2d8z_A Four and A half LIM dom 20.6 78 0.0027 22.7 3.2 39 100-150 5-43 (70)
188 2jmi_A Protein YNG1, ING1 homo 20.3 18 0.00061 29.1 -0.5 47 97-146 23-75 (90)
189 1x62_A C-terminal LIM domain p 20.2 72 0.0025 23.8 3.0 39 99-149 14-52 (79)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=122.56 Aligned_cols=79 Identities=29% Similarity=0.663 Sum_probs=68.1
Q ss_pred cccccCCCCHHHHhhCCceeeecCcC-CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 71 STSRFSGIDKAVIESLPFFRFSSLKG-SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 71 ~~~r~~gl~~~~i~~Lp~~~~~~~~~-~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
......|++++.++.||.+.+..... ..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34456699999999999998876543 346778999999999988888898 9999999999999999999999999876
Q ss_pred C
Q 041871 150 A 150 (415)
Q Consensus 150 ~ 150 (415)
+
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=117.01 Aligned_cols=69 Identities=36% Similarity=0.938 Sum_probs=61.0
Q ss_pred HHhhCCceeeecCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 82 VIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 82 ~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.++.||.+++.......+...|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+.+.
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356789998887776777889999999999998888898 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=2e-13 Score=100.32 Aligned_cols=52 Identities=58% Similarity=1.266 Sum_probs=46.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
.+..+|+||++.|..++....++.|+|.||..||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567999999999998888888779999999999999999999999998763
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=4e-13 Score=105.64 Aligned_cols=58 Identities=45% Similarity=0.980 Sum_probs=50.9
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 155 (415)
..+...|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 345779999999999988888888 9999999999999998899999999987765443
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.7e-13 Score=103.34 Aligned_cols=54 Identities=43% Similarity=0.882 Sum_probs=48.4
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
......|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345679999999999998888888 999999999999999999999999988653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=7e-13 Score=101.89 Aligned_cols=55 Identities=42% Similarity=0.972 Sum_probs=48.5
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
......|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345679999999998888888888 9999999999999999999999999887543
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1.4e-12 Score=109.71 Aligned_cols=55 Identities=27% Similarity=0.616 Sum_probs=43.3
Q ss_pred CCCccccccccccccc---------------ceEecCccccccchhHHHHHHh-----cCCCCCcccccccCCCCC
Q 041871 99 QGLECAVCLSKFEDTE---------------ILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 99 e~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v~~~~~~ 154 (415)
.+..|+||++.|..+. .+.+++ |+|.||..||..|+. .+.+||+||..+......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 3469999999997653 233566 999999999999994 467899999988765443
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=104.65 Aligned_cols=52 Identities=27% Similarity=0.774 Sum_probs=42.6
Q ss_pred CCCccccccccccc-----------ccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFED-----------TEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~-----------~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
++.+|+||++.|.. ++.++.++.|+|.||..||.+||..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888854 34455666699999999999999999999999998754
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.6e-12 Score=98.81 Aligned_cols=55 Identities=24% Similarity=0.696 Sum_probs=46.4
Q ss_pred cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
.+...|+||++.|..+ .....++ |||.||..||..|+..+.+||+||..+...+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4567999999999775 3445666 99999999999999999999999999876554
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=3.9e-12 Score=93.20 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=43.0
Q ss_pred cCCCccccccccccccc-ceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 98 KQGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
.....|+||++.|..+. ....++ |+|.||..||..|+....+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34679999999996644 455666 9999999999999999999999998764
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.4e-12 Score=96.64 Aligned_cols=53 Identities=25% Similarity=0.725 Sum_probs=44.3
Q ss_pred CcCCCccccccccccccc----ceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 97 SKQGLECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
..+...|+||++.|..+. .+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456779999999997652 335666 99999999999999999999999998753
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=94.64 Aligned_cols=53 Identities=25% Similarity=0.731 Sum_probs=44.7
Q ss_pred CCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 99 QGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 99 e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
+..+|+||++.+..+ ..+..++ |||.||..||..|+..+.+||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456999999999765 3345666 9999999999999999999999999987654
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=94.16 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=46.0
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
...+...|+||++.+.++ +.+++ |+|.||..||..|+..+..||+||..+...+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 345677999999999875 22235 999999999999999889999999998776554
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.7e-11 Score=103.58 Aligned_cols=50 Identities=32% Similarity=0.679 Sum_probs=42.2
Q ss_pred CCCccccccccccccc---------------ceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTE---------------ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
++.+|+||++.|..+- .++.++ |+|.||..||..||..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5679999999998651 245566 9999999999999999999999999853
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=95.51 Aligned_cols=53 Identities=36% Similarity=0.982 Sum_probs=45.0
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
...+...|+||++.+.. ..++ |+|.||..||..|+..+..||+||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 34557799999999876 5677 99999999999999988999999999876543
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.4e-11 Score=94.48 Aligned_cols=56 Identities=25% Similarity=0.720 Sum_probs=46.2
Q ss_pred CCcCCCcccccccccccccc-eEecCccccccchhHHHHHHhcC---CCCCcccccccCCC
Q 041871 96 GSKQGLECAVCLSKFEDTEI-LRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVNAED 152 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~~~~ 152 (415)
...+..+|+||++.|...+. .+.++ |||.||..||..|+..+ ..||+||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 34567799999999988654 45676 99999999999999875 68999999886654
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.11 E-value=4e-11 Score=91.59 Aligned_cols=49 Identities=35% Similarity=0.922 Sum_probs=42.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
....|+||++.+..+ ...++ |||.||..|+..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456999999998754 35677 99999999999999999999999998753
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.8e-11 Score=92.97 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=43.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.+...|+||++.+..+ ..++ |+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4567999999998766 4566 999999999999999889999999988643
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.6e-11 Score=94.40 Aligned_cols=54 Identities=28% Similarity=0.730 Sum_probs=44.7
Q ss_pred CcCCCcccccccccccccceEecCccc-----cccchhHHHHHHhcC--CCCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEKH--SSCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR~~v~~~~ 152 (415)
..+...|.||++++..++.+ ++| |+ |.||..||++||..+ .+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567999999999877766 577 86 999999999999865 48999999987543
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=90.73 Aligned_cols=53 Identities=23% Similarity=0.538 Sum_probs=42.8
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCcccccccCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVNAE 151 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~~~ 151 (415)
...+...|+||++.|..+. .++.|||.||..||..|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3456779999999998763 355599999999999999865 6899999975543
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=89.81 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=42.6
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~v~~~~ 152 (415)
..+...|+||++.+..+ ..++ |||.||..||..|+. ....||+||..+...+
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45677999999999865 3456 999999999999996 3558999999887654
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=88.68 Aligned_cols=52 Identities=19% Similarity=0.493 Sum_probs=42.9
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~ 152 (415)
..+...|+||++.+..+.. ++ |||.||..||..|+. ....||+||..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3456799999999987743 55 999999999999994 5678999999887653
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=92.03 Aligned_cols=49 Identities=20% Similarity=0.571 Sum_probs=42.4
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
......|+||++.|..+ .+++ |||.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567999999999775 3466 9999999999999998899999999885
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=1.7e-10 Score=90.43 Aligned_cols=53 Identities=19% Similarity=0.481 Sum_probs=44.4
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~ 153 (415)
..+...|+||++.|.++. .++ |||.||..||..|+.. +.+||+||..+...+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv---~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPV---IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp CSSSSSCTTTSCCCSSEE---EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred CcccCCCCCccccccCCE---EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 345779999999998773 456 9999999999999987 7789999999876544
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=2.1e-10 Score=90.37 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=44.4
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc------CCCCCcccccccCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK------HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v~~~~~ 153 (415)
..+...|+||++.|..+. .++ |+|.||..||..|+.. ...||+||..+...+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 456779999999998773 566 9999999999999987 6689999999876543
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.01 E-value=1e-10 Score=102.12 Aligned_cols=48 Identities=31% Similarity=0.939 Sum_probs=41.8
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+...|+||++.|..+ ..+| |||.||..||..|+..+.+||+||..+..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 346899999999776 3567 99999999999999999999999998854
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.9e-10 Score=89.63 Aligned_cols=53 Identities=32% Similarity=0.742 Sum_probs=44.3
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc------CCCCCcccccccCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK------HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v~~~~~ 153 (415)
..+...|+||++.+..+. .++ |+|.||..||..|+.. ...||+||..+...+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL---SLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB---CCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCCce---eCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 456779999999998763 456 9999999999999987 7789999999876544
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=4.2e-11 Score=102.99 Aligned_cols=51 Identities=31% Similarity=0.634 Sum_probs=1.0
Q ss_pred CCCccccccccccccc-------------c-eEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTE-------------I-LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~-------------~-~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
+...|+||++.|..+. . .+.++.|+|.||..||..||..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4579999999997532 1 2222349999999999999999999999999864
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.6e-10 Score=86.66 Aligned_cols=55 Identities=20% Similarity=0.537 Sum_probs=43.4
Q ss_pred CCCccccccc-ccccccceE-ecCccccccchhHHHHHHhc-CCCCCcccccccCCCCC
Q 041871 99 QGLECAVCLS-KFEDTEILR-LLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 99 e~~~C~ICle-~~~~~~~~~-~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~~ 154 (415)
+...|+||++ .+..+.... .++ |||.||..||..|+.. ...||+||..+...+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3568999999 787776543 455 9999999999999765 45799999998765543
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.97 E-value=1e-10 Score=91.55 Aligned_cols=53 Identities=26% Similarity=0.647 Sum_probs=43.6
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhc-------CCCCCcccccccCCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-------HSSCPLCRLKVNAED 152 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v~~~~ 152 (415)
...+...|+||++.|..+. .++ |||.||..||..|+.. ...||+||..+...+
T Consensus 8 ~~~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3456789999999998764 356 9999999999999976 567999999987643
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.96 E-value=2.4e-10 Score=97.18 Aligned_cols=55 Identities=24% Similarity=0.696 Sum_probs=46.0
Q ss_pred cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
.+..+|+||++.|..+ .....++ |||.||..||..|++.+.+||+||..+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3467999999999876 3345666 99999999999999999999999999876544
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.96 E-value=2.3e-10 Score=94.65 Aligned_cols=53 Identities=26% Similarity=0.728 Sum_probs=43.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~ 153 (415)
.+...|+||++.|..+. ..++ |||.||..||..|+... ..||+||..+...+.
T Consensus 20 ~~~~~C~IC~~~~~~p~--~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDAR--LCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHTBCTTTCSBCSSEE--ECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCccCCccccCcc--ccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 35679999999998652 2255 99999999999999887 689999999865544
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.4e-10 Score=83.47 Aligned_cols=45 Identities=31% Similarity=0.750 Sum_probs=37.4
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcc
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLC 144 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlC 144 (415)
...+...|+||++.+..+ ..++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678999999999876 3456 999999999999998 45579998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=92.93 Aligned_cols=51 Identities=27% Similarity=0.701 Sum_probs=42.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
+...|+||++.|..+. .+++ |||.||..||..|+..+..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p~--~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIAM--IIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSEE--ECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCcC--EECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 4569999999998752 2235 9999999999999998889999999887543
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=9e-10 Score=87.41 Aligned_cols=53 Identities=21% Similarity=0.527 Sum_probs=43.3
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~~~~~ 153 (415)
....+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||........
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 45679999999998765432 599999999999999877 789999988765443
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.91 E-value=8.7e-10 Score=89.06 Aligned_cols=51 Identities=24% Similarity=0.555 Sum_probs=41.6
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCccccccc
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVN 149 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~ 149 (415)
...+...|+||++.|.++. .++.|||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999999998773 454599999999999999753 58999999873
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.91 E-value=8.2e-10 Score=94.34 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=40.9
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~ 150 (415)
+...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999876 3456 999999999999998544 89999999875
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.89 E-value=7.6e-10 Score=92.37 Aligned_cols=51 Identities=31% Similarity=0.779 Sum_probs=43.1
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.+...|+||++.|..+ +.+++ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567999999999775 32336 999999999999999889999999988754
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.8e-10 Score=80.96 Aligned_cols=44 Identities=32% Similarity=0.930 Sum_probs=36.5
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLC 144 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlC 144 (415)
..+...|+||++.+..+. .++ |+|.||..||..|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV---IIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC---CCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccE---eCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 446779999999998873 456 999999999999954 46789998
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=1.5e-09 Score=90.44 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=42.7
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCC---CCCcccccccCCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLCRLKVNAEDPT 154 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v~~~~~~ 154 (415)
+...|+||++.+..+. .++ |||.||..||..|+..+. .||+||..+...+..
T Consensus 20 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIKEPV---STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCSSCC---BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhcCeE---ECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 3568999999998763 356 999999999999998654 799999988765443
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=9e-10 Score=93.57 Aligned_cols=54 Identities=24% Similarity=0.728 Sum_probs=44.8
Q ss_pred cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871 98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~ 152 (415)
.+...|+||++.|..+ .....++ |||.||..||..|+..+.+||+||..+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999999764 2234565 9999999999999999999999999987654
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=1.6e-09 Score=91.94 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=43.4
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAE 151 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~ 151 (415)
...+...|+||++.+..+ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345667999999999877 3466 999999999999998765 899999988654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.81 E-value=2e-09 Score=96.26 Aligned_cols=50 Identities=32% Similarity=0.721 Sum_probs=41.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~ 150 (415)
.+...|+||++.|..+ +.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456999999999875 33346 9999999999999987 7789999998854
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.80 E-value=3.1e-09 Score=94.54 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=41.9
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~ 151 (415)
+...|+||++.|..+. .++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV---TTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE---ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE---EcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4568999999998773 466 999999999999998754 799999998765
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.79 E-value=3e-09 Score=85.85 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=44.8
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~ 153 (415)
.+...|+||++.|.++. +++ |||.|+..||..|+..+.+||+|+..+...+.
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred chheECcccCchhcCCe---ECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 45789999999999883 566 99999999999999988999999998865543
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=3.6e-09 Score=88.14 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=45.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
.+...|+||++.|.++. +++ |||.|+..||..|+..+.+||+|+..+...+..
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred cHhhCCcCccCcccCCe---ECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 45779999999999984 456 999999999999999888999999998765443
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.76 E-value=5.4e-09 Score=86.76 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=45.5
Q ss_pred cCCCcccccccccccccceEecCccc-cccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCK-HAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
.+...|+||++.|.++. +++ || |.|+..||..||..+.+||+|+..+...+..
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccccccCCe---ECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 45779999999999984 456 99 9999999999999888999999998765443
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.74 E-value=1.2e-09 Score=92.10 Aligned_cols=49 Identities=29% Similarity=0.774 Sum_probs=41.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~ 150 (415)
.+...|+||++.|..+ +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4467999999999876 3456 9999999999999976 5689999998753
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.73 E-value=4.9e-09 Score=88.39 Aligned_cols=51 Identities=31% Similarity=0.617 Sum_probs=42.7
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~ 153 (415)
+...|+||++.+.++. .++ |||.||..||..|+.. ...||+||..+...+.
T Consensus 22 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILADPV---ETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcCcE---EcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3568999999998763 356 9999999999999987 6789999999876543
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.70 E-value=1.1e-08 Score=81.56 Aligned_cols=56 Identities=20% Similarity=0.440 Sum_probs=42.2
Q ss_pred CcCCCcccccccccccccce-EecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP 153 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~ 153 (415)
..+..+|+||++.+...+.. ..++ |||.||..|+..++.. ...||+||..+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45677999999998654332 2234 9999999999998743 5679999999876543
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=5.1e-09 Score=88.72 Aligned_cols=51 Identities=24% Similarity=0.632 Sum_probs=41.8
Q ss_pred cCCCcccccccccccccceEec-CccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLL-PKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~ 154 (415)
.+...|+||++.|..+. .+ + |||.||..||..|+. ..||+||..+...+..
T Consensus 20 ~~~~~C~IC~~~~~~pv---~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPV---CLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCCSSCB---CCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred hhCCCCCCCChHhhCcc---EeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 35679999999998773 44 5 999999999999987 7899999998654443
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.64 E-value=8.2e-09 Score=90.92 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=42.9
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~~ 152 (415)
..+...|+||++.+..+ ..++ |||.||..||..|+.... .||+||..+...+
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 35677999999999888 3456 999999999999998665 8999999875443
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.59 E-value=2.4e-08 Score=76.26 Aligned_cols=49 Identities=16% Similarity=0.446 Sum_probs=39.5
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
++..|+||++.+.+.. +..+| |||. ||..|+..|+..+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4568999999876542 11237 9999 899999999988889999999874
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.8e-08 Score=95.73 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=43.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDP 153 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~ 153 (415)
.....|+||++.|.+|. +++ |||.||..||..|+..+ .+||+|+.++...+.
T Consensus 206 ~~~~~c~i~~~~~~dPv---~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CSTTBCTTTCSBCSSEE---ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CcccCCcCcCCHhcCCe---ECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 35679999999999883 466 99999999999999864 459999998865443
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.4e-08 Score=75.37 Aligned_cols=47 Identities=28% Similarity=0.628 Sum_probs=38.9
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.+...|+||++.|..+ +.++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567899999999876 4567 9999999999884 56899999987643
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=2.4e-08 Score=101.61 Aligned_cols=48 Identities=29% Similarity=0.813 Sum_probs=40.9
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~ 151 (415)
...|+||++.+..+ ..+| |||.||..|+..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 46999999998654 4567 999999999999998 678899999988653
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=2.1e-08 Score=82.21 Aligned_cols=53 Identities=19% Similarity=0.508 Sum_probs=41.6
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC------CCCCc--cccc-ccCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH------SSCPL--CRLK-VNAED 152 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~------~sCPl--CR~~-v~~~~ 152 (415)
..+...||||++.|.++. +++.|||.|+..||..||..+ .+||+ |+.. +...+
T Consensus 4 ~~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CSSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 345679999999999873 343499999999999999764 48999 9866 54443
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.54 E-value=3.8e-08 Score=74.96 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=39.5
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
....|+||++...+.. +..+| |||. ||..|+..|...+..||+||..+.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4568999999865542 22347 9998 999999999888889999999874
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.48 E-value=5.4e-08 Score=87.23 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=43.7
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCC
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAED 152 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~ 152 (415)
...+...|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+...+
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 445678999999999887 3466 99999999999999764 48999999886543
No 60
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=98.45 E-value=2.6e-08 Score=86.95 Aligned_cols=94 Identities=6% Similarity=-0.043 Sum_probs=60.6
Q ss_pred hHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC------CCcccccc
Q 041871 129 SCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS------IGSSFRKN 202 (415)
Q Consensus 129 ~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~------~Ghafrh~ 202 (415)
.|+..| ....||.|+.......... ..... ........++...++|+|+.||++|||||+ .+||.+||
T Consensus 2 ~~~~~W--~~e~~~~C~h~~~l~q~~~-~~~~~---~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~ 75 (129)
T 2g45_A 2 QEVQAW--DGEVRQVSKHAFSLKQLDN-PARIP---PCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY 75 (129)
T ss_dssp -----------CCEECTTTTTCCCCSS-CCCCC---CCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHH
T ss_pred hHHHhh--cCCCCCCCCCcCccccccc-ccccC---CCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHh
Confidence 688999 5567888877543221110 00000 001122345566799999999999999997 89999999
Q ss_pred CCCChhhhHHHhhhhcC-----CCchhhhhccccc
Q 041871 203 KEPNKEEELLIQEEAVD-----GDDDERILHKHNH 232 (415)
Q Consensus 203 ~~~~ke~~~l~~~e~~~-----~~~~~~~~~~~~H 232 (415)
++++|.+...+++ ..+|.|..|.||+
T Consensus 76 ----~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 76 ----RETGYPLAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp ----HHHCCCEEEETTCCBTTBCCEEETTTTEEEE
T ss_pred ----hhcCCCEEEECCCCCCCCCeEEECCCCCEeE
Confidence 8999999998887 6999999999874
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=4.6e-08 Score=97.80 Aligned_cols=53 Identities=25% Similarity=0.689 Sum_probs=40.2
Q ss_pred cCCCcccccccccccccce----EecCccccccchhHHHHHHhcC-----------CCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEIL----RLLPKCKHAFHISCIDQWLEKH-----------SSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~----~~lp~C~H~FH~~CI~~WL~~~-----------~sCPlCR~~v~~ 150 (415)
.+..+|+||++.+.+...+ -..++|+|.||..||.+||+.. .+||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4567999999999873322 1223699999999999999752 359999998753
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.44 E-value=3.5e-08 Score=77.25 Aligned_cols=44 Identities=20% Similarity=0.616 Sum_probs=37.0
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+...|+||++.+.++ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456999999997664 4567 9999 999999998 789999998753
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=9e-08 Score=77.92 Aligned_cols=49 Identities=24% Similarity=0.652 Sum_probs=40.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCc--cccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPL--CRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPl--CR~~ 147 (415)
.+..+|+||++.+..++.+.+.+ |+|.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999999998887766666 9999999999998753 236999 9987
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.43 E-value=8.6e-08 Score=88.00 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=44.1
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDPT 154 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~~ 154 (415)
..+...||||++.|.+|. +++ |||.|+..||..|+..+ .+||+|+.++...+..
T Consensus 103 ip~~f~CPI~~elm~DPV---~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 103 IPDYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CcHhhcccCccccCCCCe---ECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 346789999999999883 456 99999999999999863 5799999988665443
No 65
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=98.35 E-value=3.4e-08 Score=85.89 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=72.4
Q ss_pred ccccccchhHHHHHHhc-----CCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC-
Q 041871 121 KCKHAFHISCIDQWLEK-----HSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS- 194 (415)
Q Consensus 121 ~C~H~FH~~CI~~WL~~-----~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~- 194 (415)
.|.|+++..++..|-.. ...|+.|+..-...+. +........++|+|+.||++|||||+
T Consensus 6 ~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~---------------~~~~~~~~~~Lw~CL~CG~vgCgr~~~ 70 (126)
T 2i50_A 6 VCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK---------------AEEETEEKPSVWLCLKCGHQGCGRNSQ 70 (126)
T ss_dssp CCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCS---------------SCTTTCCCCCEEEETTTCCEEECTTSS
T ss_pred CCcChhhccccccccccccCCCCCcCcccccccccccc---------------ccccccccccceeeeeCCccccCCCCc
Confidence 49999999898887432 2469999765211110 11133456789999999999999995
Q ss_pred CCccccccCCCChh---hhHHHhhhhcCCCchhhhhccccc
Q 041871 195 IGSSFRKNKEPNKE---EELLIQEEAVDGDDDERILHKHNH 232 (415)
Q Consensus 195 ~Ghafrh~~~~~ke---~~~l~~~e~~~~~~~~~~~~~~~H 232 (415)
.+||.+|| ++ ++|.+...+++..+|.|..|.|++
T Consensus 71 ~~Ha~~H~----~~~~~t~H~l~~~l~t~~vwCY~cd~~V~ 107 (126)
T 2i50_A 71 EQHALKHY----LTPRSEPHCLVLSLDNWSVWCYVCDNEVQ 107 (126)
T ss_dssp SCHHHHHH----HSCCSSCCCEEEETTTCCEEETTTTEEEC
T ss_pred chHHHHHH----hCcCCCCCcEEEECCCCeEEeCCCCcEEE
Confidence 69999999 66 789999999999999999999987
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.29 E-value=4.9e-07 Score=68.58 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=37.0
Q ss_pred cCCCcccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCccccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLCRLKVN 149 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlCR~~v~ 149 (415)
.+...|.||++... +.+ ++| .|.| .||..||.+|+.. +.+||+|++.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35679999999843 333 567 2434 8999999999974 578999998764
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.3e-07 Score=70.99 Aligned_cols=44 Identities=20% Similarity=0.621 Sum_probs=35.8
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+...|+||++.+..+ ..+| |||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 356899999998665 3567 9999 99999965 3789999998854
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.8e-07 Score=87.53 Aligned_cols=54 Identities=30% Similarity=0.557 Sum_probs=43.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCc--ccccccCCCCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPL--CRLKVNAEDPT 154 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPl--CR~~v~~~~~~ 154 (415)
.....||||++.|.+|.. .+ .|||.||..||..|+..+ ..||+ |+..+...+..
T Consensus 179 ~~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp BCCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred ceeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 456789999999988843 23 499999999999999764 46999 99988665543
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=66.92 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=36.6
Q ss_pred cCCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
.+...|+||++...+ +..+| |+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 346799999998644 46788 9999 99999984 4789999998754
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.10 E-value=1.1e-06 Score=66.74 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 155 (415)
..|+||++.+.++ .+++.|||+|...||.+|+..+.+||+++..+...+...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 5899999999977 344239999999999999998888999999987665543
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.06 E-value=1.1e-06 Score=69.83 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=36.2
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
+...|+||++.+... ..+| |||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 346899999986553 5677 9999 999999987 489999998864
No 72
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.03 E-value=4e-07 Score=101.04 Aligned_cols=101 Identities=8% Similarity=-0.042 Sum_probs=61.5
Q ss_pred cccccchhHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC------C
Q 041871 122 CKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS------I 195 (415)
Q Consensus 122 C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~------~ 195 (415)
+.+.++..|+..| ....||+|+............ ... ..+.....+....++|+|+.||++|||||. .
T Consensus 176 ~~~~~~~~~~~~w--~~~~~~~c~h~~~~~~~~~~~-~~~---~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~ 249 (854)
T 3ihp_A 176 ADSASRKQEVQAW--DGEVRQVSKHAFSLKQLDNPA-RIP---PCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGN 249 (854)
T ss_dssp ------------------CCCBCTTTTTCCCCSSCC-CCC---SSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCC
T ss_pred cCCHHHHHHHHhh--cCccCCCCcCccccccccccc-cCC---CCCCcCcCcCCcCceEEEecCCCccccccccCCCCCc
Confidence 7788999999999 455699998764322111000 000 011233456677799999999999999997 6
Q ss_pred CccccccCCCChhhhHHHhhhhcC-----CCchhhhhccccc
Q 041871 196 GSSFRKNKEPNKEEELLIQEEAVD-----GDDDERILHKHNH 232 (415)
Q Consensus 196 Ghafrh~~~~~ke~~~l~~~e~~~-----~~~~~~~~~~~~H 232 (415)
+||.+|| ++++|.+...+++ ..+|.|..+.|+.
T Consensus 250 ~ha~~H~----~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~ 287 (854)
T 3ihp_A 250 NHAVEHY----RETGYPLAVKLGTITPDGADVYSYDEDDMVL 287 (854)
T ss_dssp SHHHHHH----HHHCCCEEEETTCCBTTBCCEEETTTTEECB
T ss_pred hHHHHHH----hhcCCcEEEEcCCcCCCCCeEEEccCCCeee
Confidence 8999999 8999999998888 9999999888773
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.97 E-value=1.4e-06 Score=87.39 Aligned_cols=43 Identities=28% Similarity=0.724 Sum_probs=36.8
Q ss_pred CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
+...|+||++.+..+ ..+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 467899999998665 4567 9999 999999988 78999999875
No 74
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=97.87 E-value=1.2e-06 Score=74.33 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=55.9
Q ss_pred cccCcccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccceEEecc
Q 041871 172 REDSNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSD 238 (415)
Q Consensus 172 ~~~~~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~HRiI~S~ 238 (415)
.+....++|+|+.||++|||||..+||.+|| ++++|.+...+++..+|.|..+.|+|+-.+.|
T Consensus 29 ~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~----~~t~H~~~~~l~~~~vwCy~cd~~V~~~~L~d 91 (109)
T 3c5k_A 29 DCGTIQENWVCLSCYQVYCGRYINGHMLQHH----GNSGHPLVLSYIDLSAWCYYCQAYVHHQALLD 91 (109)
T ss_dssp TTCCCSSEEEETTTCCEEECTTTTCHHHHHH----HHHCCCEEEETTTCCEEETTTTEEBCCGGGHH
T ss_pred cccCCCCeeeeeecCccccCCCcChHHHHHh----cccCCCEEEECCCCCEEECCCCCEEecccccC
Confidence 3455678999999999999999999999999 89999999999999999999999998754433
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.68 E-value=3.6e-05 Score=73.37 Aligned_cols=53 Identities=21% Similarity=0.522 Sum_probs=42.5
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCC--CCCcccccccCCCCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--SCPLCRLKVNAEDPT 154 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--sCPlCR~~v~~~~~~ 154 (415)
....|.||.+....+. ..+.|+|.||..|+..|++.+. .||.|+.......+.
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 4678999999988663 4445999999999999997654 899999987665444
No 76
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=97.60 E-value=5.2e-06 Score=69.61 Aligned_cols=53 Identities=13% Similarity=-0.079 Sum_probs=46.5
Q ss_pred ccccccccccccCCCCC-CCCccccccCCCChhhhHH--HhhhhcCCCchhhhhccccce
Q 041871 177 IELFIQREEEHRGSSRF-SIGSSFRKNKEPNKEEELL--IQEEAVDGDDDERILHKHNHK 233 (415)
Q Consensus 177 ~el~i~~~~g~~G~gRy-~~Ghafrh~~~~~ke~~~l--~~~e~~~~~~~~~~~~~~~HR 233 (415)
.+||+|+.||++||+|| ..+||.+|| ++++|. ++.+.++..+|.|..|.|++-
T Consensus 32 v~LwlCL~CG~VGC~r~s~~~HA~~H~----~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 32 VHLRICRTCGHVGCCDDSPHKHATRHF----HATGHPIIEGYDPPEGWGWCYVDEVMFDL 87 (102)
T ss_dssp SCBEEESSSCCCCBCTTSTTCHHHHHH----HHHCCCEEEESSSCSCEEEETTTTEEEEC
T ss_pred hheeeeeEcCCCcccCCCccHHHHHHH----hccCCCEEEEEecCCCCEEEcCCCcEEEC
Confidence 47999999999999999 789999999 899999 556666778999999999853
No 77
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=97.43 E-value=1.1e-05 Score=66.87 Aligned_cols=52 Identities=12% Similarity=-0.057 Sum_probs=48.1
Q ss_pred ccccccccc--ccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhcccc
Q 041871 176 NIELFIQRE--EEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHN 231 (415)
Q Consensus 176 ~~el~i~~~--~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~ 231 (415)
..++|+|+. ||++|||||..+||.+|| ++++|.+...+++.++|.|..+.|+
T Consensus 35 ~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~----~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 35 GPNLWACLENRCSYVGCGESQVDHSTIHS----QETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp CSSCEEECCTTCCCEECCTTTTCHHHHHH----HHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCceeeecccCCCcccCCCcChHHHHHh----hhcCCcEEEECCCCCEEECCCCcEe
Confidence 357999999 999999999999999999 8999999999999999999988775
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.37 E-value=9.8e-05 Score=61.48 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=36.3
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccC
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNA 150 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~ 150 (415)
-|++|--.+. ...+.+| |+|+||.+|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777766543 3467888 999999999999975 46789999998753
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.73 E-value=0.073 Score=42.98 Aligned_cols=35 Identities=11% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 134 (415)
++..|+||++.+..+....-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3568999998754433333466 9999999999983
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.57 E-value=0.13 Score=39.34 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=34.1
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLCRLKV 148 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~v 148 (415)
.....|.||.+. ..+.....|...||..|+...|... -.||.|....
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345689999753 3455555799999999998877543 2599997643
No 81
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=89.86 E-value=0.032 Score=56.89 Aligned_cols=49 Identities=8% Similarity=-0.142 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhcccc
Q 041871 177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHN 231 (415)
Q Consensus 177 ~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~ 231 (415)
.++|+|+.||+.|||+ .+|+..|+ ++++|.+....++..+|.|..+.|+
T Consensus 60 ~~~~~cl~cg~~~c~~--~~h~~~H~----~~~~h~~~~~~~~~~~~c~~~~~~v 108 (476)
T 3mhs_A 60 GATFMCLQCGFCGCWN--HSHFLSHS----KQIGHIFGINSNNGLLFCFKCEDYI 108 (476)
T ss_dssp SSEEEESSSSCEEETT--TTHHHHHH----HHHCCCEEEETTTCCEEETTTTEEE
T ss_pred CCceEeCCCCCCccCC--chHHHHHh----cccCCcEEEECCCCcEEeCCCCCCc
Confidence 6899999999999998 89999999 8999999999888899988766554
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.85 E-value=0.15 Score=41.91 Aligned_cols=52 Identities=17% Similarity=0.398 Sum_probs=39.4
Q ss_pred cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
....+-..|-.|+-..+ .++.. ..|.+|..|+...|.....||+|+.++...
T Consensus 23 ~s~~G~~nCKsCWf~~k---~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENK---GLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCSCCCCCCSSCSCCS---SEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccccCcccChhhccccC---Ceeee--cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 33456678999997644 23221 459999999999988888999999998754
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.04 E-value=0.7 Score=34.46 Aligned_cols=46 Identities=33% Similarity=0.682 Sum_probs=32.2
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
.....|.||... ..+.....|...||..|+..-+.. .-.||.|...
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456689999863 345555568999999999875432 2359999653
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.18 E-value=0.39 Score=44.10 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=33.3
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~v 148 (415)
.+..|.+|... ..+.....|...||..|+.+-+... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45689999843 3455666799999999997765432 3599998654
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.03 E-value=0.55 Score=42.18 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=32.7
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~v 148 (415)
.+..|.||... + .+.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35689999843 3 35556679999999998775543 23599998653
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.25 E-value=0.56 Score=34.95 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=34.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHh-----cCCCCCcccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRL 146 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 146 (415)
.+...|+||...+.+....+..-.|..=||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456789999998865555555556888899999854221 2345999965
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.08 E-value=0.7 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.529 Sum_probs=31.3
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
.....|.||.+. + .+.....|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 346689999852 3 34444468899999999864432 2259999754
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.58 E-value=0.43 Score=34.90 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=31.0
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCcccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRL 146 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 146 (415)
...+..|.||... + .++....|...||..|+.+-+.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 44455569999999999864432 124888753
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=74.40 E-value=1.2 Score=40.47 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCcccccccccccccc---eEecCccccccchhHHHH------HHh-----cCCCCCcccccc
Q 041871 100 GLECAVCLSKFEDTEI---LRLLPKCKHAFHISCIDQ------WLE-----KHSSCPLCRLKV 148 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~---~~~lp~C~H~FH~~CI~~------WL~-----~~~sCPlCR~~v 148 (415)
+..|+||...|.+++. .+..-.|..=||..|+.- -+. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3479999999988763 556667999999999732 111 146799997653
No 90
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=74.17 E-value=4.5 Score=31.05 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=18.3
Q ss_pred cccchhhhHHH-HHHHHHHHHHHHHHHHHHhhcccC
Q 041871 22 NFKPSLAVVIG-ILCVMFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 22 ~f~~~i~IvIg-IL~vi~ll~~Ill~~~r~c~r~~~ 56 (415)
..+|.+.|++| ++.+++++.+.+++.+++++|+++
T Consensus 5 ~~~p~~LivlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 5 PRGSMALIVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444434554 444444555555556776666544
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.60 E-value=1.1 Score=34.32 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=35.2
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLKVN 149 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~v~ 149 (415)
.+...|.||..... +..++..-.|.--||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987754 4445555569999999999764322 335999987654
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=71.64 E-value=2.1 Score=48.13 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=44.4
Q ss_pred cCCCcccccccccccccceEecCccc-cccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCK-HAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 155 (415)
-+...|||-++.+.+|. ++| .| +.|-+.+|.+||..+.+||.=|.++...+..+
T Consensus 889 P~~F~cPIs~~lM~DPV---ilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPV---ILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSSEE---ECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhCCe---EcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 35678999999999983 566 76 68999999999999999999999887655443
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.40 E-value=1.6 Score=30.93 Aligned_cols=44 Identities=39% Similarity=0.757 Sum_probs=29.2
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc----CCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 146 (415)
.|.||...-..+ .++.-..|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898764333 44455569999999999753332 224998864
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.92 E-value=0.6 Score=34.54 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=32.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~v~ 149 (415)
.+..|.||... + .+.....|...||..|+.+=+.. .-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999874 3 44455569999999999864432 224999976543
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.24 E-value=1.7 Score=34.85 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=35.8
Q ss_pred cCCCccccccccc-ccccceEecCccccccchhHHHHHHh--cCCCCCcccccccC
Q 041871 98 KQGLECAVCLSKF-EDTEILRLLPKCKHAFHISCIDQWLE--KHSSCPLCRLKVNA 150 (415)
Q Consensus 98 ~e~~~C~ICle~~-~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~sCPlCR~~v~~ 150 (415)
.++..|.||...- .....++....|.-.||..|+..-+. ..-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4567999999763 33445666667999999999975321 12359999765443
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.60 E-value=1.3 Score=36.87 Aligned_cols=45 Identities=24% Similarity=0.659 Sum_probs=30.7
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc----CCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 146 (415)
.|.||...-.++..+.....|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653344455555569999999999764433 225998864
No 97
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=67.26 E-value=5.1 Score=31.57 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 041871 26 SLAVVIGILCVMFILTFILLLYAKFCH 52 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~r~c~ 52 (415)
.++|++|+++.++++.++++++.+++.
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776553
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=66.78 E-value=1.3 Score=33.44 Aligned_cols=46 Identities=33% Similarity=0.587 Sum_probs=31.7
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
..+..|.||... + .++....|...||..|+.+-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356789999863 3 44555569999999999864432 2249999653
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.59 E-value=2.8 Score=33.79 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=33.0
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
......|.||... + .+.....|.-.||..|+.+=+.. .-.||.|...
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999964 3 34455568899999999775433 2259999764
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=64.92 E-value=5.6 Score=32.04 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=23.5
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 134 (415)
..+..|.||-.- ...+.. -...|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-ccccee-ccccccccccHhhcccc
Confidence 357799999633 233222 12248999999999995
No 101
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=62.88 E-value=5.1 Score=35.69 Aligned_cols=91 Identities=15% Similarity=-0.007 Sum_probs=55.1
Q ss_pred CCcccccccCCCCCccccCcchhhccCCCcccccCcccccccc-------cccccCCCCCCCCccccccCCCChhhhHHH
Q 041871 141 CPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQR-------EEEHRGSSRFSIGSSFRKNKEPNKEEELLI 213 (415)
Q Consensus 141 CPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~-------~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~ 213 (415)
-|+|...+.....+.....+... ....+.+..+....|.|.. ..+|+..|+...|..+..|+++++|+..++
T Consensus 15 ~~~C~~~yG~~~GnQP~G~M~~~-~~~~sLpGy~~~gtI~I~Y~ip~GiQg~~HPnPGk~y~G~~R~AYLPdn~eGr~VL 93 (159)
T 3pg6_A 15 VPRGSTSYGIQKGNQPEGSMVFT-VSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVL 93 (159)
T ss_dssp ----------CCCCCCSEEEEEE-EESSCCTTCTTSEEEEEEEEECCEECCTTSSSTTCEECCEEEEEEEEESHHHHHHH
T ss_pred ccccCccCcccccCCCCCeEEEE-ecCCCCCCCCCCCeEEEEEEcCCccccCcCCCCCCccCCCCeEEECCCCHHHHHHH
Confidence 68998877766555555555532 3355666666666666655 245778888777999999999999999988
Q ss_pred hhhhcCCCchhhhhccccceEEecc
Q 041871 214 QEEAVDGDDDERILHKHNHKIIVSD 238 (415)
Q Consensus 214 ~~e~~~~~~~~~~~~~~~HRiI~S~ 238 (415)
.+= -..|+.+..=.|-.|.
T Consensus 94 ~LL------~~AF~~rLiFTVG~S~ 112 (159)
T 3pg6_A 94 KLL------YRAFDQKLIFTVGYSR 112 (159)
T ss_dssp HHH------HHHHHTTCSEEEEEET
T ss_pred HHH------HHHHHcCCEEEEeccc
Confidence 863 2456666666666654
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.91 E-value=11 Score=30.04 Aligned_cols=39 Identities=26% Similarity=0.565 Sum_probs=29.4
Q ss_pred cCCCcccccccccccccceEecC-ccccccchhHHHHHHhc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLEK 137 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~WL~~ 137 (415)
.....|.+|.+.+++.--+ ..| .=.|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 3467899999999877554 333 33599999999888764
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.35 E-value=1.8 Score=39.36 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=30.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
+..|.+|... ++ +.....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999854 33 4444468899999999764432 2259999765
No 104
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.01 E-value=16 Score=26.93 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=16.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 041871 25 PSLAVVIGILCVMFILTFILLLYAKF 50 (415)
Q Consensus 25 ~~i~IvIgIL~vi~ll~~Ill~~~r~ 50 (415)
|..+|++++++.+++++++.++..++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777766666555554
No 105
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.77 E-value=1.3 Score=35.70 Aligned_cols=49 Identities=29% Similarity=0.529 Sum_probs=33.5
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
.+...|.||...-. ...++..-.|...||..|+.+=|.. .-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34568999987643 3345555579999999999753322 2249999764
No 106
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.74 E-value=17 Score=26.68 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=15.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 041871 25 PSLAVVIGILCVMFILTFILLLYAKF 50 (415)
Q Consensus 25 ~~i~IvIgIL~vi~ll~~Ill~~~r~ 50 (415)
|..+|++++++.+++++++.++..++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666666665555553
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.08 E-value=2 Score=37.88 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=33.6
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHH-----hcCCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-----EKHSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL-----~~~~sCPlCR~~ 147 (415)
.+...| +|......+...+..-.|..-||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 455679 9998876555555666799999999985311 123469999764
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.82 E-value=4.8 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.515 Sum_probs=34.0
Q ss_pred cCCCcccccccccc-cccceEecCccccccchhHHHHHHh-------cCCCCCccccc
Q 041871 98 KQGLECAVCLSKFE-DTEILRLLPKCKHAFHISCIDQWLE-------KHSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~-~~~~~~~lp~C~H~FH~~CI~~WL~-------~~~sCPlCR~~ 147 (415)
.+...|.||..... ....+.....|.-.||..|+..=+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45679999997643 3345556667999999999875321 12358888654
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.40 E-value=6.1 Score=29.80 Aligned_cols=34 Identities=24% Similarity=0.547 Sum_probs=26.0
Q ss_pred cCCCcccccccccccccceEecC-ccccccchhHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLP-KCKHAFHISCI 131 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI 131 (415)
.....|++|...+.+....+..- .|.--||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34568999999988777666665 68888999997
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.13 E-value=2.7 Score=34.54 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=30.9
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCR 145 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR 145 (415)
.++..|.||.+.-+.. .++.-..|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567999998764322 23444569999999999876532 22466664
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.98 E-value=2.2 Score=34.14 Aligned_cols=52 Identities=21% Similarity=0.437 Sum_probs=36.0
Q ss_pred CCCccccccccccc-ccceEecCccccccchhHHHHHHh--------cCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFED-TEILRLLPKCKHAFHISCIDQWLE--------KHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~WL~--------~~~sCPlCR~~v~~ 150 (415)
....|.||...-.. ...+...-.|...||..|+.+=|. ..-.||.|......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35689999976432 245556667999999999986443 12359999776543
No 112
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.98 E-value=16 Score=25.71 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 041871 26 SLAVVIGILCVMFILTFILLLYA 48 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~ 48 (415)
..+.++| +++++++.+++++|.
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHhhe
Confidence 3344555 333333343434443
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.05 E-value=8 Score=30.82 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCcCCCcccccccccccccceEecCccccccchhHHHH
Q 041871 96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
+..+...|.+|...|..-..--....||++||..|...
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34556789999999875543333446999999999654
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.01 E-value=15 Score=30.28 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCCccccccccc-----ccccceEecCccccccchhHHHH------HHh-cCCCCCccc
Q 041871 99 QGLECAVCLSKF-----EDTEILRLLPKCKHAFHISCIDQ------WLE-KHSSCPLCR 145 (415)
Q Consensus 99 e~~~C~ICle~~-----~~~~~~~~lp~C~H~FH~~CI~~------WL~-~~~sCPlCR 145 (415)
....|.+|+..- ..++.++.-..|+..||..|+.. -+. ..-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346899998753 23345556667999999999953 121 233577775
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=54.69 E-value=4 Score=33.17 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=30.0
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhc---CCCCCcccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK---HSSCPLCRL 146 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~sCPlCR~ 146 (415)
...| ||-.....+. ++..-.|.--||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4567 8987765554 4455569999999998652221 235999963
No 116
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=54.15 E-value=15 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041871 26 SLAVVIGILCVMFILTFILLLYAKFCHR 53 (415)
Q Consensus 26 ~i~IvIgIL~vi~ll~~Ill~~~r~c~r 53 (415)
.+++++++++.++++.+++++..|++..
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566678888888888888777777643
No 117
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=54.07 E-value=26 Score=24.61 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.2
Q ss_pred HHHHHH
Q 041871 42 FILLLY 47 (415)
Q Consensus 42 ~Ill~~ 47 (415)
++.++|
T Consensus 29 ~~~~~~ 34 (44)
T 2ks1_B 29 LGIGLF 34 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 118
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=53.94 E-value=12 Score=32.57 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=32.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHh-----------cCCCCCcccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-----------KHSSCPLCRL 146 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----------~~~sCPlCR~ 146 (415)
..+..|.||.+- ..+.....|...||..||.+=+. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346789999864 34555556999999999997542 1235999963
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=53.80 E-value=9 Score=32.96 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=31.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHH-----h------cCCCCCcccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-----E------KHSSCPLCRL 146 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL-----~------~~~sCPlCR~ 146 (415)
..+..|.||-+- ..+.....|...||..||.+-+ . ..-.|++|.-
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999853 3454555699999999999742 1 1235999954
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.03 E-value=17 Score=29.55 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=35.7
Q ss_pred CCCccccccccccccc---ceEecCccccccchhHHHHHH-hcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFEDTE---ILRLLPKCKHAFHISCIDQWL-EKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~WL-~~~~sCPlCR~~v~~ 150 (415)
....|.||-+.+.... .......|+--.|+.|.+-=. ..+..||-|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3469999999964333 222233477778999987643 346789999988863
No 121
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.72 E-value=10 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHh-----cCCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v 148 (415)
+...| ||...+......+..-.|..=||..|+.--.. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44567 99988764444555556888899999843111 234699997654
No 122
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.25 E-value=9.6 Score=38.35 Aligned_cols=52 Identities=21% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHh---c--CCCCCcccccccCCCCCc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---K--HSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~--~~sCPlCR~~v~~~~~~~ 155 (415)
...||+-...+..+. +-.. |.|.-|-+ +..||. . .-.||+|...+..++...
T Consensus 249 SL~CPlS~~ri~~Pv--Rg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp ESBCTTTSSBCSSEE--EETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred eecCCCccccccccC--cCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 358999988887774 4444 99983322 222332 2 335999998887666544
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.78 E-value=3.3 Score=31.65 Aligned_cols=44 Identities=32% Similarity=0.701 Sum_probs=27.9
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 146 (415)
.|.||...-. +..++.--.|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667765432 3344455568999999999853322 225888864
No 124
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.76 E-value=2.8 Score=32.78 Aligned_cols=44 Identities=36% Similarity=0.765 Sum_probs=29.0
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 146 (415)
.|.||...-. +..+...-.|...||..|+.+=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7888886532 3445455569999999999853322 225888854
No 125
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.09 E-value=3.9 Score=38.49 Aligned_cols=44 Identities=32% Similarity=0.701 Sum_probs=25.8
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 146 (415)
.|.+|...-. +..+...-.|...||..|+.+=|.. .-.||.|..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5777765422 3344455579999999999854332 225999964
No 126
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=50.24 E-value=11 Score=37.84 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=33.2
Q ss_pred CCcccccccccccccceEecCccccc--cchhHHHHHHhc--CCCCCcccccccCCCCCc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHA--FHISCIDQWLEK--HSSCPLCRLKVNAEDPTI 155 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~--FH~~CI~~WL~~--~~sCPlCR~~v~~~~~~~ 155 (415)
...||+-...+..+. +... |.|. |-..-+...... .-.||+|...+..++...
T Consensus 215 SL~CPlS~~ri~~P~--Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--RAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp ESBCTTTCSBCSSEE--EETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeeCCCccceeccCC--cCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 457999988887774 4444 9998 333222222222 235999999887766544
No 127
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=49.45 E-value=13 Score=26.42 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=29.7
Q ss_pred cccccccccccccceEecC-ccccccchhHHHHH----HhcCCCCCccc
Q 041871 102 ECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQW----LEKHSSCPLCR 145 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~W----L~~~~sCPlCR 145 (415)
.|.+|...+.++...+..- .|.-=||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789988886665555555 58878999997431 12455699885
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=49.36 E-value=2.9 Score=35.60 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=31.6
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK 147 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 147 (415)
...|..|...|..-..--....||.+||..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 458999999997554333445699999999976654445567777443
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.25 E-value=9.1 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
+...|.+|...|..-..--....||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45689999999875443333446999999998544
No 130
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.56 E-value=11 Score=30.09 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW 134 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 134 (415)
+...|.+|...|..-..-.....||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456899999998754433344469999999996654
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=47.18 E-value=12 Score=30.96 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=29.3
Q ss_pred Ccccccccccc------cccceEecCccccccchhHHHHHH------h-cCCCCCccc
Q 041871 101 LECAVCLSKFE------DTEILRLLPKCKHAFHISCIDQWL------E-KHSSCPLCR 145 (415)
Q Consensus 101 ~~C~ICle~~~------~~~~~~~lp~C~H~FH~~CI~~WL------~-~~~sCPlCR 145 (415)
..|.||+..-. .+..++.-..|+..||..|+.... . ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 47999987541 233555555699999999987542 1 233577764
No 132
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.09 E-value=2.7 Score=28.11 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=13.7
Q ss_pred cCCCcccccccccccccce
Q 041871 98 KQGLECAVCLSKFEDTEIL 116 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~ 116 (415)
.++..||||+..+...+.+
T Consensus 3 ~EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSADEL 21 (34)
T ss_dssp SEEEECTTTCCEESSHHHH
T ss_pred CcccCCcHHHHHcCCHHHH
Confidence 3457899999888766544
No 133
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=47.04 E-value=12 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=25.8
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
.+...|.+|...|..-..--....||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345689999999975543333446999999999654
No 134
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=46.22 E-value=3.6 Score=32.23 Aligned_cols=44 Identities=34% Similarity=0.716 Sum_probs=28.1
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc----C-CCCCcccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----H-SSCPLCRL 146 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~-~sCPlCR~ 146 (415)
.|.||...- .+..+...-.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666553 33345555569999999999865432 1 35888865
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.99 E-value=9.1 Score=35.10 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
++..|.+|...|..-..--....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45799999999865433333446999999988543
No 136
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.92 E-value=12 Score=30.28 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=28.7
Q ss_pred cCCCcccccccccccccceEecCc--cc-cccchhHHHHHHhc----CCCCCcccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPK--CK-HAFHISCIDQWLEK----HSSCPLCRLKV 148 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~v 148 (415)
.+..-| ||..... + .++..-. |. .-||..|+. |.. +-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 445667 9988653 3 2334444 55 579999986 322 23599997643
No 137
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=45.70 E-value=29 Score=24.11 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=18.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 041871 24 KPSLAVVIGILCVMFILTFILLLYAKF 50 (415)
Q Consensus 24 ~~~i~IvIgIL~vi~ll~~Ill~~~r~ 50 (415)
-|..+|++++++.++++.++.+...++
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666777777777777766666654
No 138
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.61 E-value=19 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041871 28 AVVIGILCVMFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 28 ~IvIgIL~vi~ll~~Ill~~~r~c~r~~~ 56 (415)
+|..+++..++++.++.+....|.+|++.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 45567777777777888777777776644
No 139
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.78 E-value=15 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.0
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
.+...|.+|...|..-..--....||++||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345689999999975543333446999999999654
No 140
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.67 E-value=19 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.430 Sum_probs=32.9
Q ss_pred cCCCccccccccc-ccccceEecCccccccchhHHHHHHh--cCCCCCcccc
Q 041871 98 KQGLECAVCLSKF-EDTEILRLLPKCKHAFHISCIDQWLE--KHSSCPLCRL 146 (415)
Q Consensus 98 ~e~~~C~ICle~~-~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~sCPlCR~ 146 (415)
.+...|.||...- ..+..++....|.-.||..|+..-.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567999998763 34445666667999999999875221 1224888854
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=44.55 E-value=16 Score=30.36 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=31.8
Q ss_pred CcCCCcccccccccccccceEecC--ccccccchhHHHHHHhcC----CCCCcccccccCC
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLP--KCKHAFHISCIDQWLEKH----SSCPLCRLKVNAE 151 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~WL~~~----~sCPlCR~~v~~~ 151 (415)
..++..|.+|.+ .+ .++... .|...||..|+. |... -.||.|.-.+...
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345678999983 23 344443 488999999997 4432 2499886555443
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.12 E-value=14 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=23.3
Q ss_pred CcccccccccccccceEecCccccccchhHHH
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCID 132 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~ 132 (415)
..|.+|...|..-..--....||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999999987543333344699999999854
No 143
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.60 E-value=7.7 Score=28.98 Aligned_cols=42 Identities=26% Similarity=0.725 Sum_probs=29.0
Q ss_pred CcccccccccccccceEecCccccccchhHHHHHH-hcCCCCCcc
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-EKHSSCPLC 144 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL-~~~~sCPlC 144 (415)
..|--|...|.... ....++|++.||.+| +..+ ..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 36999999985432 245678999999999 3332 223469988
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.13 E-value=11 Score=34.90 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=25.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ 133 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 133 (415)
+...|.+|...|..-..-.....||++||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45689999999875543334456999999988543
No 145
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.94 E-value=17 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=24.3
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHH
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCID 132 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~ 132 (415)
.+...|.+|...|..-..---...||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34568999999986543222334699999998843
No 146
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.77 E-value=12 Score=32.14 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=21.4
Q ss_pred cCCCcccccccccc-cccceEecCccccccchhH
Q 041871 98 KQGLECAVCLSKFE-DTEILRLLPKCKHAFHISC 130 (415)
Q Consensus 98 ~e~~~C~ICle~~~-~~~~~~~lp~C~H~FH~~C 130 (415)
.+...|.+|...|. ..........|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 35679999999984 2223344445777776655
No 147
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.06 E-value=5.7 Score=39.57 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHH
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL 135 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL 135 (415)
+...|.+|...|..-..-.....||++||..|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4568999999986443222334699999999987653
No 148
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.04 E-value=40 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=14.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHH
Q 041871 22 NFKPSLAVVIGILCVMFILTFILLLYAK 49 (415)
Q Consensus 22 ~f~~~i~IvIgIL~vi~ll~~Ill~~~r 49 (415)
+...+.+-+++-+++++++.++.++|.+
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 3344555666544444444455555544
No 149
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.85 E-value=12 Score=30.70 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=33.6
Q ss_pred CCcccccccccccccceEecC-ccccccchhHHHHH------Hh----cCCCCCcccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQW------LE----KHSSCPLCRLKV 148 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~W------L~----~~~sCPlCR~~v 148 (415)
...|+||...+.+....+..- .|.-=||..|+.-= +. ..-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999986665555553 58888999997321 10 234699998754
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.11 E-value=30 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=29.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
....|+.|-..+...+..+.. -+..||..| ..|-.|...+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 346899999888764433322 468899887 56889988874
No 151
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=38.09 E-value=21 Score=27.26 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=28.4
Q ss_pred cCCCcccccccccccccceEecCc--cc-cccchhHHHHHHhc----CCCCCccccc
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPK--CK-HAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
.+..-| ||..... + .++..-. |. .-||..|+. |.. .-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345677 8987643 3 3444445 55 589999987 332 2359999764
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.55 E-value=35 Score=24.89 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=30.2
Q ss_pred CCCccccccccccc--ccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 99 QGLECAVCLSKFED--TEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 99 e~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
....|+-|-..+.. ...++.. -+..||..| ..|-.|...+..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 35689999999875 3333322 578899888 579999888753
No 153
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.43 E-value=32 Score=25.00 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
...|+.|-..+...+.++.. -+..||..| ..|-.|...+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCCC
Confidence 45899999998765443322 578899888 5688998877543
No 154
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.06 E-value=31 Score=25.46 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
....|+-|-..+...+.+... -+..||..| ..|-.|...+...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 456899999998765544322 477899888 5688898877643
No 155
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.11 E-value=7 Score=29.69 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHH----hcCCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL----EKHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL----~~~~sCPlCR~~v 148 (415)
+...| ||......+...+..-.|..=||..|+.--- ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 45578 7988766665455555688889999975421 1234599997643
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.04 E-value=4 Score=33.93 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=29.9
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc----CCCCCcccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLKV 148 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~v 148 (415)
.|.||...-..+ .+..-..|...||..|+.+=|.. .-.||.|...+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577887654333 44455569999999999853332 22488886544
No 157
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.74 E-value=27 Score=25.88 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=27.3
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.|+.|-..+..++.+.. -+..||..| ..|..|...+...
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCCC
Confidence 58888888775554432 367888877 5688888877543
No 158
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=32.37 E-value=6.4 Score=32.22 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=28.9
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK 147 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 147 (415)
.|.||...-.. ..+.....|...||..|+.+=+.. .-.||.|...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 56677665333 345555579999999999864432 2248888553
No 159
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.70 E-value=38 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
...|+.|-..+...+.++.. -+..||..| ..|-.|...+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 45899999998876544332 467899887 5688998877543
No 160
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.68 E-value=19 Score=27.46 Aligned_cols=47 Identities=23% Similarity=0.601 Sum_probs=30.9
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHH------H---hcCCCCCcccccc
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW------L---EKHSSCPLCRLKV 148 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W------L---~~~~sCPlCR~~v 148 (415)
...| ||...+... ..+..-.|..=||..|+.-- + ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 898887643 34444468888999998421 1 1356799997654
No 161
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.05 E-value=19 Score=29.70 Aligned_cols=13 Identities=23% Similarity=0.922 Sum_probs=11.1
Q ss_pred ccchhHHHHHHhc
Q 041871 125 AFHISCIDQWLEK 137 (415)
Q Consensus 125 ~FH~~CI~~WL~~ 137 (415)
-||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 162
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.94 E-value=19 Score=29.64 Aligned_cols=12 Identities=33% Similarity=0.988 Sum_probs=10.8
Q ss_pred ccchhHHHHHHh
Q 041871 125 AFHISCIDQWLE 136 (415)
Q Consensus 125 ~FH~~CI~~WL~ 136 (415)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.45 E-value=50 Score=24.38 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
....|+.|-..+...+.+.. -+..||..| ..|..|...|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 35689999999886665432 577899888 5699998887643
No 164
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.88 E-value=97 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041871 20 VSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRA 54 (415)
Q Consensus 20 ~~~f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~r~ 54 (415)
...++.++.-+++-++++.+++++++-+..|.+.+
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 35677777777777777777888888777776555
No 165
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=28.82 E-value=12 Score=28.27 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=30.4
Q ss_pred CcCCCcccccccccccccceEecCccccccchhHHHHHH---hcCCCCCcccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL---EKHSSCPLCRL 146 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL---~~~~sCPlCR~ 146 (415)
..+...| ||..... +...+..-.|..=||..|+.--- ...-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456678 9988765 33344455688889999985421 12335888854
No 166
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.53 E-value=26 Score=30.77 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCCccccccccccccc-ceEecCccccccchhHH
Q 041871 99 QGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCI 131 (415)
Q Consensus 99 e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI 131 (415)
....|.+|...|.--. ...+...|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4679999999864321 23344458888887774
No 167
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=28.39 E-value=48 Score=22.15 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 041871 30 VIGILCVMFILT 41 (415)
Q Consensus 30 vIgIL~vi~ll~ 41 (415)
++++++.+.++.
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 344433333333
No 168
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.17 E-value=47 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
...|+.|-..+...+.++.. -+..||..| ..|-.|...+...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 45899999998766554332 477899888 5788998877543
No 169
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.93 E-value=56 Score=24.74 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=31.4
Q ss_pred cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
.....|+.|-..+...+.+.. -+..||..| ..|-.|...|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 345689999999866555432 577899988 5688998877644
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=27.57 E-value=56 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=22.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhh-cccC
Q 041871 23 FKPSLAVVIGILCVMFILTFILLLYAKFCH-RASS 56 (415)
Q Consensus 23 f~~~i~IvIgIL~vi~ll~~Ill~~~r~c~-r~~~ 56 (415)
++.....++.++..++.+.++..+.+.+|- .+++
T Consensus 3 l~~~~p~~LivlGg~~~lll~~glcI~ccvkcrhR 37 (70)
T 2klu_A 3 LVPRGSMALIVLGGVAGLLLFIGLGIFFSVRSRHR 37 (70)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cchhhHHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Confidence 566677778777777776666666666565 4444
No 171
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.76 E-value=49 Score=25.03 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=30.4
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
....|+-|-..+...+.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45689999999876655443 467899888 57999988775
No 172
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.34 E-value=80 Score=22.15 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041871 27 LAVVIGILCVMFILTFILLLYAKFCHRASS 56 (415)
Q Consensus 27 i~IvIgIL~vi~ll~~Ill~~~r~c~r~~~ 56 (415)
...+.+.++.++++.++.+.+.-|.+|++.
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 455777788866556666666667766654
No 173
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=26.27 E-value=8.6 Score=28.92 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=27.3
Q ss_pred CCCcccccccccccccceEecC--ccccccchhHHHHH---Hh-----cCCCCCcccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLP--KCKHAFHISCIDQW---LE-----KHSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~W---L~-----~~~sCPlCR~ 146 (415)
+...| ||-.....+..+ ..- .|..=||..|+.-- .. .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34567 797665555433 332 48778999997321 00 1245999975
No 174
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=26.24 E-value=15 Score=27.03 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=26.3
Q ss_pred CCCcccccccccccccceEecCc--cc-cccchhHHHHHHhc----CCCCCcccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPK--CK-HAFHISCIDQWLEK----HSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 146 (415)
+..-| ||..... + .++..-. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 8987642 3 3444445 44 579999987 332 235888854
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.82 E-value=41 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
....|+.|-..+...+.++.. -+..||..| ..|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 345899999998876654332 467899888 3688888877544
No 176
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.62 E-value=17 Score=26.68 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=27.1
Q ss_pred CCCcccccccccccccceEecCc--cc-cccchhHHHHHHhc----CCCCCcccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPK--CK-HAFHISCIDQWLEK----HSSCPLCRL 146 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 146 (415)
+..-| ||..... + .++..-. |. .-||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 8987642 3 3444445 65 589999987 332 235998854
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.59 E-value=70 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.436 Sum_probs=28.9
Q ss_pred CCccccccccccc--ccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 100 GLECAVCLSKFED--TEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 100 ~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
...|+.|-..+.. ....+.. -+..||..| ..|-.|...+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 4589999999875 3333222 577899988 57999988875
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.00 E-value=45 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.586 Sum_probs=26.7
Q ss_pred cccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
.|+.|-..+...+.++.. -+..||..| ..|-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCCC
Confidence 799998888765443222 477888887 56888887773
No 179
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.82 E-value=28 Score=26.77 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=30.6
Q ss_pred CCCcccccccccccccceEecC--ccccccchhHHHHHH---------hcCCCCCcccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLP--KCKHAFHISCIDQWL---------EKHSSCPLCRLKV 148 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~WL---------~~~~sCPlCR~~v 148 (415)
+...| ||-.....+. .+..- .|..=||..|+.--- ...-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 8988754443 33443 588899999985311 1234699997643
No 180
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.51 E-value=6.5 Score=30.95 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=14.6
Q ss_pred EecCccccccchhHHHHHH
Q 041871 117 RLLPKCKHAFHISCIDQWL 135 (415)
Q Consensus 117 ~~lp~C~H~FH~~CI~~WL 135 (415)
+..|.|++.||..|-..|=
T Consensus 44 v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp EECTTTCCEECSSSCSBCC
T ss_pred eEeCCCCCccccccCCchh
Confidence 4566799999988887773
No 181
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.34 E-value=67 Score=23.18 Aligned_cols=41 Identities=17% Similarity=0.453 Sum_probs=29.2
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~ 151 (415)
....|+.|-..+.. ..+.. -+..||..| ..|-.|...|...
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCCC
Confidence 45689999998873 33222 567899888 4788998887654
No 182
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.66 E-value=36 Score=21.60 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=20.1
Q ss_pred CcccccccccccccceEecCccccccchhHH
Q 041871 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCI 131 (415)
Q Consensus 101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI 131 (415)
..|+.|-..+-..+.+.. -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 479999888776665532 5678998883
No 183
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.44 E-value=84 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=14.7
Q ss_pred cccch-hhhHHHHHHHHHHHHHHHHHHHHH
Q 041871 22 NFKPS-LAVVIGILCVMFILTFILLLYAKF 50 (415)
Q Consensus 22 ~f~~~-i~IvIgIL~vi~ll~~Ill~~~r~ 50 (415)
+...+ +.++.|++++.+++.++..++...
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 455566655555555554444433
No 184
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.37 E-value=7.5 Score=30.28 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=12.7
Q ss_pred ccccccchhHHHHH
Q 041871 121 KCKHAFHISCIDQW 134 (415)
Q Consensus 121 ~C~H~FH~~CI~~W 134 (415)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998888
No 185
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.14 E-value=1.6e+02 Score=19.74 Aligned_cols=19 Identities=37% Similarity=0.481 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 041871 27 LAVVIGILCVMFILTFILL 45 (415)
Q Consensus 27 i~IvIgIL~vi~ll~~Ill 45 (415)
..+++++++.+.++..+.+
T Consensus 14 AGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4445555554444444433
No 186
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.03 E-value=67 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=24.1
Q ss_pred CcCCCcccccccccccccceEecCcc-ccccchhHHHH
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKC-KHAFHISCIDQ 133 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C-~H~FH~~CI~~ 133 (415)
..+..-|.||.++ ..++.+. | +-+||..|...
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 3456789999987 3466665 8 78999999665
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.61 E-value=78 Score=22.73 Aligned_cols=39 Identities=18% Similarity=0.465 Sum_probs=28.2
Q ss_pred CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150 (415)
Q Consensus 100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~ 150 (415)
...|+.|-..+... .+ .. -+..||..| ..|-.|...+..
T Consensus 5 ~~~C~~C~~~I~~~-~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GV--TY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS-EE--ES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccc-eE--EE-CccccCCCC--------CccCCCCCcCCc
Confidence 45899999988643 22 22 578899887 568899888753
No 188
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.27 E-value=18 Score=29.10 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=27.2
Q ss_pred CcCCCcccccccccccccceEecCccc---cccchhHHHHHH--hcCCCCCc-ccc
Q 041871 97 SKQGLECAVCLSKFEDTEILRLLPKCK---HAFHISCIDQWL--EKHSSCPL-CRL 146 (415)
Q Consensus 97 ~~e~~~C~ICle~~~~~~~~~~lp~C~---H~FH~~CI~~WL--~~~~sCPl-CR~ 146 (415)
..+..-| ||..... ++ ++..-.|. .-||..|+.--- ...-.||. |+.
T Consensus 23 ~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 3455677 9987533 33 44444554 579999985210 11335999 864
No 189
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.17 E-value=72 Score=23.76 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871 99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149 (415)
Q Consensus 99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~ 149 (415)
....|+.|-..+... .+ .. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FV--KL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS-CE--EC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCc-EE--EE-CcceeCcCc--------CeeCCCCCCCC
Confidence 456899999988753 22 22 578899988 46889988775
Done!