BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041875
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQL 65
+E C C KTV+ ++ + A+ +H CF+CS+CN KL +G ++S+ G +YCKPHF QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 66 FKETGSFTNKLKPAQKNG 83
FK G++ +G
Sbjct: 74 FKSKGNYDEGFGSGPSSG 91
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQL 157
++ C C+KTVYP+E++ + FH +CFRCS+ L+ +YA+L G +YCK HF QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 158 FKEKGCYN 165
FK KG Y+
Sbjct: 74 FKSKGNYD 81
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
G +KC C K V+ + V +G S+HK CF C C L + +YCK + +
Sbjct: 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGK 64
Query: 65 ---------------LFKETG-SFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKT 108
L + G S K + Q + T + G D C C +
Sbjct: 65 KYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQA 124
Query: 109 VYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEK 161
VY EKV G+S+HK+CFRC+ G L +++ A DG +YCK +A+ F K
Sbjct: 125 VYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 89 SKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGIL 148
SKF+ F G +KC++C +VY EKV G+ +HK CFRC+ G L +++ +G +
Sbjct: 27 SKFAQKF-GGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEI 85
Query: 149 YCKSHFAQLFKEKG 162
YCK +A+ F KG
Sbjct: 86 YCKGCYAKNFGPKG 99
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
G EKC AC +V+ + V G +HK CF+C+ C L + EG +YCK + +
Sbjct: 34 GGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 65 LFKETG 70
F G
Sbjct: 94 NFGPKG 99
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 89 SKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGIL 148
SKF+ F G +KC+ C +VY EKV G+ +HK CFRC+ G L +++ +G +
Sbjct: 27 SKFAQKF-GGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEI 85
Query: 149 YCKSHFAQLFKEKG 162
YCK +A+ F KG
Sbjct: 86 YCKGCYAKNFGPKG 99
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
G EKC C +V+ + V G +HK CF+C+ C L + EG +YCK + +
Sbjct: 34 GGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 65 LFKETG 70
F G
Sbjct: 94 NFGPKG 99
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156
G D C C + VY EKV G+S+HK+CFRC+ G L +++ A DG +YCK +A+
Sbjct: 6 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Query: 157 LFKEK 161
F K
Sbjct: 66 NFGPK 70
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
G + C C + V+ + V G S+HK CF+C+ C L + +G +YCK + +
Sbjct: 6 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Query: 65 LF 66
F
Sbjct: 66 NF 67
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 101 KCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
KC C K+VY EKV G+ +HKTCFRC+ G L +++ DG LYCK +A+ F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
KC C K+V+ + V G +HK CF+C+ C L N + +G LYCK + + F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156
G +KC +C +TVY E+V +G SFH+ CF C L +++ A D +YCKS + +
Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64
Query: 157 LFKEKG 162
+ KG
Sbjct: 65 KYGPKG 70
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 1 MAFCGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKP 60
M G KC AC +TV+ + V DG S+H+ CF C C L + + +YCK
Sbjct: 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60
Query: 61 HFEQLFKETG 70
+ + + G
Sbjct: 61 CYGKKYGPKG 70
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYC-KPHFEQLF 66
KC CDKTV+ + V++ G +HK C KC C+ L G + +G +C KP + LF
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 101 KCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYC-KSHFAQLF 158
KC C KTVY EKV+ G+ +HK C +C LT +A DG +C K +A LF
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCK-PHFEQLFK 67
KC CDK V+ + VT+ G +H+ C KC C L G + EG YC P + +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 68 ETG 70
G
Sbjct: 62 PKG 64
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 101 KCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSH-FAQLFK 159
KC C K VY E+VT G+ +H+ C +C G LT+ +A +G YC ++ +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 160 EKG 162
KG
Sbjct: 62 PKG 64
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 101 KCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCK 151
KC +C+KTVY E++ G SFHKTCF C L +++ AA + +YCK
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCK 59
KC AC+KTV+ + + +G S+HK CF C C L ++ E +YCK
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYA--ALDGILYCKSHF 154
G D C C + +Y LE++ V G FH++CFRC L Y DG YC H
Sbjct: 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
Query: 155 AQ 156
Q
Sbjct: 73 PQ 74
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSM--EGVLYCKPHF 62
G + C C + +++++ + +G +H+ CF+C C L G + +G YC H
Sbjct: 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
Query: 63 EQ 64
Q
Sbjct: 73 PQ 74
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 5 GTQEKCKACDKTVHIIDMVT-ADGISYHKICFKCSHCNGKLVMGN-FSSMEGVLYCK 59
G C AC +++ ++V A G YH CF CS C +LV G+ F + G L+C+
Sbjct: 65 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 121
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSM--EGVLYCKPHFE 63
+ ++C C + ++ A +H C KCS C +L SS G++ C+ +
Sbjct: 2 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 61
Query: 64 QLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVT-VEGESF 122
+LF +G+ C++C +++ E V +G +
Sbjct: 62 RLFGNSGA------------------------------CSACGQSIPASELVMRAQGNVY 91
Query: 123 HKTCFRCSH-GGCLLTTSSYAALDGILYCK 151
H CF CS L+ + ++G L+C+
Sbjct: 92 HLKCFTCSTCRNRLVPGDRFHYINGSLFCE 121
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 5 GTQEKCKACDKTVHIIDMVT-ADGISYHKICFKCSHCNGKLVMGN-FSSMEGVLYCK 59
G C AC +++ ++V A G YH CF CS C +LV G+ F + G L+C+
Sbjct: 67 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 123
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSM--EGVLYCKPHFE 63
+ ++C C + ++ A +H C KCS C +L SS G++ C+ +
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 64 QLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVT-VEGESF 122
+LF +G+ C++C +++ E V +G +
Sbjct: 64 RLFGNSGA------------------------------CSACGQSIPASELVMRAQGNVY 93
Query: 123 HKTCFRCSH-GGCLLTTSSYAALDGILYCK 151
H CF CS L+ + ++G L+C+
Sbjct: 94 HLKCFTCSTCRNRLVPGDRFHYINGSLFCE 123
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+V ++G YH+ CF C+ C + G F EG YC+ F+ LF
Sbjct: 27 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 102 CTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C CK P EK V GE +H+ CF C+ + +G YC+ F LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+V ++G YH+ CF C+ C + G F EG YC+ F+ LF
Sbjct: 23 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 102 CTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C CK P EK V GE +H+ CF C+ + +G YC+ F LF
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+V ++G YH+ CF C+ C + G F EG YC+ F+ LF
Sbjct: 27 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 102 CTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C CK P EK V GE +H+ CF C+ + +G YC+ F LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 22 MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+V ++G YH+ CF C+ C G F EG YC+ F+ LF
Sbjct: 27 IVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 102 CTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C C+ P E+ V GE +H+ CF C+ + +G YC+ F LF
Sbjct: 14 CQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 10 CKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
C C++ + +V A G S+H F C+HC + F +G LYC+ +E+ F
Sbjct: 28 CAHCNQVIRGPFLV-ALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 54/150 (36%), Gaps = 40/150 (26%)
Query: 10 CKACDKTVHIIDMVTADGIS--YHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67
C CD+ HI+D + +H C KCS C+ L FS E V YCK F FK
Sbjct: 9 CAGCDQ--HILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCKDDF---FK 62
Query: 68 ETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKV-TVEGESFHKTC 126
G+ KC +C+ + P + V + +H C
Sbjct: 63 RFGT-----------------------------KCAACQLGIPPTQVVRRAQDFVYHLHC 93
Query: 127 FRCSHGGCLLTTSS--YAALDGILYCKSHF 154
F C L T Y D L CK+ +
Sbjct: 94 FACVVCKRQLATGDEFYLMEDSRLVCKADY 123
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 9 KCKACDKTVHIIDMVT-ADGISYHKICFKCSHCNGKLVMGN-FSSME-GVLYCKPHFE 63
KC AC + +V A YH CF C C +L G+ F ME L CK +E
Sbjct: 67 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 54/150 (36%), Gaps = 40/150 (26%)
Query: 10 CKACDKTVHIIDMVTADGIS--YHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67
C CD+ HI+D + +H C KCS C+ L FS E V YCK F FK
Sbjct: 63 CAGCDQ--HILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCKDDF---FK 116
Query: 68 ETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKV-TVEGESFHKTC 126
G+ KC +C+ + P + V + +H C
Sbjct: 117 RFGT-----------------------------KCAACQLGIPPTQVVRRAQDFVYHLHC 147
Query: 127 FRCSHGGCLLTTSS--YAALDGILYCKSHF 154
F C L T Y D L CK+ +
Sbjct: 148 FACVVCKRQLATGDEFYLMEDSRLVCKADY 177
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 9 KCKACDKTVHIIDMVT-ADGISYHKICFKCSHCNGKLVMGN-FSSME-GVLYCKPHFE 63
KC AC + +V A YH CF C C +L G+ F ME L CK +E
Sbjct: 121 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 9 KCKACDKTVHIIDMVT-ADGISYHKICFKCSHCNGKLVMGN-FSSME-GVLYCKPHFE 63
KC AC + + +V A YH CF C CN +L G+ F ME G L CK +E
Sbjct: 67 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 102 CTSCKKTVYP-LEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYC 150
C CKKT+ P K+ +G S+H+TCF C + T S+ D +C
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFC 57
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 10 CKACDKTVHI-IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
C+ C KT+ + G S+H+ CF C C + +F + +C P +E+
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64
KC C++ V + + ++A +H CF C C G+F ++G +C+ H+
Sbjct: 17 KCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHH 71
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 90 KFSTMFCGTQDKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCL--LTTSSYAALDG 146
F MF KC C + V LE ++ +H CF C G C +T S+ LDG
Sbjct: 9 DFLAMF---SPKCGGCNRPV--LENYLSAMDTVWHPECFVC--GDCFTSFSTGSFFELDG 61
Query: 147 ILYCKSHF 154
+C+ H+
Sbjct: 62 RPFCELHY 69
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 4 CGTQE---KCKACDKTVHIIDM-VTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYC 58
C T+E KCK C K + D V G +HK CF CS+C + G+F YC
Sbjct: 9 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYC 67
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 102 CTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C CK+ + + + + +H +CF+C +L T Y + DG+ YC+S + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQF 73
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 10 CKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
C C + + + A +H CFKC C+ ++ G + S +GV YC+ + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCS-VILTGEYISKDGVPYCESDYHAQF 73
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 66
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 10 CKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69
C AC + + +V A G +H F C+ C + +G+ YC+ H+ QLF +
Sbjct: 8 CGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 102 CTSCKKTVYPLEKVTVE--GESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFK 159
C +C++ P+E V G+ +H F C+ + G+ YC++H+ QLF
Sbjct: 8 CGACRR---PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64
Query: 160 E 160
+
Sbjct: 65 D 65
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 5 GTQEKCKACDK-TVHIIDMVTADGISY-HKICFKCSHCNGKLVMGNFSSMEGVLYCKPH 61
G+ ++ CDK I+ V Y H CF C+ CN L + +EG LYC+ H
Sbjct: 20 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+C C KT+ VT +H+ C C+ C L F+S + YC F +LF
Sbjct: 17 RCARCSKTL-TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 101 KCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
+C C KT+ VT + +H+ C C+ L + + D YC + F +LF
Sbjct: 17 RCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
>pdb|1ZFO|A Chain A, Amino-Terminal Lim-Domain Peptide Of Lasp-1, Nmr
Length = 31
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 102 CTSCKKTVYPLEKVTVEGESFHKTCF 127
C C K VYP EKV + +HK CF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
>pdb|3GCE|A Chain A, Ferredoxin Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 121
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 22 MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFT 73
MV DG S + I CSH L MG F + + C H + TG+ T
Sbjct: 36 MVVRDGDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT 87
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 27 GISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
G ++H+ CF CS C L +F +G YC P +E F
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 102 CTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158
C CKK + VT + +HK CF C+ L+ + A D YC + F L+
Sbjct: 8 CVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 23 VTADGISY-----HKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLF 66
+T G++Y HK CF C+ C +L F++ + YC F L+
Sbjct: 15 ITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 13 CDKTVHIIDMVTADGISYHKICF--KCSHCNGKLVMGNFS 50
CD V+++D +GI C CS C GK+V G+
Sbjct: 18 CDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSID 57
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 23 VTADGISY-----HKICFKCSHCNGKLVMGNFSSMEGVLYC 58
+T+ GI+Y H CF C C+ KL F+++E YC
Sbjct: 15 ITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC 55
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 102 CTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCK--SHFAQLF 158
C C+K + K V + +H TCFRC+ L ++ A D + C +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 159 KEKGCYNHLTKTASQKKIVAASADQNPEAEAT 190
K KGC+ K IVA DQN E + T
Sbjct: 68 KCKGCF---------KAIVA--GDQNVEYKGT 88
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 KCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEG 54
+C +CD+ + ++V+A G +YH CF C+ C G+ + G
Sbjct: 17 RCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNG 61
>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|F Chain F, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|G Chain G, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|H Chain H, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
Length = 65
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 10 CKACDKTVHI-IDMVTADGISYHKI--CFKCSHCNGKLVMGNFSSMEGVLYC 58
C+ C + + VT + S+H CF CS C+ L+ F +EG+++C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 10 CKACDKTVHI-IDMVTADGISYHKI--CFKCSHCNGKLVMGNFSSMEGVLYC 58
C+ C + + VT + S+H CF CS C+ L+ F +EG+++C
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 117
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 65 LFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHK 124
+FK+ F N+ K +K LT SK + + G KC CKK +Y T E
Sbjct: 1 MFKD---FFNRTK--KKKYLTVQDSKNNDVPAGIMTKCPKCKKIMY-----TKELAENLN 50
Query: 125 TCFRCSHGGCLLTTSSYAALDGI 147
CF C H L ++Y ++ I
Sbjct: 51 VCFNCDHHIAL---TAYKRIEAI 70
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSM--EGVLYCKPHFE 63
+ ++C C + ++ A +H C KCS C +L SS G++ C+ +
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 64 QLF 66
+LF
Sbjct: 64 RLF 66
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 17 VHIIDMVTADGISYHKICF--KCSHCNGKLVMGNFS 50
V+I+D DGI C CS C GK+V G+
Sbjct: 22 VYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVD 57
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 GTQEKCKACDKTVHIIDM-VTADGISYHKICFKCSHCNGKLVMGN 48
G C +CDK + +M + YH CFKC+ C +G+
Sbjct: 8 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGD 52
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 GTQEKCKACDKTVHIIDM-VTADGISYHKICFKCSHCNGKLVMGN 48
G C +CDK + +M + YH CFKC+ C +G+
Sbjct: 64 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGD 108
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 GTQEKCKACDKTVHIIDM-VTADGISYHKICFKCSHCNGKLVMGN 48
G C +CDK + +M + YH CFKC+ C +G+
Sbjct: 6 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGD 50
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 101 KCTSCKKTVYPLEK----VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYC 150
KC CK + K V EG+S+H CF C L + +YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,739,967
Number of Sequences: 62578
Number of extensions: 220841
Number of successful extensions: 483
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 97
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)