Query 041875
Match_columns 195
No_of_seqs 215 out of 1291
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 7.4E-34 2.5E-38 220.7 12.5 166 1-167 1-184 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 4.7E-33 1.6E-37 203.6 9.6 124 7-162 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 5.3E-32 1.8E-36 196.8 9.9 121 6-158 2-125 (126)
4 1rut_X Flinc4, fusion protein 100.0 2.8E-31 9.7E-36 205.5 7.6 126 6-163 4-135 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 8.8E-30 3E-34 194.0 10.4 124 5-161 4-130 (169)
6 2jtn_A LIM domain-binding prot 100.0 2.5E-29 8.7E-34 193.6 10.9 122 4-158 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.3E-26 4.3E-31 162.0 7.7 97 5-133 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 2.7E-25 9.1E-30 160.6 4.4 116 5-164 3-120 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 8.2E-23 2.8E-27 145.8 5.5 110 5-165 1-113 (114)
10 2cuq_A Four and A half LIM dom 99.8 6.6E-22 2.3E-26 132.3 4.5 80 53-165 1-80 (80)
11 1x63_A Skeletal muscle LIM-pro 99.8 9.5E-22 3.3E-26 132.1 4.7 81 53-165 1-82 (82)
12 1x3h_A Leupaxin; paxillin fami 99.8 1.3E-21 4.4E-26 130.8 4.9 79 53-164 1-79 (80)
13 2ehe_A Four and A half LIM dom 99.8 9.3E-22 3.2E-26 132.2 1.2 80 53-164 1-81 (82)
14 2dlo_A Thyroid receptor-intera 99.8 1.1E-20 3.8E-25 126.6 5.4 78 53-164 2-80 (81)
15 1a7i_A QCRP2 (LIM1); LIM domai 99.8 3.1E-20 1.1E-24 124.4 4.3 67 1-67 1-67 (81)
16 2egq_A FHL1 protein; LIM domai 99.8 9.7E-20 3.3E-24 120.8 4.0 73 53-157 1-77 (77)
17 1x6a_A LIMK-2, LIM domain kina 99.8 7.6E-20 2.6E-24 122.5 3.5 78 53-163 1-80 (81)
18 2cu8_A Cysteine-rich protein 2 99.8 9.3E-19 3.2E-23 115.8 6.6 68 1-68 3-71 (76)
19 2d8y_A Eplin protein; LIM doma 99.8 1.5E-18 5.2E-23 118.7 7.7 75 98-172 14-88 (91)
20 2cu8_A Cysteine-rich protein 2 99.8 1.4E-18 4.7E-23 115.0 6.5 70 95-164 5-75 (76)
21 1iml_A CRIP, cysteine rich int 99.7 1.7E-18 5.8E-23 114.5 6.1 60 8-67 1-61 (76)
22 2dj7_A Actin-binding LIM prote 99.7 5.8E-18 2E-22 113.2 6.6 66 98-164 14-79 (80)
23 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.2E-18 7.6E-23 115.3 4.6 71 97-167 5-76 (81)
24 1v6g_A Actin binding LIM prote 99.7 3.7E-18 1.3E-22 114.2 4.4 78 54-164 2-80 (81)
25 2d8z_A Four and A half LIM dom 99.7 1.3E-17 4.3E-22 108.5 6.4 65 99-164 5-69 (70)
26 2cur_A Skeletal muscle LIM-pro 99.7 1.3E-17 4.3E-22 108.2 6.4 64 99-163 5-68 (69)
27 2dar_A PDZ and LIM domain prot 99.7 2.1E-17 7.2E-22 112.7 7.7 67 98-165 24-90 (90)
28 1wyh_A SLIM 2, skeletal muscle 99.7 9.7E-18 3.3E-22 109.6 5.6 66 100-165 6-72 (72)
29 2dj7_A Actin-binding LIM prote 99.7 1.4E-17 4.7E-22 111.3 6.1 64 5-69 13-76 (80)
30 1x4k_A Skeletal muscle LIM-pro 99.7 1.8E-17 6.2E-22 108.3 6.4 66 100-165 6-72 (72)
31 2cur_A Skeletal muscle LIM-pro 99.7 1.7E-17 5.8E-22 107.6 6.2 62 5-67 3-64 (69)
32 1iml_A CRIP, cysteine rich int 99.7 1.5E-17 5.2E-22 109.9 5.8 66 100-165 1-67 (76)
33 1nyp_A Pinch protein; LIM doma 99.7 1E-17 3.6E-22 107.7 4.5 61 100-161 6-66 (66)
34 2d8z_A Four and A half LIM dom 99.7 2.6E-17 9E-22 106.9 5.9 63 5-68 3-65 (70)
35 1g47_A Pinch protein; LIM doma 99.7 1.9E-17 6.6E-22 109.5 5.2 67 1-67 5-72 (77)
36 1nyp_A Pinch protein; LIM doma 99.7 1.7E-17 6E-22 106.6 4.6 62 6-68 4-65 (66)
37 2d8x_A Protein pinch; LIM doma 99.7 5.1E-17 1.7E-21 105.6 6.8 65 98-163 4-68 (70)
38 1x64_A Alpha-actinin-2 associa 99.7 7.3E-17 2.5E-21 109.8 7.9 66 97-163 23-88 (89)
39 2d8y_A Eplin protein; LIM doma 99.7 4.2E-17 1.4E-21 111.5 6.6 71 6-76 14-84 (91)
40 1x62_A C-terminal LIM domain p 99.7 3E-17 1E-21 109.3 5.7 65 98-163 14-78 (79)
41 1x68_A FHL5 protein; four-and- 99.7 1.4E-17 4.7E-22 110.1 4.0 67 100-166 6-75 (76)
42 2d8x_A Protein pinch; LIM doma 99.7 4.9E-17 1.7E-21 105.7 6.4 64 5-69 3-66 (70)
43 1x68_A FHL5 protein; four-and- 99.7 1.8E-17 6.3E-22 109.5 4.4 61 7-67 5-68 (76)
44 1x4l_A Skeletal muscle LIM-pro 99.7 3.3E-17 1.1E-21 107.1 5.5 64 99-162 5-71 (72)
45 1wyh_A SLIM 2, skeletal muscle 99.7 5.3E-17 1.8E-21 106.0 5.9 63 6-68 4-67 (72)
46 2dar_A PDZ and LIM domain prot 99.7 5.7E-17 1.9E-21 110.6 6.2 64 5-69 23-86 (90)
47 1j2o_A FLIN2, fusion of rhombo 99.7 6.7E-17 2.3E-21 115.0 6.7 66 98-163 2-69 (114)
48 1g47_A Pinch protein; LIM doma 99.7 5.6E-17 1.9E-21 107.3 5.8 65 99-163 11-76 (77)
49 1x4k_A Skeletal muscle LIM-pro 99.7 6.9E-17 2.3E-21 105.5 6.2 63 6-68 4-67 (72)
50 1x4l_A Skeletal muscle LIM-pro 99.7 4.5E-17 1.5E-21 106.4 4.9 64 5-68 3-69 (72)
51 1x62_A C-terminal LIM domain p 99.7 2.8E-17 9.5E-22 109.5 3.1 65 5-70 13-77 (79)
52 1x64_A Alpha-actinin-2 associa 99.7 9.3E-17 3.2E-21 109.3 5.6 64 5-69 23-86 (89)
53 1x61_A Thyroid receptor intera 99.7 1.4E-16 4.8E-21 104.0 6.2 63 5-67 3-66 (72)
54 2cup_A Skeletal muscle LIM-pro 99.7 6.4E-17 2.2E-21 112.5 4.3 72 99-170 5-78 (101)
55 1x3h_A Leupaxin; paxillin fami 99.6 2.5E-16 8.7E-21 104.9 6.2 61 6-67 14-74 (80)
56 2dlo_A Thyroid receptor-intera 99.6 2.6E-16 8.9E-21 105.1 6.2 63 4-67 12-75 (81)
57 2xqn_T Testin, TESS; metal-bin 99.6 1.2E-16 4.1E-21 115.5 4.4 71 100-170 4-75 (126)
58 2cor_A Pinch protein; LIM doma 99.6 1.5E-16 5.2E-21 105.9 4.5 64 99-164 15-78 (79)
59 1x63_A Skeletal muscle LIM-pro 99.6 3.5E-16 1.2E-20 104.6 6.3 64 7-70 15-79 (82)
60 2co8_A NEDD9 interacting prote 99.6 1E-16 3.5E-21 107.5 2.9 64 4-67 12-77 (82)
61 2cuq_A Four and A half LIM dom 99.6 5.2E-16 1.8E-20 103.3 6.1 63 6-69 14-76 (80)
62 2co8_A NEDD9 interacting prote 99.6 1.8E-16 6.2E-21 106.3 3.7 64 97-160 13-78 (82)
63 1wig_A KIAA1808 protein; LIM d 99.6 3.3E-16 1.1E-20 102.7 4.7 61 6-67 4-65 (73)
64 2ehe_A Four and A half LIM dom 99.6 2.5E-16 8.5E-21 105.4 4.2 62 6-67 14-76 (82)
65 3f6q_B LIM and senescent cell 99.6 4.6E-16 1.6E-20 101.3 5.3 60 100-159 12-72 (72)
66 2cor_A Pinch protein; LIM doma 99.6 4.8E-16 1.6E-20 103.5 5.3 63 4-68 12-74 (79)
67 1m3v_A FLIN4, fusion of the LI 99.6 3.6E-16 1.2E-20 112.5 5.1 73 99-171 5-82 (122)
68 1x61_A Thyroid receptor intera 99.6 7.1E-16 2.4E-20 100.6 6.0 62 99-160 5-67 (72)
69 3f6q_B LIM and senescent cell 99.6 4.6E-16 1.6E-20 101.3 5.0 63 5-67 9-72 (72)
70 1b8t_A Protein (CRP1); LIM dom 99.6 4.9E-16 1.7E-20 120.1 5.9 61 7-67 115-175 (192)
71 2jtn_A LIM domain-binding prot 99.6 3.7E-16 1.3E-20 119.9 4.4 70 99-169 60-129 (182)
72 2l4z_A DNA endonuclease RBBP8, 99.6 5.5E-16 1.9E-20 111.7 4.9 61 7-67 61-123 (123)
73 2l4z_A DNA endonuclease RBBP8, 99.6 1.3E-15 4.5E-20 109.7 5.5 62 98-159 60-123 (123)
74 1wig_A KIAA1808 protein; LIM d 99.6 7.7E-16 2.6E-20 100.9 3.5 63 99-162 5-68 (73)
75 2iyb_E Testin, TESS, TES; LIM 99.6 1.3E-15 4.4E-20 97.6 4.3 59 7-65 2-64 (65)
76 2egq_A FHL1 protein; LIM domai 99.6 2.4E-15 8.2E-20 99.4 5.3 59 6-64 14-76 (77)
77 2l3k_A Rhombotin-2, linker, LI 99.6 4.8E-16 1.6E-20 112.0 1.6 70 100-169 9-80 (123)
78 2iyb_E Testin, TESS, TES; LIM 99.5 4.1E-15 1.4E-19 95.2 4.8 58 100-157 3-64 (65)
79 2xjy_A Rhombotin-2; oncoprotei 99.5 7.5E-15 2.6E-19 106.6 5.8 68 100-167 3-74 (131)
80 1x6a_A LIMK-2, LIM domain kina 99.5 9.2E-15 3.1E-19 97.5 5.6 61 6-67 14-76 (81)
81 2l3k_A Rhombotin-2, linker, LI 99.5 8.8E-15 3E-19 105.3 5.4 62 8-69 9-72 (123)
82 2rgt_A Fusion of LIM/homeobox 99.5 1.2E-14 4.1E-19 110.1 6.1 70 99-169 6-75 (169)
83 1rut_X Flinc4, fusion protein 99.5 2.9E-14 9.9E-19 109.8 4.5 68 100-167 6-77 (188)
84 1v6g_A Actin binding LIM prote 99.4 5E-14 1.7E-18 93.9 3.4 60 7-67 15-75 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.4 9.4E-08 3.2E-12 51.6 1.3 29 7-35 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.3 1E-07 3.5E-12 51.4 0.9 28 100-127 4-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 90.6 0.39 1.3E-05 33.2 4.9 44 5-48 5-62 (133)
88 1t1h_A Gspef-atpub14, armadill 88.9 0.73 2.5E-05 28.9 4.7 50 33-112 7-56 (78)
89 4ap4_A E3 ubiquitin ligase RNF 88.4 0.42 1.4E-05 33.0 3.6 93 34-159 7-111 (133)
90 2djb_A Polycomb group ring fin 86.9 0.55 1.9E-05 29.1 3.1 51 34-114 15-65 (72)
91 2ysm_A Myeloid/lymphoid or mix 85.7 1.7 6E-05 29.4 5.5 95 6-156 6-104 (111)
92 2ct0_A Non-SMC element 1 homol 85.7 0.35 1.2E-05 30.8 1.7 33 3-35 11-43 (74)
93 2kre_A Ubiquitin conjugation f 83.1 1.9 6.6E-05 28.7 4.6 51 32-113 27-77 (100)
94 2y43_A E3 ubiquitin-protein li 82.3 1.3 4.6E-05 29.1 3.6 33 34-67 22-55 (99)
95 1jjd_A Metallothionein, SMTA; 82.0 0.86 3E-05 27.2 2.2 29 128-156 9-38 (55)
96 2kr4_A Ubiquitin conjugation f 81.6 1.6 5.6E-05 28.1 3.7 35 32-67 12-46 (85)
97 2ecy_A TNF receptor-associated 81.6 1.3 4.6E-05 26.7 3.1 49 34-112 15-63 (66)
98 1wgm_A Ubiquitin conjugation f 80.7 2.2 7.7E-05 28.3 4.3 35 32-67 20-55 (98)
99 1chc_A Equine herpes virus-1 r 79.4 2.2 7.5E-05 25.7 3.6 32 36-67 7-38 (68)
100 2xeu_A Ring finger protein 4; 78.9 0.89 3E-05 27.0 1.6 50 35-114 4-59 (64)
101 2csy_A Zinc finger protein 183 78.4 2.2 7.6E-05 26.8 3.5 32 35-67 16-47 (81)
102 4gne_A Histone-lysine N-methyl 78.2 4.6 0.00016 27.4 5.2 40 8-61 16-59 (107)
103 1g25_A CDK-activating kinase a 78.1 2.4 8.1E-05 25.4 3.5 52 35-115 4-59 (65)
104 1jjd_A Metallothionein, SMTA; 78.0 1.4 4.7E-05 26.3 2.2 30 36-65 9-39 (55)
105 2d8t_A Dactylidin, ring finger 78.0 2.9 0.0001 25.5 3.9 33 34-67 15-47 (71)
106 3lrq_A E3 ubiquitin-protein li 77.7 2 7E-05 28.4 3.3 50 35-114 23-73 (100)
107 2ckl_A Polycomb group ring fin 77.7 2.1 7.1E-05 28.6 3.4 33 34-67 15-48 (108)
108 2ysl_A Tripartite motif-contai 77.2 2.1 7.3E-05 26.1 3.1 33 34-67 20-52 (73)
109 4ayc_A E3 ubiquitin-protein li 77.0 2.7 9.2E-05 29.5 4.0 32 35-67 54-85 (138)
110 2ckl_B Ubiquitin ligase protei 76.1 2.7 9.3E-05 30.4 3.9 50 33-112 53-103 (165)
111 2ecw_A Tripartite motif-contai 75.9 3.5 0.00012 25.7 4.0 54 34-112 19-72 (85)
112 2gvi_A Conserved hypothetical 74.7 1.1 3.7E-05 34.2 1.4 30 127-156 173-202 (204)
113 2kwj_A Zinc finger protein DPF 74.3 1.1 3.9E-05 30.7 1.3 48 100-156 59-108 (114)
114 3vk6_A E3 ubiquitin-protein li 73.9 2.6 9E-05 28.3 2.9 65 37-136 4-71 (101)
115 2ecm_A Ring finger and CHY zin 73.8 3.7 0.00013 23.4 3.4 33 35-67 6-41 (55)
116 2c2l_A CHIP, carboxy terminus 73.5 3.3 0.00011 32.2 4.0 36 31-67 205-240 (281)
117 3hcs_A TNF receptor-associated 73.3 2.8 9.7E-05 30.4 3.4 33 34-67 18-50 (170)
118 1jm7_B BARD1, BRCA1-associated 73.0 2.5 8.7E-05 28.7 2.9 33 34-67 22-55 (117)
119 3hct_A TNF receptor-associated 72.6 3.3 0.00011 28.2 3.4 50 34-113 18-67 (118)
120 2gvi_A Conserved hypothetical 72.0 1 3.6E-05 34.3 0.7 31 34-64 172-202 (204)
121 2yur_A Retinoblastoma-binding 71.8 3 0.0001 25.7 2.8 33 34-67 15-48 (74)
122 2ecv_A Tripartite motif-contai 71.6 3.5 0.00012 25.7 3.2 32 35-67 20-51 (85)
123 2ect_A Ring finger protein 126 70.5 4.2 0.00014 25.2 3.3 33 35-67 16-50 (78)
124 2eqg_A Tumor necrosis factor, 70.2 2.2 7.5E-05 24.0 1.6 18 141-158 22-39 (49)
125 1rmd_A RAG1; V(D)J recombinati 70.2 3.9 0.00013 27.6 3.3 50 34-113 23-72 (116)
126 3ng2_A RNF4, snurf, ring finge 70.1 1.6 5.4E-05 26.5 1.2 48 35-112 11-64 (71)
127 2f42_A STIP1 homology and U-bo 70.0 4.8 0.00016 29.9 4.0 35 32-67 104-138 (179)
128 2ecn_A Ring finger protein 141 69.3 1.7 5.9E-05 26.4 1.2 32 34-67 15-46 (70)
129 1chc_A Equine herpes virus-1 r 69.2 2.8 9.5E-05 25.2 2.1 42 5-46 3-52 (68)
130 1x4j_A Ring finger protein 38; 69.0 3.1 0.00011 25.6 2.4 39 7-45 23-71 (75)
131 2ea6_A Ring finger protein 4; 68.6 1.7 5.7E-05 26.2 1.0 34 34-67 15-54 (69)
132 2ep4_A Ring finger protein 24; 68.3 5.8 0.0002 24.2 3.6 33 35-67 16-50 (74)
133 3fl2_A E3 ubiquitin-protein li 67.9 5.8 0.0002 27.1 3.9 48 34-111 52-99 (124)
134 3ztg_A E3 ubiquitin-protein li 67.5 4.6 0.00016 25.9 3.1 33 34-67 13-46 (92)
135 1iym_A EL5; ring-H2 finger, ub 67.2 6.4 0.00022 22.3 3.4 13 54-66 28-40 (55)
136 2bay_A PRE-mRNA splicing facto 66.9 4.9 0.00017 24.1 2.9 51 34-115 3-54 (61)
137 1z6u_A NP95-like ring finger p 64.6 7.1 0.00024 27.9 3.9 49 34-112 78-126 (150)
138 1e4u_A Transcriptional repress 62.9 6.3 0.00021 24.9 3.0 49 35-112 12-63 (78)
139 2ecl_A Ring-box protein 2; RNF 62.7 3.2 0.00011 26.2 1.6 41 6-46 14-76 (81)
140 3l11_A E3 ubiquitin-protein li 61.3 5.2 0.00018 26.9 2.5 32 35-67 16-47 (115)
141 2kiz_A E3 ubiquitin-protein li 60.7 9.6 0.00033 22.8 3.5 33 35-67 15-49 (69)
142 1jm7_A BRCA1, breast cancer ty 60.5 8 0.00027 25.6 3.4 32 35-67 22-53 (112)
143 2ct2_A Tripartite motif protei 60.2 9.9 0.00034 23.8 3.6 33 35-67 16-51 (88)
144 2cs3_A Protein C14ORF4, MY039 56.5 3.9 0.00013 26.3 1.1 32 35-66 16-50 (93)
145 2egp_A Tripartite motif-contai 56.4 4.5 0.00015 25.0 1.4 32 35-67 13-44 (79)
146 2cs3_A Protein C14ORF4, MY039 56.2 7.5 0.00026 25.0 2.4 55 99-164 15-69 (93)
147 2yu4_A E3 SUMO-protein ligase 54.1 11 0.00039 24.4 3.2 34 33-67 6-40 (94)
148 2e5r_A Dystrobrevin alpha; ZZ 53.7 13 0.00043 22.5 3.1 39 25-65 4-45 (63)
149 2d8v_A Zinc finger FYVE domain 53.1 5.4 0.00018 24.6 1.2 14 52-65 25-38 (67)
150 2ysj_A Tripartite motif-contai 52.5 16 0.00053 21.3 3.4 33 34-67 20-52 (63)
151 3knv_A TNF receptor-associated 51.1 4.4 0.00015 28.7 0.7 34 33-67 30-63 (141)
152 2ecg_A Baculoviral IAP repeat- 49.9 11 0.00037 23.2 2.4 30 35-65 26-56 (75)
153 2d8s_A Cellular modulator of i 48.4 14 0.00048 23.3 2.8 39 7-45 15-69 (80)
154 1weo_A Cellulose synthase, cat 46.1 23 0.00077 23.2 3.4 13 55-67 43-55 (93)
155 2vje_B MDM4 protein; proto-onc 45.4 22 0.00076 21.0 3.3 45 36-110 9-55 (63)
156 2l0b_A E3 ubiquitin-protein li 45.0 24 0.00082 22.5 3.6 35 33-67 39-75 (91)
157 3nw0_A Non-structural maintena 44.9 8.6 0.00029 29.8 1.6 40 98-137 179-228 (238)
158 3htk_C E3 SUMO-protein ligase 43.9 20 0.00069 28.3 3.6 35 32-67 179-214 (267)
159 1vq8_U 50S ribosomal protein L 42.5 11 0.00037 23.3 1.4 14 8-21 4-17 (66)
160 2jne_A Hypothetical protein YF 42.4 12 0.0004 25.0 1.7 33 100-139 62-94 (101)
161 3j21_V 50S ribosomal protein L 42.4 14 0.00049 22.7 2.0 25 7-31 4-31 (66)
162 1bor_A Transcription factor PM 42.3 9.6 0.00033 22.0 1.2 28 35-63 7-34 (56)
163 2ecj_A Tripartite motif-contai 39.3 28 0.00095 19.6 3.0 32 35-67 16-47 (58)
164 2jrp_A Putative cytoplasmic pr 38.6 16 0.00054 23.5 1.8 13 128-140 53-65 (81)
165 4ic3_A E3 ubiquitin-protein li 38.5 20 0.00068 21.9 2.3 30 35-65 25-55 (74)
166 2vnf_A ING 4, P29ING4, inhibit 38.1 23 0.00079 21.0 2.5 43 8-63 11-58 (60)
167 2dmj_A Poly (ADP-ribose) polym 36.1 13 0.00044 25.0 1.2 14 8-21 26-39 (106)
168 2ea5_A Cell growth regulator w 35.2 26 0.00088 21.2 2.4 30 35-65 16-46 (68)
169 3nw0_A Non-structural maintena 34.5 11 0.00037 29.2 0.7 11 100-110 218-228 (238)
170 3d00_A Tungsten formylmethanof 32.6 11 0.00039 28.2 0.5 25 126-156 163-187 (191)
171 1wen_A Inhibitor of growth fam 32.6 50 0.0017 20.3 3.5 43 8-63 17-64 (71)
172 3c6w_A P28ING5, inhibitor of g 32.1 25 0.00086 20.8 1.9 43 8-63 10-57 (59)
173 1v9x_A Poly (ADP-ribose) polym 31.3 19 0.00065 24.6 1.4 14 8-21 21-34 (114)
174 3odc_A Poly [ADP-ribose] polym 30.9 13 0.00044 25.3 0.5 15 7-21 19-33 (111)
175 2k16_A Transcription initiatio 30.5 23 0.00077 21.9 1.6 49 100-157 19-69 (75)
176 2vpb_A Hpygo1, pygopus homolog 29.9 19 0.00064 21.9 1.1 30 5-34 6-39 (65)
177 2g6q_A Inhibitor of growth pro 29.5 34 0.0012 20.4 2.2 43 8-63 12-59 (62)
178 2yho_A E3 ubiquitin-protein li 29.3 30 0.001 21.5 2.0 30 35-65 19-49 (79)
179 2vje_A E3 ubiquitin-protein li 29.0 38 0.0013 20.0 2.4 45 36-110 10-56 (64)
180 3od8_A Poly [ADP-ribose] polym 29.0 16 0.00056 25.1 0.7 15 7-21 38-52 (116)
181 1wfh_A Zinc finger (AN1-like) 28.5 36 0.0012 20.7 2.1 26 36-61 17-42 (64)
182 1vq8_Z 50S ribosomal protein L 27.9 42 0.0014 21.5 2.5 35 100-143 28-62 (83)
183 1wev_A Riken cDNA 1110020M19; 27.2 31 0.001 22.2 1.8 52 100-156 17-72 (88)
184 2zkr_u 60S ribosomal protein L 25.6 27 0.00091 25.3 1.4 14 8-21 4-17 (157)
185 1wg2_A Zinc finger (AN1-like) 25.4 38 0.0013 20.6 1.9 26 36-61 17-42 (64)
186 1znf_A 31ST zinc finger from X 24.8 30 0.001 15.3 1.1 12 127-138 2-13 (27)
187 3v43_A Histone acetyltransfera 23.9 45 0.0015 22.3 2.3 30 6-35 4-41 (112)
188 1weu_A Inhibitor of growth fam 23.8 65 0.0022 20.9 2.9 43 8-63 37-84 (91)
189 3izc_Z 60S ribosomal protein R 23.5 25 0.00086 25.4 0.9 14 8-21 4-17 (155)
190 2lo3_A SAGA-associated factor 23.5 20 0.00069 19.9 0.3 14 8-21 18-31 (44)
191 1wfp_A Zinc finger (AN1-like) 23.4 52 0.0018 20.6 2.3 27 36-62 27-53 (74)
192 1uw0_A DNA ligase III; DNA rep 23.1 25 0.00086 24.0 0.8 14 8-21 16-29 (117)
193 1ard_A Yeast transcription fac 22.8 34 0.0011 15.3 1.1 12 35-46 3-14 (29)
194 2yrc_A Protein transport prote 22.8 84 0.0029 18.6 3.1 33 98-135 8-42 (59)
195 4a17_T RPL24, 60S ribosomal pr 22.5 31 0.0011 25.0 1.2 26 6-31 4-32 (158)
196 3asl_A E3 ubiquitin-protein li 22.2 48 0.0016 20.3 1.9 8 28-35 41-48 (70)
197 3iz5_Z 60S ribosomal protein L 22.0 35 0.0012 24.8 1.4 16 6-21 4-19 (162)
198 2kvh_A Zinc finger and BTB dom 22.0 29 0.00098 15.5 0.7 12 127-138 4-15 (27)
199 2dip_A Zinc finger SWIM domain 21.9 65 0.0022 21.2 2.7 36 29-65 27-65 (98)
200 2yt5_A Metal-response element- 20.9 66 0.0022 19.0 2.4 54 5-64 4-61 (66)
201 2vut_I AREA, nitrogen regulato 20.8 69 0.0024 17.7 2.2 28 128-155 3-30 (43)
202 1wim_A KIAA0161 protein; ring 20.7 62 0.0021 20.5 2.4 13 146-158 27-39 (94)
203 2cs2_A Poly [ADP-ribose] polym 20.2 36 0.0012 23.9 1.1 14 8-21 28-41 (134)
204 2pv0_B DNA (cytosine-5)-methyl 20.2 1.1E+02 0.0038 25.4 4.3 16 147-162 115-130 (386)
205 1gh9_A 8.3 kDa protein (gene M 20.1 49 0.0017 20.5 1.6 29 100-139 5-33 (71)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=7.4e-34 Score=220.72 Aligned_cols=166 Identities=33% Similarity=0.640 Sum_probs=133.8
Q ss_pred CCcCCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccc-------
Q 041875 1 MAFCGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFT------- 73 (195)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~------- 73 (195)
|...++.++|..|+++|..++.|.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|++++...
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccE
Confidence 6777888999999999988888999999999999999999999999999999999999999999999875311
Q ss_pred ---cCCCccCC--CCCCCCC-----CCCccccCCCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeec
Q 041875 74 ---NKLKPAQK--NGLTRTP-----SKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAA 143 (195)
Q Consensus 74 ---~~~~~~~~--~~~~~~p-----~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~ 143 (195)
..++.... ......| ..+ ....++.++|.+|+++|.+.+.|.+.++.||.+||+|..|+++|.++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRM-AQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCcccc-ccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 11100000 0000111 011 111235678999999999888899999999999999999999999888999
Q ss_pred cCCccccHHHHHhhhcCCCc-cCCC
Q 041875 144 LDGILYCKSHFAQLFKEKGC-YNHL 167 (195)
Q Consensus 144 ~dg~~yC~~c~~~~f~~k~~-~~~~ 167 (195)
+||++||+.||.++|+++|. ++.+
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 99999999999999999998 5544
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=4.7e-33 Score=203.57 Aligned_cols=124 Identities=21% Similarity=0.484 Sum_probs=113.7
Q ss_pred CCcccccccccccCceEeeCCcccccCccccccccccCCC--CceeecCCeecchhhHHHhhccCCccccCCCccCCCCC
Q 041875 7 QEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVM--GNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGL 84 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
.++|..|+++|.+.++|.++|+.||++||+|..|+++|.. ..|+.++|++||+.||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 5799999999996668999999999999999999999964 589999999999999999998
Q ss_pred CCCCCCCccccCCCCC--cCccCCceeecCc-eEEECCceecccccccccCCcccc-cCCeeccCCccccHHHHHhhhcC
Q 041875 85 TRTPSKFSTMFCGTQD--KCTSCKKTVYPLE-KVTVEGESFHKTCFRCSHGGCLLT-TSSYAALDGILYCKSHFAQLFKE 160 (195)
Q Consensus 85 ~~~p~~~~~~~~~~~~--~C~~C~~~I~~~~-~v~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~c~~~~f~~ 160 (195)
+ +|.+|+++|.+.+ .|.+.++.||+.||+|..|+++|. +..|+..||++||..||.++|++
T Consensus 65 ---------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 65 ---------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ---------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred ---------------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 5 9999999999755 468999999999999999999995 56699999999999999999998
Q ss_pred CC
Q 041875 161 KG 162 (195)
Q Consensus 161 k~ 162 (195)
+|
T Consensus 130 ~~ 131 (131)
T 2xjy_A 130 NG 131 (131)
T ss_dssp HC
T ss_pred cC
Confidence 75
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=5.3e-32 Score=196.77 Aligned_cols=121 Identities=21% Similarity=0.519 Sum_probs=113.2
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCC
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLT 85 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
..++|.+|+++|..++++.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------------------
Confidence 35899999999997889999999999999999999999998899999999999999999998
Q ss_pred CCCCCCccccCCCCCcCccCCceeecCc-eEEECCceec--ccccccccCCcccccCCeeccCCccccHHHHHhhh
Q 041875 86 RTPSKFSTMFCGTQDKCTSCKKTVYPLE-KVTVEGESFH--KTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLF 158 (195)
Q Consensus 86 ~~p~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~~~~~H--~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f 158 (195)
++|.+|+++|.+++ .|.+.++.|| +.||+|..|+++|.+..|+..||++||..+|.++|
T Consensus 64 --------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 64 --------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp --------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred --------------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 89999999999754 5799999999 99999999999999888999999999998888876
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=2.8e-31 Score=205.51 Aligned_cols=126 Identities=21% Similarity=0.533 Sum_probs=112.5
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCC--CceeecCCeecchhhHHHhhccCCccccCCCccCCCC
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVM--GNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNG 83 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
..++|..|+++|.+.++|.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---------------- 67 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---------------- 67 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS----------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc----------------
Confidence 46899999999996668999999999999999999999985 689999999999999999997
Q ss_pred CCCCCCCCccccCCCCC--cCccCCceeecCce-EEECCceecccccccccCCcccc-cCCeeccCCccccHHHHHhhhc
Q 041875 84 LTRTPSKFSTMFCGTQD--KCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLT-TSSYAALDGILYCKSHFAQLFK 159 (195)
Q Consensus 84 ~~~~p~~~~~~~~~~~~--~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~c~~~~f~ 159 (195)
+ +|.+|+++|.+.+. |.+.++.||+.||+|..|+++|. +..|+..+|++||+.||.++|+
T Consensus 68 ----------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 68 ----------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI 131 (188)
T ss_dssp ----------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC
T ss_pred ----------------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhc
Confidence 5 79999999997664 58999999999999999999996 4569999999999999999999
Q ss_pred CCCc
Q 041875 160 EKGC 163 (195)
Q Consensus 160 ~k~~ 163 (195)
+++.
T Consensus 132 ~~~~ 135 (188)
T 1rut_X 132 NGHL 135 (188)
T ss_dssp ----
T ss_pred cccc
Confidence 9996
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=8.8e-30 Score=193.98 Aligned_cols=124 Identities=27% Similarity=0.508 Sum_probs=109.7
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGL 84 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
++.++|.+|+++|.+.++|.++|+.||++||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccc-----------------
Confidence 456899999999997678999999999999999999999998775 79999999999999998
Q ss_pred CCCCCCCccccCCCCCcCccCCceeecCceE-EECCceecccccccccCCccccc-CCee-ccCCccccHHHHHhhhcCC
Q 041875 85 TRTPSKFSTMFCGTQDKCTSCKKTVYPLEKV-TVEGESFHKTCFRCSHGGCLLTT-SSYA-ALDGILYCKSHFAQLFKEK 161 (195)
Q Consensus 85 ~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v-~~~~~~~H~~CF~C~~C~~~L~~-~~~~-~~dg~~yC~~c~~~~f~~k 161 (195)
++|.+|+++|.+.+.+ .+.++.||..||+|..|+++|.. ..|+ ..||++||+.||.++++..
T Consensus 66 ---------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 66 ---------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp ---------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred ---------------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 8999999999977765 79999999999999999999984 4554 4689999999999998764
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=2.5e-29 Score=193.57 Aligned_cols=122 Identities=26% Similarity=0.501 Sum_probs=108.7
Q ss_pred CCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCC
Q 041875 4 CGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNG 83 (195)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
....++|..|+++|...+++.++|+.||++||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc----------------
Confidence 4556899999999997678899999999999999999999998775 79999999999999998
Q ss_pred CCCCCCCCccccCCCCCcCccCCceeecCce-EEECCceecccccccccCCccccc-CCee-ccCCccccHHHHHhhh
Q 041875 84 LTRTPSKFSTMFCGTQDKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTT-SSYA-ALDGILYCKSHFAQLF 158 (195)
Q Consensus 84 ~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~C~~~L~~-~~~~-~~dg~~yC~~c~~~~f 158 (195)
++|.+|+++|.+.+. +.+.++.||+.||+|..|+++|.. ..|+ ..||++||+.||.++.
T Consensus 120 ----------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 120 ----------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp ----------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred ----------------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 899999999997665 479999999999999999999984 4554 5689999999998753
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=1.3e-26 Score=162.00 Aligned_cols=97 Identities=24% Similarity=0.533 Sum_probs=89.9
Q ss_pred CCCCccccccccccc-CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCC
Q 041875 5 GTQEKCKACDKTVHI-IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNG 83 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~-~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
...++|.+|+++|.. +++|.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---------------- 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---------------- 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----------------
Confidence 456899999999985 788999999999999999999999998899999999999999999987
Q ss_pred CCCCCCCCccccCCCCCcCccCCceeecCc-eEEECCceecccccccccCC
Q 041875 84 LTRTPSKFSTMFCGTQDKCTSCKKTVYPLE-KVTVEGESFHKTCFRCSHGG 133 (195)
Q Consensus 84 ~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~~~~~H~~CF~C~~C~ 133 (195)
++|.+|+++|.+++ .|.++++.||++||+|..|+
T Consensus 67 ----------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 ----------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ----------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ----------------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 89999999999765 57899999999999999986
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=2.7e-25 Score=160.58 Aligned_cols=116 Identities=21% Similarity=0.299 Sum_probs=99.5
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCC--CceeecCCeecchhhHHHhhccCCccccCCCccCCC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVM--GNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKN 82 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 82 (195)
...++|.+|+++|...++|.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~------------- 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS------------- 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-------------
Confidence 456899999999997767999999999999999999999973 57999999999999999999821
Q ss_pred CCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCC
Q 041875 83 GLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKG 162 (195)
Q Consensus 83 ~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~ 162 (195)
.+|.+|+++|.+. .|++.++ .+|.++.|+.+|++|||..||.+++.++|
T Consensus 70 -----------------~~C~~C~~~I~~~-~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~~~~g 118 (122)
T 1m3v_A 70 -----------------GAGGSGGHMGSGG-DVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFDAANG 118 (122)
T ss_dssp -----------------CSSSCSSCCSCCE-ESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTTCCSC
T ss_pred -----------------CccccCCCCcCch-heEEcCC-------------cCCCCCccEecCCEeEccCcchhchhhcC
Confidence 2999999999853 3444442 36778899999999999999999999988
Q ss_pred cc
Q 041875 163 CY 164 (195)
Q Consensus 163 ~~ 164 (195)
+-
T Consensus 119 ~~ 120 (122)
T 1m3v_A 119 ID 120 (122)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=8.2e-23 Score=145.80 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=91.8
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCC--CceeecCCeecchhhHHHhhccCCccccCCCccCCC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVM--GNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKN 82 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 82 (195)
++.++|.+|+++|...++|.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~--------------- 65 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG--------------- 65 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT---------------
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC---------------
Confidence 467899999999996668999999999999999999999985 589999999999999999998
Q ss_pred CCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccCCcc-cccCCeeccCCccccHHHHHhhhcCC
Q 041875 83 GLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCL-LTTSSYAALDGILYCKSHFAQLFKEK 161 (195)
Q Consensus 83 ~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~-L~~~~~~~~dg~~yC~~c~~~~f~~k 161 (195)
++|..|.. ++.| . |+.+ |.++.|+.+|++|||..||.++.+++
T Consensus 66 -----------------~~c~~c~~----~~~~------------~---~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~ 109 (114)
T 1j2o_A 66 -----------------SGGHMGSG----GDVM------------V---VGEPTLMGGEFGDEDERLITRLENTQFDAAN 109 (114)
T ss_dssp -----------------SCCSSCBS----CSCC------------C---SSCSSTTSSBCCCSSSCCCEEEECTTCCCTT
T ss_pred -----------------cccCcCCC----Ccee------------E---cCCccCCCCeeEEcCCEeecchhhhcccccc
Confidence 77776652 1111 1 3344 56778999999999999999999888
Q ss_pred CccC
Q 041875 162 GCYN 165 (195)
Q Consensus 162 ~~~~ 165 (195)
|+-+
T Consensus 110 g~~~ 113 (114)
T 1j2o_A 110 GIDD 113 (114)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8643
No 10
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=6.6e-22 Score=132.26 Aligned_cols=80 Identities=24% Similarity=0.483 Sum_probs=74.3
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccC
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHG 132 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C 132 (195)
+|++||+.||.++++ ++|.+|+++|. .+.|.+.++.||..||+|..|
T Consensus 1 gg~~yC~~cy~~~~~--------------------------------~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C 47 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA--------------------------------PRCARCSKTLT-QGGVTYRDQPWHRECLVCTGC 47 (80)
T ss_dssp CCCCSCCCCCCCCSS--------------------------------CCCTTTCCCCC-SCCEESSSSEECTTTCBCSSS
T ss_pred CCcEEcHHHHccccC--------------------------------CcCCCCCCEec-CcEEEECCchhhhhhCCcccC
Confidence 589999999998887 89999999998 468899999999999999999
Q ss_pred CcccccCCeeccCCccccHHHHHhhhcCCCccC
Q 041875 133 GCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN 165 (195)
Q Consensus 133 ~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~ 165 (195)
+++|.+..|+.+||++||+.||.++|+++++.+
T Consensus 48 ~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s~ 80 (80)
T 2cuq_A 48 QTPLAGQQFTSRDEDPYCVACFGELFASGPSSG 80 (80)
T ss_dssp CCBCTTCCEEECSSSEEEHHHHHHHTTCSTTCC
T ss_pred CCcCCCCeeEeECCEEECHHHHHHHcCCCCCCC
Confidence 999998889999999999999999999999743
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=9.5e-22 Score=132.09 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCce-EEECCceeccccccccc
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSH 131 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~ 131 (195)
++.+||+.||.++++ ++|.+|+++|.+++. |.+.++.||+.||+|..
T Consensus 1 ~~~~yC~~cy~~~~~--------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~ 48 (82)
T 1x63_A 1 GSSGSSGKCTTREDS--------------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSN 48 (82)
T ss_dssp CCSCCCCCCCSCCCS--------------------------------CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSS
T ss_pred CCCcCchhHHccccC--------------------------------CcCccCCcccccCceEEEECccccccccCchhh
Confidence 468999999998887 899999999997665 78999999999999999
Q ss_pred CCcccccCCeeccCCccccHHHHHhhhcCCCccC
Q 041875 132 GGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN 165 (195)
Q Consensus 132 C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~ 165 (195)
|+++|..+.|+.++|++||+.||.++|++++..+
T Consensus 49 C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~g 82 (82)
T 1x63_A 49 CKQVIGTGSFFPKGEDFYCVTCHETKFASGPSSG 82 (82)
T ss_dssp SCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSCC
T ss_pred CCCccCCCccEeeCCEEECHHHHHHHhCCCCCCC
Confidence 9999998899999999999999999999999754
No 12
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.3e-21 Score=130.83 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=73.9
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccC
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHG 132 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C 132 (195)
+|++||+.||.++++ ++|++|+++|. ++.|.+.++.||+.||+|..|
T Consensus 1 gg~~yC~~~y~~~~~--------------------------------~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C 47 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS--------------------------------PKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDC 47 (80)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------CBCTTTCCBCC-SSCEEETTEEECTTTCBCSSS
T ss_pred CCCccchhHHhhhcC--------------------------------CccccCCCeec-ceeEEECCCeEecCcCChhhC
Confidence 578999999998887 89999999999 478899999999999999999
Q ss_pred CcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 133 GCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 133 ~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
+++|.++.|+.+||++||+.||.++||++|.-
T Consensus 48 ~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 48 FTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 99999888999999999999999999999864
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-22 Score=132.17 Aligned_cols=80 Identities=20% Similarity=0.482 Sum_probs=73.6
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec-CceEEECCceeccccccccc
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP-LEKVTVEGESFHKTCFRCSH 131 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~-~~~v~~~~~~~H~~CF~C~~ 131 (195)
+|++||+.||.++++ ++|.+|+++|.+ +..|.++++.||+.||+|..
T Consensus 1 ~g~~yC~~~y~~~~~--------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~ 48 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA--------------------------------NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCR 48 (82)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTT
T ss_pred CCceechhHhCcccC--------------------------------CcCccCCCccccCcEEEEeCCccccccCCeecC
Confidence 589999999999987 899999999995 44567899999999999999
Q ss_pred CCcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 132 GGCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 132 C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
|+++|.++.|+.++|++||+.||.++|+++|.-
T Consensus 49 C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 49 CQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp TCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 999999889999999999999999999999863
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=1.1e-20 Score=126.64 Aligned_cols=78 Identities=15% Similarity=0.311 Sum_probs=70.8
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccC
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHG 132 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C 132 (195)
+|++||+.||. ++. ++|++|+++|. ++.|.+.++.||+.||+|..|
T Consensus 2 ~g~~yC~~~y~-~~~--------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C 47 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL--------------------------------EKCATCSQPIL-DRILRAMGKAYHPGCFTCVVC 47 (81)
T ss_dssp CCCCCCCCCCC-SSC--------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTCBCSSS
T ss_pred cCCEECHHHhh-cCC--------------------------------CccccCCCeec-ceeEEECCccccHHhcCcccC
Confidence 68999999998 554 89999999999 568899999999999999999
Q ss_pred CcccccCCeecc-CCccccHHHHHhhhcCCCcc
Q 041875 133 GCLLTTSSYAAL-DGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 133 ~~~L~~~~~~~~-dg~~yC~~c~~~~f~~k~~~ 164 (195)
+++|.+..|+.. ||++||+.||.++|+++|.-
T Consensus 48 ~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 48 HRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 999998888876 79999999999999999863
No 15
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=3.1e-20 Score=124.44 Aligned_cols=67 Identities=31% Similarity=0.652 Sum_probs=58.2
Q ss_pred CCcCCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 1 MAFCGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
|.|.++.++|..|+++|..++.|.++++.||++||+|..|+++|....|+.+++++||+.||.++|+
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 8899999999999999987889999999999999999999999998899999999999999999998
No 16
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.7e-20 Score=120.77 Aligned_cols=73 Identities=22% Similarity=0.478 Sum_probs=67.0
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec----CceEEECCceecccccc
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP----LEKVTVEGESFHKTCFR 128 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~----~~~v~~~~~~~H~~CF~ 128 (195)
++++||+.||.++++ ++|++|+++|.+ .+.|.+.++.||+.||+
T Consensus 1 g~~~yC~~cy~~~~~--------------------------------~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~ 48 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA--------------------------------KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFH 48 (77)
T ss_dssp CCSSCCTTCCCSCCC--------------------------------CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCB
T ss_pred CCCeEchhHhchhhC--------------------------------ccCcccCCcccCCCCCceeEEECcceeCcccCE
Confidence 478999999999887 899999999994 36789999999999999
Q ss_pred cccCCcccccCCeeccCCccccHHHHHhh
Q 041875 129 CSHGGCLLTTSSYAALDGILYCKSHFAQL 157 (195)
Q Consensus 129 C~~C~~~L~~~~~~~~dg~~yC~~c~~~~ 157 (195)
|..|+++|.+..|+.++|+|||+.||.++
T Consensus 49 C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 49 CKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred ehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 99999999988899999999999999763
No 17
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=7.6e-20 Score=122.49 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=70.5
Q ss_pred CCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccC
Q 041875 53 EGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHG 132 (195)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C 132 (195)
++.+||+.||.++++ ++|.+|+++|. ++.|.+.++.||++||+|..|
T Consensus 1 g~~~yC~~~y~~~~~--------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C 47 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG--------------------------------EFCHGCSLLMT-GPFMVAGEFKYHPECFACMSC 47 (81)
T ss_dssp CCCCCCCCCSSCCSS--------------------------------CBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTT
T ss_pred CCCccchhHHhhhcC--------------------------------CcCccCCCCcC-ceEEEECCceeccccCCccCC
Confidence 468999999999987 89999999999 777899999999999999999
Q ss_pred Cccccc-CCee-ccCCccccHHHHHhhhcCCCc
Q 041875 133 GCLLTT-SSYA-ALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 133 ~~~L~~-~~~~-~~dg~~yC~~c~~~~f~~k~~ 163 (195)
+++|.. ..|+ ..+|++||+.||.++|+++++
T Consensus 48 ~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 48 KVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 999974 5677 589999999999999998864
No 18
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=9.3e-19 Score=115.77 Aligned_cols=68 Identities=34% Similarity=0.759 Sum_probs=64.4
Q ss_pred CCcCCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecch-hhHHHhhcc
Q 041875 1 MAFCGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCK-PHFEQLFKE 68 (195)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~c~~~~~~~ 68 (195)
|.|++..++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+.+++++||+ .||.++|++
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~ 71 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCS
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhccc
Confidence 67889999999999999988899999999999999999999999988999999999999 799999983
No 19
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.5e-18 Score=118.70 Aligned_cols=75 Identities=43% Similarity=0.891 Sum_probs=69.4
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccCCCCCcch
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYNHLTKTAS 172 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~~~~~~~~ 172 (195)
+..+|.+|+++|.+.+.|.+.++.||..||+|..|+++|..+.|+.+||++||+.||.++|+++|.+...+....
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~ 88 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGP 88 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCC
Confidence 348999999999987889999999999999999999999988899999999999999999999999888877654
No 20
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.4e-18 Score=114.97 Aligned_cols=70 Identities=36% Similarity=0.638 Sum_probs=64.6
Q ss_pred cCCCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccH-HHHHhhhcCCCcc
Q 041875 95 FCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCK-SHFAQLFKEKGCY 164 (195)
Q Consensus 95 ~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~-~c~~~~f~~k~~~ 164 (195)
+.+..++|.+|+++|.+++.|.+.++.||+.||+|..|+++|.++.|+.+||++||+ .||.++|+++|.-
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 445568999999999988899999999999999999999999988899999999999 7999999999863
No 21
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.7e-18 Score=114.51 Aligned_cols=60 Identities=37% Similarity=0.827 Sum_probs=57.3
Q ss_pred CcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecch-hhHHHhhc
Q 041875 8 EKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCK-PHFEQLFK 67 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~c~~~~~~ 67 (195)
++|.+|+++|..++.|.++|+.||++||+|..|+++|.++.|+.+++++||+ .||.++|+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 5799999999988899999999999999999999999998999999999999 69999998
No 22
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.8e-18 Score=113.15 Aligned_cols=66 Identities=24% Similarity=0.600 Sum_probs=61.4
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
+.++|.+|+++|..++.|.++++.||+.||+|..|+++|.+ .|+.+||+|||+.||.++|+++|+-
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 34899999999998889999999999999999999999985 6999999999999999999999964
No 23
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.73 E-value=2.2e-18 Score=115.32 Aligned_cols=71 Identities=37% Similarity=0.725 Sum_probs=58.2
Q ss_pred CCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc-cCCC
Q 041875 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC-YNHL 167 (195)
Q Consensus 97 ~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~-~~~~ 167 (195)
++.++|.+|+++|.+.+.|.+.++.||+.||+|..|+++|..+.|+.+||++||+.||.++|+++|. ++.+
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g 76 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQG 76 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCc
Confidence 3458999999999888889999999999999999999999988899999999999999999999997 5433
No 24
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=3.7e-18 Score=114.21 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=68.8
Q ss_pred CeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEEECCceecccccccccCC
Q 041875 54 GVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGG 133 (195)
Q Consensus 54 g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~ 133 (195)
+.+||+.||.++|+ ++|++|+++|. ++.|.+.++.||+.||+|..|+
T Consensus 2 ~~~yC~~dy~~~~~--------------------------------~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~ 48 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG--------------------------------TRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCR 48 (81)
T ss_dssp CCCCCCSCGGGSCC--------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSC
T ss_pred CCCcchHHHHhHhC--------------------------------CcCccccCEec-cceEEECCceeCccCCccccCC
Confidence 56899999999998 89999999999 6789999999999999999999
Q ss_pred cccccCCeeccCC-ccccHHHHHhhhcCCCcc
Q 041875 134 CLLTTSSYAALDG-ILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 134 ~~L~~~~~~~~dg-~~yC~~c~~~~f~~k~~~ 164 (195)
++|..+.++..++ .+||..||.++++..++-
T Consensus 49 ~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~s~ 80 (81)
T 1v6g_A 49 LPFPPGDRVTFNGKECMCQKCSLPVSVSGPSS 80 (81)
T ss_dssp CCCCSSSCEEEETTEEEEHHHHSCCSSCCCCC
T ss_pred CCCCCCCEEEeCCCCEEChhhhcccCCCCCCC
Confidence 9998766666655 579999999988887653
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.3e-17 Score=108.48 Aligned_cols=65 Identities=28% Similarity=0.576 Sum_probs=60.8
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
.++|.+|+++|. .+.|.+.++.||+.||+|..|+++|.+..|+.+||++||+.||.++|+++|+-
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 5 SSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 389999999998 56789999999999999999999999888999999999999999999999964
No 26
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.3e-17 Score=108.23 Aligned_cols=64 Identities=19% Similarity=0.522 Sum_probs=60.3
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
.++|.+|+++|. ++.|.+.++.||+.||+|..|+++|.+..|+.+||++||+.||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 5 SSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred cCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 489999999998 5788999999999999999999999988899999999999999999999984
No 27
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.1e-17 Score=112.74 Aligned_cols=67 Identities=19% Similarity=0.461 Sum_probs=62.2
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccC
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN 165 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~ 165 (195)
..++|.+|+++|. ++.|.+.++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++|+.+
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s~ 90 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSSG 90 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCCC
T ss_pred CCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCCC
Confidence 4589999999997 778899999999999999999999998889999999999999999999999753
No 28
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=9.7e-18 Score=109.57 Aligned_cols=66 Identities=27% Similarity=0.577 Sum_probs=61.4
Q ss_pred CcCccCCceeecC-ceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccC
Q 041875 100 DKCTSCKKTVYPL-EKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN 165 (195)
Q Consensus 100 ~~C~~C~~~I~~~-~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~ 165 (195)
++|.+|+++|.+. +.|.+.++.||..||+|..|+++|.++.|+.++|++||+.||.++|+++|+.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~~ 72 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSSG 72 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCCC
Confidence 8999999999975 56789999999999999999999998889999999999999999999999743
No 29
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.4e-17 Score=111.29 Aligned_cols=64 Identities=25% Similarity=0.570 Sum_probs=58.8
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
.+.++|..|+++|..++.|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSG 76 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCC
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCC
Confidence 356799999999998889999999999999999999999985 7999999999999999999843
No 30
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.8e-17 Score=108.25 Aligned_cols=66 Identities=27% Similarity=0.550 Sum_probs=61.5
Q ss_pred CcCccCCceeecCc-eEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccC
Q 041875 100 DKCTSCKKTVYPLE-KVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN 165 (195)
Q Consensus 100 ~~C~~C~~~I~~~~-~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~ 165 (195)
++|.+|+++|.+.+ .|.+.++.||..||+|..|+++|.++.|+.+||++||+.||.++|+++|+.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~~ 72 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSSG 72 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCCC
Confidence 89999999999764 6789999999999999999999999899999999999999999999999743
No 31
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.7e-17 Score=107.60 Aligned_cols=62 Identities=24% Similarity=0.600 Sum_probs=58.3
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
...++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 45689999999998 678999999999999999999999998899999999999999999998
No 32
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.5e-17 Score=109.87 Aligned_cols=66 Identities=35% Similarity=0.729 Sum_probs=61.8
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccH-HHHHhhhcCCCccC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCK-SHFAQLFKEKGCYN 165 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~-~c~~~~f~~k~~~~ 165 (195)
++|.+|+++|.+++.|.+.++.||..||+|..|+++|.++.|+.+||.+||+ .||.++|+++|.-+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C 67 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCc
Confidence 4799999999988889999999999999999999999988999999999999 79999999999833
No 33
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.70 E-value=1e-17 Score=107.67 Aligned_cols=61 Identities=23% Similarity=0.519 Sum_probs=58.5
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEK 161 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k 161 (195)
++|++|+++|. ++.|.+.++.||+.||+|..|+++|.++.|+.+||++||+.||.++||+|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 89999999999 77889999999999999999999999889999999999999999999986
No 34
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.6e-17 Score=106.95 Aligned_cols=63 Identities=27% Similarity=0.595 Sum_probs=58.5
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
...++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 65 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcc
Confidence 35689999999998 6789999999999999999999999988999999999999999999983
No 35
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.9e-17 Score=109.53 Aligned_cols=67 Identities=31% Similarity=0.667 Sum_probs=61.5
Q ss_pred CCcCCCCCccccccccccc-CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 1 MAFCGTQEKCKACDKTVHI-IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~-~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
|+.....++|.+|+++|.. +.++.++|+.||++||+|..|+++|.++.|+.++|++||+.||.++|+
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC
T ss_pred hccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh
Confidence 5667778999999999985 456789999999999999999999998899999999999999999998
No 36
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=1.7e-17 Score=106.61 Aligned_cols=62 Identities=27% Similarity=0.621 Sum_probs=58.3
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
..++|.+|+++|. +++|.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 3579999999999 8899999999999999999999999988999999999999999999873
No 37
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=5.1e-17 Score=105.62 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=60.5
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
+.++|..|+++|. ++.|.+.++.||++||+|..|+++|....|+.+||++||+.||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 4589999999998 6788999999999999999999999988899999999999999999998864
No 38
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7.3e-17 Score=109.81 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=61.1
Q ss_pred CCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc
Q 041875 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 97 ~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
....+|.+|+++|. .+.|.+.++.||.+||+|..|+++|..+.|+.+||++||+.||.++|++||.
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 35589999999999 4778999999999999999999999988899999999999999999999984
No 39
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=4.2e-17 Score=111.47 Aligned_cols=71 Identities=42% Similarity=0.954 Sum_probs=63.6
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCC
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKL 76 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~ 76 (195)
+.++|..|+++|.+.+.|.++++.||++||+|..|+++|....|+.+++++||+.||.++|++++++...|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~ 84 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 84 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCc
Confidence 46799999999997789999999999999999999999998889999999999999999999666544433
No 40
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3e-17 Score=109.33 Aligned_cols=65 Identities=17% Similarity=0.375 Sum_probs=60.5
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
..++|.+|+++|. ++.|.+.++.||..||+|..|+++|....|+.+||++||+.||.++|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4589999999999 4688999999999999999999999987899999999999999999999974
No 41
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.4e-17 Score=110.13 Aligned_cols=67 Identities=13% Similarity=0.397 Sum_probs=62.0
Q ss_pred CcCccCCceeec---CceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccCC
Q 041875 100 DKCTSCKKTVYP---LEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYNH 166 (195)
Q Consensus 100 ~~C~~C~~~I~~---~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~~ 166 (195)
++|..|+++|.+ .+.|.+.++.||++||+|..|+++|.+..|+.+||+|||+.||.++|+++|.-++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 899999999994 3678999999999999999999999988899999999999999999999997544
No 42
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.9e-17 Score=105.70 Aligned_cols=64 Identities=22% Similarity=0.459 Sum_probs=59.5
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
++.++|..|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 56789999999998 78899999999999999999999999989999999999999999999843
No 43
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.8e-17 Score=109.51 Aligned_cols=61 Identities=21% Similarity=0.507 Sum_probs=57.3
Q ss_pred CCccccccccccc---CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 7 QEKCKACDKTVHI---IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 7 ~~~C~~C~~~I~~---~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
.++|.+|+++|.+ .++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 5799999999983 378999999999999999999999998899999999999999999988
No 44
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.3e-17 Score=107.13 Aligned_cols=64 Identities=14% Similarity=0.388 Sum_probs=59.2
Q ss_pred CCcCccCCceeec---CceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCC
Q 041875 99 QDKCTSCKKTVYP---LEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKG 162 (195)
Q Consensus 99 ~~~C~~C~~~I~~---~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~ 162 (195)
.++|.+|+++|.. .+.|.+.++.||++||+|..|+++|.+..|+.+||++||+.||.++|||++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 4899999999995 367889999999999999999999998889999999999999999999975
No 45
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=5.3e-17 Score=106.03 Aligned_cols=63 Identities=32% Similarity=0.645 Sum_probs=58.6
Q ss_pred CCCcccccccccccC-ceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 6 TQEKCKACDKTVHII-DMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
..++|..|+++|.++ ++|.++++.||++||+|..|+++|....|+.+++++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccC
Confidence 357999999999974 789999999999999999999999998999999999999999999983
No 46
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.7e-17 Score=110.59 Aligned_cols=64 Identities=27% Similarity=0.635 Sum_probs=59.3
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
...++|..|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~ 86 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASG 86 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCC
Confidence 35679999999996 88999999999999999999999999889999999999999999999844
No 47
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.7e-17 Score=115.01 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=60.8
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCccccc--CCeeccCCccccHHHHHhhhcCCCc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTT--SSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
+.++|++|+++|...+.|.+.++.||+.||+|..|+++|.. ..|+.+||+|||+.||.++|+++|.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~ 69 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGH 69 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCS
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccC
Confidence 35899999999996667899999999999999999999984 5799999999999999999999986
No 48
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.6e-17 Score=107.28 Aligned_cols=65 Identities=29% Similarity=0.599 Sum_probs=58.8
Q ss_pred CCcCccCCceeecCce-EEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc
Q 041875 99 QDKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC 163 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~ 163 (195)
.++|.+|+++|.+.+. +.+.|+.||..||+|..|+++|.++.|+.+||.+||+.||.++|+++|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4899999999986554 6899999999999999999999988899999999999999999999985
No 49
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.9e-17 Score=105.49 Aligned_cols=63 Identities=24% Similarity=0.579 Sum_probs=58.4
Q ss_pred CCCcccccccccccC-ceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 6 TQEKCKACDKTVHII-DMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
..++|..|+++|.+. .+|.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSS
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCC
Confidence 357999999999975 589999999999999999999999999999999999999999999983
No 50
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.5e-17 Score=106.45 Aligned_cols=64 Identities=17% Similarity=0.427 Sum_probs=58.6
Q ss_pred CCCCccccccccccc---CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 5 GTQEKCKACDKTVHI---IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~---~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
...++|.+|+++|.+ .++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 456899999999984 3789999999999999999999999988999999999999999998873
No 51
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=2.8e-17 Score=109.47 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=59.4
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETG 70 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~ 70 (195)
...++|..|+++|. +++|.++++.||++||+|..|++.|.+..|+.+++++||+.||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 45679999999998 578999999999999999999999988789999999999999999998553
No 52
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=9.3e-17 Score=109.30 Aligned_cols=64 Identities=27% Similarity=0.485 Sum_probs=58.9
Q ss_pred CCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
....+|..|+++|. +++|.++++.||++||+|..|++.|....|+.+++++||+.||.++|+++
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~ 86 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGP 86 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCC
Confidence 34578999999998 58899999999999999999999999889999999999999999999854
No 53
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.4e-16 Score=104.02 Aligned_cols=63 Identities=25% Similarity=0.463 Sum_probs=58.1
Q ss_pred CCCCcccccccccccC-ceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 5 GTQEKCKACDKTVHII-DMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
...++|.+|+++|... .+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4568999999999864 58999999999999999999999988889999999999999999986
No 54
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.65 E-value=6.4e-17 Score=112.47 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=64.6
Q ss_pred CCcCccCCceeec-CceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCc-cCCCCCc
Q 041875 99 QDKCTSCKKTVYP-LEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGC-YNHLTKT 170 (195)
Q Consensus 99 ~~~C~~C~~~I~~-~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~-~~~~~~~ 170 (195)
.++|.+|+++|.+ ++.|.+.++.||..||+|..|+++|.+..|+.+||++||+.||.++|+++|. ++..+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc
Confidence 4899999999985 6778999999999999999999999988899999999999999999999999 4444443
No 55
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.5e-16 Score=104.88 Aligned_cols=61 Identities=25% Similarity=0.630 Sum_probs=57.5
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.++.|+.+++++||+.||.++|+
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcC
Confidence 3579999999998 588999999999999999999999998899999999999999999998
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.6e-16 Score=105.14 Aligned_cols=63 Identities=29% Similarity=0.556 Sum_probs=57.7
Q ss_pred CCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeec-CCeecchhhHHHhhc
Q 041875 4 CGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSM-EGVLYCKPHFEQLFK 67 (195)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~c~~~~~~ 67 (195)
....++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.. ++++||+.||.++|+
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 12 VATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred hcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhc
Confidence 346789999999998 679999999999999999999999998888876 789999999999998
No 57
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=115.47 Aligned_cols=71 Identities=15% Similarity=0.341 Sum_probs=64.9
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccC-CCCCc
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYN-HLTKT 170 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~-~~~~~ 170 (195)
++|.+|+++|..++.+.++|+.||+.||+|..|+++|.+..|+.+||++||+.||.++|+++|.-+ ..+.+
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 899999999997778899999999999999999999998889999999999999999999999844 44443
No 58
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.5e-16 Score=105.93 Aligned_cols=64 Identities=20% Similarity=0.432 Sum_probs=58.7
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
.++|..|+++|. ++.|.+.++.||+.||+|..|+++|.+.. +.+||++||+.||.++|+|+.+.
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ss 78 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPSS 78 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSCC
T ss_pred CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCCC
Confidence 489999999999 77789999999999999999999999875 48899999999999999998764
No 59
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.5e-16 Score=104.65 Aligned_cols=64 Identities=33% Similarity=0.601 Sum_probs=59.0
Q ss_pred CCcccccccccccCc-eEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCC
Q 041875 7 QEKCKACDKTVHIID-MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETG 70 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~-~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~ 70 (195)
.++|.+|+++|..++ +|.++++.||++||+|..|+++|..+.|+.+++++||+.||.++|++++
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCC
Confidence 579999999998754 6899999999999999999999999999999999999999999998654
No 60
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1e-16 Score=107.53 Aligned_cols=64 Identities=25% Similarity=0.717 Sum_probs=58.2
Q ss_pred CCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCcee--ecCCeecchhhHHHhhc
Q 041875 4 CGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFS--SMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~--~~~g~~yC~~c~~~~~~ 67 (195)
.++.++|.+|+++|+.++.|.++++.||++||+|..|++.|....|+ .+++++||+.||.++++
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 45678999999999888899999999999999999999999999888 47999999999988775
No 61
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=5.2e-16 Score=103.34 Aligned_cols=63 Identities=29% Similarity=0.585 Sum_probs=58.2
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccC
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASG 76 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCS
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCC
Confidence 4589999999998 57899999999999999999999999889999999999999999999843
No 62
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.8e-16 Score=106.27 Aligned_cols=64 Identities=36% Similarity=0.749 Sum_probs=58.3
Q ss_pred CCCCcCccCCceeecCceEEECCceecccccccccCCcccccCCee--ccCCccccHHHHHhhhcC
Q 041875 97 GTQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYA--ALDGILYCKSHFAQLFKE 160 (195)
Q Consensus 97 ~~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~--~~dg~~yC~~c~~~~f~~ 160 (195)
++.++|.+|+++|...+.|.+.++.||..||+|..|+++|....|. .+||++||+.||.++|+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 4558999999999988889999999999999999999999988887 479999999999998875
No 63
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=3.3e-16 Score=102.70 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=56.3
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCC-CCceeecCCeecchhhHHHhhc
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLV-MGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
..++|.+|+++|. +++|.++++.||++||+|..|+++|. +..|+.+++++||..||.+++.
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4589999999998 68899999999999999999999998 6689999999999999998875
No 64
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=105.44 Aligned_cols=62 Identities=19% Similarity=0.530 Sum_probs=57.5
Q ss_pred CCCccccccccccc-CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 6 TQEKCKACDKTVHI-IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 6 ~~~~C~~C~~~I~~-~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
..++|.+|+++|.. +.+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~ 76 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGG
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcC
Confidence 35799999999984 567899999999999999999999998899999999999999999998
No 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.61 E-value=4.6e-16 Score=101.30 Aligned_cols=60 Identities=32% Similarity=0.695 Sum_probs=56.3
Q ss_pred CcCccCCceeecCce-EEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhc
Q 041875 100 DKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFK 159 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~ 159 (195)
++|.+|+++|.+.+. +.+.++.||+.||+|..|+++|..+.|+.+||++||+.||.++||
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 799999999998776 479999999999999999999998889999999999999999986
No 66
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.8e-16 Score=103.50 Aligned_cols=63 Identities=21% Similarity=0.475 Sum_probs=57.0
Q ss_pred CCCCCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhcc
Q 041875 4 CGTQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKE 68 (195)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~ 68 (195)
....++|..|+++|. ++.|.++|+.||++||+|..|+++|.+.. +.+++++||+.||.++|++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCC
Confidence 345689999999999 78899999999999999999999999775 5899999999999999874
No 67
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.6e-16 Score=112.48 Aligned_cols=73 Identities=19% Similarity=0.449 Sum_probs=63.9
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccc--cCCeeccCCccccHHHHHhhhcC--CCc-cCCCCCcc
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLT--TSSYAALDGILYCKSHFAQLFKE--KGC-YNHLTKTA 171 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~c~~~~f~~--k~~-~~~~~~~~ 171 (195)
.++|++|+++|...+.|.+.++.||+.||+|..|+++|. +..|+.+||++||+.||.++|++ +|. ++..|.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 389999999999776789999999999999999999997 45799999999999999999999 888 44445443
No 68
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.1e-16 Score=100.63 Aligned_cols=62 Identities=23% Similarity=0.476 Sum_probs=57.1
Q ss_pred CCcCccCCceeecC-ceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcC
Q 041875 99 QDKCTSCKKTVYPL-EKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKE 160 (195)
Q Consensus 99 ~~~C~~C~~~I~~~-~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~ 160 (195)
.++|.+|+++|.+. ..|.+.++.||..||+|..|+++|.+..|+.+||++||+.||.++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 38999999999974 468999999999999999999999888899999999999999999964
No 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.61 E-value=4.6e-16 Score=101.30 Aligned_cols=63 Identities=30% Similarity=0.734 Sum_probs=57.1
Q ss_pred CCCCcccccccccccCc-eEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 5 GTQEKCKACDKTVHIID-MVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~-~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
...++|.+|+++|..++ ++.++|+.||++||+|..|+++|..+.|+.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 35679999999999766 4689999999999999999999998899999999999999998874
No 70
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.61 E-value=4.9e-16 Score=120.13 Aligned_cols=61 Identities=30% Similarity=0.737 Sum_probs=58.0
Q ss_pred CCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 7 QEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC
T ss_pred CCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC
Confidence 5679999999997888999999999999999999999998899999999999999999998
No 71
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.60 E-value=3.7e-16 Score=119.85 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=61.9
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccCCCCC
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYNHLTK 169 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~~~~~ 169 (195)
.++|.+|+++|...+.+.+.++.||+.||+|..|+++|.+..| .+||++||+.||.++|+++|..+...+
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I 129 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGI 129 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCC
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCcc
Confidence 4899999999996666789999999999999999999998765 789999999999999999999444433
No 72
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-16 Score=111.68 Aligned_cols=61 Identities=23% Similarity=0.530 Sum_probs=55.9
Q ss_pred CCcccccccccccCceEeeCCcccccCccccccccccCC--CCceeecCCeecchhhHHHhhc
Q 041875 7 QEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLV--MGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
.++|.+|+++|...++|.++++.||++||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 479999999999666899999999999999999999997 3589999999999999999874
No 73
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=109.68 Aligned_cols=62 Identities=19% Similarity=0.490 Sum_probs=56.6
Q ss_pred CCCcCccCCceeecCceEEECCceecccccccccCCcccc--cCCeeccCCccccHHHHHhhhc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLT--TSSYAALDGILYCKSHFAQLFK 159 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~c~~~~f~ 159 (195)
..++|.+|+++|.....|.+.++.||..||+|..|+++|. +..|+.+||++||+.||.++||
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3589999999999666789999999999999999999997 3579999999999999999997
No 74
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=7.7e-16 Score=100.95 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=57.1
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccc-cCCeeccCCccccHHHHHhhhcCCC
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLT-TSSYAALDGILYCKSHFAQLFKEKG 162 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~c~~~~f~~k~ 162 (195)
.++|++|+++|. ++.|.+.++.||++||+|..|+++|. +..|+.++|++||..||.++++++-
T Consensus 5 ~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 5 SSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred cCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 389999999998 47789999999999999999999998 6789999999999999999887653
No 75
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=97.58 Aligned_cols=59 Identities=27% Similarity=0.680 Sum_probs=54.3
Q ss_pred CCccccccccccc-CceEeeCCcccc--cCccccccccccCCCCceeecCCeecc-hhhHHHh
Q 041875 7 QEKCKACDKTVHI-IDMVTADGISYH--KICFKCSHCNGKLVMGNFSSMEGVLYC-KPHFEQL 65 (195)
Q Consensus 7 ~~~C~~C~~~I~~-~~~i~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~c~~~~ 65 (195)
.++|.+|+++|.. ++.|.++|+.|| ++||+|..|+++|.+..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999997 478999999999 999999999999998899999999999 8998754
No 76
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=99.37 Aligned_cols=59 Identities=25% Similarity=0.628 Sum_probs=54.3
Q ss_pred CCCccccccccccc----CceEeeCCcccccCccccccccccCCCCceeecCCeecchhhHHH
Q 041875 6 TQEKCKACDKTVHI----IDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64 (195)
Q Consensus 6 ~~~~C~~C~~~I~~----~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~ 64 (195)
..++|.+|+++|.+ .++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 35899999999993 378999999999999999999999998899999999999999975
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.56 E-value=4.8e-16 Score=112.00 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=61.5
Q ss_pred CcCccCCceeecCce-EEECCceecccccccccCCcccc-cCCeeccCCccccHHHHHhhhcCCCccCCCCC
Q 041875 100 DKCTSCKKTVYPLEK-VTVEGESFHKTCFRCSHGGCLLT-TSSYAALDGILYCKSHFAQLFKEKGCYNHLTK 169 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~-v~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~c~~~~f~~k~~~~~~~~ 169 (195)
.+|..|+++|.+.+. |.+.++.||..||+|..|+++|. +..|+..+|++||..||.++|+++|.++....
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 489999999997554 58999999999999999999995 55699999999999999999999998666443
No 78
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=95.23 Aligned_cols=58 Identities=24% Similarity=0.599 Sum_probs=53.9
Q ss_pred CcCccCCceeecC-ceEEECCceec--ccccccccCCcccccCCeeccCCcccc-HHHHHhh
Q 041875 100 DKCTSCKKTVYPL-EKVTVEGESFH--KTCFRCSHGGCLLTTSSYAALDGILYC-KSHFAQL 157 (195)
Q Consensus 100 ~~C~~C~~~I~~~-~~v~~~~~~~H--~~CF~C~~C~~~L~~~~~~~~dg~~yC-~~c~~~~ 157 (195)
++|++|+++|.++ +.|.+.++.|| ++||+|..|+++|.+..|+.+||+||| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 7899999999974 67899999999 999999999999999899999999999 8999764
No 79
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.53 E-value=7.5e-15 Score=106.57 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=60.9
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccc--cCCeeccCCccccHHHHHhhhcC--CCccCCC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLT--TSSYAALDGILYCKSHFAQLFKE--KGCYNHL 167 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~c~~~~f~~--k~~~~~~ 167 (195)
++|.+|+++|...+.|.++++.||+.||+|..|+++|. +..|+.+||+|||+.||.++|++ +|..+..
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~ 74 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK 74 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCC
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCC
Confidence 79999999999665789999999999999999999997 35799999999999999999999 8874443
No 80
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.2e-15 Score=97.50 Aligned_cols=61 Identities=21% Similarity=0.511 Sum_probs=55.4
Q ss_pred CCCcccccccccccCceEeeCCcccccCccccccccccCCC-Ccee-ecCCeecchhhHHHhhc
Q 041875 6 TQEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVM-GNFS-SMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~-~~~~-~~~g~~yC~~c~~~~~~ 67 (195)
..++|.+|+++|. +++|.++++.||++||+|..|+++|.. ..|. ++++++||+.||.++|+
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 4579999999999 888999999999999999999999975 5676 58999999999999997
No 81
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.52 E-value=8.8e-15 Score=105.33 Aligned_cols=62 Identities=21% Similarity=0.499 Sum_probs=55.5
Q ss_pred CcccccccccccC-ceEeeCCcccccCccccccccccCC-CCceeecCCeecchhhHHHhhccC
Q 041875 8 EKCKACDKTVHII-DMVTADGISYHKICFKCSHCNGKLV-MGNFSSMEGVLYCKPHFEQLFKET 69 (195)
Q Consensus 8 ~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~c~~~~~~~~ 69 (195)
++|..|+++|... .++.++++.||+.||+|..|++.|. +..|+.+++++||..||.++++++
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~ 72 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKIN 72 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHH
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccc
Confidence 4899999999874 4679999999999999999999995 457999999999999999999844
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.52 E-value=1.2e-14 Score=110.12 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=61.4
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCccCCCCC
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCYNHLTK 169 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~~~~~~ 169 (195)
.++|.+|+++|...+.|.++|+.||..||+|..|+++|.+..| .+||++||+.||.++|+++|..+...+
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I 75 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGI 75 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBC
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccccccccccccc
Confidence 3799999999997667889999999999999999999998764 789999999999999999998444433
No 83
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.46 E-value=2.9e-14 Score=109.80 Aligned_cols=68 Identities=18% Similarity=0.417 Sum_probs=61.1
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCccccc--CCeeccCCccccHHHHHhhhcC--CCccCCC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTT--SSYAALDGILYCKSHFAQLFKE--KGCYNHL 167 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~dg~~yC~~c~~~~f~~--k~~~~~~ 167 (195)
++|..|+++|...+.|.++++.||+.||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~ 77 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ 77 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCC
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCC
Confidence 799999999996656899999999999999999999985 5799999999999999999999 6874443
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=5e-14 Score=93.94 Aligned_cols=60 Identities=25% Similarity=0.526 Sum_probs=52.4
Q ss_pred CCcccccccccccCceEeeCCcccccCccccccccccCCCCceeecCC-eecchhhHHHhhc
Q 041875 7 QEKCKACDKTVHIIDMVTADGISYHKICFKCSHCNGKLVMGNFSSMEG-VLYCKPHFEQLFK 67 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~c~~~~~~ 67 (195)
.++|..|+++|. +++|.++++.||++||+|..|+++|..+.++..++ .+||..||.+++.
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 469999999998 78999999999999999999999998776665555 5799999987765
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.37 E-value=9.4e-08 Score=51.59 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=27.3
Q ss_pred CCcccccccccccCceEeeCCcccccCcc
Q 041875 7 QEKCKACDKTVHIIDMVTADGISYHKICF 35 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF 35 (195)
.+.|..|++.|+..|.+.++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.33 E-value=1e-07 Score=51.44 Aligned_cols=28 Identities=46% Similarity=0.961 Sum_probs=27.0
Q ss_pred CcCccCCceeecCceEEECCceeccccc
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCF 127 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF 127 (195)
++|++|++.|++.|.+.+.|+.||+.||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 7999999999999999999999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.62 E-value=0.39 Score=33.22 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=28.2
Q ss_pred CCCCcccccccccccC----c--eEeeCCcccccCcc--------ccccccccCCCCc
Q 041875 5 GTQEKCKACDKTVHII----D--MVTADGISYHKICF--------KCSHCNGKLVMGN 48 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~----~--~i~~~g~~~H~~CF--------~C~~C~~~L~~~~ 48 (195)
.....|..|...+... + ++..=|..||..|+ +|-.|++.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3455788887776422 1 44455677777776 6778888776543
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.88 E-value=0.73 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=37.9
Q ss_pred CccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecC
Q 041875 33 ICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPL 112 (195)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~ 112 (195)
+=|.|..|...+.. .....-|..||..|..+.+..+ ...|+.|++++...
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~-----------------------------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAG-----------------------------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTT-----------------------------CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHC-----------------------------cCCCCCCcCCCChh
Confidence 45889999888864 4555789999999998877521 26899999988743
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.41 E-value=0.42 Score=33.02 Aligned_cols=93 Identities=14% Similarity=0.290 Sum_probs=61.5
Q ss_pred ccccccccccCCCC------ceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCc
Q 041875 34 CFKCSHCNGKLVMG------NFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKK 107 (195)
Q Consensus 34 CF~C~~C~~~L~~~------~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~ 107 (195)
=+.|..|...+... .....=|..||..|..+.+..+ ..|+.|.+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------------------------~~CP~Cr~ 56 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------------------------NTCPTCRK 56 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------------------------------SBCTTTCC
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------------------------------CCCCCCCC
Confidence 37888898776432 1444558899999998876522 68999999
Q ss_pred eeecCceEEECCceecccccccccCCcccccC----C--eeccCCccccHHHHHhhhc
Q 041875 108 TVYPLEKVTVEGESFHKTCFRCSHGGCLLTTS----S--YAALDGILYCKSHFAQLFK 159 (195)
Q Consensus 108 ~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~----~--~~~~dg~~yC~~c~~~~f~ 159 (195)
.+...+.... ..-..=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 57 ~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 57 KINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp BCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred cCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 9975444321 1123446788888877531 1 2233589999999876554
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.93 E-value=0.55 Score=29.09 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=36.3
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLE 113 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~ 113 (195)
=+.|..|...+........=|..||..|..+.+... ..|+.|.+.|...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------------------------~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------------------------NRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------------------------SSCTTTCCCCCSSC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------------------------CcCCCcCcccCccc
Confidence 478888888877532223568899999998776421 68999999887543
Q ss_pred e
Q 041875 114 K 114 (195)
Q Consensus 114 ~ 114 (195)
.
T Consensus 65 ~ 65 (72)
T 2djb_A 65 P 65 (72)
T ss_dssp S
T ss_pred c
Confidence 3
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.71 E-value=1.7 Score=29.43 Aligned_cols=95 Identities=17% Similarity=0.377 Sum_probs=55.1
Q ss_pred CCCcccccccccccCceEe--eCCcccccCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCC
Q 041875 6 TQEKCKACDKTVHIIDMVT--ADGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNG 83 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
....|..|+..-...+.|. .=++.||..|+.=.. .. +..+..+|..|
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~~----~~~~~W~C~~C---------------------- 54 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----TP----LKRAGWQCPEC---------------------- 54 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----CT----TTSTTCCCTTT----------------------
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----cc----ccccCccCCcC----------------------
Confidence 4467899977632122233 335788988875321 10 13456667665
Q ss_pred CCCCCCCCccccCCCCCcCccCCceeecCceEE--ECCceecccccccccCCcccccCCeeccCCccccHHHHHh
Q 041875 84 LTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVT--VEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156 (195)
Q Consensus 84 ~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~ 156 (195)
..|..|++.-....++. .=++.||..|+.- +|.. .-.|.-||..|...
T Consensus 55 ----------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 55 ----------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp ----------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCHHHHCC
T ss_pred ----------------CcccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc----CCCCCcCCcCCcCc
Confidence 35788887655334443 3467899988753 2321 12367789888654
No 92
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.66 E-value=0.35 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.2
Q ss_pred cCCCCCcccccccccccCceEeeCCcccccCcc
Q 041875 3 FCGTQEKCKACDKTVHIIDMVTADGISYHKICF 35 (195)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF 35 (195)
|......|..|...|..+.....=+..||..|+
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 566778999999999866544444556777776
No 93
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=83.12 E-value=1.9 Score=28.75 Aligned_cols=51 Identities=6% Similarity=-0.065 Sum_probs=39.6
Q ss_pred cCccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec
Q 041875 32 KICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP 111 (195)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~ 111 (195)
++-|.|..|...+.+ ......|..||..|..+.+.. ...|+.|++++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~------------------------------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLN------------------------------SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTS------------------------------CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHc------------------------------CCCCCCCCCCCCh
Confidence 667999999988875 555668999999999877641 1689999998874
Q ss_pred Cc
Q 041875 112 LE 113 (195)
Q Consensus 112 ~~ 113 (195)
.+
T Consensus 76 ~~ 77 (100)
T 2kre_A 76 SM 77 (100)
T ss_dssp TS
T ss_pred hh
Confidence 43
No 94
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=82.33 E-value=1.3 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=24.7
Q ss_pred ccccccccccCCCCceee-cCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHH
Confidence 4788899888765 3333 5688999999988765
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=82.02 E-value=0.86 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=23.1
Q ss_pred ccccCCcccccCCeeccCCcccc-HHHHHh
Q 041875 128 RCSHGGCLLTTSSYAALDGILYC-KSHFAQ 156 (195)
Q Consensus 128 ~C~~C~~~L~~~~~~~~dg~~yC-~~c~~~ 156 (195)
.|..|+..++...-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46778888887778888999998 777654
No 96
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=81.62 E-value=1.6 Score=28.08 Aligned_cols=35 Identities=6% Similarity=-0.056 Sum_probs=28.0
Q ss_pred cCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 32 KICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
++=|.|..|...+.+ ......|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 456999999988875 55556899999999887764
No 97
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.58 E-value=1.3 Score=26.68 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=34.9
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecC
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPL 112 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~ 112 (195)
=+.|..|...+... ....=|..||..|..+.+.. ....|+.|.+.|...
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-----------------------------~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSS-----------------------------SSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTT-----------------------------SSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHh-----------------------------CcCCCCCCCcCCChh
Confidence 37788888877643 23456888999999887631 116899999988743
No 98
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=80.74 E-value=2.2 Score=28.29 Aligned_cols=35 Identities=6% Similarity=-0.166 Sum_probs=27.9
Q ss_pred cCccccccccccCCCCceeecCC-eecchhhHHHhhc
Q 041875 32 KICFKCSHCNGKLVMGNFSSMEG-VLYCKPHFEQLFK 67 (195)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~c~~~~~~ 67 (195)
++=|.|..|...+.+ ......| ..||..|..+.+.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHH
Confidence 567999999988875 5555677 9999999988764
No 99
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.39 E-value=2.2 Score=25.72 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=18.7
Q ss_pred ccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 36 KCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
.|..|...+........=|..||..|..+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 45566555544333334467788888876553
No 100
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.92 E-value=0.89 Score=27.03 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=32.9
Q ss_pred cccccccccCCCC-----c-eeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCce
Q 041875 35 FKCSHCNGKLVMG-----N-FSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKT 108 (195)
Q Consensus 35 F~C~~C~~~L~~~-----~-~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~ 108 (195)
+.|..|...+... . ....=|..||..|..+.+... ..|+.|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------------------------~~CP~Cr~~ 53 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------------------------NTCPTCRKK 53 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------------------------SBCTTTCCB
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------------------------CCCCCCCcc
Confidence 4566666655321 1 334457889999998776421 689999998
Q ss_pred eecCce
Q 041875 109 VYPLEK 114 (195)
Q Consensus 109 I~~~~~ 114 (195)
+...+.
T Consensus 54 ~~~~~~ 59 (64)
T 2xeu_A 54 INHKRY 59 (64)
T ss_dssp CTTTCE
T ss_pred CCccce
Confidence 875443
No 101
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.42 E-value=2.2 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=23.9
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 678888887754 44455688999999987764
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=78.17 E-value=4.6 Score=27.44 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=24.3
Q ss_pred CcccccccccccCceEeeC----CcccccCccccccccccCCCCceeecCCeecchhh
Q 041875 8 EKCKACDKTVHIIDMVTAD----GISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPH 61 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~----g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (195)
..|..|+. .+++|.-+ .+.||..|+. |.. +-.|+-||..|
T Consensus 16 ~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 16 DYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp SSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 46888873 35666554 2578888874 332 12567778765
No 103
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.13 E-value=2.4 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=34.2
Q ss_pred cccccccc-cCCCCc---eeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceee
Q 041875 35 FKCSHCNG-KLVMGN---FSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVY 110 (195)
Q Consensus 35 F~C~~C~~-~L~~~~---~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~ 110 (195)
+.|..|.. .+.+.. ....=|..||..|..+.+..+ ...|+.|++++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------------------------AGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------------------------SSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-----------------------------CCcCCCCCCccc
Confidence 56777777 443332 233458889999998875411 157999999987
Q ss_pred cCceE
Q 041875 111 PLEKV 115 (195)
Q Consensus 111 ~~~~v 115 (195)
..+..
T Consensus 55 ~~~~~ 59 (65)
T 1g25_A 55 KSNFR 59 (65)
T ss_dssp SCCCE
T ss_pred cccce
Confidence 54443
No 104
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=78.04 E-value=1.4 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=24.0
Q ss_pred ccccccccCCCCceeecCCeecc-hhhHHHh
Q 041875 36 KCSHCNGKLVMGNFSSMEGVLYC-KPHFEQL 65 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC-~~c~~~~ 65 (195)
.|..|+..+....-+.++|+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 46788888887777889999999 7787644
No 105
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.97 E-value=2.9 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=23.5
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
-+.|..|...+... ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp CCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTT
T ss_pred CCCCccCCcccCCC-EEccCCCHHHHHHHHHHHH
Confidence 46788888777543 3345688899999987654
No 106
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=77.74 E-value=2 Score=28.38 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=35.4
Q ss_pred cccccccccCCCCcee-ecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCc
Q 041875 35 FKCSHCNGKLVMGNFS-SMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLE 113 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~-~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~ 113 (195)
+.|..|...+.. ... ..=|..||..|..+.+... ...|+.|..++...+
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQ-----------------------------RAQCPHCRAPLQLRE 72 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHT-----------------------------CSBCTTTCCBCCGGG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHC-----------------------------cCCCCCCCCcCCHHH
Confidence 678888888864 333 4458899999998876521 047999999887544
Q ss_pred e
Q 041875 114 K 114 (195)
Q Consensus 114 ~ 114 (195)
.
T Consensus 73 l 73 (100)
T 3lrq_A 73 L 73 (100)
T ss_dssp C
T ss_pred h
Confidence 3
No 107
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=77.72 E-value=2.1 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=25.2
Q ss_pred ccccccccccCCCCceee-cCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 4778899888764 4444 6689999999988765
No 108
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.21 E-value=2.1 Score=26.12 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHH
Confidence 3788889888774 33445688999999988763
No 109
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=77.04 E-value=2.7 Score=29.51 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=23.7
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHH
Confidence 678889887764 34445688999999887654
No 110
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=76.11 E-value=2.7 Score=30.39 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=36.6
Q ss_pred CccccccccccCCCCceee-cCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec
Q 041875 33 ICFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP 111 (195)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~ 111 (195)
.=+.|..|...+.. .... .=|..||..|..+.+..+ ...|+.|..+|..
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECLHRFCADCIITALRSG-----------------------------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTT-----------------------------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhC-----------------------------cCCCCCCCCcCCC
Confidence 34789999888875 3333 568899999998877521 1679999998864
Q ss_pred C
Q 041875 112 L 112 (195)
Q Consensus 112 ~ 112 (195)
.
T Consensus 103 ~ 103 (165)
T 2ckl_B 103 K 103 (165)
T ss_dssp G
T ss_pred c
Confidence 3
No 111
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.88 E-value=3.5 Score=25.74 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=36.3
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecC
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPL 112 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~ 112 (195)
=+.|..|...+... ....=|..||..|..+.+.... ..+....|+.|...+...
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~------------------------~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VSADCNHSFCRACITLNYESNR------------------------NTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSB------------------------CTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhcc------------------------CCCCCCCCCCCCCcCCHH
Confidence 37888998887653 3445688999999987765210 001126899999988743
No 112
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=74.65 E-value=1.1 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=21.6
Q ss_pred cccccCCcccccCCeeccCCccccHHHHHh
Q 041875 127 FRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156 (195)
Q Consensus 127 F~C~~C~~~L~~~~~~~~dg~~yC~~c~~~ 156 (195)
..|..|+-......-...||+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 357777776665556667888889888865
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.29 E-value=1.1 Score=30.72 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=29.5
Q ss_pred CcCccCCceeecCceEE--ECCceecccccccccCCcccccCCeeccCCccccHHHHHh
Q 041875 100 DKCTSCKKTVYPLEKVT--VEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~ 156 (195)
..|..|++.-..+++|. .=+..||..|+.= +|.. .-.|.-||..|...
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP-----PVAE----PPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS-----CCSS----CCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCC-----CccC----CCCCCeECccccch
Confidence 36888887654444553 3357899988652 2322 22467789888543
No 114
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=73.88 E-value=2.6 Score=28.33 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=38.4
Q ss_pred cccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCceEE
Q 041875 37 CSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLEKVT 116 (195)
Q Consensus 37 C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~~v~ 116 (195)
|+.|+.++..-.=.+-=+..+|-+|+......+ ...|+.|..+|...|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-----------------------------~k~Cp~C~~~V~rVe~~- 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-----------------------------DKMCPGCSDPVQRIEQC- 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-----------------------------CCBCTTTCCBCSEEEEE-
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhcc-----------------------------CCCCcCcCCeeeeeEEe-
Confidence 667777765321122235688999997643211 16899999999855553
Q ss_pred ECCceecccccccc---cCCccc
Q 041875 117 VEGESFHKTCFRCS---HGGCLL 136 (195)
Q Consensus 117 ~~~~~~H~~CF~C~---~C~~~L 136 (195)
.+|.. |-|. .|.+..
T Consensus 54 ~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 54 TRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp EGGGC-----CCCCCCCCCCCCC
T ss_pred ccCCE-----EECCCCCCHHHHh
Confidence 33444 4454 465543
No 115
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=73.80 E-value=3.7 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=17.9
Q ss_pred cccccccccCCCC---ceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMG---NFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~---~~~~~~g~~yC~~c~~~~~~ 67 (195)
..|..|...+... .....=+..||..|..+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH
Confidence 3455565555321 12223366778888776654
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=73.52 E-value=3.3 Score=32.19 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=29.0
Q ss_pred ccCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 31 HKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 31 H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
-+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 3567999999998874 55566899999999987764
No 117
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=73.35 E-value=2.8 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=25.9
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
=|.|..|...+.. .....-|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHH
Confidence 3789999888875 44556789999999988764
No 118
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.95 E-value=2.5 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=23.4
Q ss_pred ccccccccccCCCCceee-cCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc
Confidence 4778888877764 3333 5688899999877654
No 119
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=72.57 E-value=3.3 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=36.2
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLE 113 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~ 113 (195)
=|.|..|...+.. .....=|..||..|..+.+.... ..|+.|..+|...+
T Consensus 18 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~-----------------------------~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAG-----------------------------HKCPVDNEILLENQ 67 (118)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHC-----------------------------SBCTTTCCBCCGGG
T ss_pred CCCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCC-----------------------------CCCCCCCCCcCHHh
Confidence 3788999888864 34455688999999987664210 38999999887543
No 120
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=72.01 E-value=1 Score=34.25 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=26.6
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHH
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~ 64 (195)
=.+|+.|+.......-...+|+.+|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4679999999887777788999999999964
No 121
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=71.83 E-value=3 Score=25.73 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=24.8
Q ss_pred ccccccccccCCCCceeec-CCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSM-EGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~-~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. ..... =|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 3788899887764 44444 389999999988775
No 122
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.57 E-value=3.5 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.8
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+... ....=|..||..|....+.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHH
Confidence 7888998887653 3335678899999987664
No 123
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=70.49 E-value=4.2 Score=25.18 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=20.5
Q ss_pred cccccccccCCCCc--eeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGN--FSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~--~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+.... ....=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH
Confidence 56777776665432 2223467788888877654
No 124
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.21 E-value=2.2 Score=24.05 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=15.0
Q ss_pred eeccCCccccHHHHHhhh
Q 041875 141 YAALDGILYCKSHFAQLF 158 (195)
Q Consensus 141 ~~~~dg~~yC~~c~~~~f 158 (195)
|...+-+|||..||.++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 666799999999998754
No 125
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=70.19 E-value=3.9 Score=27.56 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=36.8
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecCc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPLE 113 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~~ 113 (195)
=|.|..|...+.. .....=|..||..|..+.+... ...|+.|..++...+
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLKVM-----------------------------GSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHT-----------------------------CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHC-----------------------------cCcCCCCCCCCCHhh
Confidence 3789999888864 4445678999999998876521 158999999887543
No 126
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=70.07 E-value=1.6 Score=26.54 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=31.3
Q ss_pred cccccccccCCCC-----c-eeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCce
Q 041875 35 FKCSHCNGKLVMG-----N-FSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKT 108 (195)
Q Consensus 35 F~C~~C~~~L~~~-----~-~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~ 108 (195)
+.|..|...+... . ....=|..||..|..+.+... ..|+.|...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------------------------~~CP~Cr~~ 60 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------------------------NTCPTCRKK 60 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------------------------SBCTTTCCB
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------------------------CCCCCCCCc
Confidence 5566666655321 1 333447789999998766422 689999998
Q ss_pred eecC
Q 041875 109 VYPL 112 (195)
Q Consensus 109 I~~~ 112 (195)
+...
T Consensus 61 ~~~~ 64 (71)
T 3ng2_A 61 INHK 64 (71)
T ss_dssp CCCC
T ss_pred cChh
Confidence 8744
No 127
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=70.00 E-value=4.8 Score=29.94 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=29.2
Q ss_pred cCccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 32 KICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 677999999988875 66667899999999988765
No 128
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.32 E-value=1.7 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=22.5
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHH
Confidence 3677888777765 4445578899999876543
No 129
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=69.22 E-value=2.8 Score=25.23 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCceEeeCCcccccCcc--------ccccccccCCC
Q 041875 5 GTQEKCKACDKTVHIIDMVTADGISYHKICF--------KCSHCNGKLVM 46 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF--------~C~~C~~~L~~ 46 (195)
.....|..|...+....++..=|..||..|+ +|-.|+..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3456899999887633344445778999987 38889888864
No 130
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.98 E-value=3.1 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCcccccccccccCceE--eeCCcccccCcc--------ccccccccCC
Q 041875 7 QEKCKACDKTVHIIDMV--TADGISYHKICF--------KCSHCNGKLV 45 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i--~~~g~~~H~~CF--------~C~~C~~~L~ 45 (195)
...|..|...+..++.+ ..=+..||..|+ +|-.|+..+.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 34677777766544332 223556777775 3666666554
No 131
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.59 E-value=1.7 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=21.9
Q ss_pred ccccccccccCCCC-----c-eeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMG-----N-FSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~-----~-~~~~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 35677776665421 1 3344578899999987764
No 132
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.27 E-value=5.8 Score=24.20 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=21.0
Q ss_pred cccccccccCCCCcee--ecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFS--SMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~--~~~g~~yC~~c~~~~~~ 67 (195)
..|..|...+...... ..=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH
Confidence 4567777766543221 23477899999887654
No 133
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=67.95 E-value=5.8 Score=27.05 Aligned_cols=48 Identities=17% Similarity=0.437 Sum_probs=35.2
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP 111 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~ 111 (195)
=+.|..|...+.. .....=|..||..|....+..+ ...|+.|..++..
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQ-----------------------------VFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTT-----------------------------CCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHC-----------------------------cCCCCCCCccCCC
Confidence 3788999888764 3444568899999998776411 1489999998864
No 134
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=67.49 E-value=4.6 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=24.9
Q ss_pred ccccccccccCCCCceeec-CCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSM-EGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~-~g~~yC~~c~~~~~~ 67 (195)
=|.|..|...+.. ..... =|..||..|..+.+.
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHH
Confidence 4789999888864 44445 389999999987764
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.24 E-value=6.4 Score=22.34 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=8.4
Q ss_pred CeecchhhHHHhh
Q 041875 54 GVLYCKPHFEQLF 66 (195)
Q Consensus 54 g~~yC~~c~~~~~ 66 (195)
+..||..|..+.+
T Consensus 28 ~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 28 GHGFHAECVDMWL 40 (55)
T ss_dssp CCEECTTHHHHTT
T ss_pred CCcccHHHHHHHH
Confidence 5567777776544
No 136
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=66.92 E-value=4.9 Score=24.10 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=38.2
Q ss_pred ccccccccccCCCCceee-cCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecC
Q 041875 34 CFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPL 112 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~ 112 (195)
-|.|..+...+.+ .... .+|..|+..+..+.+... .+|+..++++...
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~------------------------------~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDT------------------------------GNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHH------------------------------SBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhC------------------------------CCCcCCcCCCChh
Confidence 3788999888875 5555 799999999998877522 4688888888755
Q ss_pred ceE
Q 041875 113 EKV 115 (195)
Q Consensus 113 ~~v 115 (195)
+.+
T Consensus 52 ~Li 54 (61)
T 2bay_A 52 EIV 54 (61)
T ss_dssp GCE
T ss_pred hcE
Confidence 554
No 137
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=64.61 E-value=7.1 Score=27.88 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=35.9
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeecC
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYPL 112 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~~ 112 (195)
=|.|..|...+.. .....=|..||..|..+.+... ...|+.|...+...
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQ-----------------------------VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTT-----------------------------CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhC-----------------------------CCcCCCCCccCCCC
Confidence 3789999887764 4445668899999998877521 14799999988743
No 138
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=62.92 E-value=6.3 Score=24.88 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=32.1
Q ss_pred cccccccccCCCC--ceee-cCCeecchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceeec
Q 041875 35 FKCSHCNGKLVMG--NFSS-MEGVLYCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVYP 111 (195)
Q Consensus 35 F~C~~C~~~L~~~--~~~~-~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~~ 111 (195)
+.|..|-.++... .+.. .=|..+|..|+.+.... +...|+.|.+++..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------------------------~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------------------------ENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------------------------SCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------------------------CCCCCCCCCCccCC
Confidence 6677887777432 2221 25778999999877531 11689999998874
Q ss_pred C
Q 041875 112 L 112 (195)
Q Consensus 112 ~ 112 (195)
.
T Consensus 63 ~ 63 (78)
T 1e4u_A 63 D 63 (78)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.72 E-value=3.2 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=26.8
Q ss_pred CCCccccccccccc-----------Cc---eEeeCCcccccCcc--------ccccccccCCC
Q 041875 6 TQEKCKACDKTVHI-----------ID---MVTADGISYHKICF--------KCSHCNGKLVM 46 (195)
Q Consensus 6 ~~~~C~~C~~~I~~-----------~~---~i~~~g~~~H~~CF--------~C~~C~~~L~~ 46 (195)
....|+.|...+.. ++ ++..=+..||..|+ +|-.|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 44678888887742 12 22235678998887 48888877753
No 140
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=61.29 E-value=5.2 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=23.0
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
|.|..|...+.. .....=|..||..|..+.+.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVE 47 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHh
Confidence 778888887764 33345578899999876553
No 141
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=60.72 E-value=9.6 Score=22.76 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=19.9
Q ss_pred cccccccccCCCC-ce-eecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMG-NF-SSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~-~~-~~~~g~~yC~~c~~~~~~ 67 (195)
..|..|...+... .. ...=+..||..|..+.+.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 4566676666432 22 233467788899877654
No 142
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.53 E-value=8 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=23.2
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHH
Confidence 5788887777543 2335588899999988775
No 143
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.15 E-value=9.9 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=23.9
Q ss_pred cccccccccCCCC---ceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMG---NFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~---~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+... .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 6788888887653 22334588999999988765
No 144
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.49 E-value=3.9 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=18.7
Q ss_pred cccccccccCCCCceee---cCCeecchhhHHHhh
Q 041875 35 FKCSHCNGKLVMGNFSS---MEGVLYCKPHFEQLF 66 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~---~~g~~yC~~c~~~~~ 66 (195)
++|..|...|.+.-|+. ....-+|-.|....+
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 56677777776666552 344556666654433
No 145
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=56.36 E-value=4.5 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=21.9
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHH
Confidence 6788887777543 2234578899999876543
No 146
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.19 E-value=7.5 Score=24.99 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=40.9
Q ss_pred CCcCccCCceeecCceEEECCceecccccccccCCcccccCCeeccCCccccHHHHHhhhcCCCcc
Q 041875 99 QDKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQLFKEKGCY 164 (195)
Q Consensus 99 ~~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~f~~k~~~ 164 (195)
...|.-|.+.+.....|.--...-|+-||.|++ ..|.. ...++.+||.. |.||-.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~---q~~~~EvyCPS------G~kCpL 69 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA---QGATGEVYCPS------GEKCPL 69 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH---HHSSSCCCCTT------SSCCBC
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh---cCCCCcEECCC------CCcccc
Confidence 468999999999888888888889999999975 33322 12467889965 566653
No 147
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.11 E-value=11 Score=24.36 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=26.9
Q ss_pred CccccccccccCCCCceee-cCCeecchhhHHHhhc
Q 041875 33 ICFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFK 67 (195)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~ 67 (195)
.=|.|..|...+.+ .... ..|..||..|..+.+.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 34889999988875 5555 4899999999887764
No 148
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.74 E-value=13 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=26.7
Q ss_pred eCCcccccCcccccccccc-CCCCceee--cCCeecchhhHHHh
Q 041875 25 ADGISYHKICFKCSHCNGK-LVMGNFSS--MEGVLYCKPHFEQL 65 (195)
Q Consensus 25 ~~g~~~H~~CF~C~~C~~~-L~~~~~~~--~~g~~yC~~c~~~~ 65 (195)
+....+|. ..|+.|+.. |.+..|.- =.+--+|..||...
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 34567787 889999874 76655542 23456899999864
No 149
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.06 E-value=5.4 Score=24.60 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.4
Q ss_pred cCCeecchhhHHHh
Q 041875 52 MEGVLYCKPHFEQL 65 (195)
Q Consensus 52 ~~g~~yC~~c~~~~ 65 (195)
=++.+||..||...
T Consensus 25 CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 25 CDGDLYCARCFREG 38 (67)
T ss_dssp TTSEEECSSHHHHH
T ss_pred CCCceehHHHHHHH
Confidence 36789999999764
No 150
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.52 E-value=16 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.2
Q ss_pred ccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 34 CFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 3788999888875 34446688999999988764
No 151
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=51.13 E-value=4.4 Score=28.72 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=26.6
Q ss_pred CccccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 33 ICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+=|.|..|...|.. .....=|..||..|..+.+.
T Consensus 30 ~~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRR-PFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcC-cEECCCCCccCHHHHHHHHh
Confidence 44789999988875 35556789999999988764
No 152
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.88 E-value=11 Score=23.20 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=19.0
Q ss_pred cccccccccCCCCceeecCCee-cchhhHHHh
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVL-YCKPHFEQL 65 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~-yC~~c~~~~ 65 (195)
+.|..|...+....+ ..=|.. +|..|..+.
T Consensus 26 ~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~ 56 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV 56 (75)
T ss_dssp HSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC
T ss_pred CCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC
Confidence 467778766654322 334666 999998643
No 153
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.43 E-value=14 Score=23.35 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=25.2
Q ss_pred CCcccccccccccCceEeeC------CcccccCcc----------ccccccccCC
Q 041875 7 QEKCKACDKTVHIIDMVTAD------GISYHKICF----------KCSHCNGKLV 45 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~------g~~~H~~CF----------~C~~C~~~L~ 45 (195)
...|..|......++.+... ...||..|+ +|..|+..+.
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 46899998776544433222 268899987 4666666554
No 154
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.11 E-value=23 Score=23.21 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=9.0
Q ss_pred eecchhhHHHhhc
Q 041875 55 VLYCKPHFEQLFK 67 (195)
Q Consensus 55 ~~yC~~c~~~~~~ 67 (195)
-+.|+.||+-...
T Consensus 43 FPvCrpCyEYErk 55 (93)
T 1weo_A 43 FPACRPCYEYERR 55 (93)
T ss_dssp CCCCHHHHHHHHH
T ss_pred ChhhHHHHHHHHh
Confidence 3679999875443
No 155
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=45.38 E-value=22 Score=21.02 Aligned_cols=45 Identities=31% Similarity=0.513 Sum_probs=28.0
Q ss_pred ccccccccCCCCceee-cCCee-cchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceee
Q 041875 36 KCSHCNGKLVMGNFSS-MEGVL-YCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVY 110 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~-~~g~~-yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~ 110 (195)
.|..|.....+..+.. .=|.. +|..|..+....+ ..|+.|.++|.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------------------------~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------------------------------ASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------------------------------CBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------------------------------CcCCCcCchhh
Confidence 3555655444333321 23555 8999998775411 58999999986
No 156
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=44.99 E-value=24 Score=22.48 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=23.0
Q ss_pred CccccccccccCCCCc-e-eecCCeecchhhHHHhhc
Q 041875 33 ICFKCSHCNGKLVMGN-F-SSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 33 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~c~~~~~~ 67 (195)
.=..|..|...+..+. . ...=+..||..|....+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH
Confidence 3456888877775442 2 233478899999887654
No 157
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.95 E-value=8.6 Score=29.82 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=25.9
Q ss_pred CCCcCccCCceeecCceEEECCceeccccc----------ccccCCcccc
Q 041875 98 TQDKCTSCKKTVYPLEKVTVEGESFHKTCF----------RCSHGGCLLT 137 (195)
Q Consensus 98 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~CF----------~C~~C~~~L~ 137 (195)
....|..|...|..+..=.--+..||..|+ +|..|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 458899999999854211114677888887 4666655543
No 158
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.89 E-value=20 Score=28.34 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=26.4
Q ss_pred cCccccccccccCCCCceee-cCCeecchhhHHHhhc
Q 041875 32 KICFKCSHCNGKLVMGNFSS-MEGVLYCKPHFEQLFK 67 (195)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~c~~~~~~ 67 (195)
..=|+|..|...+.. .... .=|..||+.|..+.+.
T Consensus 179 ~~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 179 KIELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp BCCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHST
T ss_pred ceeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHH
Confidence 345889999998864 4443 5689999999987764
No 159
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=42.46 E-value=11 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=9.1
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
.+|.-|+.+|++|.
T Consensus 4 ~~C~Fcg~~IyPG~ 17 (66)
T 1vq8_U 4 RECDYCGTDIEPGT 17 (66)
T ss_dssp CBCTTTCCBCCSSC
T ss_pred eEecCcCCcccCCC
Confidence 56677777776654
No 160
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.44 E-value=12 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=19.5
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTS 139 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~ 139 (195)
..|+.|++++. .+.+=|..= |-|..|+..++..
T Consensus 62 a~CPdC~q~Le---vLkACGAvd----YFC~~chgLiSKk 94 (101)
T 2jne_A 62 ALCPDCHQPLQ---VLKACGAVD----YFCQHGHGLISKK 94 (101)
T ss_dssp EECTTTCSBCE---EEEETTEEE----EEETTTTEEECTT
T ss_pred ccCcchhhHHH---HHHHhcCcc----hhhccCCceeecc
Confidence 57888888775 445544211 3466666666544
No 161
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.43 E-value=14 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcccccccccccCc---eEeeCCcccc
Q 041875 7 QEKCKACDKTVHIID---MVTADGISYH 31 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~---~i~~~g~~~H 31 (195)
..+|.-|+.+|++|. .|..+|+.++
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 467777788777764 3444445443
No 162
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.28 E-value=9.6 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=15.1
Q ss_pred cccccccccCCCCceeecCCeecchhhHH
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
+.|..|...+... ....=|..||..|..
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~ 34 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLE 34 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHc
Confidence 4566666655432 222345566776654
No 163
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.31 E-value=28 Score=19.60 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.0
Q ss_pred cccccccccCCCCceeecCCeecchhhHHHhhc
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVLYCKPHFEQLFK 67 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~~ 67 (195)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHHHH
Confidence 6788888877653 3344578899999987753
No 164
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.60 E-value=16 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=7.4
Q ss_pred ccccCCcccccCC
Q 041875 128 RCSHGGCLLTTSS 140 (195)
Q Consensus 128 ~C~~C~~~L~~~~ 140 (195)
-|..|+..++..+
T Consensus 53 FC~~C~~LiSkkr 65 (81)
T 2jrp_A 53 FCQNGHGLISKKR 65 (81)
T ss_dssp CCTTTTCCCCTTS
T ss_pred eeccCCCEeecce
Confidence 4666666665443
No 165
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=38.48 E-value=20 Score=21.94 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=19.3
Q ss_pred cccccccccCCCCceeecCCee-cchhhHHHh
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVL-YCKPHFEQL 65 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~-yC~~c~~~~ 65 (195)
+.|..|...+.... +..=|.. +|..|..+.
T Consensus 25 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBCCEE-EETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCEE-EcCCCChhHHHHhhhcC
Confidence 56777877665433 3344666 999997643
No 166
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.13 E-value=23 Score=21.00 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=28.2
Q ss_pred CcccccccccccCceEeeCC-----cccccCccccccccccCCCCceeecCCeecchhhHH
Q 041875 8 EKCKACDKTVHIIDMVTADG-----ISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
..| .|+++-. +++|.-++ .-||..|.. |... ..++.||..|..
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccC
Confidence 345 6888754 77777666 458999876 3221 136788988854
No 167
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=36.09 E-value=13 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.612 Sum_probs=11.5
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
..|..|++.|.-++
T Consensus 26 a~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 26 ASCKKCSESIPKDS 39 (106)
T ss_dssp CBCSSSCCBCCTTC
T ss_pred CcchhhCCccCCCC
Confidence 58999999997655
No 168
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.22 E-value=26 Score=21.17 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=17.3
Q ss_pred cccccccccCCCCceeecCCee-cchhhHHHh
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVL-YCKPHFEQL 65 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~-yC~~c~~~~ 65 (195)
..|..|........+ .-=|.. +|..|..+.
T Consensus 16 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~ 46 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVL-LPCRHTCLCDGCVKYF 46 (68)
T ss_dssp SCCSSSSSSCCCCEE-TTTTBCCSCTTHHHHC
T ss_pred CCCCCcCcCCCCEEE-ECCCChhhhHHHHhcC
Confidence 456667555543222 233555 899998743
No 169
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=34.47 E-value=11 Score=29.25 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=8.7
Q ss_pred CcCccCCceee
Q 041875 100 DKCTSCKKTVY 110 (195)
Q Consensus 100 ~~C~~C~~~I~ 110 (195)
..|+.|+.+..
T Consensus 218 ~~CP~C~~~W~ 228 (238)
T 3nw0_A 218 PRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCCBCC
T ss_pred CCCCCCCCCCC
Confidence 58999988764
No 170
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=32.61 E-value=11 Score=28.17 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=18.0
Q ss_pred ccccccCCcccccCCeeccCCccccHHHHHh
Q 041875 126 CFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156 (195)
Q Consensus 126 CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~ 156 (195)
=..|..|+-..... |+++|..|+.+
T Consensus 163 ~~~C~~CGE~~~~~------g~~~C~~C~~~ 187 (191)
T 3d00_A 163 IVLCPQCREAYPAQ------DGELCLSCQGG 187 (191)
T ss_dssp EEECTTTCCEEEGG------GCSSCHHHHTT
T ss_pred CEECCcCCCChhhC------CCcCCccccCC
Confidence 34588887765443 88999999864
No 171
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.57 E-value=50 Score=20.27 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=28.7
Q ss_pred CcccccccccccCceEeeCC-----cccccCccccccccccCCCCceeecCCeecchhhHH
Q 041875 8 EKCKACDKTVHIIDMVTADG-----ISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
..| .|+++-. +++|.-++ .-||..|.. |... ..++.||..|..
T Consensus 17 ~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~~ 64 (71)
T 1wen_A 17 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 64 (71)
T ss_dssp CCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTSS
T ss_pred CEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCCc
Confidence 467 6888754 77777666 467998875 3221 136788988864
No 172
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.08 E-value=25 Score=20.79 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=28.2
Q ss_pred CcccccccccccCceEeeCC-----cccccCccccccccccCCCCceeecCCeecchhhHH
Q 041875 8 EKCKACDKTVHIIDMVTADG-----ISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
..| .|+++-. +++|.-++ .-||..|.. |... ..++.||..|..
T Consensus 10 ~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccC
Confidence 345 7888754 77777666 467998876 3221 136788988854
No 173
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.29 E-value=19 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=11.7
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
..|..|++.|.-++
T Consensus 21 A~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 21 SSCKTCKSVINKEN 34 (114)
T ss_dssp CBCSSSCCBCCSSS
T ss_pred CCchhhCCccCCCC
Confidence 58999999998665
No 174
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=30.88 E-value=13 Score=25.35 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=11.7
Q ss_pred CCcccccccccccCc
Q 041875 7 QEKCKACDKTVHIID 21 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~ 21 (195)
-..|..|++.|.-++
T Consensus 19 Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQ 33 (111)
T ss_dssp CCBCTTTCCBCCTTC
T ss_pred CccccccCCCccCCc
Confidence 468999999997554
No 175
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=30.49 E-value=23 Score=21.85 Aligned_cols=49 Identities=12% Similarity=0.316 Sum_probs=28.2
Q ss_pred CcCccCCceeecCceEEEC--CceecccccccccCCcccccCCeeccCCccccHHHHHhh
Q 041875 100 DKCTSCKKTVYPLEKVTVE--GESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQL 157 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~--~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~~ 157 (195)
..|..|+++-....+|.-. +.-||..|.. |... ...++.-||..|..++
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-------~~~~--~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-------IMAA--PPEEMQWFCPKCANKI 69 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-------CSSC--CCSSSCCCCTTTHHHH
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-------CCcc--CCCCCCEEChhccCch
Confidence 5799999876533344422 4556877643 1111 1124678898887654
No 176
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.87 E-value=19 Score=21.89 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=18.6
Q ss_pred CCCCcccccccccccC-ceEeeC---CcccccCc
Q 041875 5 GTQEKCKACDKTVHII-DMVTAD---GISYHKIC 34 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~~-~~i~~~---g~~~H~~C 34 (195)
.....|..|++++.++ ..|.-+ .+-||..|
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 3456899999998654 356555 45567666
No 177
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.47 E-value=34 Score=20.45 Aligned_cols=43 Identities=23% Similarity=0.469 Sum_probs=28.5
Q ss_pred CcccccccccccCceEeeCC-----cccccCccccccccccCCCCceeecCCeecchhhHH
Q 041875 8 EKCKACDKTVHIIDMVTADG-----ISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
..| .|+++-. +++|.-++ .-||..|.. |... ..++.||..|..
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHT
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCccc
Confidence 345 7888744 77777666 567998876 2221 247889998864
No 178
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=29.33 E-value=30 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=18.2
Q ss_pred cccccccccCCCCceeecCCee-cchhhHHHh
Q 041875 35 FKCSHCNGKLVMGNFSSMEGVL-YCKPHFEQL 65 (195)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~-yC~~c~~~~ 65 (195)
..|..|...+.... +..=|.. +|..|..+.
T Consensus 19 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 19 MLCMVCCEEEINST-FCPCGHTVCCESCAAQL 49 (79)
T ss_dssp TBCTTTSSSBCCEE-EETTCBCCBCHHHHTTC
T ss_pred CEeEEeCcccCcEE-EECCCCHHHHHHHHHhc
Confidence 35777766655432 3344665 899998643
No 179
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=29.04 E-value=38 Score=19.97 Aligned_cols=45 Identities=24% Similarity=0.537 Sum_probs=28.1
Q ss_pred ccccccccCCCCceee-cCCee-cchhhHHHhhccCCccccCCCccCCCCCCCCCCCCccccCCCCCcCccCCceee
Q 041875 36 KCSHCNGKLVMGNFSS-MEGVL-YCKPHFEQLFKETGSFTNKLKPAQKNGLTRTPSKFSTMFCGTQDKCTSCKKTVY 110 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~-~~g~~-yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~C~~C~~~I~ 110 (195)
.|..|-....+..+.. .=|.. +|..|..+....+ ..|+.|.++|.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------------------------~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------------------------------KPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------------------------------CCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------------------------------CcCCCcCcchh
Confidence 4556655554433321 23555 7999988765421 57999999985
No 180
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=28.96 E-value=16 Score=25.06 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=11.4
Q ss_pred CCcccccccccccCc
Q 041875 7 QEKCKACDKTVHIID 21 (195)
Q Consensus 7 ~~~C~~C~~~I~~~~ 21 (195)
-..|..|++.|..++
T Consensus 38 RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 38 RASCKKCSESIPKDS 52 (116)
T ss_dssp CCBCTTTCCBCCTTS
T ss_pred CccCcccCCccCCCC
Confidence 358999999987554
No 181
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.51 E-value=36 Score=20.74 Aligned_cols=26 Identities=23% Similarity=0.717 Sum_probs=14.5
Q ss_pred ccccccccCCCCceeecCCeecchhh
Q 041875 36 KCSHCNGKLVMGNFSSMEGVLYCKPH 61 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (195)
+|..|++.+.-..|.=+=|..||..|
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cChhhCCccCccCEEeecCCEecccc
Confidence 44566665554445445566666554
No 182
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.87 E-value=42 Score=21.50 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=24.1
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccCCeec
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTSSYAA 143 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~~~~~ 143 (195)
-.|+.|++... ....-..| .|..|+..+.++.|..
T Consensus 28 y~Cp~CG~~~v----~r~atGiW-----~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 28 HACPNCGEDRV----DRQGTGIW-----QCSYCDYKFTGGSYKP 62 (83)
T ss_dssp EECSSSCCEEE----EEEETTEE-----EETTTCCEEECCSSSS
T ss_pred CcCCCCCCcce----eccCCCeE-----ECCCCCCEecCCEecc
Confidence 47999998553 22333455 5999999998876654
No 183
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.17 E-value=31 Score=22.20 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=32.1
Q ss_pred CcCccCCceeec--CceEE--ECCceecccccccccCCcccccCCeeccCCccccHHHHHh
Q 041875 100 DKCTSCKKTVYP--LEKVT--VEGESFHKTCFRCSHGGCLLTTSSYAALDGILYCKSHFAQ 156 (195)
Q Consensus 100 ~~C~~C~~~I~~--~~~v~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~c~~~ 156 (195)
..|.+|+..-.. .++|. .-+..||..|+. -+|.........|.-||..|-.+
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccch
Confidence 579999986432 23343 346889998865 23332112244678899999764
No 184
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.62 E-value=27 Score=25.32 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=9.8
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
.+|.-|+.+|++|.
T Consensus 4 ~~C~Fcg~~IyPG~ 17 (157)
T 2zkr_u 4 ELCSFSGYKIYPGH 17 (157)
T ss_dssp CBCTTTCCBCCTTC
T ss_pred eeecCcCCcccCCC
Confidence 56777777777764
No 185
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.35 E-value=38 Score=20.62 Aligned_cols=26 Identities=31% Similarity=0.700 Sum_probs=11.9
Q ss_pred ccccccccCCCCceeecCCeecchhh
Q 041875 36 KCSHCNGKLVMGNFSSMEGVLYCKPH 61 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (195)
+|..|++.|.-..|.=+=|..||..|
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 17 RCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp SCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeEeecCCEecccC
Confidence 34455554443334334455555443
No 186
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.76 E-value=30 Score=15.25 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=8.3
Q ss_pred cccccCCccccc
Q 041875 127 FRCSHGGCLLTT 138 (195)
Q Consensus 127 F~C~~C~~~L~~ 138 (195)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567788877654
No 187
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.90 E-value=45 Score=22.29 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=15.0
Q ss_pred CCCccccccccc------ccCceEe--eCCcccccCcc
Q 041875 6 TQEKCKACDKTV------HIIDMVT--ADGISYHKICF 35 (195)
Q Consensus 6 ~~~~C~~C~~~I------~~~~~i~--~~g~~~H~~CF 35 (195)
..++|..|...- ..+++|. .=++.||..|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl 41 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCL 41 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHH
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchh
Confidence 445677775431 1123332 23456777776
No 188
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.84 E-value=65 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=27.1
Q ss_pred CcccccccccccCceEeeCC-----cccccCccccccccccCCCCceeecCCeecchhhHH
Q 041875 8 EKCKACDKTVHIIDMVTADG-----ISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFE 63 (195)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~ 63 (195)
..| .|+++-. +++|.-++ .-||..|.. |... ..++.||..|..
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~~ 84 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 84 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCccC
Confidence 356 7887754 66776665 347888865 3221 136788988854
No 189
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=23.52 E-value=25 Score=25.39 Aligned_cols=14 Identities=7% Similarity=-0.247 Sum_probs=9.3
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
.+|.-|+.+|++|.
T Consensus 4 ~~CsFcg~~IyPG~ 17 (155)
T 3izc_Z 4 EIDSFSGAKIYPGR 17 (155)
T ss_dssp EECTTTCSEECTTC
T ss_pred eEecCcCCcccCCC
Confidence 46777777777654
No 190
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.47 E-value=20 Score=19.92 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=10.5
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
.+|..|++||.-..
T Consensus 18 RvC~~CgkPi~lsA 31 (44)
T 2lo3_A 18 RVCEKCGKPLALTA 31 (44)
T ss_dssp EECTTTCCEEETTT
T ss_pred hhhcccCCcchHHH
Confidence 47999999987443
No 191
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.43 E-value=52 Score=20.62 Aligned_cols=27 Identities=30% Similarity=0.666 Sum_probs=16.5
Q ss_pred ccccccccCCCCceeecCCeecchhhH
Q 041875 36 KCSHCNGKLVMGNFSSMEGVLYCKPHF 62 (195)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~c~ 62 (195)
+|..|++.+.-..|.=+=+..||..|-
T Consensus 27 RC~~C~kkvgL~~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 27 RCLSCNKKVGVTGFKCRCGSTFCGTHR 53 (74)
T ss_dssp BCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred cchhhcCcccccceEeccCCEeccccC
Confidence 455677766655555556667776553
No 192
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=23.08 E-value=25 Score=24.01 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.7
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
..|..|++.|.-++
T Consensus 16 A~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 16 AGCKKCKEKIVKGV 29 (117)
T ss_dssp EECTTSSCEECTTC
T ss_pred ccchhhCcccCCCC
Confidence 58999999998665
No 193
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.76 E-value=34 Score=15.28 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.6
Q ss_pred cccccccccCCC
Q 041875 35 FKCSHCNGKLVM 46 (195)
Q Consensus 35 F~C~~C~~~L~~ 46 (195)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888877653
No 194
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.75 E-value=84 Score=18.58 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCcCcc--CCceeecCceEEECCceecccccccccCCcc
Q 041875 98 TQDKCTS--CKKTVYPLEKVTVEGESFHKTCFRCSHGGCL 135 (195)
Q Consensus 98 ~~~~C~~--C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~ 135 (195)
+..+|.+ |...|-+--.+...++.| +|..|+..
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W-----~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLW-----ACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEE-----ECSSSCCE
T ss_pred CCcccCCCCCCeEECCceEEECCCCEE-----EcccCCCc
Confidence 3479998 999888765666667777 57777664
No 195
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.48 E-value=31 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=16.4
Q ss_pred CCCcccccccccccCc---eEeeCCcccc
Q 041875 6 TQEKCKACDKTVHIID---MVTADGISYH 31 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~---~i~~~g~~~H 31 (195)
...+|.-|+.+|++|. +|..+|+.|+
T Consensus 4 k~~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 32 (158)
T 4a17_T 4 RTGTCSFCEYRIYPGRGQRFIAKDGRGFF 32 (158)
T ss_dssp CCEECTTTCCEECTTCCEEEECTTSCEEE
T ss_pred EEEEecCcCCcccCCCCeEEEeeCCceEE
Confidence 3467888888888765 3444555444
No 196
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=22.17 E-value=48 Score=20.26 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=4.0
Q ss_pred cccccCcc
Q 041875 28 ISYHKICF 35 (195)
Q Consensus 28 ~~~H~~CF 35 (195)
+.||..|+
T Consensus 41 ~~yH~~Cl 48 (70)
T 3asl_A 41 MAFHIYCL 48 (70)
T ss_dssp CEEEGGGS
T ss_pred CceecccC
Confidence 35555553
No 197
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=21.97 E-value=35 Score=24.81 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.2
Q ss_pred CCCcccccccccccCc
Q 041875 6 TQEKCKACDKTVHIID 21 (195)
Q Consensus 6 ~~~~C~~C~~~I~~~~ 21 (195)
...+|.-|+.+|+++.
T Consensus 4 k~e~CsFcG~~IyPG~ 19 (162)
T 3iz5_Z 4 KTELCRFSGQKIYPGK 19 (162)
T ss_dssp SCEECTTTCSEECSSC
T ss_pred EEEEecCcCCcccCCC
Confidence 3467777888887764
No 198
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.96 E-value=29 Score=15.47 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=8.2
Q ss_pred cccccCCccccc
Q 041875 127 FRCSHGGCLLTT 138 (195)
Q Consensus 127 F~C~~C~~~L~~ 138 (195)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 567778776653
No 199
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.89 E-value=65 Score=21.22 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=25.6
Q ss_pred ccccCccccccccc-cCCCCcee--ecCCeecchhhHHHh
Q 041875 29 SYHKICFKCSHCNG-KLVMGNFS--SMEGVLYCKPHFEQL 65 (195)
Q Consensus 29 ~~H~~CF~C~~C~~-~L~~~~~~--~~~g~~yC~~c~~~~ 65 (195)
.+|.. +.|..|+. ++.+..|. .=.+--+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 57776 88999996 67666554 234556899998754
No 200
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.86 E-value=66 Score=19.01 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=30.6
Q ss_pred CCCCccccccccccc--CceEee--CCcccccCccccccccccCCCCceeecCCeecchhhHHH
Q 041875 5 GTQEKCKACDKTVHI--IDMVTA--DGISYHKICFKCSHCNGKLVMGNFSSMEGVLYCKPHFEQ 64 (195)
Q Consensus 5 ~~~~~C~~C~~~I~~--~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c~~~ 64 (195)
+....|..|+..-.. +.+|.- =++.||..|+.= +|... ....++.-||..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~~-~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDSS-VIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCHH-HHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----ccccc-ccCCCCCEECCCCcCc
Confidence 345689999876321 444433 345888888432 22210 0113577889988754
No 201
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=20.76 E-value=69 Score=17.69 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=15.0
Q ss_pred ccccCCcccccCCeeccCCccccHHHHH
Q 041875 128 RCSHGGCLLTTSSYAALDGILYCKSHFA 155 (195)
Q Consensus 128 ~C~~C~~~L~~~~~~~~dg~~yC~~c~~ 155 (195)
.|..|+..-...=-...+|..+|.+|-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 30 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHH
Confidence 3555665433211112357788999854
No 202
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.70 E-value=62 Score=20.48 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=7.4
Q ss_pred CccccHHHHHhhh
Q 041875 146 GILYCKSHFAQLF 158 (195)
Q Consensus 146 g~~yC~~c~~~~f 158 (195)
|..||..|+.+.+
T Consensus 27 gH~FC~~Cl~~~~ 39 (94)
T 1wim_A 27 QCIFCTLCLKQYV 39 (94)
T ss_dssp TEEEEHHHHHHHH
T ss_pred CCcccHHHHHHHH
Confidence 5666666654433
No 203
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.24 E-value=36 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=11.7
Q ss_pred CcccccccccccCc
Q 041875 8 EKCKACDKTVHIID 21 (195)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (195)
..|..|+..|.-++
T Consensus 28 A~CK~C~~kI~Kge 41 (134)
T 2cs2_A 28 STCKGCMEKIEKGQ 41 (134)
T ss_dssp CBCSSSCCBCCTTS
T ss_pred ccchhcCCcccCCC
Confidence 58999999998665
No 204
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.21 E-value=1.1e+02 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.2
Q ss_pred ccccHHHHHhhhcCCC
Q 041875 147 ILYCKSHFAQLFKEKG 162 (195)
Q Consensus 147 ~~yC~~c~~~~f~~k~ 162 (195)
+.||..|..+++|+..
T Consensus 115 r~FC~~Ci~~n~g~~~ 130 (386)
T 2pv0_B 115 RCYCFECVDSLVGPGT 130 (386)
T ss_dssp CEECHHHHHHHTCTTH
T ss_pred cchHHHHHHHhcChhH
Confidence 4578888877776653
No 205
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.06 E-value=49 Score=20.53 Aligned_cols=29 Identities=28% Similarity=0.672 Sum_probs=21.0
Q ss_pred CcCccCCceeecCceEEECCceecccccccccCCcccccC
Q 041875 100 DKCTSCKKTVYPLEKVTVEGESFHKTCFRCSHGGCLLTTS 139 (195)
Q Consensus 100 ~~C~~C~~~I~~~~~v~~~~~~~H~~CF~C~~C~~~L~~~ 139 (195)
..|+ |+..++ .-.+..||. |. ||+.|...
T Consensus 5 v~C~-C~~~~~-----~~~~~kT~~----C~-CG~~~~~~ 33 (71)
T 1gh9_A 5 FRCD-CGRALY-----SREGAKTRK----CV-CGRTVNVK 33 (71)
T ss_dssp EEET-TSCCEE-----EETTCSEEE----ET-TTEEEECC
T ss_pred EECC-CCCEEE-----EcCCCcEEE----CC-CCCeeeec
Confidence 4788 987654 455788875 76 99988754
Done!