Query 041877
Match_columns 254
No_of_seqs 272 out of 1386
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 7.7E-20 2.6E-24 136.4 8.7 63 31-93 14-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.8 9.2E-20 3.1E-24 135.4 7.2 63 31-93 14-76 (80)
3 2cue_A Paired box protein PAX6 99.8 5.6E-19 1.9E-23 131.7 9.5 63 32-94 5-67 (80)
4 2dmu_A Homeobox protein goosec 99.8 4.1E-19 1.4E-23 129.1 8.2 62 32-93 5-66 (70)
5 2kt0_A Nanog, homeobox protein 99.8 4.2E-19 1.4E-23 133.2 8.2 63 31-93 19-81 (84)
6 1wh5_A ZF-HD homeobox family p 99.8 2.4E-19 8.2E-24 134.3 6.8 60 32-91 15-78 (80)
7 2cra_A Homeobox protein HOX-B1 99.8 2.9E-19 1E-23 129.9 6.8 62 32-93 5-66 (70)
8 2e1o_A Homeobox protein PRH; D 99.8 5.8E-19 2E-23 128.4 8.1 61 33-93 6-66 (70)
9 2h1k_A IPF-1, pancreatic and d 99.8 4.2E-19 1.4E-23 126.6 7.1 59 34-92 3-61 (63)
10 1nk2_P Homeobox protein VND; h 99.8 7.1E-19 2.4E-23 130.3 8.6 63 33-95 8-70 (77)
11 2dmq_A LIM/homeobox protein LH 99.8 6.7E-19 2.3E-23 131.0 8.4 62 32-93 5-66 (80)
12 1fjl_A Paired protein; DNA-bin 99.8 5.8E-19 2E-23 131.8 8.0 63 31-93 15-77 (81)
13 2vi6_A Homeobox protein nanog; 99.8 2.4E-19 8.2E-24 127.4 5.6 60 34-93 3-62 (62)
14 1puf_A HOX-1.7, homeobox prote 99.8 1.4E-18 4.8E-23 128.7 9.8 63 32-94 11-73 (77)
15 2dms_A Homeobox protein OTX2; 99.8 6.3E-19 2.2E-23 131.3 7.8 62 32-93 5-66 (80)
16 2da2_A Alpha-fetoprotein enhan 99.8 6.2E-19 2.1E-23 128.0 7.2 62 32-93 5-66 (70)
17 1ig7_A Homeotic protein MSX-1; 99.8 9E-19 3.1E-23 122.6 7.3 57 35-91 1-57 (58)
18 3a01_A Homeodomain-containing 99.8 8.5E-19 2.9E-23 134.6 7.9 65 32-96 15-79 (93)
19 2da1_A Alpha-fetoprotein enhan 99.8 6.6E-19 2.3E-23 127.8 6.7 63 31-93 4-66 (70)
20 1wh7_A ZF-HD homeobox family p 99.8 4.5E-19 1.5E-23 133.0 6.0 59 32-91 15-78 (80)
21 2djn_A Homeobox protein DLX-5; 99.8 5.6E-19 1.9E-23 128.5 6.3 63 31-93 4-66 (70)
22 2hdd_A Protein (engrailed home 99.8 7.2E-19 2.5E-23 124.5 6.7 58 34-91 3-60 (61)
23 2ecc_A Homeobox and leucine zi 99.8 1E-18 3.5E-23 130.0 6.8 59 35-93 4-62 (76)
24 1zq3_P PRD-4, homeotic bicoid 99.7 2.3E-18 7.7E-23 124.7 7.9 59 35-93 3-61 (68)
25 1uhs_A HOP, homeodomain only p 99.7 2.4E-18 8E-23 125.8 7.9 59 35-93 2-61 (72)
26 2da5_A Zinc fingers and homeob 99.7 1.8E-18 6.3E-23 127.6 7.3 59 35-93 8-66 (75)
27 1ahd_P Antennapedia protein mu 99.7 1.4E-18 4.8E-23 125.9 6.6 59 35-93 3-61 (68)
28 1jgg_A Segmentation protein EV 99.7 1.8E-18 6.2E-23 122.1 6.9 58 35-92 2-59 (60)
29 1yz8_P Pituitary homeobox 2; D 99.7 8.3E-19 2.8E-23 126.9 5.2 60 34-93 3-62 (68)
30 2l7z_A Homeobox protein HOX-A1 99.7 2.1E-18 7.1E-23 126.6 7.1 61 33-93 6-66 (73)
31 2da4_A Hypothetical protein DK 99.7 1.1E-18 3.8E-23 130.0 5.7 61 33-93 7-71 (80)
32 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-18 3.6E-23 125.5 5.3 60 34-93 3-62 (66)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 2.4E-18 8.4E-23 124.5 7.3 60 34-93 2-61 (68)
34 1b8i_A Ultrabithorax, protein 99.7 1.5E-18 5.2E-23 129.8 6.2 61 33-93 19-79 (81)
35 2hi3_A Homeodomain-only protei 99.7 3.7E-18 1.3E-22 125.2 7.9 59 35-93 3-62 (73)
36 3rkq_A Homeobox protein NKX-2. 99.7 2.9E-18 9.9E-23 119.5 7.0 56 35-90 3-58 (58)
37 2r5y_A Homeotic protein sex co 99.7 2E-18 7E-23 130.8 6.5 62 32-93 26-87 (88)
38 2k40_A Homeobox expressed in E 99.7 2.2E-18 7.5E-23 124.2 6.0 61 35-95 2-62 (67)
39 3a03_A T-cell leukemia homeobo 99.7 3.4E-18 1.2E-22 119.3 6.7 54 39-92 2-55 (56)
40 2m0c_A Homeobox protein arista 99.7 4.1E-18 1.4E-22 124.8 7.5 62 32-93 7-68 (75)
41 3a02_A Homeobox protein arista 99.7 2.6E-18 9E-23 121.2 6.1 57 37-93 2-58 (60)
42 3nar_A ZHX1, zinc fingers and 99.7 2.7E-18 9.2E-23 132.4 6.1 63 33-95 24-86 (96)
43 1akh_A Protein (mating-type pr 99.7 3E-18 1E-22 121.1 5.7 58 33-90 4-61 (61)
44 1b72_A Protein (homeobox prote 99.7 4.9E-18 1.7E-22 131.1 7.1 63 32-94 32-94 (97)
45 1x2n_A Homeobox protein pknox1 99.7 8.6E-18 2.9E-22 123.0 7.8 63 32-94 5-70 (73)
46 2dn0_A Zinc fingers and homeob 99.7 6.8E-18 2.3E-22 124.7 6.5 59 35-93 9-67 (76)
47 2ecb_A Zinc fingers and homeob 99.7 7.1E-18 2.4E-22 129.0 6.6 58 36-93 13-70 (89)
48 2ly9_A Zinc fingers and homeob 99.7 8.7E-18 3E-22 123.2 6.5 59 35-93 7-65 (74)
49 2cqx_A LAG1 longevity assuranc 99.7 2.9E-18 9.9E-23 126.0 3.7 59 35-93 9-68 (72)
50 1puf_B PRE-B-cell leukemia tra 99.7 9.3E-18 3.2E-22 122.8 6.3 61 35-95 2-65 (73)
51 1k61_A Mating-type protein alp 99.7 1.3E-17 4.6E-22 117.4 6.8 56 37-92 1-59 (60)
52 2cuf_A FLJ21616 protein; homeo 99.7 2.3E-17 7.9E-22 126.8 8.0 63 31-93 4-81 (95)
53 1b72_B Protein (PBX1); homeodo 99.7 2.2E-17 7.6E-22 124.6 7.7 61 35-95 2-65 (87)
54 1du6_A PBX1, homeobox protein 99.7 1E-17 3.4E-22 119.6 4.8 58 34-91 3-63 (64)
55 2dmp_A Zinc fingers and homeob 99.7 4.7E-17 1.6E-21 124.0 8.7 58 36-93 15-72 (89)
56 2dmn_A Homeobox protein TGIF2L 99.7 5E-17 1.7E-21 122.2 8.1 62 32-93 5-69 (83)
57 1le8_B Mating-type protein alp 99.7 2E-17 6.7E-22 124.3 5.6 62 35-96 3-67 (83)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 5.5E-17 1.9E-21 122.7 7.1 59 33-91 26-87 (87)
59 3nau_A Zinc fingers and homeob 99.7 5.8E-17 2E-21 117.2 6.6 53 41-93 11-63 (66)
60 1au7_A Protein PIT-1, GHF-1; c 99.7 3.6E-17 1.2E-21 135.2 5.9 61 32-92 85-145 (146)
61 2l9r_A Homeobox protein NKX-3. 99.7 2.6E-17 8.9E-22 120.2 4.2 55 40-94 10-64 (69)
62 1e3o_C Octamer-binding transcr 99.7 6.1E-17 2.1E-21 135.5 6.4 61 32-92 99-159 (160)
63 1x2m_A LAG1 longevity assuranc 99.7 4.3E-17 1.5E-21 117.5 4.2 50 43-92 9-59 (64)
64 2xsd_C POU domain, class 3, tr 99.7 7.5E-17 2.6E-21 135.7 6.1 63 31-93 96-158 (164)
65 3d1n_I POU domain, class 6, tr 99.7 1.4E-16 4.6E-21 132.1 7.4 60 32-91 91-150 (151)
66 2da6_A Hepatocyte nuclear fact 99.6 4.7E-16 1.6E-20 121.6 8.9 61 33-93 5-86 (102)
67 2e19_A Transcription factor 8; 99.6 1.8E-16 6.1E-21 113.9 6.0 53 40-92 9-61 (64)
68 1wi3_A DNA-binding protein SAT 99.6 4E-16 1.4E-20 113.4 6.9 58 33-90 6-64 (71)
69 3l1p_A POU domain, class 5, tr 99.6 3.6E-16 1.2E-20 130.3 6.3 61 32-92 94-154 (155)
70 1lfb_A Liver transcription fac 99.6 2.7E-16 9.3E-21 122.3 4.5 62 32-93 7-89 (99)
71 3k2a_A Homeobox protein MEIS2; 99.6 6.7E-16 2.3E-20 111.7 5.6 59 40-98 4-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 5.6E-16 1.9E-20 129.7 5.4 63 31-93 94-156 (164)
73 2da7_A Zinc finger homeobox pr 99.4 2.3E-13 7.7E-18 99.3 5.7 46 43-88 14-59 (71)
74 2lk2_A Homeobox protein TGIF1; 99.4 4.5E-13 1.6E-17 102.2 6.8 54 40-93 11-67 (89)
75 1ic8_A Hepatocyte nuclear fact 99.4 9E-14 3.1E-18 120.1 3.1 60 32-91 113-193 (194)
76 1mh3_A Maltose binding-A1 home 99.3 9.5E-13 3.3E-17 121.4 4.2 55 36-90 367-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.3 3.5E-12 1.2E-16 111.9 5.8 56 34-89 142-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 4.7E-10 1.6E-14 72.2 -2.4 22 76-97 1-22 (37)
79 2ys9_A Homeobox and leucine zi 94.6 0.03 1E-06 40.4 3.7 39 46-84 18-56 (70)
80 2jn6_A Protein CGL2762, transp 88.9 0.43 1.5E-05 35.0 4.1 43 38-84 3-46 (97)
81 1gu4_A CAAT/enhancer binding p 85.2 2.6 9E-05 30.7 6.5 45 86-133 29-73 (78)
82 1hlv_A CENP-B, major centromer 84.4 2.3 7.9E-05 32.3 6.3 50 36-88 3-52 (131)
83 1hjb_A Ccaat/enhancer binding 83.9 3 0.0001 31.1 6.4 34 99-132 39-72 (87)
84 2glo_A Brinker CG9653-PA; prot 83.4 1.5 5E-05 29.3 4.2 46 37-83 2-47 (59)
85 1ci6_A Transcription factor AT 78.7 7.7 0.00026 26.8 6.7 36 96-131 23-58 (63)
86 1t2k_D Cyclic-AMP-dependent tr 77.1 9.3 0.00032 26.0 6.7 36 96-131 22-57 (61)
87 1gd2_E Transcription factor PA 76.8 6.7 0.00023 27.9 6.0 36 94-129 34-69 (70)
88 2elh_A CG11849-PA, LD40883P; s 76.1 7 0.00024 28.0 6.1 44 35-83 17-60 (87)
89 1jnm_A Proto-oncogene C-JUN; B 75.5 10 0.00034 25.9 6.5 37 96-132 22-58 (62)
90 1tc3_C Protein (TC3 transposas 75.2 5.3 0.00018 24.1 4.7 41 39-84 4-44 (51)
91 1gd2_E Transcription factor PA 75.2 6.8 0.00023 27.9 5.7 50 82-131 14-64 (70)
92 2wt7_A Proto-oncogene protein 73.7 13 0.00043 25.6 6.7 36 96-131 23-58 (63)
93 1jko_C HIN recombinase, DNA-in 71.2 2.4 8.3E-05 26.3 2.3 42 40-86 5-46 (52)
94 2wt7_B Transcription factor MA 70.1 23 0.0008 26.4 7.8 60 72-131 17-83 (90)
95 3hug_A RNA polymerase sigma fa 68.3 14 0.00046 26.4 6.1 46 41-91 38-83 (92)
96 2yy0_A C-MYC-binding protein; 61.6 16 0.00055 24.5 5.0 31 96-126 19-49 (53)
97 3s4r_A Vimentin; alpha-helix, 59.2 40 0.0014 24.9 7.4 56 76-132 37-92 (93)
98 1p4w_A RCSB; solution structur 58.6 29 0.00099 25.6 6.5 46 38-89 32-77 (99)
99 2o8x_A Probable RNA polymerase 57.6 11 0.00037 25.0 3.6 46 40-90 15-60 (70)
100 3c57_A Two component transcrip 57.2 16 0.00054 26.5 4.8 46 40-91 27-72 (95)
101 1fse_A GERE; helix-turn-helix 56.8 27 0.00092 23.2 5.7 46 39-90 10-55 (74)
102 1t2k_D Cyclic-AMP-dependent tr 56.7 42 0.0014 22.6 7.1 43 85-127 18-60 (61)
103 2jee_A YIIU; FTSZ, septum, coi 55.0 36 0.0012 24.9 6.2 13 115-127 53-65 (81)
104 1je8_A Nitrate/nitrite respons 54.6 27 0.00093 24.4 5.6 47 39-91 20-66 (82)
105 2yy0_A C-MYC-binding protein; 53.9 16 0.00056 24.4 3.9 32 102-133 18-49 (53)
106 1xsv_A Hypothetical UPF0122 pr 52.6 62 0.0021 24.2 7.7 48 40-92 25-72 (113)
107 3mzy_A RNA polymerase sigma-H 51.7 31 0.0011 25.9 5.9 45 40-90 109-153 (164)
108 1s7o_A Hypothetical UPF0122 pr 50.5 55 0.0019 24.6 7.1 48 40-92 22-69 (113)
109 2dgc_A Protein (GCN4); basic d 50.4 37 0.0013 23.4 5.4 26 98-123 32-57 (63)
110 1ci6_A Transcription factor AT 49.7 59 0.002 22.2 6.8 42 86-127 20-61 (63)
111 1iuf_A Centromere ABP1 protein 49.5 23 0.0008 27.6 4.9 48 35-85 6-60 (144)
112 2rnj_A Response regulator prot 48.3 29 0.001 24.6 4.9 46 40-91 29-74 (91)
113 1x3u_A Transcriptional regulat 47.7 30 0.001 23.3 4.8 45 41-91 17-61 (79)
114 2rn7_A IS629 ORFA; helix, all 47.4 27 0.00093 25.4 4.8 46 38-83 4-52 (108)
115 1go4_E MAD1 (mitotic arrest de 47.0 36 0.0012 25.8 5.3 33 96-128 12-44 (100)
116 2p7v_B Sigma-70, RNA polymeras 45.1 23 0.00077 23.6 3.7 50 40-90 5-54 (68)
117 3i5g_B Myosin regulatory light 44.6 40 0.0014 26.0 5.6 41 36-76 5-50 (153)
118 1ku3_A Sigma factor SIGA; heli 44.2 50 0.0017 22.2 5.4 50 40-90 10-59 (73)
119 3mq7_A Bone marrow stromal ant 42.2 61 0.0021 25.3 6.0 57 73-129 41-97 (121)
120 1rp3_A RNA polymerase sigma fa 41.3 27 0.00091 28.2 4.2 47 40-91 187-233 (239)
121 1jnm_A Proto-oncogene C-JUN; B 40.0 54 0.0018 22.1 5.0 33 91-123 24-56 (62)
122 3ulq_B Transcriptional regulat 40.0 58 0.002 23.3 5.5 44 37-86 26-69 (90)
123 1hjb_A Ccaat/enhancer binding 39.3 95 0.0032 22.8 6.5 37 94-130 41-77 (87)
124 2lv7_A Calcium-binding protein 38.7 57 0.0019 23.6 5.3 47 37-83 26-79 (100)
125 1u78_A TC3 transposase, transp 38.4 52 0.0018 24.4 5.2 41 39-84 5-45 (141)
126 3s9g_A Protein hexim1; cyclin 38.2 69 0.0024 24.3 5.6 22 105-126 67-88 (104)
127 2xi8_A Putative transcription 36.7 17 0.00059 23.2 1.9 23 64-86 17-39 (66)
128 2cqq_A RSGI RUH-037, DNAJ homo 36.6 90 0.0031 21.8 5.8 42 38-79 8-49 (72)
129 2jee_A YIIU; FTSZ, septum, coi 36.4 1.2E+02 0.0042 22.0 6.7 38 94-131 18-62 (81)
130 2r1j_L Repressor protein C2; p 35.6 19 0.00064 23.2 1.9 24 64-87 21-44 (68)
131 1tty_A Sigma-A, RNA polymerase 35.2 64 0.0022 22.5 5.0 51 40-91 18-68 (87)
132 3bd1_A CRO protein; transcript 35.1 20 0.00069 24.4 2.2 23 64-86 14-36 (79)
133 1deb_A APC protein, adenomatou 34.9 86 0.0029 20.9 5.0 22 98-119 5-26 (54)
134 2wt7_B Transcription factor MA 34.7 1.4E+02 0.0047 22.1 6.9 50 81-130 38-89 (90)
135 3gpv_A Transcriptional regulat 34.2 1.7E+02 0.0057 22.9 8.8 80 37-131 51-130 (148)
136 2k27_A Paired box protein PAX- 34.0 1.2E+02 0.0041 23.3 6.9 41 39-84 24-64 (159)
137 2x48_A CAG38821; archeal virus 34.0 49 0.0017 20.8 3.8 36 43-83 18-53 (55)
138 1or7_A Sigma-24, RNA polymeras 33.6 51 0.0017 25.7 4.6 46 41-91 141-186 (194)
139 1zug_A Phage 434 CRO protein; 33.3 21 0.00071 23.3 1.9 24 64-87 19-42 (71)
140 3bs3_A Putative DNA-binding pr 33.0 22 0.00074 23.6 2.0 23 64-86 26-48 (76)
141 2x7l_M HIV REV; nuclear export 33.0 20 0.00068 27.9 1.9 34 46-93 15-48 (115)
142 3lph_A Protein REV; helix-loop 32.9 40 0.0014 24.1 3.4 35 45-93 17-51 (72)
143 3v86_A De novo design helix; c 32.8 61 0.0021 18.4 3.4 22 108-129 5-26 (27)
144 2dgc_A Protein (GCN4); basic d 32.6 1.2E+02 0.004 20.7 6.8 33 101-133 28-60 (63)
145 3dcf_A Transcriptional regulat 32.2 19 0.00067 28.0 1.9 45 45-90 36-80 (218)
146 2wt7_A Proto-oncogene protein 31.9 1.2E+02 0.004 20.5 7.5 41 86-126 20-60 (63)
147 1nkp_B MAX protein, MYC proto- 31.6 1.1E+02 0.0037 21.6 5.7 32 98-129 49-80 (83)
148 2jpc_A SSRB; DNA binding prote 31.3 34 0.0012 21.9 2.7 27 65-91 17-43 (61)
149 1adr_A P22 C2 repressor; trans 31.2 24 0.00081 23.3 1.9 24 64-87 21-44 (76)
150 1fi6_A EH domain protein REPS1 31.2 59 0.002 22.7 4.2 43 41-83 3-50 (92)
151 2b5a_A C.BCLI; helix-turn-heli 30.2 25 0.00087 23.3 2.0 23 64-86 26-48 (77)
152 2a6c_A Helix-turn-helix motif; 29.5 39 0.0013 23.3 2.9 23 64-86 34-56 (83)
153 3omt_A Uncharacterized protein 29.1 27 0.00092 23.2 1.9 23 64-86 24-46 (73)
154 1r69_A Repressor protein CI; g 29.0 27 0.00094 22.5 1.9 24 64-87 17-40 (69)
155 3iv1_A Tumor susceptibility ge 28.8 1.6E+02 0.0056 21.2 7.0 44 84-127 13-56 (78)
156 3hnw_A Uncharacterized protein 28.7 1.4E+02 0.0049 23.5 6.4 28 98-125 91-118 (138)
157 1r8e_A Multidrug-efflux transp 28.7 2.5E+02 0.0087 23.3 8.6 66 38-117 42-107 (278)
158 2pmy_A RAS and EF-hand domain- 28.6 39 0.0013 23.4 2.8 44 40-83 20-68 (91)
159 2wuj_A Septum site-determining 28.5 34 0.0012 23.0 2.3 34 90-123 21-54 (57)
160 2rgt_A Fusion of LIM/homeobox 28.3 1.1 3.9E-05 36.3 -6.3 29 33-61 135-163 (169)
161 3m9b_A Proteasome-associated A 28.3 76 0.0026 27.8 5.1 44 92-135 57-100 (251)
162 1y7y_A C.AHDI; helix-turn-heli 28.0 30 0.001 22.7 2.0 23 64-86 29-51 (74)
163 3b7h_A Prophage LP1 protein 11 28.0 28 0.00094 23.2 1.8 23 64-86 23-45 (78)
164 3qq6_A HTH-type transcriptiona 27.4 32 0.0011 23.6 2.1 21 64-84 26-46 (78)
165 3clo_A Transcriptional regulat 27.4 1.1E+02 0.0037 25.7 5.9 48 39-92 196-243 (258)
166 2wiu_B HTH-type transcriptiona 27.0 39 0.0013 23.0 2.5 23 64-86 28-50 (88)
167 3a5t_A Transcription factor MA 26.9 11 0.00038 29.0 -0.5 61 72-132 27-94 (107)
168 2q24_A Putative TETR family tr 26.9 33 0.0011 26.5 2.4 45 45-91 20-64 (194)
169 2kpj_A SOS-response transcript 26.8 31 0.001 24.3 2.0 23 64-86 25-47 (94)
170 1pdn_C Protein (PRD paired); p 26.7 1.1E+02 0.0039 21.7 5.3 41 39-84 16-56 (128)
171 1gu4_A CAAT/enhancer binding p 26.5 1.8E+02 0.006 20.8 6.0 31 101-131 34-64 (78)
172 2hxi_A Putative transcriptiona 26.3 49 0.0017 27.4 3.5 52 38-90 26-78 (241)
173 3kz3_A Repressor protein CI; f 25.5 33 0.0011 23.3 1.9 24 64-87 28-51 (80)
174 1nkp_A C-MYC, MYC proto-oncoge 25.0 1.8E+02 0.006 21.0 5.9 33 98-130 54-86 (88)
175 3bdn_A Lambda repressor; repre 24.9 34 0.0012 28.2 2.2 24 63-86 32-55 (236)
176 3t72_q RNA polymerase sigma fa 24.4 1.7E+02 0.0059 21.4 5.9 50 40-90 19-68 (99)
177 3m91_A Proteasome-associated A 24.4 1.6E+02 0.0054 19.5 6.3 35 95-129 15-49 (51)
178 3m48_A General control protein 24.3 1.3E+02 0.0043 18.3 4.0 21 103-123 7-27 (33)
179 1c07_A Protein (epidermal grow 23.9 74 0.0025 22.4 3.6 42 41-82 4-50 (95)
180 2ef8_A C.ECOT38IS, putative tr 23.7 39 0.0013 22.7 2.0 23 64-86 26-48 (84)
181 3gp4_A Transcriptional regulat 23.6 2.6E+02 0.0088 21.6 10.7 35 37-84 37-71 (142)
182 3hnw_A Uncharacterized protein 23.1 2.7E+02 0.0094 21.8 7.7 19 107-125 93-111 (138)
183 2k9q_A Uncharacterized protein 23.0 39 0.0013 22.7 1.8 23 64-86 18-40 (77)
184 2q0o_A Probable transcriptiona 22.5 1.8E+02 0.0061 23.8 6.3 46 39-90 174-219 (236)
185 3f6w_A XRE-family like protein 22.4 42 0.0014 22.7 1.9 23 64-86 30-52 (83)
186 1u78_A TC3 transposase, transp 22.1 1.3E+02 0.0044 22.0 4.9 45 39-87 59-105 (141)
187 2ict_A Antitoxin HIGA; helix-t 22.1 45 0.0015 23.3 2.1 23 64-86 24-46 (94)
188 2oxj_A Hybrid alpha/beta pepti 22.0 1.4E+02 0.0049 18.2 4.0 23 102-124 7-29 (34)
189 4dzn_A Coiled-coil peptide CC- 22.0 1.3E+02 0.0045 17.7 4.6 20 98-117 4-23 (33)
190 1k78_A Paired box protein PAX5 21.9 2.2E+02 0.0075 21.3 6.3 45 38-85 88-142 (149)
191 1rzs_A Antirepressor, regulato 21.7 46 0.0016 22.0 1.9 19 64-82 13-31 (61)
192 1dip_A Delta-sleep-inducing pe 21.4 63 0.0022 23.3 2.7 29 96-124 15-43 (78)
193 2hin_A GP39, repressor protein 21.3 74 0.0025 22.2 3.0 21 64-84 13-33 (71)
194 3trt_A Vimentin; cytoskeleton, 21.2 2.1E+02 0.0071 19.7 7.0 51 75-130 26-76 (77)
195 2kvr_A Ubiquitin carboxyl-term 21.2 27 0.00091 27.4 0.7 23 64-86 72-94 (130)
196 1k78_A Paired box protein PAX5 21.1 1.6E+02 0.0056 22.1 5.4 41 39-84 31-71 (149)
197 1l3l_A Transcriptional activat 20.8 1.6E+02 0.0056 24.1 5.7 47 38-90 171-217 (234)
198 3hh0_A Transcriptional regulat 20.5 3E+02 0.01 21.3 8.2 73 37-127 39-111 (146)
199 1nlw_A MAD protein, MAX dimeri 20.1 2.3E+02 0.008 20.0 5.6 27 100-126 51-77 (80)
200 3t76_A VANU, transcriptional r 20.1 79 0.0027 22.6 3.1 23 64-86 40-62 (88)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=136.41 Aligned_cols=63 Identities=32% Similarity=0.557 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+.+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 445567778899999999999999999999999999999999999999999999999999854
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=9.2e-20 Score=135.40 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+.+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 345577788899999999999999999999999999999999999999999999999999864
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=5.6e-19 Score=131.73 Aligned_cols=63 Identities=32% Similarity=0.558 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQL 94 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~ 94 (254)
...+++|++||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 345778888999999999999999999999999999999999999999999999999998753
No 4
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=129.08 Aligned_cols=62 Identities=31% Similarity=0.542 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577888899999999999999999999999999999999999999999999999999864
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=133.20 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+.++.|++||..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345567778899999999999999999999999999999999999999999999999999864
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=2.4e-19 Score=134.30 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFEL----GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
...+++|+.||.+|+.+||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345677788999999999999999 999999999999999999999999999999999875
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.9e-19 Score=129.95 Aligned_cols=62 Identities=29% Similarity=0.494 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34577788899999999999999999999999999999999999999999999999999854
No 8
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=5.8e-19 Score=128.38 Aligned_cols=61 Identities=38% Similarity=0.634 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3467788999999999999999999999999999999999999999999999999999864
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=4.2e-19 Score=126.61 Aligned_cols=59 Identities=36% Similarity=0.632 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
.++.|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46778889999999999999999999999999999999999999999999999999985
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=7.1e-19 Score=130.26 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLE 95 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~ 95 (254)
+.++.|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+....
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 346667789999999999999999999999999999999999999999999999999987644
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=130.98 Aligned_cols=62 Identities=24% Similarity=0.487 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34577888999999999999999999999999999999999999999999999999999864
No 12
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=5.8e-19 Score=131.83 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+.+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 344567778899999999999999999999999999999999999999999999999999865
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=2.4e-19 Score=127.39 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.++.|+.||.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 466778899999999999999999999999999999999999999999999999999853
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=1.4e-18 Score=128.66 Aligned_cols=63 Identities=35% Similarity=0.517 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQL 94 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~ 94 (254)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345677888999999999999999999999999999999999999999999999999998753
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=6.3e-19 Score=131.32 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.+++|++||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 44577888899999999999999999999999999999999999999999999999999864
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=127.99 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
...+++|++||.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34577788899999999999999999999999999999999999999999999999999854
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=9e-19 Score=122.61 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467788999999999999999999999999999999999999999999999999986
No 18
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=8.5e-19 Score=134.60 Aligned_cols=65 Identities=31% Similarity=0.555 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEK 96 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~ 96 (254)
.+.+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 34567778899999999999999999999999999999999999999999999999999976544
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-19 Score=127.85 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+...+++|++||.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 344577888899999999999999999999999999999999999999999999999999864
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=4.5e-19 Score=132.99 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFEL-----GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
...+++|+.||.+|+.+|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3456777889999999999 7999 999999999999999999999999999999999875
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-19 Score=128.47 Aligned_cols=63 Identities=32% Similarity=0.499 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 334577788899999999999999999999999999999999999999999999999999753
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=7.2e-19 Score=124.52 Aligned_cols=58 Identities=34% Similarity=0.580 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++.|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3667888999999999999999999999999999999999999999999999999986
No 23
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1e-18 Score=129.97 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+|++||.+|+.+||+.|..++||+..+|++||..+||+++||+|||||||+|+|+.+
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999865
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=2.3e-18 Score=124.67 Aligned_cols=59 Identities=32% Similarity=0.534 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.|++||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 56788899999999999999999999999999999999999999999999999999865
No 25
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.4e-18 Score=125.80 Aligned_cols=59 Identities=27% Similarity=0.504 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFEL-GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.++|++||.+|+.+||..|.. ++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 457888999999999999996 99999999999999999999999999999999999864
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=127.61 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999864
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=1.4e-18 Score=125.87 Aligned_cols=59 Identities=39% Similarity=0.691 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 56778899999999999999999999999999999999999999999999999999864
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.8e-18 Score=122.06 Aligned_cols=58 Identities=33% Similarity=0.494 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
++.|++||.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999999999999999999999999999999999999999874
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=8.3e-19 Score=126.86 Aligned_cols=60 Identities=22% Similarity=0.530 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.+++|++||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 467788899999999999999999999999999999999999999999999999999865
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=2.1e-18 Score=126.61 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3467788899999999999999999999999999999999999999999999999999854
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=129.97 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELG----NKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~----~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+++|+.||.+|+.+||.+|+.+ +||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 446677789999999999999999 9999999999999999999999999999999999854
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=125.51 Aligned_cols=60 Identities=30% Similarity=0.502 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.++.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+++|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 466788899999999999999999999999999999999999999999999999999864
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=2.4e-18 Score=124.49 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.++.|++||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 356778899999999999999999999999999999999999999999999999999865
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=1.5e-18 Score=129.84 Aligned_cols=61 Identities=36% Similarity=0.541 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+++|++||.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3467788899999999999999999999999999999999999999999999999999864
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=3.7e-18 Score=125.18 Aligned_cols=59 Identities=25% Similarity=0.463 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFEL-GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+++|++||.+|+.+||..|.. ++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999864
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=119.49 Aligned_cols=56 Identities=36% Similarity=0.499 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
++.|++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 56778899999999999999999999999999999999999999999999999975
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=2e-18 Score=130.85 Aligned_cols=62 Identities=37% Similarity=0.678 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34577788899999999999999999999999999999999999999999999999999853
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=124.19 Aligned_cols=61 Identities=31% Similarity=0.466 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLE 95 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~ 95 (254)
+++|++||.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5678889999999999999999999999999999999999999999999999999986543
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=119.26 Aligned_cols=54 Identities=33% Similarity=0.618 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
+.||.+|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 569999999999999999999999999999999999999999999999999985
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=124.82 Aligned_cols=62 Identities=27% Similarity=0.515 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.++.|++||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999864
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=2.6e-18 Score=121.22 Aligned_cols=57 Identities=32% Similarity=0.584 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.|++||.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999864
No 42
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=132.35 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLE 95 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~ 95 (254)
..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345677889999999999999999999999999999999999999999999999999997644
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=3e-18 Score=121.05 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
+.+++|++||.+|+.+||..|..++||+..++.+||..|||++.||++||||||+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3466777899999999999999999999999999999999999999999999999975
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.9e-18 Score=131.05 Aligned_cols=63 Identities=30% Similarity=0.546 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQL 94 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~ 94 (254)
...+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 345677888999999999999999999999999999999999999999999999999998753
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8.6e-18 Score=123.00 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQL 94 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~ 94 (254)
+..+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345677788999999999999986 999999999999999999999999999999999998653
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=124.65 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.+.|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44578899999999999999999999999999999999999999999999999999854
No 47
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=7.1e-18 Score=128.98 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 36 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 36 rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.++||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3455899999999999999999999999999999999999999999999999999853
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-18 Score=123.16 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++.|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 56788899999999999999999999999999999999999999999999999999864
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.9e-18 Score=125.97 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSF-ELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F-~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.++|++++.+|+.+||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4567789999999999999 9999999999999999999999999999999999999753
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=9.3e-18 Score=122.80 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSF---ELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLE 95 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~ 95 (254)
+++|++|+..|+.+||..| ..++||+..++.+||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5778889999999999999 999999999999999999999999999999999999986544
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=117.45 Aligned_cols=56 Identities=30% Similarity=0.386 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 37 KKKRLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
+|++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999863
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.3e-17 Score=126.79 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALG---------------LQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~Lg---------------L~~rqV~vWFQNRRak~Kr~~ 93 (254)
+.+.++.|++|+..|+.+||..|+.++||+..+|++||..|+ |++.+|++||||||+|+|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 344567778899999999999999999999999999999999 999999999999999999865
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=2.2e-17 Score=124.55 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSF---ELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLE 95 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~ 95 (254)
+++|++|+.+|+.+||.+| ..++||+..++.+||..|||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5778889999999999999 899999999999999999999999999999999999987543
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1e-17 Score=119.57 Aligned_cols=58 Identities=26% Similarity=0.403 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSF---ELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.+++|++|+.+|+.+||.+| ..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778889999999999999 99999999999999999999999999999999999886
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=123.97 Aligned_cols=58 Identities=29% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 36 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 36 rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
++++++|.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4555699999999999999999999999999999999999999999999999998753
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=122.24 Aligned_cols=62 Identities=29% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
...+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 345677888999999999999987 59999999999999999999999999999999998754
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=2e-17 Score=124.30 Aligned_cols=62 Identities=27% Similarity=0.330 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHH
Q 041877 35 GEKKKRLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEK 96 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~ 96 (254)
+++|++|+.+|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+.....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 456677999999999999999 99999999999999999999999999999999999875443
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=5.5e-17 Score=122.67 Aligned_cols=59 Identities=29% Similarity=0.345 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
..+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34666778999999999999999 999999999999999999999999999999999873
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=117.24 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 41 LNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
.|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999864
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=3.6e-17 Score=135.16 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
.+.+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4456677789999999999999999999999999999999999999999999999999975
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=120.19 Aligned_cols=55 Identities=40% Similarity=0.596 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQL 94 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~ 94 (254)
.+|..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+.
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999998653
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=6.1e-17 Score=135.54 Aligned_cols=61 Identities=31% Similarity=0.419 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
.+.+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3556778889999999999999999999999999999999999999999999999999974
No 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.3e-17 Score=117.48 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=46.9
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 43 LEQVKALEKSF-ELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 43 ~~Ql~~LE~~F-~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
+.|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 579999999999999999999999999999999999864
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=7.5e-17 Score=135.75 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
..+.+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 344566777899999999999999999999999999999999999999999999999999865
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=132.10 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.+.+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 455667788999999999999999999999999999999999999999999999999986
No 66
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=121.56 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhHHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARAL---------------------GLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~L---------------------gL~~rqV~vWFQNRRak~Kr 91 (254)
+.++.|+.|+..|+.+||..|+.++||+..+|++||..| +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 456777789999999999999999999999999999999 79999999999999999998
Q ss_pred HH
Q 041877 92 KQ 93 (254)
Q Consensus 92 ~~ 93 (254)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=113.91 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
..+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|.++.
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 45689999999999999999999999999999999999999999999987753
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=4e-16 Score=113.39 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFEL-GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
..+|.|+.|+.+|+..|+.+|+. ++||+...|..||.+|||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 45677888999999999999999 99999999999999999999999999999996543
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=3.6e-16 Score=130.32 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
++.+++|++|+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3456678889999999999999999999999999999999999999999999999999974
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.61 E-value=2.7e-16 Score=122.32 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARA------------------LG---LQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~------------------Lg---L~~rqV~vWFQNRRak~K 90 (254)
.+.++.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|++||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 345666778999999999999999999999999999999 88 999999999999999998
Q ss_pred HHH
Q 041877 91 TKQ 93 (254)
Q Consensus 91 r~~ 93 (254)
+++
T Consensus 87 ~k~ 89 (99)
T 1lfb_A 87 FRH 89 (99)
T ss_dssp CCC
T ss_pred Hhc
Confidence 765
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=6.7e-16 Score=111.69 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHHHH
Q 041877 40 RLNLEQVKALEKSFE---LGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDY 98 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~---~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~~~ 98 (254)
+|+.+|+.+|+.+|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 799999999999999 99999999999999999999999999999999999987665543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=5.6e-16 Score=129.74 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 31 GSQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 31 ~~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+...+++|++||..|+.+||..|+.++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 445577788899999999999999999999999999999999999999999999999999764
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=99.32 Aligned_cols=46 Identities=17% Similarity=0.452 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHH
Q 041877 43 LEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRAR 88 (254)
Q Consensus 43 ~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak 88 (254)
.+|+.+||.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=102.24 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 40 RLNLEQVKALEKSFEL---GNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
-|+.+++.+|+.+|.. ++||+..+|.+||..+||+++||++||+|+|.|+++..
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4889999999999987 99999999999999999999999999999999998754
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.39 E-value=9e-14 Score=120.05 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhHHHHH
Q 041877 32 SQVGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALG---------------------LQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 32 ~~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~Lg---------------------L~~rqV~vWFQNRRak~K 90 (254)
.+.+|.|+.|+..|+.+||+.|+.++||+...|++||..|+ |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 34466677799999999999999999999999999999999 999999999999999976
Q ss_pred H
Q 041877 91 T 91 (254)
Q Consensus 91 r 91 (254)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.30 E-value=9.5e-13 Score=121.44 Aligned_cols=55 Identities=27% Similarity=0.491 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 36 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 36 rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
+.++.++..|+..||+.|+.++||+..+|.+||++|||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3455699999999999999999999999999999999999999999999999976
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.27 E-value=3.5e-12 Score=111.92 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhHHHH
Q 041877 34 VGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALG---------------------LQPRQIAIWFQNRRARW 89 (254)
Q Consensus 34 ~~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~Lg---------------------L~~rqV~vWFQNRRak~ 89 (254)
.+|.|+.|+..|+.+||..|..++||+..+|++||..|| |++.+|++||||||++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 445555689999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.71 E-value=4.7e-10 Score=72.16 Aligned_cols=22 Identities=55% Similarity=1.149 Sum_probs=18.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH
Q 041877 76 RQIAIWFQNRRARWKTKQLEKD 97 (254)
Q Consensus 76 rqV~vWFQNRRak~Kr~~~~~~ 97 (254)
+||+|||||||+|||+.+.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999875543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.62 E-value=0.03 Score=40.39 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 46 VKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 46 l~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
...|+.+|...+.+.......|+.+..|+-.||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999954
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.94 E-value=0.43 Score=34.95 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 38 KKRLNLEQVKALEKSFELG-NKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
|++|+.++....-..+... .. ...++|+.+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888765554444322 22 3568999999999999999754
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.20 E-value=2.6 Score=30.71 Aligned_cols=45 Identities=29% Similarity=0.295 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccC
Q 041877 86 RARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKNKD 133 (254)
Q Consensus 86 Rak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 133 (254)
|.+.|++.. ...+....+.|..+|..|+.+...|..|+..|+.-.
T Consensus 29 rSR~krk~r---~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMR---NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 344667788899999999999999999999888754
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=84.42 E-value=2.3 Score=32.33 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHH
Q 041877 36 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRAR 88 (254)
Q Consensus 36 rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak 88 (254)
++|++||.++...+-..+....... ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4567899998877777765555443 2368999999999999999876653
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.92 E-value=3 Score=31.07 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 041877 99 EVLKKQFEALKADNDSLQAQNKKLHAELVSLKNK 132 (254)
Q Consensus 99 ~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 132 (254)
..+....+.|..+|..|+.+...|..|+..|+.-
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888877764
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.37 E-value=1.5 Score=29.31 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
+|++|+.+....+..++... ........++|+.+|+++..|..|.+
T Consensus 2 ~r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 34579999776665555433 22112256899999999999999964
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.65 E-value=7.7 Score=26.79 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
.....+..+.+.|..+|..|..+...|..|+..|+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888888877764
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.09 E-value=9.3 Score=25.99 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
.....+....+.+..+|..|..+...|..|+..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888888877765
No 87
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=76.78 E-value=6.7 Score=27.95 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 041877 94 LEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSL 129 (254)
Q Consensus 94 ~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 129 (254)
++.....+......+..+|..|+.++..|..|+..+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444555555555555555555443
No 88
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=76.13 E-value=7 Score=27.98 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 041877 35 GEKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
++.+++|+.++....-..+.. .. ...+||+.+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 344567999876554455542 22 256889999999999999963
No 89
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.48 E-value=10 Score=25.94 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKNK 132 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 132 (254)
.....+....+.|..+|..|..+...|..++..|+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888988888888888887754
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.24 E-value=5.3 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
..++.++...+...+... + ...++|+.+|++..-|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 357777765555555432 2 3568999999999999999854
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.19 E-value=6.8 Score=27.91 Aligned_cols=50 Identities=28% Similarity=0.328 Sum_probs=37.1
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 82 FQNRRARWK-TKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 82 FQNRRak~K-r~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
.|||-+.-. +...+..+..|..+...+...+..+..+|..|..++..|..
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356554433 44456677788888889998899999999999988887754
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.69 E-value=13 Score=25.57 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
.....+..+.+.|..+|..|..+...|..++..|+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888887777664
No 93
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.18 E-value=2.4 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
.++.++...+...+... ....+||+.+|++..-|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 46666655555555433 2356899999999999999986543
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.12 E-value=23 Score=26.37 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=31.7
Q ss_pred CCChhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 72 GLQPRQIAIWFQNRRAR-------WKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 72 gL~~rqV~vWFQNRRak-------~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
||+..+|..|=|-||.- ..+.........|..+...|..+...|..|+..+..|...+|.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766555532 1122233334445555555555555555555555555555544
No 95
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.26 E-value=14 Score=26.41 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 41 LNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
++..+..+|...|.... .-.+||..||+++..|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67777777776553322 35689999999999999887655544443
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.65 E-value=16 Score=24.47 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAEL 126 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 126 (254)
.+++.++.+.+.|+.....|..+++.|.+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=59.24 E-value=40 Score=24.90 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=39.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 041877 76 RQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKNK 132 (254)
Q Consensus 76 rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 132 (254)
.++..|-+......+. .-+..+..++.+++.+..++..+..+.+.|.+++..+|.+
T Consensus 37 ~~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 37 AELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455554433333222 2356677899999999999999999999999998888764
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.64 E-value=29 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.079 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHH
Q 041877 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARW 89 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~ 89 (254)
...+|..+..+|.-.++-- .-.+||..||+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3469999999998866432 237899999999999998876544443
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.58 E-value=11 Score=24.96 Aligned_cols=46 Identities=22% Similarity=0.091 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
.++..+..+|...|... ..-.++|..+|+++..|+.+...-|.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888888776332 23568999999999999988765444443
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.18 E-value=16 Score=26.46 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++..+..+|..+++-.. -.++|..||+++..|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 589999999988643322 4689999999999999887655555443
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.78 E-value=27 Score=23.16 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
..++..+..+|..+++ .+ .-.++|..+|+++..|..+...-+.+.+
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4589999999988532 22 3568999999999999988765454444
No 102
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.66 E-value=42 Score=22.57 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 041877 85 RRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELV 127 (254)
Q Consensus 85 RRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 127 (254)
.|-+.+...++.....+...+..|..+...|+.|+..|...++
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555556677777788888888888888888888888776554
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.00 E-value=36 Score=24.91 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 041877 115 LQAQNKKLHAELV 127 (254)
Q Consensus 115 l~~e~~~l~~e~~ 127 (254)
+..+|.+|+.|..
T Consensus 53 L~~en~qLk~E~~ 65 (81)
T 2jee_A 53 LERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444544433
No 104
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=54.55 E-value=27 Score=24.41 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
..++..+..+|..+++ . ..-.++|..+|+++..|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3589999999988542 2 245689999999999999887655555444
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.86 E-value=16 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccC
Q 041877 102 KKQFEALKADNDSLQAQNKKLHAELVSLKNKD 133 (254)
Q Consensus 102 k~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 133 (254)
...+++|+.|+..|+.++..|.+++..++.+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888887654
No 106
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=52.65 E-value=62 Score=24.17 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
.++..+..+|...|.... .-.++|..+|+++..|+.+...-|.+.|..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467777777777653332 346899999999999999887666665543
No 107
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.70 E-value=31 Score=25.92 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
.++..+..+|. .| .....-.++|..||+++..|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35555666665 32 22334678999999999999988764444444
No 108
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=50.48 E-value=55 Score=24.58 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
.+++.+..++...|.... .-.++|..+|+++..|+.|...-|.+.+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888887654332 346899999999999999987666665543
No 109
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.38 E-value=37 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 041877 98 YEVLKKQFEALKADNDSLQAQNKKLH 123 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~e~~~l~ 123 (254)
...|..+.+.|..+|..|..+...|.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444443
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.71 E-value=59 Score=22.18 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 041877 86 RARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELV 127 (254)
Q Consensus 86 Rak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 127 (254)
|.+.+...++...+.++.....|..+...|+.|+..|..-+.
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445566777778888888888888888888877766544
No 111
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=49.53 E-value=23 Score=27.63 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHH----Hh--CCChhhhhhhhhhh
Q 041877 35 GEKKKRLNLEQVKALEKSF-ELGNKLEPERKLQLAR----AL--GLQPRQIAIWFQNR 85 (254)
Q Consensus 35 ~rkR~r~t~~Ql~~LE~~F-~~~~yp~~~~r~~LA~----~L--gL~~rqV~vWFQNR 85 (254)
+++|+++|.+|...|-.++ +.++..... +||+ .+ +++...|..|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4677889999999999998 666665443 4566 77 77888888887653
No 112
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=48.27 E-value=29 Score=24.57 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++..+..+|..+++-. .-.++|..||+++..|+.+..+-+.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 48999999998854322 23478999999999999988765555544
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.74 E-value=30 Score=23.35 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 41 LNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
++..+..+|..+|. .+ .-.++|..+|+++..|+.+...=+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 67778888877432 22 24589999999999999887665555544
No 114
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=47.43 E-value=27 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHH-HhhcC-CCCC-HHHHHHHHHHhCCChhhhhhhhh
Q 041877 38 KKRLNLEQVKALEK-SFELG-NKLE-PERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 38 R~r~t~~Ql~~LE~-~F~~~-~yp~-~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
+++|+.++....-. +.... .+.+ .....++|+.+|+++..|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 45799887654433 33321 1222 24567899999999999999964
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.96 E-value=36 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHAELVS 128 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~ 128 (254)
..+..++.+++.|..|++.|..+++.|..++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999888865
No 116
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.12 E-value=23 Score=23.64 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
.++..+..+|...|....+- ...-.++|..+|+++..|+.+...-+.+.|
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888889998888431111 122468999999999999988754444443
No 117
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=44.62 E-value=40 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCChh
Q 041877 36 EKKKRLNLEQVKALEKSFEL-----GNKLEPERKLQLARALGLQPR 76 (254)
Q Consensus 36 rkR~r~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL~~r 76 (254)
++|..+|.+|+..|...|.. ..+.+..+...+.+.||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45667999999999999974 457888888888888887553
No 118
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=44.19 E-value=50 Score=22.17 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
.++..+..+|...|..... ....-.++|..+|+++..|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888852100 0122458999999999999998755444444
No 119
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.18 E-value=61 Score=25.30 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=27.9
Q ss_pred CChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 041877 73 LQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSL 129 (254)
Q Consensus 73 L~~rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 129 (254)
|.....+.|=+|+-..--+..++++......+++.|..|...|..+.....+++..|
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777755544444444433333344444444444444444444444433
No 120
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=41.33 E-value=27 Score=28.25 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++..+..+|...|... ..-.+||..||+++..|+.+...-|.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 36777777777766322 235689999999999999887655554443
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.04 E-value=54 Score=22.13 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 041877 91 TKQLEKDYEVLKKQFEALKADNDSLQAQNKKLH 123 (254)
Q Consensus 91 r~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~ 123 (254)
...++...+.+..+...|..+...|+.++..|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555444443
No 122
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.97 E-value=58 Score=23.34 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhH
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
....||..+..+|.-.++ .+ ...+||..||++++.|+....+=+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344699999999988762 22 367899999999999998765433
No 123
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.31 E-value=95 Score=22.78 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 041877 94 LEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLK 130 (254)
Q Consensus 94 ~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 130 (254)
.......|..+...|+.+...|..|...|..-+..+-
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4444566777777777777777777777776666543
No 124
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.71 E-value=57 Score=23.56 Aligned_cols=47 Identities=11% Similarity=0.284 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCC--Chhhhhhhhh
Q 041877 37 KKKRLNLEQVKALEKSFEL-----GNKLEPERKLQLARALGL--QPRQIAIWFQ 83 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL--~~rqV~vWFQ 83 (254)
+...++.+++..|...|.. +.+.+..+-..+.+.+|+ ++.+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3446899999999999974 457889988888888884 5666766663
No 125
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.44 E-value=52 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
+.++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 468888777776666533 2 3567899999999999999964
No 126
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.25 E-value=69 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=9.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 041877 105 FEALKADNDSLQAQNKKLHAEL 126 (254)
Q Consensus 105 ~~~l~~e~~~l~~e~~~l~~e~ 126 (254)
+..|..+...|..||..|..|.
T Consensus 67 v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 127
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.69 E-value=17 Score=23.23 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 128
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.57 E-value=90 Score=21.85 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhh
Q 041877 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIA 79 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~ 79 (254)
+...|.++...||+....-+.-.+.+-..||..+|=+..+|+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~ 49 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVT 49 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHH
Confidence 446999999999999876654344556778998885555554
No 129
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.40 E-value=1.2e+02 Score=22.01 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHhhhc
Q 041877 94 LEKDYEVLKKQFEALKADNDSLQAQNKK-------LHAELVSLKN 131 (254)
Q Consensus 94 ~~~~~~~lk~~~~~l~~e~~~l~~e~~~-------l~~e~~~lk~ 131 (254)
.-..+..++.+++.|+.+|..+..++.. |..++..|+.
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444555555555555555554444 6666666665
No 130
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.56 E-value=19 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhHH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRRA 87 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRRa 87 (254)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 568999999999999999987553
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.16 E-value=64 Score=22.55 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++..+..+|...|..... ....-.++|..+|+++..|+.+...-+.+.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3788888899888752100 11235688999999999999987655555443
No 132
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.09 E-value=20 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998765
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.94 E-value=86 Score=20.93 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 041877 98 YEVLKKQFEALKADNDSLQAQN 119 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~e~ 119 (254)
|+.+-.+.+.|+.||..|+.|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 4455566677777777766654
No 134
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.71 E-value=1.4e+02 Score=22.11 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=38.3
Q ss_pred hhhhhHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 041877 81 WFQNRRARWK--TKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLK 130 (254)
Q Consensus 81 WFQNRRak~K--r~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 130 (254)
+-||-|.|-. +..++.+...+..+.+.|+.|+..+..|.+.++.....|.
T Consensus 38 yAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 38 YAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444433 3557778888999999999999999999999988887764
No 135
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.16 E-value=1.7e+02 Score=22.86 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQ 116 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~ 116 (254)
..+.|+.+++..|.. ....+.+|++...|+..+...+.... ......+.+..+.+.+..+-..++
T Consensus 51 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 51 GDRIFNEEALKYLEM-------------ILCLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp CCEEBCHHHHHHHHH-------------HHHHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888887743 23347788998888888875432211 112223445555555555555555
Q ss_pred HHHHHHHHHHHhhhc
Q 041877 117 AQNKKLHAELVSLKN 131 (254)
Q Consensus 117 ~e~~~l~~e~~~lk~ 131 (254)
.....|...+..++.
T Consensus 116 ~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 116 KNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 136
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.01 E-value=1.2e+02 Score=23.27 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
+.++.++...+-..+... + ...++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888776666666533 2 3457899999999999999864
No 137
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=34.00 E-value=49 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 041877 43 LEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 43 ~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
.++...+...+.. .+ ...+||+.+|++..-|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555555532 22 356899999999999999874
No 138
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.63 E-value=51 Score=25.72 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 41 LNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
++..+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666554322 224689999999999999987655554443
No 139
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=33.29 E-value=21 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhHH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRRA 87 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRRa 87 (254)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 568999999999999999987665
No 140
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.00 E-value=22 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 141
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=32.96 E-value=20 Score=27.89 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 46 VKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 46 l~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
+..+.-.|+.++||.+.=- +|- =+|||.+||..+
T Consensus 15 vRiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQ 48 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQ 48 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHH
Confidence 4556667999999976411 111 158999999875
No 142
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=32.90 E-value=40 Score=24.09 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHH
Q 041877 45 QVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQ 93 (254)
Q Consensus 45 Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~ 93 (254)
-+..+.-.|+.++||.++--.+ | =.|||.+|+..+
T Consensus 17 ~vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQ 51 (72)
T 3lph_A 17 AVRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQ 51 (72)
T ss_dssp HHHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHH
Confidence 3456667799999998542111 1 158999998865
No 143
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.81 E-value=61 Score=18.38 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=10.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHhh
Q 041877 108 LKADNDSLQAQNKKLHAELVSL 129 (254)
Q Consensus 108 l~~e~~~l~~e~~~l~~e~~~l 129 (254)
++.|...++.|...|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444445555555555555443
No 144
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.64 E-value=1.2e+02 Score=20.70 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccC
Q 041877 101 LKKQFEALKADNDSLQAQNKKLHAELVSLKNKD 133 (254)
Q Consensus 101 lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 133 (254)
-+...+.|......|..+|..|..++..|+...
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888889999999999999999887754
No 145
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=32.18 E-value=19 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 45 QVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 45 Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
-+......|....|-. ....+||+..|++..-+-.+|.+|-.-..
T Consensus 36 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~ 80 (218)
T 3dcf_A 36 IIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDVLF 80 (218)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3445666688877653 34568899999999999999998766443
No 146
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.88 E-value=1.2e+02 Score=20.49 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 041877 86 RARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAEL 126 (254)
Q Consensus 86 Rak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 126 (254)
|.+.+...++.+.+.+......|..+...|+.+...|...+
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666677777777777777777666665544
No 147
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.64 E-value=1.1e+02 Score=21.61 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 041877 98 YEVLKKQFEALKADNDSLQAQNKKLHAELVSL 129 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 129 (254)
+..|+.+.+.+..+.+.|+.++..|.+.+..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666776666666554
No 148
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.33 E-value=34 Score=21.88 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 65 LQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 65 ~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
.++|..+|+++..|+.+..+=+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 589999999999999887655554443
No 149
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.21 E-value=24 Score=23.31 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhHH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRRA 87 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRRa 87 (254)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987553
No 150
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.20 E-value=59 Score=22.70 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 041877 41 LNLEQVKALEKSFEL-----GNKLEPERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
++.++...++..|.. ..+.+..+-..+.+.+|++...|...|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678899999999974 3457777777777788888777665553
No 151
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.20 E-value=25 Score=23.28 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56899999999999999998765
No 152
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.52 E-value=39 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 153
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.15 E-value=27 Score=23.20 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 154
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.02 E-value=27 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhHH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRRA 87 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRRa 87 (254)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987664
No 155
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.76 E-value=1.6e+02 Score=21.16 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 041877 84 NRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELV 127 (254)
Q Consensus 84 NRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 127 (254)
+||.+.+-.+...+.+++++--+.|+.....|..-..+|+.|..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~ 56 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45666666666667777777766666665555444444444433
No 156
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.73 E-value=1.4e+02 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 041877 98 YEVLKKQFEALKADNDSLQAQNKKLHAE 125 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e 125 (254)
...+|.+...+......+..++..|+.+
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 157
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=28.69 E-value=2.5e+02 Score=23.32 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041877 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQA 117 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~ 117 (254)
.|.|+.+++..|. .....+.+|++-.+|+..+.++ .......+....+.+..+.+.+...-..++.
T Consensus 42 ~R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~-~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 42 YRYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE-MEELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp CEEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888777763 3334588999999999988766 3333334444444455555555444444433
No 158
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=28.61 E-value=39 Score=23.37 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 041877 40 RLNLEQVKALEKSFEL-----GNKLEPERKLQLARALGLQPRQIAIWFQ 83 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL~~rqV~vWFQ 83 (254)
.++.+++..|...|.. ..+.+..+...+.+.+|++..+|..+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4788899999999863 4467888888888888988887777764
No 159
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.46 E-value=34 Score=22.97 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 041877 90 KTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLH 123 (254)
Q Consensus 90 Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~ 123 (254)
....-..+...+-..++.+..++..|+.++..|+
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554443
No 160
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.35 E-value=1.1 Score=36.26 Aligned_cols=29 Identities=0% Similarity=-0.155 Sum_probs=20.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCH
Q 041877 33 QVGEKKKRLNLEQVKALEKSFELGNKLEP 61 (254)
Q Consensus 33 ~~~rkR~r~t~~Ql~~LE~~F~~~~yp~~ 61 (254)
..++.|+.|+..|+++|+..|+.++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 34555667999999999999999999863
No 161
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.30 E-value=76 Score=27.85 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCC
Q 041877 92 KQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKNKDSN 135 (254)
Q Consensus 92 ~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~~~ 135 (254)
+.+......+..+++.|..+-..++.|..+|+.|+..|+..-..
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~ 100 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG 100 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 34556667777888888888888888899999999888775443
No 162
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=28.03 E-value=30 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999987754
No 163
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.98 E-value=28 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998766
No 164
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.40 E-value=32 Score=23.56 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.8
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 041877 64 KLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQN 84 (254)
..+||+.+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456888888888888888876
No 165
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.39 E-value=1.1e+02 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTK 92 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~ 92 (254)
..++..+..+|.-.+ ..+ .-.++|..||+++.-|+....+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468999999888864 222 356899999999999999877655555543
No 166
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.96 E-value=39 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999997744
No 167
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.94 E-value=11 Score=29.04 Aligned_cols=61 Identities=28% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCChhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 041877 72 GLQPRQIAIWFQNRRAR-------WKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLKNK 132 (254)
Q Consensus 72 gL~~rqV~vWFQNRRak-------~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 132 (254)
||++.+|...=+-||.- -.+......+..|..+...|..+...|..|+..+..|+..+|..
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766665554333321 11222233344444444445556666666666666666665554
No 168
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=26.86 E-value=33 Score=26.51 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHH
Q 041877 45 QVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKT 91 (254)
Q Consensus 45 Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr 91 (254)
-+..-...|....| . .....||+..|++..-|-..|.+|-.-...
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~~ 64 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIEA 64 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHHH
Confidence 45566677888888 6 788899999999999999999987665443
No 169
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.81 E-value=31 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.712 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56899999999999999998754
No 170
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.65 E-value=1.1e+02 Score=21.71 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
+.++.++...+-..+.. .+ ...++|+.+|++...|..|++.
T Consensus 16 ~~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 35888876666666653 22 2457899999999999999864
No 171
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.50 E-value=1.8e+02 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 041877 101 LKKQFEALKADNDSLQAQNKKLHAELVSLKN 131 (254)
Q Consensus 101 lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 131 (254)
.+.....+......|..+|..|..++..|+.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666666666554
No 172
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=26.26 E-value=49 Score=27.45 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=35.9
Q ss_pred CCCCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 38 KKRLNLEQ-VKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 38 R~r~t~~Q-l~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
|+..+.++ +..-...|....|-. ....+||+.+|++..-|-..|.||-.-..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 33466664 445566677776644 34557899999999999999998765443
No 173
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.47 E-value=33 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhHH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRRA 87 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRRa 87 (254)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999987654
No 174
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.99 E-value=1.8e+02 Score=21.01 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 041877 98 YEVLKKQFEALKADNDSLQAQNKKLHAELVSLK 130 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 130 (254)
+..|+.+...+..+.+.++.++..|..++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666677777777777777665
No 175
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=24.94 E-value=34 Score=28.18 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCChhhhhhhhhhhH
Q 041877 63 RKLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 63 ~r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456899999999999999997754
No 176
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.44 E-value=1.7e+02 Score=21.38 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 40 RLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 40 r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
.++..+..++...|....+ ....-.++|..+|++...|+.....-+.+.|
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3677788888877753211 1123568899999999999887654444433
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.42 E-value=1.6e+02 Score=19.47 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 041877 95 EKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSL 129 (254)
Q Consensus 95 ~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 129 (254)
......+..+++.|...-...+.+...|.+++..|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555544444455555555555443
No 178
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.25 E-value=1.3e+02 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=10.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 041877 103 KQFEALKADNDSLQAQNKKLH 123 (254)
Q Consensus 103 ~~~~~l~~e~~~l~~e~~~l~ 123 (254)
.+.+.|..+|..|+.|..+|+
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 344445555555555444444
No 179
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.93 E-value=74 Score=22.38 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCChhhhhhhh
Q 041877 41 LNLEQVKALEKSFEL-----GNKLEPERKLQLARALGLQPRQIAIWF 82 (254)
Q Consensus 41 ~t~~Ql~~LE~~F~~-----~~yp~~~~r~~LA~~LgL~~rqV~vWF 82 (254)
++.++...|+..|.. ..+.+..+-..+.+.+|++...|..+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 567788889998863 346777777777777888777766555
No 180
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=23.73 E-value=39 Score=22.71 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 181
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.61 E-value=2.6e+02 Score=21.63 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
..+.|+.+++..|... ...+.+|++...|+..+..
T Consensus 37 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 37 GVRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp SCBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHH
Confidence 4567999999988432 2347788888888777653
No 182
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.06 E-value=2.7e+02 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=6.8
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 041877 107 ALKADNDSLQAQNKKLHAE 125 (254)
Q Consensus 107 ~l~~e~~~l~~e~~~l~~e 125 (254)
.++.+...++.+.+.+..+
T Consensus 93 ~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 183
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.96 E-value=39 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987754
No 184
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=22.52 E-value=1.8e+02 Score=23.85 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
..+|..+..+|.-.++-. .-.++|..||++++-|+....+-+.|..
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 358888888887654222 2468899999999999988776555544
No 185
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=22.38 E-value=42 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 186
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.10 E-value=1.3e+02 Score=22.05 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhHH
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALG--LQPRQIAIWFQNRRA 87 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~Lg--L~~rqV~vWFQNRRa 87 (254)
+.++.++...+... ...+..+. .+||..+| ++...|..|+....-
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 35888887777666 44444443 46788888 788999999865443
No 187
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.08 E-value=45 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 188
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.02 E-value=1.4e+02 Score=18.15 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 041877 102 KKQFEALKADNDSLQAQNKKLHA 124 (254)
Q Consensus 102 k~~~~~l~~e~~~l~~e~~~l~~ 124 (254)
....+.|..++..|+.|+.+|++
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33445555555555555555543
No 189
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.97 E-value=1.3e+02 Score=17.71 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 041877 98 YEVLKKQFEALKADNDSLQA 117 (254)
Q Consensus 98 ~~~lk~~~~~l~~e~~~l~~ 117 (254)
+..+|+++.+++.|-..++-
T Consensus 4 iaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444433
No 190
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.92 E-value=2.2e+02 Score=21.31 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHh--------C--CChhhhhhhhhhh
Q 041877 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARAL--------G--LQPRQIAIWFQNR 85 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~L--------g--L~~rqV~vWFQNR 85 (254)
++.++.++...+......++..+.. +|+..| | ++...|..|....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 4468888888888888777665544 344444 5 6788888887543
No 191
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.69 E-value=46 Score=21.97 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhhhhhhh
Q 041877 64 KLQLARALGLQPRQIAIWF 82 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWF 82 (254)
..+||+.||++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 192
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.42 E-value=63 Score=23.25 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 041877 96 KDYEVLKKQFEALKADNDSLQAQNKKLHA 124 (254)
Q Consensus 96 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~ 124 (254)
++.+.||.++..|...+..|+.||.-|+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888777777766654
No 193
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=21.30 E-value=74 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 041877 64 KLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQN 84 (254)
..+||+.||++..-|--|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 194
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.22 E-value=2.1e+02 Score=19.66 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=26.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 041877 75 PRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELVSLK 130 (254)
Q Consensus 75 ~rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 130 (254)
...+..||+.+-.-.... .... .......+.+-..++.....|..|+..+|
T Consensus 26 r~EaE~~y~~k~eel~~~-~~~~----~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSEA-ANRN----NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456778998654432221 1111 11223334455556666677777777665
No 195
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.16 E-value=27 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
...+|+.+|+++.+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999985444
No 196
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.07 E-value=1.6e+02 Score=22.08 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 041877 39 KRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQN 84 (254)
Q Consensus 39 ~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQN 84 (254)
+.++.++...+-..+.. .+ ...++|+.+|++...|..|++.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 46888877666666643 22 2467899999999999999864
No 197
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.84 E-value=1.6e+02 Score=24.07 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHH
Q 041877 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90 (254)
Q Consensus 38 R~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~K 90 (254)
...+|..+..+|.-.++ . ..-.++|..||++++-|+....+-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34588888888866432 1 23568899999999999987765554433
No 198
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.52 E-value=3e+02 Score=21.31 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041877 37 KKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQ 116 (254)
Q Consensus 37 kR~r~t~~Ql~~LE~~F~~~~yp~~~~r~~LA~~LgL~~rqV~vWFQNRRak~Kr~~~~~~~~~lk~~~~~l~~e~~~l~ 116 (254)
..+.|+.+++..|.. ....+.+|++...|+..+...... .....+.+..+.+.+..+-..++
T Consensus 39 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~~~~~-----~~~~~~~L~~q~~~L~~~i~~l~ 100 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQ-------------IQSFKHLGFSLGEIQNIILQRDIE-----TEVFLRQMHFQREVLLAEQERIA 100 (146)
T ss_dssp SCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTSSEEE-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHccCCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456699999888843 223467888888888887654211 11122233344444444444444
Q ss_pred HHHHHHHHHHH
Q 041877 117 AQNKKLHAELV 127 (254)
Q Consensus 117 ~e~~~l~~e~~ 127 (254)
.....|..-+.
T Consensus 101 ~~l~~l~~~i~ 111 (146)
T 3hh0_A 101 KVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 199
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.12 E-value=2.3e+02 Score=20.00 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 041877 100 VLKKQFEALKADNDSLQAQNKKLHAEL 126 (254)
Q Consensus 100 ~lk~~~~~l~~e~~~l~~e~~~l~~e~ 126 (254)
.++.....+..+.+.|+.++..|..++
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 200
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.07 E-value=79 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhH
Q 041877 64 KLQLARALGLQPRQIAIWFQNRR 86 (254)
Q Consensus 64 r~~LA~~LgL~~rqV~vWFQNRR 86 (254)
..+||+.+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998854
Done!