BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041880
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
L LDL NR++G +P+ L + L SLN+S+N L G IP+G FD +Y N LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 64 GEPL 67
G PL
Sbjct: 306 GSPL 309
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
+T L L ++ + G IP+ L + L +L+ SYN L G +P
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
+ L +LD S+N L G +P + + L + NR+ G IP
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
S+ +S NRL G+IP A+LNL++ L + G+ F +D IHL
Sbjct: 176 FTSMTISRNRLTGKIPP------TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 64 GEPL 67
L
Sbjct: 230 KNSL 233
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 12 NRLHGRIPEQLLGVTAL-ASLNLSYNRLRGRIP 43
NR+ G IP+ + L S+ +S NRL G+IP
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+ L LDLS N+L GRIP+ + +T L ++LS N L G IP QF TF ++ N
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 61 HLCGEPL 67
LCG PL
Sbjct: 739 GLCGYPL 745
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR--GNQFN----TFDND 54
+ LE+L L FN L G IP L T L ++LS NRL G IP+ G N N+
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 55 SYIGNI 60
S+ GNI
Sbjct: 525 SFSGNI 530
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
++ L L L N L G IP++L+ V L +L L +N L G IP G T N + N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 61 HLCGE 65
L GE
Sbjct: 501 RLTGE 505
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTA-LASLNLSYNRLRGRI 42
M L+ LDLSFN G +PE L ++A L +L+LS N G I
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
+ L SL LSFN L G IP L ++ L L L N L G IP+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
L+ L L N G+IP L + L SL+LS+N L G IP
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
+AL+ LD+S N+L G + T L LN+S N+ G IP
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
T L + LS NRL G IP+ + + LA L LS N G IP
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+ L LDLS N+L GRIP+ + +T L ++LS N L G IP QF TF ++ N
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 61 HLCGEPL 67
LCG PL
Sbjct: 736 GLCGYPL 742
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR--GNQFN----TFDND 54
+ LE+L L FN L G IP L T L ++LS NRL G IP+ G N N+
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 55 SYIGNI 60
S+ GNI
Sbjct: 522 SFSGNI 527
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
++ L L L N L G IP++L+ V L +L L +N L G IP G
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTA-LASLNLSYNRLRGRI 42
M L+ LDLSFN G +PE L ++A L +L+LS N G I
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
+ L SL LSFN L G IP L ++ L L L N L G IP+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
L+ L L N G+IP L + L SL+LS+N L G IP
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
+AL+ LD+S N+L G + T L LN+S N+ G IP
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
T L + LS NRL G IP+ + + LA L LS N G IP
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 0.22, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
++ LDL N++ IP+Q++ + AL LN++ N+L+ +P G FD + + I L
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDG----IFDRLTSLQKIWLH 476
Query: 64 GEPLTVTC 71
P +C
Sbjct: 477 TNPWDCSC 484
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
L +DLS NR+ + +T L +L LSYNRLR PR TFD + + L
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-----TFDGLKSLRLLSLH 110
Query: 64 GEPLTV 69
G ++V
Sbjct: 111 GNDISV 116
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
MT L +L LS+NRL P G+ +L L+L N + +P G F++ S + ++
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEG----AFNDLSALSHL 131
Query: 61 HLCGEPLTVTCS 72
+ PL C+
Sbjct: 132 AIGANPLYCDCN 143
>pdb|1LD4|M Chain M, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|N Chain N, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|O Chain O, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|P Chain P, Placement Of The Structural Proteins In Sindbis Virus
pdb|3J0F|E Chain E, Sindbis Virion
pdb|3J0F|F Chain F, Sindbis Virion
pdb|3J0F|G Chain G, Sindbis Virion
pdb|3J0F|H Chain H, Sindbis Virion
Length = 439
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 60 IHLCGEPLTVTCSNDGQPKAPPSASTDHEEDE-------TPSWFDWKMAKLGYASGVVIG 112
+ LCG+ TC+ + +P A ST H+ D+ SW W A G AS ++I
Sbjct: 367 VSLCGK--KTTCNAECKPPADHIVSTPHKNDQEFQAAISKTSW-SWLFALFGGASSLLI- 422
Query: 113 LSIGYMVFS 121
IG M+F+
Sbjct: 423 --IGLMIFA 429
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+ LE LDLS+N + + LG+ L L L N+L+ +P G FD + + I
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG----IFDRLTSLQKI 400
Query: 61 HLCGEPLTVTC 71
L P +C
Sbjct: 401 WLHTNPWDCSC 411
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 84 STDHEEDETPSWFDWKMAKLGYASGVVIGLSIG 116
+T EED +P W W M L + G + G ++
Sbjct: 506 TTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALA 538
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 ASLNLSYNRLR----GRIPRGNQ-FNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPS 82
A L+ +Y+ +R G GNQ F ++ ND++ + + VT SNDG P PP+
Sbjct: 144 AQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPA 202
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 ASLNLSYNRLR----GRIPRGNQ-FNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPS 82
A L+ +Y+ +R G GNQ F ++ ND++ + + VT SNDG P PP+
Sbjct: 144 AQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPA 202
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 ASLNLSYNRLR----GRIPRGNQ-FNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPS 82
A L+ +Y+ +R G GNQ F ++ ND++ + + VT SNDG P PP+
Sbjct: 144 AQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPA 202
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 ASLNLSYNRLR----GRIPRGNQ-FNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPS 82
A L+ +Y+ +R G GNQ F ++ ND++ + + VT SNDG P PP+
Sbjct: 144 AQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPA 202
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
L+ L+L++N+++ E G+ L LNLSYN L
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 23/102 (22%)
Query: 41 RIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKM 100
+P F ++D Y+GNI L H TP + +
Sbjct: 114 NMPNHTHFVQHNDDIYVGNIKL---------------------KVLHTPGHTPESISFLL 152
Query: 101 AKLGYASGVVIGLSIGYMVF--SIGRPRWLVKMVERDQQKKV 140
G + V +GL G +F IGRP L K V+ + ++
Sbjct: 153 TDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEI 194
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 4 LESLDLSFNRLHGRIPEQ-LLGVTALASLNLSY 35
LE LDL+F RLH P+ + L LNL+Y
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
L L+ +N+L G++P LASLNL+YN++
Sbjct: 332 LGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365
>pdb|3IYW|L Chain L, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|M Chain M, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3N9G|L Chain L, Crystal Structure Of The Fab Fragment Of The Human
Neutralizing Anti- West Nile Virus Mab Cr4354
Length = 220
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIH 61
TA + L N+ +P++ G + S +L+ + L+ + + +DS G +
Sbjct: 43 TAPKLLIYGNNQRPSGVPDRFSGSKSGTSASLAISGLQSED-EADYYCAAWDDSLNGPVF 101
Query: 62 LCGEPLTVTCSNDGQPKAPPS 82
G LTV + GQPKA PS
Sbjct: 102 GGGTKLTVLGAAAGQPKAAPS 122
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 321
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
+T L L L N++ P L G+TAL +L L+ N+L P N N Y NI
Sbjct: 263 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 320
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
T L LDLS+N LH + +L L+L YN ++ PR
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 191
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 54 DSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGL 113
DS+ GN+ G L VT S +G P D + DW L AS +
Sbjct: 59 DSHAGNLPREGAVLIVTASYNGHPP-----------DNAKQFVDW----LDQASADEVK- 102
Query: 114 SIGYMVFSIGRPRW 127
+ Y VF G W
Sbjct: 103 GVRYSVFGCGDKNW 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,406,698
Number of Sequences: 62578
Number of extensions: 181143
Number of successful extensions: 443
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 56
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)