Query 041880
Match_columns 149
No_of_seqs 193 out of 2264
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.3 2.5E-12 5.5E-17 109.8 8.1 70 2-71 466-537 (623)
2 PLN00113 leucine-rich repeat r 99.3 1.1E-11 2.3E-16 109.9 7.5 66 1-66 546-611 (968)
3 PLN03150 hypothetical protein; 98.8 3.3E-08 7.2E-13 84.7 9.5 59 1-59 441-500 (623)
4 PLN00113 leucine-rich repeat r 98.6 2.2E-07 4.9E-12 82.6 10.0 60 2-61 523-583 (968)
5 PF12799 LRR_4: Leucine Rich r 98.4 2.6E-07 5.6E-12 52.3 2.9 37 2-39 1-37 (44)
6 PF13855 LRR_8: Leucine rich r 97.9 8.9E-06 1.9E-10 48.7 2.6 43 2-44 1-43 (61)
7 PF13855 LRR_8: Leucine rich r 97.8 1.4E-05 3E-10 47.9 2.3 38 1-38 24-61 (61)
8 PF00560 LRR_1: Leucine Rich R 97.5 4E-05 8.6E-10 36.8 0.7 21 3-24 1-21 (22)
9 KOG0472 Leucine-rich repeat pr 97.0 0.00041 8.9E-09 56.7 2.2 58 1-60 251-308 (565)
10 PRK15387 E3 ubiquitin-protein 96.5 0.001 2.2E-08 58.7 1.2 40 4-44 424-463 (788)
11 KOG0472 Leucine-rich repeat pr 96.3 0.0026 5.6E-08 52.2 2.1 42 1-45 504-545 (565)
12 PLN03210 Resistant to P. syrin 96.1 0.007 1.5E-07 55.7 4.5 57 2-58 778-834 (1153)
13 PF14580 LRR_9: Leucine-rich r 95.9 0.0051 1.1E-07 44.9 2.2 37 2-40 42-78 (175)
14 KOG4579 Leucine-rich repeat (L 95.6 0.0018 3.8E-08 46.0 -1.2 40 2-42 77-116 (177)
15 KOG0617 Ras suppressor protein 95.5 0.005 1.1E-07 45.3 0.7 35 3-38 57-91 (264)
16 PF14580 LRR_9: Leucine-rich r 95.5 0.012 2.5E-07 43.0 2.6 39 1-40 63-102 (175)
17 PLN03210 Resistant to P. syrin 95.4 0.026 5.7E-07 52.0 5.1 57 2-58 657-713 (1153)
18 PF13504 LRR_7: Leucine rich r 95.3 0.0086 1.9E-07 26.7 0.9 13 3-15 2-14 (17)
19 KOG1259 Nischarin, modulator o 95.2 0.008 1.7E-07 47.8 1.0 38 2-41 307-344 (490)
20 KOG0617 Ras suppressor protein 94.9 0.01 2.2E-07 43.7 0.7 43 1-44 78-121 (264)
21 smart00370 LRR Leucine-rich re 94.8 0.025 5.4E-07 27.7 1.9 20 1-21 1-20 (26)
22 smart00369 LRR_TYP Leucine-ric 94.8 0.025 5.4E-07 27.7 1.9 20 1-21 1-20 (26)
23 KOG0444 Cytoskeletal regulator 94.8 0.0073 1.6E-07 52.3 -0.3 33 7-40 131-164 (1255)
24 PRK15387 E3 ubiquitin-protein 94.3 0.055 1.2E-06 48.0 4.0 38 2-40 302-356 (788)
25 KOG0444 Cytoskeletal regulator 93.9 0.017 3.7E-07 50.2 0.1 38 2-39 78-116 (1255)
26 PF13516 LRR_6: Leucine Rich r 93.6 0.013 2.9E-07 28.2 -0.6 22 1-22 1-22 (24)
27 PRK15370 E3 ubiquitin-protein 93.5 0.1 2.2E-06 46.2 4.3 13 27-39 263-275 (754)
28 KOG2739 Leucine-rich acidic nu 93.4 0.048 1E-06 42.0 1.8 40 1-40 64-105 (260)
29 KOG1859 Leucine-rich repeat pr 93.4 0.0076 1.6E-07 52.8 -2.8 63 1-64 208-294 (1096)
30 KOG4194 Membrane glycoprotein 93.0 0.042 9E-07 47.3 1.1 39 2-40 293-331 (873)
31 PRK15370 E3 ubiquitin-protein 92.9 0.12 2.6E-06 45.8 3.7 34 3-39 347-380 (754)
32 cd00116 LRR_RI Leucine-rich re 92.3 0.09 1.9E-06 40.6 2.0 40 2-41 165-208 (319)
33 cd00116 LRR_RI Leucine-rich re 92.0 0.081 1.8E-06 40.9 1.4 37 4-40 110-151 (319)
34 KOG0532 Leucine-rich repeat (L 91.5 0.14 3E-06 44.0 2.4 38 3-41 212-249 (722)
35 KOG4194 Membrane glycoprotein 91.4 0.073 1.6E-06 45.9 0.6 45 1-45 268-312 (873)
36 KOG4658 Apoptotic ATPase [Sign 90.3 0.16 3.4E-06 45.9 1.7 44 1-45 570-613 (889)
37 KOG1859 Leucine-rich repeat pr 90.2 0.05 1.1E-06 47.9 -1.4 39 2-43 187-225 (1096)
38 COG4886 Leucine-rich repeat (L 90.1 0.1 2.2E-06 42.0 0.4 36 3-39 141-176 (394)
39 KOG4237 Extracellular matrix p 90.1 0.1 2.2E-06 42.9 0.3 62 1-64 273-361 (498)
40 COG4886 Leucine-rich repeat (L 90.0 0.29 6.3E-06 39.4 2.9 42 2-45 255-296 (394)
41 PF12799 LRR_4: Leucine Rich r 89.4 0.27 5.9E-06 27.3 1.7 33 26-59 1-34 (44)
42 KOG1644 U2-associated snRNP A' 89.2 0.54 1.2E-05 35.4 3.6 39 4-44 44-82 (233)
43 smart00364 LRR_BAC Leucine-ric 88.4 0.32 6.9E-06 24.2 1.3 16 3-19 3-18 (26)
44 KOG2982 Uncharacterized conser 87.9 0.19 4.1E-06 40.1 0.5 41 3-43 72-114 (418)
45 KOG0531 Protein phosphatase 1, 87.9 0.34 7.3E-06 39.7 2.0 41 2-43 95-135 (414)
46 KOG0618 Serine/threonine phosp 87.4 0.21 4.6E-06 45.0 0.5 59 2-61 407-488 (1081)
47 KOG0618 Serine/threonine phosp 87.2 0.22 4.9E-06 44.8 0.5 41 1-43 90-130 (1081)
48 smart00368 LRR_RI Leucine rich 86.7 0.55 1.2E-05 23.4 1.6 14 2-15 2-15 (28)
49 PF04478 Mid2: Mid2 like cell 86.6 0.67 1.5E-05 33.0 2.6 9 103-111 56-64 (154)
50 smart00365 LRR_SD22 Leucine-ri 85.8 0.71 1.5E-05 22.9 1.7 15 1-15 1-15 (26)
51 KOG0531 Protein phosphatase 1, 84.5 0.44 9.6E-06 39.0 1.0 38 1-40 117-154 (414)
52 KOG1259 Nischarin, modulator o 84.0 0.44 9.5E-06 38.2 0.7 37 3-40 285-321 (490)
53 PF07204 Orthoreo_P10: Orthore 78.5 2.1 4.5E-05 28.0 2.3 29 106-135 48-76 (98)
54 KOG0532 Leucine-rich repeat (L 77.2 0.91 2E-05 39.2 0.4 34 5-39 146-179 (722)
55 PF08374 Protocadherin: Protoc 75.4 6.1 0.00013 29.8 4.3 9 102-110 40-48 (221)
56 KOG4237 Extracellular matrix p 75.1 2.2 4.8E-05 35.4 2.1 38 1-38 321-358 (498)
57 KOG4579 Leucine-rich repeat (L 73.4 0.56 1.2E-05 33.5 -1.4 43 1-45 99-141 (177)
58 KOG1644 U2-associated snRNP A' 72.6 3.8 8.2E-05 31.0 2.7 60 1-60 63-124 (233)
59 KOG3207 Beta-tubulin folding c 71.0 1 2.3E-05 37.5 -0.6 39 2-40 146-186 (505)
60 COG5238 RNA1 Ran GTPase-activa 69.5 4.5 9.9E-05 32.1 2.6 42 1-43 91-136 (388)
61 KOG3207 Beta-tubulin folding c 68.3 1.4 2.9E-05 36.9 -0.5 15 22-36 267-281 (505)
62 KOG4658 Apoptotic ATPase [Sign 67.3 2.2 4.8E-05 38.7 0.6 41 2-43 595-635 (889)
63 PF02439 Adeno_E3_CR2: Adenovi 64.9 11 0.00025 20.3 2.8 16 103-118 6-21 (38)
64 PF01102 Glycophorin_A: Glycop 61.3 7.2 0.00016 26.8 2.1 15 103-117 67-81 (122)
65 KOG2982 Uncharacterized conser 59.7 9.7 0.00021 30.7 2.8 18 1-18 96-113 (418)
66 PF11770 GAPT: GRB2-binding ad 57.9 7.8 0.00017 27.5 1.8 11 128-138 43-53 (158)
67 PF04478 Mid2: Mid2 like cell 57.5 10 0.00022 27.1 2.3 20 100-119 49-68 (154)
68 PF01102 Glycophorin_A: Glycop 56.5 3.8 8.3E-05 28.1 0.1 19 103-121 63-81 (122)
69 PF15179 Myc_target_1: Myc tar 54.0 11 0.00023 27.8 2.0 25 97-121 17-41 (197)
70 PF12768 Rax2: Cortical protei 52.8 38 0.00082 26.6 5.1 14 106-119 237-250 (281)
71 PF12273 RCR: Chitin synthesis 52.8 9.4 0.0002 26.1 1.6 12 110-121 9-20 (130)
72 PRK15386 type III secretion pr 52.7 18 0.00039 30.2 3.4 9 4-12 96-104 (426)
73 PF14575 EphA2_TM: Ephrin type 52.2 6.3 0.00014 24.6 0.6 10 107-116 8-17 (75)
74 TIGR00864 PCC polycystin catio 51.7 10 0.00022 38.4 2.1 30 8-38 1-31 (2740)
75 PF06295 DUF1043: Protein of u 49.1 14 0.0003 25.4 1.9 17 106-122 3-19 (128)
76 PF03302 VSP: Giardia variant- 49.1 16 0.00035 30.0 2.6 20 102-121 371-390 (397)
77 PF15050 SCIMP: SCIMP protein 47.3 12 0.00025 25.7 1.3 13 109-121 17-29 (133)
78 PF08374 Protocadherin: Protoc 46.4 33 0.00071 26.0 3.6 25 95-119 36-60 (221)
79 PF14991 MLANA: Protein melan- 46.1 5.8 0.00012 26.9 -0.3 6 128-133 53-58 (118)
80 TIGR01478 STEVOR variant surfa 45.3 5.8 0.00013 31.2 -0.4 10 127-136 281-290 (295)
81 KOG3763 mRNA export factor TAP 44.9 11 0.00024 32.5 1.0 35 2-36 218-254 (585)
82 PTZ00370 STEVOR; Provisional 44.4 23 0.00049 28.0 2.7 8 122-129 281-288 (296)
83 KOG1909 Ran GTPase-activating 44.0 7.1 0.00015 31.7 -0.1 37 2-38 92-132 (382)
84 PRK11677 hypothetical protein; 44.0 13 0.00029 25.9 1.2 18 105-122 6-23 (134)
85 PHA02849 putative transmembran 43.6 21 0.00045 22.5 1.9 19 128-146 43-61 (82)
86 PF06305 DUF1049: Protein of u 42.4 16 0.00035 21.7 1.3 15 105-119 24-38 (68)
87 COG3105 Uncharacterized protei 41.5 14 0.0003 25.7 1.0 24 103-126 9-32 (138)
88 PF15069 FAM163: FAM163 family 41.3 37 0.00081 23.9 3.1 24 104-128 10-33 (143)
89 PF12768 Rax2: Cortical protei 40.3 43 0.00094 26.3 3.7 27 95-121 222-248 (281)
90 TIGR00985 3a0801s04tom mitocho 37.2 32 0.00069 24.4 2.3 24 103-126 9-32 (148)
91 PF06697 DUF1191: Protein of u 36.8 1.4E+02 0.0031 23.5 6.0 14 102-115 216-229 (278)
92 PF03672 UPF0154: Uncharacteri 35.3 44 0.00096 20.2 2.4 14 106-119 4-17 (64)
93 PF15176 LRR19-TM: Leucine-ric 35.2 13 0.00027 24.7 -0.0 6 123-128 39-44 (102)
94 KOG1909 Ran GTPase-activating 34.8 17 0.00036 29.7 0.6 37 2-38 213-253 (382)
95 PRK01844 hypothetical protein; 33.4 48 0.001 20.6 2.4 12 108-119 13-24 (72)
96 PF10725 DUF2517: Protein of u 33.3 46 0.00099 19.9 2.2 34 107-140 16-49 (63)
97 PHA02815 hypothetical protein; 32.2 24 0.00052 21.1 0.9 23 124-146 19-41 (64)
98 smart00367 LRR_CC Leucine-rich 29.4 43 0.00093 15.8 1.4 11 2-12 2-12 (26)
99 PF05808 Podoplanin: Podoplani 28.7 19 0.00041 26.0 0.0 17 100-116 129-145 (162)
100 PF14610 DUF4448: Protein of u 27.8 58 0.0013 23.7 2.5 16 98-113 157-172 (189)
101 PRK10132 hypothetical protein; 27.6 43 0.00093 22.4 1.6 16 105-120 90-105 (108)
102 PRK00523 hypothetical protein; 26.6 74 0.0016 19.7 2.4 6 125-130 27-32 (72)
103 PF15183 MRAP: Melanocortin-2 26.3 98 0.0021 19.9 2.9 20 101-120 38-57 (90)
104 PHA03099 epidermal growth fact 26.2 30 0.00064 24.1 0.6 23 99-121 99-121 (139)
105 PF14986 DUF4514: Domain of un 25.9 85 0.0018 18.3 2.4 24 96-119 18-41 (61)
106 PF10857 DUF2701: Protein of u 25.8 43 0.00094 20.1 1.2 19 128-146 24-42 (63)
107 PF12297 EVC2_like: Ellis van 25.2 26 0.00056 29.1 0.2 33 102-134 71-103 (429)
108 KOG4056 Translocase of outer m 25.0 1E+02 0.0022 21.8 3.0 23 104-126 12-34 (143)
109 TIGR01477 RIFIN variant surfac 24.8 68 0.0015 26.1 2.5 13 105-117 312-324 (353)
110 PF11980 DUF3481: Domain of un 24.4 43 0.00093 21.4 1.0 24 98-121 16-39 (87)
111 PF03229 Alpha_GJ: Alphavirus 24.3 1.8E+02 0.0038 19.9 4.0 9 119-127 106-114 (126)
112 PF04418 DUF543: Domain of unk 23.0 89 0.0019 19.5 2.3 17 105-121 33-49 (75)
113 PF12732 YtxH: YtxH-like prote 22.6 1.2E+02 0.0026 18.3 2.9 16 104-119 4-19 (74)
114 PRK10404 hypothetical protein; 20.3 68 0.0015 21.1 1.5 15 105-119 84-98 (101)
115 COG3216 Uncharacterized protei 20.3 76 0.0017 23.3 1.8 37 98-135 135-171 (184)
116 PF10577 UPF0560: Uncharacteri 20.3 20 0.00044 32.1 -1.4 25 103-127 276-301 (807)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.35 E-value=2.5e-12 Score=109.76 Aligned_cols=70 Identities=41% Similarity=0.612 Sum_probs=45.0
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc--ccCCCccccccccCccCCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ--FNTFDNDSYIGNIHLCGEPLTVTC 71 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c 71 (149)
+.|+.|||++|+|+|.+|..++++++|+.|+|++|+|+|.+|.... +.......+.+|+.+|+.+....|
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 4566677777777777777777777777777777777777775422 122234557788888876543444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.26 E-value=1.1e-11 Score=109.93 Aligned_cols=66 Identities=41% Similarity=0.683 Sum_probs=57.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEP 66 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~ 66 (149)
+++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|...++..+....+.||+.+||.+
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 467888888888888888888888888999999999999999988888888888899999999854
No 3
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=3.3e-08 Score=84.68 Aligned_cols=59 Identities=37% Similarity=0.580 Sum_probs=47.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
|++|+.|||++|+|+|.+|..++.++.|+.|||++|+|+|.+|... .+..+....+.+|
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 4678999999999999999999999999999999999999999742 2334444445555
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.63 E-value=2.2e-07 Score=82.64 Aligned_cols=60 Identities=35% Similarity=0.487 Sum_probs=40.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc-ccCCCccccccccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ-FNTFDNDSYIGNIH 61 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~-~~~~~~~~~~gn~~ 61 (149)
++|+.|||++|.++|.+|..+..+++|+.|++++|+++|.+|.... +..+....+.+|..
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 5677777777777777777777778888888888888887776421 22333444555543
No 5
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.40 E-value=2.6e-07 Score=52.32 Aligned_cols=37 Identities=41% Similarity=0.595 Sum_probs=32.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
++|++|++++|+++ .||..+.+|+.|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 79998999999999999999987
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=8.9e-06 Score=48.74 Aligned_cols=43 Identities=40% Similarity=0.507 Sum_probs=35.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|++++|+|+.--+..+..++.|++|++++|++...-|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~ 43 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD 43 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence 5799999999999944446788999999999999999755444
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=1.4e-05 Score=47.89 Aligned_cols=38 Identities=39% Similarity=0.521 Sum_probs=34.3
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l 38 (149)
+++|++||+++|.++.--|..+..++.|++|++++|++
T Consensus 24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999977777899999999999999975
No 8
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.48 E-value=4e-05 Score=36.78 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=17.1
Q ss_pred CccEEeCCCCcCceeCCcchhc
Q 041880 3 ALESLDLSFNRLHGRIPEQLLG 24 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~ 24 (149)
+|++|||++|+|+ .||+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788999999988 88887654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.99 E-value=0.00041 Score=56.69 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=47.9
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 60 (149)
|++|..|||..|.|. ++|..+.-+.+|+.||+|+|.+++--+.-+.. .+....+.|||
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 467889999999998 89999999999999999999999866654433 55555677886
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.50 E-value=0.001 Score=58.66 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=24.5
Q ss_pred ccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
|+.|+|++|+|+ .||..+.+++.|+.|+|++|+|+|.+|.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 344445555554 5666666666777777777777766655
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.27 E-value=0.0026 Score=52.19 Aligned_cols=42 Identities=43% Similarity=0.551 Sum_probs=33.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
|.+|..|||.+|.+. +||+.+++|++|++|++.+|.|. .|..
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 356778888888887 78888888888888888888887 5543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.13 E-value=0.007 Score=55.66 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG 58 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~g 58 (149)
++|+.|+|++|...+++|.+++++++|+.|+++++..-+.+|....+..+....+.|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 478899999999999999999999999999999987677788754333333333333
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.95 E-value=0.0051 Score=44.88 Aligned_cols=37 Identities=41% Similarity=0.604 Sum_probs=11.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
.+|+.||||+|.++ .|+ .+..++.|++|++++|.++.
T Consensus 42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc
Confidence 35666677777665 332 35556666666666666653
No 14
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.65 E-value=0.0018 Score=45.95 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=32.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRI 42 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~i 42 (149)
+.++.|+|++|.++ .+|.++..++.|+.+|+++|.|+-..
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccch
Confidence 35677888888887 78888999999999999998887643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.49 E-value=0.005 Score=45.34 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=19.9
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l 38 (149)
+|+.|++++|++. ++|.+++.++.|+.|+++-|.|
T Consensus 57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred hhhhhhcccchhh-hcChhhhhchhhhheecchhhh
Confidence 4555666666655 5555555555555555555554
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.48 E-value=0.012 Score=42.97 Aligned_cols=39 Identities=38% Similarity=0.541 Sum_probs=15.3
Q ss_pred CCCccEEeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G 40 (149)
++.|+.|++++|.++ .|+..+ ..++.|+.|++++|++..
T Consensus 63 L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 63 LPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp -TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S
T ss_pred hhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC
Confidence 356777888888887 454444 357778888888877754
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.40 E-value=0.026 Score=52.01 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=34.3
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG 58 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~g 58 (149)
++|+.|+|++|..-..+|.++.+++.|+.|+++++..-+.+|....+..+....+.|
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 456666676666556677777777777777777665556666543333333333333
No 18
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.33 E-value=0.0086 Score=26.71 Aligned_cols=13 Identities=62% Similarity=0.759 Sum_probs=6.1
Q ss_pred CccEEeCCCCcCc
Q 041880 3 ALESLDLSFNRLH 15 (149)
Q Consensus 3 ~L~~LdLs~N~L~ 15 (149)
+|+.|||++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.20 E-value=0.008 Score=47.84 Aligned_cols=38 Identities=34% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
|.++.||+|+|.+. .+ ..+..+++|+.||||+|.|+-.
T Consensus 307 Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred cceeEEecccccee-ee-hhhhhcccceEeecccchhHhh
Confidence 56788888888886 33 2388899999999999988643
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.86 E-value=0.01 Score=43.74 Aligned_cols=43 Identities=33% Similarity=0.594 Sum_probs=35.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC-CCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR-IPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~-iP~ 44 (149)
|+.|+.|+++-|.|. .+|..++.++.|+.||+++|+|+.. +|.
T Consensus 78 l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 78 LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCc
Confidence 467888999999997 6899999999999999999998764 443
No 21
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.83 E-value=0.025 Score=27.70 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=13.5
Q ss_pred CCCccEEeCCCCcCceeCCcc
Q 041880 1 MTALESLDLSFNRLHGRIPEQ 21 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~ 21 (149)
|++|+.|+|++|+|. .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777777777776 55554
No 22
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.83 E-value=0.025 Score=27.70 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=13.5
Q ss_pred CCCccEEeCCCCcCceeCCcc
Q 041880 1 MTALESLDLSFNRLHGRIPEQ 21 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~ 21 (149)
|++|+.|+|++|+|. .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777777777776 55554
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.75 E-value=0.0073 Score=52.35 Aligned_cols=33 Identities=45% Similarity=0.696 Sum_probs=14.3
Q ss_pred EeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880 7 LDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG 40 (149)
Q Consensus 7 LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G 40 (149)
|+||+|++. +||.++ .+|+.|-.||||+|.|.-
T Consensus 131 LNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 131 LNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred EEcccCccc-cCCchHHHhhHhHhhhccccchhhh
Confidence 334444433 344332 244444455555555443
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.31 E-value=0.055 Score=48.05 Aligned_cols=38 Identities=32% Similarity=0.491 Sum_probs=21.4
Q ss_pred CCccEEeCCCCcCceeCCc---chhcC--------------CCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPE---QLLGV--------------TALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~---~l~~l--------------~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|+|++ +|. .+..| ..|+.|++++|+|++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence 356677777777764 332 21111 256667777777664
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.89 E-value=0.017 Score=50.21 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCccEEeCCCCcC-ceeCCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRL-HGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L-~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+.|.++++.+|+| +..||..+..|..|+.||||+|+|.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence 4455555555555 2245666666666666666666654
No 26
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.61 E-value=0.013 Score=28.20 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=12.7
Q ss_pred CCCccEEeCCCCcCceeCCcch
Q 041880 1 MTALESLDLSFNRLHGRIPEQL 22 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l 22 (149)
+++|+.|||++|.++..-...|
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3577888888888776544433
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.52 E-value=0.1 Score=46.21 Aligned_cols=13 Identities=46% Similarity=0.582 Sum_probs=6.5
Q ss_pred CCCEEEccCCcCC
Q 041880 27 ALASLNLSYNRLR 39 (149)
Q Consensus 27 ~L~~l~ls~N~l~ 39 (149)
.|+.|++++|+|+
T Consensus 263 ~L~~L~Ls~N~L~ 275 (754)
T PRK15370 263 ALQSLDLFHNKIS 275 (754)
T ss_pred CCCEEECcCCccC
Confidence 4455555555554
No 28
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.42 E-value=0.048 Score=42.03 Aligned_cols=40 Identities=33% Similarity=0.419 Sum_probs=34.9
Q ss_pred CCCccEEeCCCC--cCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSFN--RLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~N--~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
|+.|+.|++|.| +.++.++...-.+++|++++++.|++.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 578999999999 7788888777788999999999999863
No 29
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.36 E-value=0.0076 Score=52.82 Aligned_cols=63 Identities=29% Similarity=0.397 Sum_probs=38.5
Q ss_pred CCCccEEeCCCCcCceeCCc----------------------chhcCCCCCEEEccCCcCCCCCCCC--CcccCCCcccc
Q 041880 1 MTALESLDLSFNRLHGRIPE----------------------QLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSY 56 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~----------------------~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~ 56 (149)
++.|++|||++|.|. .+|. .+.+|.+|+.|||++|-|++----. ..+..+....+
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred cccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 467888888888885 4453 2456778888899998887631100 01112233456
Q ss_pred ccccCccC
Q 041880 57 IGNIHLCG 64 (149)
Q Consensus 57 ~gn~~lcg 64 (149)
.|||--|.
T Consensus 287 eGNPl~c~ 294 (1096)
T KOG1859|consen 287 EGNPLCCA 294 (1096)
T ss_pred cCCccccC
Confidence 78876664
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=93.04 E-value=0.042 Score=47.32 Aligned_cols=39 Identities=36% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+.|+.||||+|.+.---+++..-...|+.|+|++|+++.
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 445556666666655555555555566666666666554
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=92.86 E-value=0.12 Score=45.76 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=18.0
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+|+.|+|++|+|+ .+|..+. +.|+.|++++|+|+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 4555555555554 3444332 35556666666555
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=92.32 E-value=0.09 Score=40.64 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=29.9
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
..|+.|+|++|++++. ++..+..++.|+.|++++|.+++.
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 4688899999988853 444566667888999988887643
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=91.97 E-value=0.081 Score=40.89 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=16.4
Q ss_pred ccEEeCCCCcCce----eCCcchhcC-CCCCEEEccCCcCCC
Q 041880 4 LESLDLSFNRLHG----RIPEQLLGV-TALASLNLSYNRLRG 40 (149)
Q Consensus 4 L~~LdLs~N~L~G----~iP~~l~~l-~~L~~l~ls~N~l~G 40 (149)
|++|++++|++++ .+...+..+ +.|+.|++++|.+++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 4445555554442 222233333 445555555555543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.54 E-value=0.14 Score=43.97 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=34.8
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
.|..||+|+|+++ .||..+.+|..|++|.|.+|.|.-+
T Consensus 212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 3678999999998 8999999999999999999999765
No 35
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.43 E-value=0.073 Score=45.90 Aligned_cols=45 Identities=33% Similarity=0.474 Sum_probs=38.7
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
|..++.|+|+.|+++.-=-.++..|+.|+.|+||+|.++...++.
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 357899999999998666678999999999999999998877753
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=90.31 E-value=0.16 Score=45.88 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=37.4
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
|+.|..||||+|.=-+.+|.++++|-+|++||++...++ .+|.+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~ 613 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG 613 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH
Confidence 567889999998777899999999999999999988877 66754
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.17 E-value=0.05 Score=47.94 Aligned_cols=39 Identities=46% Similarity=0.617 Sum_probs=32.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+.|++|||++|.++--- .+..++.|..||+++|+|.- +|
T Consensus 187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp 225 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VP 225 (1096)
T ss_pred HHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-cc
Confidence 56789999999998532 78889999999999999964 44
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.13 E-value=0.1 Score=42.01 Aligned_cols=36 Identities=39% Similarity=0.635 Sum_probs=17.0
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
.|+.||+++|++. .+|..+.+++.|+.|++++|+++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence 3444555555544 34444444444444444444443
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=90.06 E-value=0.1 Score=42.90 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCC------------------------CCCEEEccCCcCCCCCCCCCccc---CCCc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVT------------------------ALASLNLSYNRLRGRIPRGNQFN---TFDN 53 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~------------------------~L~~l~ls~N~l~G~iP~~~~~~---~~~~ 53 (149)
|+.|+.|||++|.+++--+.++..+. .|++|+|..|+++-.-|.. |. .+..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~l~~ 350 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFSLST 350 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccceeee
Confidence 57899999999999987776655444 5555666666665544432 22 2223
Q ss_pred cccccccCccC
Q 041880 54 DSYIGNIHLCG 64 (149)
Q Consensus 54 ~~~~gn~~lcg 64 (149)
..+.+||..|.
T Consensus 351 l~l~~Np~~Cn 361 (498)
T KOG4237|consen 351 LNLLSNPFNCN 361 (498)
T ss_pred eehccCcccCc
Confidence 34566776664
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.04 E-value=0.29 Score=39.40 Aligned_cols=42 Identities=40% Similarity=0.487 Sum_probs=31.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
+.++.|++++|.++ .++. ++.+..|+.|+++.|.+....|..
T Consensus 255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 45778888888887 5555 778888888888888887776653
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=89.37 E-value=0.27 Score=27.32 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCCCEEEccCCcCCCCCCC-CCcccCCCccccccc
Q 041880 26 TALASLNLSYNRLRGRIPR-GNQFNTFDNDSYIGN 59 (149)
Q Consensus 26 ~~L~~l~ls~N~l~G~iP~-~~~~~~~~~~~~~gn 59 (149)
+.|++|++++|+++ .+|. -..+..+....+.+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCC
Confidence 46899999999999 4666 344555555666666
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.20 E-value=0.54 Score=35.41 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred ccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
...+||++|.+-- + ..+..++.|.+|.+.+|.+.-.=|.
T Consensus 44 ~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~ 82 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPD 82 (233)
T ss_pred cceecccccchhh-c-ccCCCccccceEEecCCcceeeccc
Confidence 4456777776631 1 2344566666777777766655444
No 43
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.42 E-value=0.32 Score=24.17 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=9.7
Q ss_pred CccEEeCCCCcCceeCC
Q 041880 3 ALESLDLSFNRLHGRIP 19 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP 19 (149)
.|+.|+.++|+|+ ++|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4666666666665 344
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=0.19 Score=40.11 Aligned_cols=41 Identities=37% Similarity=0.425 Sum_probs=31.9
Q ss_pred CccEEeCCCCcCce--eCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
.+..|||.+|.++- +|-.-+.+|+.|++||++.|+|+-+|-
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 45678999998864 455557789999999999999987654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.93 E-value=0.34 Score=39.67 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=27.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
.+|+.|+|..|++.. |...+..++.|++|++++|.++...+
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~ 135 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG 135 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccccccc
Confidence 467777788887763 33336667777788888777766544
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=87.37 E-value=0.21 Score=44.96 Aligned_cols=59 Identities=31% Similarity=0.429 Sum_probs=37.1
Q ss_pred CCccEEeCCCCcCceeCCc----------------------chhcCCCCCEEEccCCcCCC-CCCCCCcccCCCcccccc
Q 041880 2 TALESLDLSFNRLHGRIPE----------------------QLLGVTALASLNLSYNRLRG-RIPRGNQFNTFDNDSYIG 58 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~----------------------~l~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~g 58 (149)
..|+.|+||+|.|+ .||. .+..++.|+.+|+|.|+|+- .+|......++....+.|
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 34666777777665 4444 45667788888999988864 444433224455556777
Q ss_pred ccC
Q 041880 59 NIH 61 (149)
Q Consensus 59 n~~ 61 (149)
|..
T Consensus 486 N~~ 488 (1081)
T KOG0618|consen 486 NTR 488 (1081)
T ss_pred Ccc
Confidence 764
No 47
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=87.19 E-value=0.22 Score=44.81 Aligned_cols=41 Identities=37% Similarity=0.617 Sum_probs=33.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+.+|++|+|.+|.+. ..|.++..+.+|++||+|+|+|. ++|
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P 130 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP 130 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc
Confidence 356788888888887 78888888889999999988874 555
No 48
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.67 E-value=0.55 Score=23.41 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=9.4
Q ss_pred CCccEEeCCCCcCc
Q 041880 2 TALESLDLSFNRLH 15 (149)
Q Consensus 2 ~~L~~LdLs~N~L~ 15 (149)
++|+.|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777763
No 49
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=86.59 E-value=0.67 Score=32.99 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=3.4
Q ss_pred eeehhhHHH
Q 041880 103 LGYASGVVI 111 (149)
Q Consensus 103 ~~~~~~~~~ 111 (149)
+|+++.+++
T Consensus 56 VGVGg~ill 64 (154)
T PF04478_consen 56 VGVGGPILL 64 (154)
T ss_pred ecccHHHHH
Confidence 333333333
No 50
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.79 E-value=0.71 Score=22.86 Aligned_cols=15 Identities=53% Similarity=0.778 Sum_probs=10.1
Q ss_pred CCCccEEeCCCCcCc
Q 041880 1 MTALESLDLSFNRLH 15 (149)
Q Consensus 1 l~~L~~LdLs~N~L~ 15 (149)
+..|+.|+|++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777764
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.48 E-value=0.44 Score=38.98 Aligned_cols=38 Identities=39% Similarity=0.467 Sum_probs=26.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+++|++|||++|.++.-. .+..++.|+.|++++|.++.
T Consensus 117 ~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred hhcchheecccccccccc--chhhccchhhheeccCcchh
Confidence 457888899999887543 35566667777777776643
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=83.95 E-value=0.44 Score=38.24 Aligned_cols=37 Identities=41% Similarity=0.410 Sum_probs=31.8
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
.|+.||||+|.++ .|-.++--++.++.|++|+|.+.-
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~ 321 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT 321 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee
Confidence 4788999999998 677788888999999999998753
No 53
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=78.50 E-value=2.1 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHhhcCcchhHHHHHhhh
Q 041880 106 ASGVVIGLSIGYMVFSIGRPRWLVKMVERD 135 (149)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
+.|+++.++++++++. ++.+|.....+..
T Consensus 48 GGG~iLilIii~Lv~C-C~~K~K~~~~r~~ 76 (98)
T PF07204_consen 48 GGGLILILIIIALVCC-CRAKHKTSAARNT 76 (98)
T ss_pred cchhhhHHHHHHHHHH-hhhhhhhHhhhhH
Confidence 3455555555544444 5666653333333
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=77.17 E-value=0.91 Score=39.19 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=16.5
Q ss_pred cEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 5 ESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 5 ~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+.|-+++|+|+ .+|..++.+..|..||+++|++.
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 33444444443 44444554455555555555544
No 55
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=75.41 E-value=6.1 Score=29.78 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=3.6
Q ss_pred eeeehhhHH
Q 041880 102 KLGYASGVV 110 (149)
Q Consensus 102 ~~~~~~~~~ 110 (149)
++|+++|++
T Consensus 40 ~iaiVAG~~ 48 (221)
T PF08374_consen 40 MIAIVAGIM 48 (221)
T ss_pred eeeeecchh
Confidence 344444433
No 56
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=75.11 E-value=2.2 Score=35.37 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l 38 (149)
+..|+.|+|.+|+++---|..+.++.+|.+++|-.|.+
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 46788999999999999999999999999999988776
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=73.41 E-value=0.56 Score=33.49 Aligned_cols=43 Identities=33% Similarity=0.388 Sum_probs=34.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
++.|+.|++++|.|+ ..|.-+..|.+|..||...|.. -+||..
T Consensus 99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 467899999999998 5577788888888999887765 467765
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.62 E-value=3.8 Score=31.00 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC--CCCCCCcccCCCcccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG--RIPRGNQFNTFDNDSYIGNI 60 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G--~iP~~~~~~~~~~~~~~gn~ 60 (149)
++.|..|+|++|+++---|.--.-++.|..|.+.+|++.. .+-.-..+..+....+.||+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 4678999999999985444333345679999999998743 33332334445555667774
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=1 Score=37.50 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=19.3
Q ss_pred CCccEEeCCCCcCcee--CCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGR--IPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~--iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+.+..||||.|-|.-- +-.-...|++|+.|+++.|.|.-
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 3455566666655421 11223445566666666655543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=69.54 E-value=4.5 Score=32.14 Aligned_cols=42 Identities=38% Similarity=0.506 Sum_probs=33.1
Q ss_pred CCCccEEeCCCCcCceeCCcch----hcCCCCCEEEccCCcCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQL----LGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l----~~l~~L~~l~ls~N~l~G~iP 43 (149)
++.|+..|||.|.|.-..|..+ +.-+.|..|.+++|-+ |++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~a 136 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIA 136 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-Cccc
Confidence 3789999999999988888754 4567899999987765 4544
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=1.4 Score=36.87 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=6.5
Q ss_pred hhcCCCCCEEEccCC
Q 041880 22 LLGVTALASLNLSYN 36 (149)
Q Consensus 22 l~~l~~L~~l~ls~N 36 (149)
+++++.|+.|+++.+
T Consensus 267 ~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSST 281 (505)
T ss_pred cccccchhhhhcccc
Confidence 344444444444443
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=67.34 E-value=2.2 Score=38.68 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=35.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
-+|++|||+...++ .+|..+.+|..|.+||+.++.-...+|
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 46889999999998 899999999999999999876555554
No 63
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.89 E-value=11 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=7.4
Q ss_pred eeehhhHHHHHHHHHH
Q 041880 103 LGYASGVVIGLSIGYM 118 (149)
Q Consensus 103 ~~~~~~~~~~~~~~~~ 118 (149)
+++++++++++++..+
T Consensus 6 IaIIv~V~vg~~iiii 21 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIII 21 (38)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444555555444333
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.31 E-value=7.2 Score=26.78 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=7.2
Q ss_pred eeehhhHHHHHHHHH
Q 041880 103 LGYASGVVIGLSIGY 117 (149)
Q Consensus 103 ~~~~~~~~~~~~~~~ 117 (149)
+++++|+++|++..+
T Consensus 67 ~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH
Confidence 445555555554333
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.70 E-value=9.7 Score=30.70 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=15.5
Q ss_pred CCCccEEeCCCCcCceeC
Q 041880 1 MTALESLDLSFNRLHGRI 18 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~i 18 (149)
||.|+.|+|+.|+|+..|
T Consensus 96 lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDI 113 (418)
T ss_pred CccceEeeccCCcCCCcc
Confidence 688999999999997655
No 66
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=57.87 E-value=7.8 Score=27.55 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=5.9
Q ss_pred HHHHHhhhhhh
Q 041880 128 LVKMVERDQQK 138 (149)
Q Consensus 128 ~~~~~~~~~~~ 138 (149)
+++.++|+..+
T Consensus 43 LPkflqRRssk 53 (158)
T PF11770_consen 43 LPKFLQRRSSK 53 (158)
T ss_pred hHHHHHhhhhh
Confidence 45566655444
No 67
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=57.53 E-value=10 Score=27.10 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.0
Q ss_pred eeeeeehhhHHHHHHHHHHH
Q 041880 100 MAKLGYASGVVIGLSIGYMV 119 (149)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ 119 (149)
-+++|+++|+.+.+++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred cEEEEEEecccHHHHHHHHH
Confidence 45789999988888766444
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.48 E-value=3.8 Score=28.13 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=9.8
Q ss_pred eeehhhHHHHHHHHHHHhh
Q 041880 103 LGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ 121 (149)
.+.+++|++|++++++..+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHH
Confidence 3455555555555555544
No 69
>PF15179 Myc_target_1: Myc target protein 1
Probab=53.96 E-value=11 Score=27.83 Aligned_cols=25 Identities=32% Similarity=0.768 Sum_probs=16.0
Q ss_pred cceeeeeeehhhHHHHHHHHHHHhh
Q 041880 97 DWKMAKLGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (149)
++.-+++++-+.+++|++++.+++.
T Consensus 17 ~~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 17 DWEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777766655
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.81 E-value=38 Score=26.57 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHHHH
Q 041880 106 ASGVVIGLSIGYMV 119 (149)
Q Consensus 106 ~~~~~~~~~~~~~~ 119 (149)
+.|+++.++++.++
T Consensus 237 ALG~v~ll~l~Gii 250 (281)
T PF12768_consen 237 ALGTVFLLVLIGII 250 (281)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.78 E-value=9.4 Score=26.14 Aligned_cols=12 Identities=8% Similarity=0.376 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q 041880 110 VIGLSIGYMVFS 121 (149)
Q Consensus 110 ~~~~~~~~~~~~ 121 (149)
++++++++++++
T Consensus 9 i~~i~l~~~~~~ 20 (130)
T PF12273_consen 9 IVAILLFLFLFY 20 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=52.70 E-value=18 Score=30.17 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.2
Q ss_pred ccEEeCCCC
Q 041880 4 LESLDLSFN 12 (149)
Q Consensus 4 L~~LdLs~N 12 (149)
|++|++++|
T Consensus 96 Le~L~Ls~C 104 (426)
T PRK15386 96 LEKLTVCHC 104 (426)
T ss_pred hhheEccCc
Confidence 444444444
No 73
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=52.16 E-value=6.3 Score=24.56 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=3.7
Q ss_pred hhHHHHHHHH
Q 041880 107 SGVVIGLSIG 116 (149)
Q Consensus 107 ~~~~~~~~~~ 116 (149)
+|+++.++++
T Consensus 8 ~g~~~ll~~v 17 (75)
T PF14575_consen 8 VGVLLLLVLV 17 (75)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.66 E-value=10 Score=38.42 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=24.5
Q ss_pred eCCCCcCceeCCc-chhcCCCCCEEEccCCcC
Q 041880 8 DLSFNRLHGRIPE-QLLGVTALASLNLSYNRL 38 (149)
Q Consensus 8 dLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l 38 (149)
||++|+|+ .||. .+..+.+|+.|+|++|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 78999998 5554 566788999999999866
No 75
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.10 E-value=14 Score=25.42 Aligned_cols=17 Identities=35% Similarity=0.786 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHhhc
Q 041880 106 ASGVVIGLSIGYMVFSI 122 (149)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ 122 (149)
++++++|+++++++.+.
T Consensus 3 ~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666553
No 76
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=49.06 E-value=16 Score=30.04 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=9.9
Q ss_pred eeeehhhHHHHHHHHHHHhh
Q 041880 102 KLGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ 121 (149)
.|++++.+||+.+++|+.++
T Consensus 371 GIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 371 GISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred eeeehhHHHHHHHHHHHhhh
Confidence 34444555555555555433
No 77
>PF15050 SCIMP: SCIMP protein
Probab=47.33 E-value=12 Score=25.72 Aligned_cols=13 Identities=8% Similarity=0.720 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhh
Q 041880 109 VVIGLSIGYMVFS 121 (149)
Q Consensus 109 ~~~~~~~~~~~~~ 121 (149)
+++.+++++++++
T Consensus 17 I~vS~~lglIlyC 29 (133)
T PF15050_consen 17 ILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555544
No 78
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=46.37 E-value=33 Score=25.95 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=13.8
Q ss_pred cccceeeeeeehhhHHHHHHHHHHH
Q 041880 95 WFDWKMAKLGYASGVVIGLSIGYMV 119 (149)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (149)
...+++.+++-++++++.+++.+++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3345666666555556555555554
No 79
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=46.06 E-value=5.8 Score=26.87 Aligned_cols=6 Identities=0% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHh
Q 041880 128 LVKMVE 133 (149)
Q Consensus 128 ~~~~~~ 133 (149)
|..+.+
T Consensus 53 Yk~L~~ 58 (118)
T PF14991_consen 53 YKTLRD 58 (118)
T ss_dssp ------
T ss_pred hhhhhh
Confidence 333333
No 80
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.25 E-value=5.8 Score=31.16 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=3.8
Q ss_pred hHHHHHhhhh
Q 041880 127 WLVKMVERDQ 136 (149)
Q Consensus 127 ~~~~~~~~~~ 136 (149)
|+.+...++|
T Consensus 281 WlyrrRK~sw 290 (295)
T TIGR01478 281 WLYRRRKKSW 290 (295)
T ss_pred HHHHhhcccc
Confidence 4433333333
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.86 E-value=11 Score=32.47 Aligned_cols=35 Identities=34% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCccEEeCCCCcCce--eCCcchhcCCCCCEEEccCC
Q 041880 2 TALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYN 36 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N 36 (149)
+.+..++|++|+|.- .+-+--..-+.|.+|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 467889999999852 11111234567899999999
No 82
>PTZ00370 STEVOR; Provisional
Probab=44.43 E-value=23 Score=27.98 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.8
Q ss_pred cCcchhHH
Q 041880 122 IGRPRWLV 129 (149)
Q Consensus 122 ~~~~~~~~ 129 (149)
+|++.|.+
T Consensus 281 rRK~swkh 288 (296)
T PTZ00370 281 RRKNSWKH 288 (296)
T ss_pred hhcchhHH
Confidence 34445643
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=44.02 E-value=7.1 Score=31.74 Aligned_cols=37 Identities=32% Similarity=0.258 Sum_probs=26.3
Q ss_pred CCccEEeCCCCcCceeCCc----chhcCCCCCEEEccCCcC
Q 041880 2 TALESLDLSFNRLHGRIPE----QLLGVTALASLNLSYNRL 38 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~----~l~~l~~L~~l~ls~N~l 38 (149)
+.|++||||.|.|.-.-+. -|..+++|+.|.|.+|-+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 4688899999988544333 245678888888877654
No 84
>PRK11677 hypothetical protein; Provisional
Probab=43.97 E-value=13 Score=25.91 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=11.5
Q ss_pred ehhhHHHHHHHHHHHhhc
Q 041880 105 YASGVVIGLSIGYMVFSI 122 (149)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ 122 (149)
+++++++|+++++++.+.
T Consensus 6 a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446667777777766553
No 85
>PHA02849 putative transmembrane protein; Provisional
Probab=43.58 E-value=21 Score=22.51 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=10.2
Q ss_pred HHHHHhhhhhhhhhccCCC
Q 041880 128 LVKMVERDQQKKVRRRRPR 146 (149)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (149)
....+.+.+-|...-+.||
T Consensus 43 v~d~~n~iK~kiin~TTRR 61 (82)
T PHA02849 43 VINFLNDMKIKLINLTTRR 61 (82)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4455566655555554444
No 86
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.41 E-value=16 Score=21.66 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=6.8
Q ss_pred ehhhHHHHHHHHHHH
Q 041880 105 YASGVVIGLSIGYMV 119 (149)
Q Consensus 105 ~~~~~~~~~~~~~~~ 119 (149)
+.+++++|++++.++
T Consensus 24 il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 24 ILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 87
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.45 E-value=14 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=15.2
Q ss_pred eeehhhHHHHHHHHHHHhhcCcch
Q 041880 103 LGYASGVVIGLSIGYMVFSIGRPR 126 (149)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~ 126 (149)
..+++|+++|+++++++.+...+.
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchh
Confidence 345667777777777776644433
No 88
>PF15069 FAM163: FAM163 family
Probab=41.26 E-value=37 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=10.6
Q ss_pred eehhhHHHHHHHHHHHhhcCcchhH
Q 041880 104 GYASGVVIGLSIGYMVFSIGRPRWL 128 (149)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
|.+.+.++.+.|++++++ ++-.+|
T Consensus 10 GgILAtVILLcIIaVLCY-CRLQYY 33 (143)
T PF15069_consen 10 GGILATVILLCIIAVLCY-CRLQYY 33 (143)
T ss_pred chHHHHHHHHHHHHHHHH-HhhHHH
Confidence 333444444444444544 444444
No 89
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.34 E-value=43 Score=26.27 Aligned_cols=27 Identities=4% Similarity=-0.133 Sum_probs=20.3
Q ss_pred cccceeeeeeehhhHHHHHHHHHHHhh
Q 041880 95 WFDWKMAKLGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (149)
+.....+++.+.+++.++.++++++..
T Consensus 222 ~~l~~G~VVlIslAiALG~v~ll~l~G 248 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALGTVFLLVLIG 248 (281)
T ss_pred ccccceEEEEEehHHHHHHHHHHHHHH
Confidence 344556777888899999888877766
No 90
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.18 E-value=32 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=15.8
Q ss_pred eeehhhHHHHHHHHHHHhhcCcch
Q 041880 103 LGYASGVVIGLSIGYMVFSIGRPR 126 (149)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~ 126 (149)
+++++|++..++++.++++-++|+
T Consensus 9 ~~~~ag~a~~~flgYciYFD~KRR 32 (148)
T TIGR00985 9 VVIAAGIAAAAFLGYAIYFDYKRR 32 (148)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 345566666777888887755554
No 91
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=36.82 E-value=1.4e+02 Score=23.51 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=6.6
Q ss_pred eeeehhhHHHHHHH
Q 041880 102 KLGYASGVVIGLSI 115 (149)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (149)
+++++.|+++.+++
T Consensus 216 v~g~~~G~~~L~ll 229 (278)
T PF06697_consen 216 VVGVVGGVVLLGLL 229 (278)
T ss_pred EEEehHHHHHHHHH
Confidence 44545555544433
No 92
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=35.34 E-value=44 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHH
Q 041880 106 ASGVVIGLSIGYMV 119 (149)
Q Consensus 106 ~~~~~~~~~~~~~~ 119 (149)
++++++|+++++++
T Consensus 4 ilali~G~~~Gff~ 17 (64)
T PF03672_consen 4 ILALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 93
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=35.18 E-value=13 Score=24.69 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=2.9
Q ss_pred CcchhH
Q 041880 123 GRPRWL 128 (149)
Q Consensus 123 ~~~~~~ 128 (149)
+++.|+
T Consensus 39 KC~~~~ 44 (102)
T PF15176_consen 39 KCPVWY 44 (102)
T ss_pred HhHHHH
Confidence 445553
No 94
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=34.83 E-value=17 Score=29.67 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=17.3
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRL 38 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l 38 (149)
+.|+.|||..|-|+-. +-..+..++.|+.+++++-.+
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 4455555555555321 112334444555555555444
No 95
>PRK01844 hypothetical protein; Provisional
Probab=33.41 E-value=48 Score=20.56 Aligned_cols=12 Identities=25% Similarity=0.933 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 041880 108 GVVIGLSIGYMV 119 (149)
Q Consensus 108 ~~~~~~~~~~~~ 119 (149)
++++|+++++++
T Consensus 13 ~li~G~~~Gff~ 24 (72)
T PRK01844 13 ALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333444333333
No 96
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=33.29 E-value=46 Score=19.94 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHhhcCcchhHHHHHhhhhhhhh
Q 041880 107 SGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKKV 140 (149)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (149)
.++++|++.+-++++...|.-+...++|.|-+.+
T Consensus 16 ~vv~~GvlAlPvMLf~~dRArfYSyLhrvW~KTS 49 (63)
T PF10725_consen 16 FVVLAGVLALPVMLFRSDRARFYSYLHRVWSKTS 49 (63)
T ss_pred HHHHHHHhhhheeeeecchhHHHHHHHHHHHhcC
Confidence 4455555555555554455555566667665443
No 97
>PHA02815 hypothetical protein; Provisional
Probab=32.24 E-value=24 Score=21.08 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=13.2
Q ss_pred cchhHHHHHhhhhhhhhhccCCC
Q 041880 124 RPRWLVKMVERDQQKKVRRRRPR 146 (149)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
+..+.+..+.+.+-|..+-+.||
T Consensus 19 ~wsyv~~~~~~iK~K~in~TTRr 41 (64)
T PHA02815 19 NCFYLFKLFNKIKVKMMNITTKI 41 (64)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Confidence 34445667776666665555444
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.42 E-value=43 Score=15.78 Aligned_cols=11 Identities=45% Similarity=0.374 Sum_probs=6.6
Q ss_pred CCccEEeCCCC
Q 041880 2 TALESLDLSFN 12 (149)
Q Consensus 2 ~~L~~LdLs~N 12 (149)
+.|+.|+|++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666655
No 99
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=28.70 E-value=19 Score=25.96 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=0.0
Q ss_pred eeeeeehhhHHHHHHHH
Q 041880 100 MAKLGYASGVVIGLSIG 116 (149)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (149)
...+++++|+++++.++
T Consensus 129 ~tLVGIIVGVLlaIG~i 145 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFI 145 (162)
T ss_dssp -----------------
T ss_pred eeeeeehhhHHHHHHHH
Confidence 34456666666555444
No 100
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.85 E-value=58 Score=23.67 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=7.0
Q ss_pred ceeeeeeehhhHHHHH
Q 041880 98 WKMAKLGYASGVVIGL 113 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~ 113 (149)
+..++|++-+++++.+
T Consensus 157 ~~~laI~lPvvv~~~~ 172 (189)
T PF14610_consen 157 KYALAIALPVVVVVLA 172 (189)
T ss_pred ceeEEEEccHHHHHHH
Confidence 3344455444444433
No 101
>PRK10132 hypothetical protein; Provisional
Probab=27.56 E-value=43 Score=22.42 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=8.7
Q ss_pred ehhhHHHHHHHHHHHh
Q 041880 105 YASGVVIGLSIGYMVF 120 (149)
Q Consensus 105 ~~~~~~~~~~~~~~~~ 120 (149)
++++..+|+++++++.
T Consensus 90 vgiaagvG~llG~Ll~ 105 (108)
T PRK10132 90 VGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445556666666553
No 102
>PRK00523 hypothetical protein; Provisional
Probab=26.60 E-value=74 Score=19.75 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.3
Q ss_pred chhHHH
Q 041880 125 PRWLVK 130 (149)
Q Consensus 125 ~~~~~~ 130 (149)
|+++.+
T Consensus 27 rk~~~k 32 (72)
T PRK00523 27 KKMFKK 32 (72)
T ss_pred HHHHHH
Confidence 344333
No 103
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=26.25 E-value=98 Score=19.85 Aligned_cols=20 Identities=0% Similarity=0.135 Sum_probs=9.2
Q ss_pred eeeeehhhHHHHHHHHHHHh
Q 041880 101 AKLGYASGVVIGLSIGYMVF 120 (149)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ 120 (149)
+++++-+++.+.+++.+++.
T Consensus 38 IVI~FWv~LA~FV~~lF~iL 57 (90)
T PF15183_consen 38 IVIAFWVSLAAFVVFLFLIL 57 (90)
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 34444445554444444443
No 104
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.23 E-value=30 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=11.7
Q ss_pred eeeeeeehhhHHHHHHHHHHHhh
Q 041880 99 KMAKLGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~ 121 (149)
.++++..++++++++++..++++
T Consensus 99 ~Yia~~~il~il~~i~is~~~~~ 121 (139)
T PHA03099 99 SYIPSPGIVLVLVGIIITCCLLS 121 (139)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555444
No 105
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=25.90 E-value=85 Score=18.35 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=15.4
Q ss_pred ccceeeeeeehhhHHHHHHHHHHH
Q 041880 96 FDWKMAKLGYASGVVIGLSIGYMV 119 (149)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~ 119 (149)
.+..+.+++.++|+.+...++.+-
T Consensus 18 id~KYa~IGtalGvaisAgFLaLK 41 (61)
T PF14986_consen 18 IDIKYAIIGTALGVAISAGFLALK 41 (61)
T ss_pred eeeeeeeehhHHHHHHHHHHHHHH
Confidence 456677777777776666555543
No 106
>PF10857 DUF2701: Protein of unknown function (DUF2701); InterPro: IPR022586 This entry represents viral proteins with unknown function. The entry contains ORF C51 from Swinepox virus (strain Kasza).
Probab=25.80 E-value=43 Score=20.14 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhhhhccCCC
Q 041880 128 LVKMVERDQQKKVRRRRPR 146 (149)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (149)
....+.+.+-+...-+.||
T Consensus 24 v~~~~n~iK~kiin~TtRR 42 (63)
T PF10857_consen 24 VKDACNDIKTKIINATTRR 42 (63)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 3444555554444444433
No 107
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.22 E-value=26 Score=29.13 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=16.1
Q ss_pred eeeehhhHHHHHHHHHHHhhcCcchhHHHHHhh
Q 041880 102 KLGYASGVVIGLSIGYMVFSIGRPRWLVKMVER 134 (149)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (149)
++++.+++++..++++++...+...|.....++
T Consensus 71 fvaflvslVL~~l~~f~l~r~~~l~~~~l~r~r 103 (429)
T PF12297_consen 71 FVAFLVSLVLTWLCFFLLARTRCLQGRPLTRQR 103 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccchhhhc
Confidence 344444555544445555555555565444333
No 108
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.03 E-value=1e+02 Score=21.76 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=14.4
Q ss_pred eehhhHHHHHHHHHHHhhcCcch
Q 041880 104 GYASGVVIGLSIGYMVFSIGRPR 126 (149)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~ 126 (149)
+++.++...++++.++++..+|+
T Consensus 12 vI~agiag~af~gYciYFd~KRr 34 (143)
T KOG4056|consen 12 VIAAGIAGLAFIGYCIYFDKKRR 34 (143)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 44556666667777777755554
No 109
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=24.77 E-value=68 Score=26.14 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=5.1
Q ss_pred ehhhHHHHHHHHH
Q 041880 105 YASGVVIGLSIGY 117 (149)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (149)
+++++++.+++++
T Consensus 312 IiaSiIAIvvIVL 324 (353)
T TIGR01477 312 IIASIIAILIIVL 324 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 110
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=24.39 E-value=43 Score=21.45 Aligned_cols=24 Identities=8% Similarity=-0.081 Sum_probs=10.9
Q ss_pred ceeeeeeehhhHHHHHHHHHHHhh
Q 041880 98 WKMAKLGYASGVVIGLSIGYMVFS 121 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~ 121 (149)
|..+.++.+++++++.+.+.+++.
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~ 39 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLY 39 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHh
Confidence 333333444455555555444444
No 111
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=24.25 E-value=1.8e+02 Score=19.92 Aligned_cols=9 Identities=11% Similarity=-0.101 Sum_probs=3.9
Q ss_pred HhhcCcchh
Q 041880 119 VFSIGRPRW 127 (149)
Q Consensus 119 ~~~~~~~~~ 127 (149)
+..+++|+|
T Consensus 106 LLrR~cRr~ 114 (126)
T PF03229_consen 106 LLRRCCRRA 114 (126)
T ss_pred HHHHHHHHH
Confidence 334344444
No 112
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=23.01 E-value=89 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.9
Q ss_pred ehhhHHHHHHHHHHHhh
Q 041880 105 YASGVVIGLSIGYMVFS 121 (149)
Q Consensus 105 ~~~~~~~~~~~~~~~~~ 121 (149)
.+.|+++++++.++++.
T Consensus 33 ~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 33 TGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HhhhhhHHHHHHHHHHc
Confidence 34455566555555543
No 113
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.63 E-value=1.2e+02 Score=18.35 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=8.4
Q ss_pred eehhhHHHHHHHHHHH
Q 041880 104 GYASGVVIGLSIGYMV 119 (149)
Q Consensus 104 ~~~~~~~~~~~~~~~~ 119 (149)
++++|.++++++++++
T Consensus 4 g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555444
No 114
>PRK10404 hypothetical protein; Provisional
Probab=20.35 E-value=68 Score=21.13 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=7.8
Q ss_pred ehhhHHHHHHHHHHH
Q 041880 105 YASGVVIGLSIGYMV 119 (149)
Q Consensus 105 ~~~~~~~~~~~~~~~ 119 (149)
++++..+|+++++++
T Consensus 84 vGiaagvGlllG~Ll 98 (101)
T PRK10404 84 IGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555554
No 115
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=76 Score=23.29 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=17.6
Q ss_pred ceeeeeeehhhHHHHHHHHHHHhhcCcchhHHHHHhhh
Q 041880 98 WKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERD 135 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
|..+..+..+|.++...++.++++ ...+|....|..+
T Consensus 135 w~P~l~pm~vgav~~~a~~~ll~y-~~~r~~v~~f~~r 171 (184)
T COG3216 135 WGPVLKPMLVGAVPAGAIGGLLFY-GLTRYSVTRFRER 171 (184)
T ss_pred cchHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 444445555555555555555544 2334444444433
No 116
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.25 E-value=20 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=10.2
Q ss_pred eeehhhHHHHHH-HHHHHhhcCcchh
Q 041880 103 LGYASGVVIGLS-IGYMVFSIGRPRW 127 (149)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 127 (149)
++|..++++.++ ++++++++|+++|
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344443333333 3333334355544
Done!