Query 041880
Match_columns 149
No_of_seqs 193 out of 2264
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.5 2E-14 7E-19 123.1 5.8 72 1-73 679-750 (768)
2 1ogq_A PGIP-2, polygalacturona 99.1 1.2E-10 4.1E-15 89.9 5.4 70 1-71 243-312 (313)
3 3j0a_A TOLL-like receptor 5; m 98.9 2.2E-09 7.7E-14 92.8 6.4 60 2-65 504-563 (844)
4 3rgz_A Protein brassinosteroid 98.5 5.9E-08 2E-12 83.1 4.6 44 2-45 656-699 (768)
5 2ifg_A High affinity nerve gro 98.5 2.4E-07 8.3E-12 71.8 6.9 63 1-63 55-117 (347)
6 3g39_A Variable lymphocyte rec 98.4 8.5E-07 2.9E-11 62.5 6.6 41 3-43 31-71 (170)
7 1w8a_A SLIT protein; signaling 98.4 6E-07 2.1E-11 64.4 5.9 43 2-44 54-96 (192)
8 2r9u_A Variable lymphocyte rec 98.3 1.3E-06 4.5E-11 61.9 6.5 58 2-59 33-91 (174)
9 2v70_A SLIT-2, SLIT homolog 2 98.3 1.2E-06 4.1E-11 64.2 5.9 43 2-44 81-123 (220)
10 4g8a_A TOLL-like receptor 4; l 98.2 1.7E-06 5.7E-11 71.2 6.4 63 2-64 518-582 (635)
11 2wfh_A SLIT homolog 2 protein 98.2 2.8E-06 9.7E-11 61.0 6.0 42 2-43 54-95 (193)
12 2o6r_A Variable lymphocyte rec 98.2 3.9E-06 1.3E-10 59.0 6.5 59 1-59 51-110 (177)
13 1w8a_A SLIT protein; signaling 98.2 2.3E-06 7.8E-11 61.3 5.2 43 3-45 30-73 (192)
14 2v9t_B SLIT homolog 2 protein 98.2 3E-06 1E-10 62.0 6.0 42 2-44 80-122 (220)
15 2r9u_A Variable lymphocyte rec 98.1 4.1E-06 1.4E-10 59.3 6.0 62 2-63 57-119 (174)
16 3rw6_A Nuclear RNA export fact 98.1 1.8E-06 6.2E-11 65.8 4.3 62 1-64 169-234 (267)
17 3g39_A Variable lymphocyte rec 98.1 5.1E-06 1.7E-10 58.4 6.0 64 1-64 53-117 (170)
18 2ifg_A High affinity nerve gro 98.1 3.7E-06 1.3E-10 65.0 5.6 58 2-59 31-90 (347)
19 3e6j_A Variable lymphocyte rec 98.1 6.2E-06 2.1E-10 60.6 6.5 41 2-43 88-128 (229)
20 4fcg_A Uncharacterized protein 98.1 6.4E-06 2.2E-10 63.7 6.8 43 2-45 206-248 (328)
21 3rfs_A Internalin B, repeat mo 98.1 8.7E-06 3E-10 61.1 6.8 40 2-41 133-172 (272)
22 2o6s_A Variable lymphocyte rec 98.0 1.3E-05 4.4E-10 57.6 6.8 42 2-43 76-117 (208)
23 3v47_A TOLL-like receptor 5B a 98.0 1.1E-05 3.9E-10 64.2 7.1 39 2-40 347-385 (455)
24 3m19_A Variable lymphocyte rec 98.0 1.1E-05 3.9E-10 59.7 6.4 42 2-43 107-148 (251)
25 1ogq_A PGIP-2, polygalacturona 98.0 4.2E-06 1.4E-10 64.2 3.9 45 1-45 124-168 (313)
26 4fcg_A Uncharacterized protein 98.0 8.3E-06 2.8E-10 63.1 5.2 62 1-62 228-290 (328)
27 2ell_A Acidic leucine-rich nuc 97.9 6.4E-06 2.2E-10 57.3 3.8 39 2-40 71-109 (168)
28 1dce_A Protein (RAB geranylger 97.9 1E-05 3.5E-10 67.4 5.5 57 1-59 462-518 (567)
29 2z63_A TOLL-like receptor 4, v 97.9 2E-05 6.7E-10 64.4 7.1 43 2-44 445-488 (570)
30 2wfh_A SLIT homolog 2 protein 97.9 1.7E-05 5.9E-10 56.8 5.9 57 2-59 31-88 (193)
31 1dce_A Protein (RAB geranylger 97.9 9.8E-06 3.3E-10 67.5 5.1 40 3-45 442-481 (567)
32 3oja_A Leucine-rich immune mol 97.9 9E-06 3.1E-10 66.3 4.7 62 1-64 190-252 (487)
33 2v70_A SLIT-2, SLIT homolog 2 97.9 1.9E-05 6.6E-10 57.6 6.1 59 1-59 56-115 (220)
34 3vq2_A TLR4, TOLL-like recepto 97.9 1.3E-05 4.4E-10 66.2 5.7 42 2-43 473-514 (606)
35 2o6r_A Variable lymphocyte rec 97.9 2.3E-05 7.9E-10 54.9 6.2 58 2-59 28-86 (177)
36 4eco_A Uncharacterized protein 97.9 1.2E-05 4.1E-10 67.5 5.2 59 1-59 205-283 (636)
37 2je0_A Acidic leucine-rich nuc 97.9 5.7E-06 2E-10 56.4 2.6 41 2-44 42-82 (149)
38 1ozn_A Reticulon 4 receptor; N 97.9 1.2E-05 4E-10 60.5 4.3 43 2-44 153-195 (285)
39 2v9t_B SLIT homolog 2 protein 97.9 3.1E-05 1.1E-09 56.5 6.4 39 2-40 56-94 (220)
40 2z66_A Variable lymphocyte rec 97.8 2.8E-05 9.5E-10 58.9 6.1 59 1-59 174-233 (306)
41 4eco_A Uncharacterized protein 97.8 2.5E-05 8.6E-10 65.6 6.4 58 1-59 512-576 (636)
42 2z81_A CD282 antigen, TOLL-lik 97.8 2.6E-05 9E-10 63.5 6.3 62 1-64 450-512 (549)
43 3zyj_A Leucine-rich repeat-con 97.8 3.5E-05 1.2E-09 61.6 6.4 63 2-64 231-294 (440)
44 4glp_A Monocyte differentiatio 97.8 2.4E-05 8.1E-10 59.7 5.1 42 2-44 224-268 (310)
45 2je0_A Acidic leucine-rich nuc 97.8 3.5E-05 1.2E-09 52.4 5.5 57 2-59 17-74 (149)
46 2ell_A Acidic leucine-rich nuc 97.8 3.2E-05 1.1E-09 53.7 5.3 57 2-59 24-81 (168)
47 3zyi_A Leucine-rich repeat-con 97.8 3.9E-05 1.3E-09 61.5 6.4 63 2-64 242-305 (452)
48 4ezg_A Putative uncharacterize 97.8 1.9E-05 6.4E-10 56.5 3.8 44 1-44 87-130 (197)
49 2o6s_A Variable lymphocyte rec 97.8 5.1E-05 1.7E-09 54.4 6.2 59 1-59 51-110 (208)
50 3m19_A Variable lymphocyte rec 97.8 4.9E-05 1.7E-09 56.2 6.1 40 2-41 59-98 (251)
51 2o6q_A Variable lymphocyte rec 97.7 7E-05 2.4E-09 56.0 6.6 43 1-43 132-174 (270)
52 4g8a_A TOLL-like receptor 4; l 97.7 3.7E-05 1.3E-09 63.1 5.5 44 1-44 493-536 (635)
53 1a9n_A U2A', U2A'; complex (nu 97.7 3.6E-05 1.2E-09 54.0 4.7 37 3-41 43-79 (176)
54 3t6q_A CD180 antigen; protein- 97.7 1.7E-05 5.7E-10 65.5 3.4 44 1-44 475-518 (606)
55 1p9a_G Platelet glycoprotein I 97.7 7.2E-05 2.5E-09 56.8 6.7 39 2-40 124-162 (290)
56 4ecn_A Leucine-rich repeat pro 97.7 2.2E-05 7.6E-10 68.6 4.2 45 1-45 447-510 (876)
57 3e6j_A Variable lymphocyte rec 97.7 6.5E-05 2.2E-09 55.1 6.0 40 2-41 40-79 (229)
58 4b8c_D Glucose-repressible alc 97.7 3.6E-05 1.2E-09 65.9 5.0 39 3-43 248-286 (727)
59 3rfs_A Internalin B, repeat mo 97.7 8.4E-05 2.9E-09 55.7 6.2 59 1-59 108-167 (272)
60 2z7x_B TOLL-like receptor 1, v 97.7 4.1E-05 1.4E-09 62.1 4.8 44 1-45 44-87 (520)
61 1wwl_A Monocyte differentiatio 97.6 2.6E-05 9E-10 59.6 3.3 57 1-59 227-284 (312)
62 2id5_A Lingo-1, leucine rich r 97.6 5E-05 1.7E-09 61.0 5.1 63 2-64 272-335 (477)
63 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 8.5E-05 2.9E-09 61.1 6.4 61 2-64 450-512 (562)
64 2z7x_B TOLL-like receptor 1, v 97.6 9E-05 3.1E-09 60.1 6.5 60 2-63 421-482 (520)
65 4b8c_D Glucose-repressible alc 97.6 6.4E-05 2.2E-09 64.3 5.8 57 1-59 269-326 (727)
66 4fmz_A Internalin; leucine ric 97.6 3.6E-05 1.2E-09 59.2 3.9 40 2-43 265-304 (347)
67 1wwl_A Monocyte differentiatio 97.6 5.1E-05 1.7E-09 58.0 4.7 59 1-59 200-263 (312)
68 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 6.5E-05 2.2E-09 61.7 5.5 56 2-59 76-131 (562)
69 4ezg_A Putative uncharacterize 97.6 9.5E-05 3.2E-09 52.7 5.6 59 1-59 111-169 (197)
70 4ecn_A Leucine-rich repeat pro 97.6 0.0001 3.5E-09 64.5 6.3 58 1-59 752-816 (876)
71 2z80_A TOLL-like receptor 2, v 97.6 4.4E-05 1.5E-09 59.1 3.6 62 2-64 222-316 (353)
72 1ziw_A TOLL-like receptor 3; i 97.6 3.6E-05 1.2E-09 64.4 3.3 38 2-40 536-574 (680)
73 1jl5_A Outer protein YOPM; leu 97.6 2.2E-05 7.4E-10 63.5 1.8 40 2-45 337-378 (454)
74 4glp_A Monocyte differentiatio 97.5 8.7E-05 3E-09 56.6 5.0 54 2-60 251-305 (310)
75 2ft3_A Biglycan; proteoglycan, 97.5 0.00015 5.2E-09 55.6 6.1 43 1-44 77-119 (332)
76 2ft3_A Biglycan; proteoglycan, 97.5 0.00018 6.2E-09 55.1 6.5 58 1-59 216-274 (332)
77 3j0a_A TOLL-like receptor 5; m 97.5 0.00011 3.8E-09 63.4 5.8 45 1-45 72-116 (844)
78 2z66_A Variable lymphocyte rec 97.5 0.00013 4.4E-09 55.2 5.5 59 1-59 149-209 (306)
79 3v47_A TOLL-like receptor 5B a 97.5 0.00012 4.1E-09 58.2 5.5 43 2-44 299-341 (455)
80 3vq2_A TLR4, TOLL-like recepto 97.5 8.5E-05 2.9E-09 61.3 4.8 43 2-44 448-491 (606)
81 3oja_A Leucine-rich immune mol 97.5 7.5E-05 2.6E-09 60.8 4.1 40 2-41 144-184 (487)
82 1p9a_G Platelet glycoprotein I 97.5 0.00019 6.6E-09 54.4 6.1 41 2-43 77-117 (290)
83 3o53_A Protein LRIM1, AGAP0063 97.5 0.00012 4.2E-09 56.0 4.9 61 1-63 190-251 (317)
84 1xku_A Decorin; proteoglycan, 97.5 0.00018 6.2E-09 55.0 5.9 38 2-39 76-113 (330)
85 3oja_B Anopheles plasmodium-re 97.5 0.00012 4.1E-09 60.8 5.1 40 1-40 253-292 (597)
86 2xot_A Amphoterin-induced prot 97.4 0.00018 6.1E-09 56.1 5.5 42 2-43 64-105 (361)
87 1xku_A Decorin; proteoglycan, 97.4 0.0005 1.7E-08 52.5 8.0 41 3-43 193-233 (330)
88 2z62_A TOLL-like receptor 4, v 97.4 0.0003 1E-08 52.5 6.5 38 3-40 77-114 (276)
89 1ozn_A Reticulon 4 receptor; N 97.4 0.00026 8.8E-09 53.1 6.2 42 2-43 80-122 (285)
90 1a9n_A U2A', U2A'; complex (nu 97.4 9.6E-05 3.3E-09 51.8 3.6 38 2-41 19-57 (176)
91 3o6n_A APL1; leucine-rich repe 97.4 0.00016 5.4E-09 56.6 5.2 39 2-40 248-286 (390)
92 2z81_A CD282 antigen, TOLL-lik 97.4 0.00011 3.6E-09 59.9 4.2 40 3-42 51-90 (549)
93 3oja_B Anopheles plasmodium-re 97.4 0.00025 8.6E-09 58.9 6.4 43 2-44 75-117 (597)
94 3zyi_A Leucine-rich repeat-con 97.4 0.00027 9.2E-09 56.5 6.2 40 2-41 99-138 (452)
95 2xot_A Amphoterin-induced prot 97.4 0.00022 7.4E-09 55.6 5.3 44 1-44 87-130 (361)
96 2z80_A TOLL-like receptor 2, v 97.4 0.00016 5.4E-09 55.9 4.3 39 2-40 76-114 (353)
97 2xwt_C Thyrotropin receptor; s 97.3 0.00019 6.5E-09 52.5 4.2 38 2-39 55-94 (239)
98 2id5_A Lingo-1, leucine rich r 97.3 0.0004 1.4E-08 55.7 6.3 39 2-40 56-94 (477)
99 2o6q_A Variable lymphocyte rec 97.3 0.00045 1.6E-08 51.5 6.2 43 2-44 85-127 (270)
100 3zyj_A Leucine-rich repeat-con 97.3 0.00031 1.1E-08 56.0 5.5 43 2-44 207-249 (440)
101 3t6q_A CD180 antigen; protein- 97.3 0.0003 1E-08 58.0 5.5 42 2-43 57-98 (606)
102 3o53_A Protein LRIM1, AGAP0063 97.3 7.6E-05 2.6E-09 57.1 1.6 42 2-43 34-75 (317)
103 2z62_A TOLL-like receptor 4, v 97.3 0.00042 1.4E-08 51.6 5.5 42 2-43 52-93 (276)
104 1xeu_A Internalin C; cellular 97.3 0.00046 1.6E-08 51.6 5.7 37 2-40 63-99 (263)
105 1m9s_A Internalin B; cell inva 97.3 0.00023 7.7E-09 59.8 4.4 37 2-40 153-189 (605)
106 3cvr_A Invasion plasmid antige 97.2 0.00034 1.1E-08 58.5 5.3 15 26-40 140-154 (571)
107 1h6t_A Internalin B; cell adhe 97.2 0.00025 8.6E-09 53.8 4.2 40 2-43 134-173 (291)
108 1xeu_A Internalin C; cellular 97.2 0.00044 1.5E-08 51.7 5.5 38 2-41 128-165 (263)
109 3o6n_A APL1; leucine-rich repe 97.2 0.0006 2E-08 53.3 6.4 42 2-43 69-110 (390)
110 2z63_A TOLL-like receptor 4, v 97.2 0.00035 1.2E-08 56.9 4.7 64 1-64 469-533 (570)
111 1ziw_A TOLL-like receptor 3; i 97.1 0.00069 2.4E-08 56.6 6.2 41 3-43 98-138 (680)
112 3g06_A SSPH2 (leucine-rich rep 97.1 0.0002 6.8E-09 60.4 2.6 40 3-43 262-301 (622)
113 1h6t_A Internalin B; cell adhe 97.0 0.00079 2.7E-08 51.0 5.2 37 2-40 112-148 (291)
114 1ds9_A Outer arm dynein; leuci 97.0 0.00015 5.3E-09 51.6 1.2 36 2-39 48-83 (198)
115 1m9s_A Internalin B; cell inva 97.0 0.00072 2.5E-08 56.7 5.2 41 1-43 130-170 (605)
116 3cvr_A Invasion plasmid antige 97.0 0.00093 3.2E-08 55.8 5.7 38 2-44 140-177 (571)
117 1jl5_A Outer protein YOPM; leu 97.0 0.00099 3.4E-08 53.7 5.6 40 2-44 131-170 (454)
118 2xwt_C Thyrotropin receptor; s 96.9 0.0011 3.8E-08 48.3 5.1 40 1-41 154-195 (239)
119 3bz5_A Internalin-J, INLJ; leu 96.9 0.0014 4.6E-08 53.0 5.7 39 2-43 212-250 (457)
120 1ds9_A Outer arm dynein; leuci 96.9 0.00012 4.1E-09 52.2 -0.5 57 2-59 18-80 (198)
121 1h6u_A Internalin H; cell adhe 96.9 0.00093 3.2E-08 50.9 4.4 37 2-40 151-187 (308)
122 3rw6_A Nuclear RNA export fact 96.8 0.00085 2.9E-08 50.9 3.7 42 1-44 195-238 (267)
123 1o6v_A Internalin A; bacterial 96.8 0.0012 4E-08 53.0 4.7 37 2-40 309-345 (466)
124 4ay9_X Follicle-stimulating ho 96.8 0.00095 3.2E-08 51.7 3.9 43 2-45 30-73 (350)
125 1o6v_A Internalin A; bacterial 96.8 0.0014 4.8E-08 52.6 4.9 40 2-43 287-326 (466)
126 1h6u_A Internalin H; cell adhe 96.7 0.0018 6.3E-08 49.3 5.0 37 2-40 107-143 (308)
127 3bz5_A Internalin-J, INLJ; leu 96.7 0.0031 1E-07 50.9 6.5 37 3-43 192-228 (457)
128 2ca6_A RAN GTPase-activating p 96.5 0.00084 2.9E-08 52.4 2.0 39 2-40 244-288 (386)
129 3rfe_A Platelet glycoprotein I 96.4 0.0033 1.1E-07 42.3 4.2 56 6-64 12-70 (130)
130 3g06_A SSPH2 (leucine-rich rep 96.4 0.0037 1.3E-07 52.6 5.3 37 3-44 242-278 (622)
131 2ca6_A RAN GTPase-activating p 96.4 0.0012 4E-08 51.6 2.0 38 3-40 217-258 (386)
132 4fmz_A Internalin; leucine ric 96.2 0.0056 1.9E-07 46.7 4.8 37 2-40 66-102 (347)
133 2ast_B S-phase kinase-associat 96.2 0.0016 5.5E-08 49.5 1.7 33 4-36 120-152 (336)
134 2ast_B S-phase kinase-associat 96.1 0.0064 2.2E-07 46.1 4.6 36 2-37 222-258 (336)
135 3goz_A Leucine-rich repeat-con 96.0 0.0018 6.3E-08 50.2 1.3 36 4-39 53-93 (362)
136 1z7x_W Ribonuclease inhibitor; 95.9 0.0026 8.9E-08 50.4 1.7 39 2-40 341-384 (461)
137 3goz_A Leucine-rich repeat-con 95.5 0.0037 1.3E-07 48.4 1.3 41 2-42 80-125 (362)
138 4ay9_X Follicle-stimulating ho 95.5 0.015 5.2E-07 44.8 4.6 38 3-40 178-216 (350)
139 3rfe_A Platelet glycoprotein I 94.8 0.052 1.8E-06 36.3 5.2 36 3-39 32-68 (130)
140 2ra8_A Uncharacterized protein 94.7 0.0088 3E-07 47.1 1.3 40 1-40 251-293 (362)
141 3ogk_B Coronatine-insensitive 94.7 0.012 4E-07 48.1 2.0 39 2-40 463-502 (592)
142 1z7x_W Ribonuclease inhibitor; 94.5 0.014 4.9E-07 46.0 2.1 38 2-39 256-297 (461)
143 3un9_A NLR family member X1; l 94.3 0.022 7.4E-07 44.8 2.6 38 2-39 155-196 (372)
144 3un9_A NLR family member X1; l 94.2 0.021 7.2E-07 44.9 2.3 39 2-40 183-225 (372)
145 3ogk_B Coronatine-insensitive 93.8 0.019 6.7E-07 46.8 1.4 40 2-41 488-528 (592)
146 1io0_A Tropomodulin; LRR prote 93.3 0.051 1.7E-06 38.2 2.9 39 2-40 65-107 (185)
147 1io0_A Tropomodulin; LRR prote 93.3 0.038 1.3E-06 38.9 2.2 39 2-40 36-79 (185)
148 2p1m_B Transport inhibitor res 92.2 0.04 1.4E-06 44.8 1.1 39 2-40 456-495 (594)
149 2ra8_A Uncharacterized protein 90.7 0.066 2.2E-06 42.0 0.9 40 1-40 218-266 (362)
150 2p1m_B Transport inhibitor res 87.8 0.53 1.8E-05 38.1 4.3 36 2-37 156-195 (594)
151 3sb4_A Hypothetical leucine ri 86.1 0.76 2.6E-05 34.7 4.1 40 2-44 226-266 (329)
152 1pgv_A TMD-1, tropomodulin TMD 83.9 0.54 1.8E-05 33.8 2.2 37 3-39 42-83 (197)
153 3e4g_A ATP synthase subunit S, 80.8 1 3.5E-05 31.7 2.6 35 3-37 62-96 (176)
154 3sb4_A Hypothetical leucine ri 74.7 2.9 9.9E-05 31.4 3.8 37 1-39 100-137 (329)
155 1pgv_A TMD-1, tropomodulin TMD 69.8 2.4 8.4E-05 30.3 2.2 39 2-40 70-112 (197)
156 3e4g_A ATP synthase subunit S, 59.5 2.2 7.5E-05 30.0 0.3 36 1-36 84-124 (176)
157 2k1k_A Ephrin type-A receptor 57.1 2.4 8.1E-05 22.2 0.1 10 104-113 15-24 (38)
158 4fdw_A Leucine rich hypothetic 53.8 12 0.00042 29.2 3.8 31 2-33 180-210 (401)
159 2knc_A Integrin alpha-IIB; tra 40.6 26 0.0009 19.6 2.8 9 128-136 35-43 (54)
160 4h09_A Hypothetical leucine ri 28.6 61 0.0021 24.3 4.1 14 23-36 283-296 (379)
161 4fdw_A Leucine rich hypothetic 27.5 71 0.0024 24.7 4.3 36 3-39 158-193 (401)
162 2l8s_A Integrin alpha-1; trans 25.8 44 0.0015 18.7 2.0 7 129-135 33-39 (54)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=2e-14 Score=123.13 Aligned_cols=72 Identities=43% Similarity=0.759 Sum_probs=66.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSN 73 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~ 73 (149)
++.|+.|||++|+|+|.||..+..++.|++||+++|+|+|+||...+|.++...+|.||++|||.|+. .|..
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999876 7764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.07 E-value=1.2e-10 Score=89.93 Aligned_cols=70 Identities=43% Similarity=0.783 Sum_probs=63.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTC 71 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c 71 (149)
+++|+.|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 36899999999999999999999999999999999999999999877788888889999999998764 35
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=92.77 Aligned_cols=60 Identities=30% Similarity=0.312 Sum_probs=35.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGE 65 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~ 65 (149)
++|+.|||++|+|++-.|..+. ++|+.||+++|+++|.+|.. +..+....+.||+..|..
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence 4556666666666554333333 55666666666666666653 345556667888888843
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.53 E-value=5.9e-08 Score=83.12 Aligned_cols=44 Identities=39% Similarity=0.624 Sum_probs=29.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
+.|+.|||++|+|+|.||..+++++.|+.||+++|+++|.||..
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 45666666666666666666666666666666666666666654
No 5
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.4e-07 Score=71.75 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCcc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lc 63 (149)
|++|+.|||++|+|+|..|..+.+++.|+.|+|++|+|++..|.......+....+.+|+.-|
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 467888888888888888888888888888888888888654443222224444455665444
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=8.5e-07 Score=62.52 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=25.2
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
.|+.|+|++|+|++..|..+..++.|+.|+|++|++++..|
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence 45666666666666556666666666666666666664433
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.36 E-value=6e-07 Score=64.38 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+.|+.|||++|+|++.+|..+..++.|+.|++++|++++..|.
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 4566666666666666666666666666666666666665543
No 8
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.31 E-value=1.3e-06 Score=61.86 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
+.|+.|+|++|+|++..|..+..++.|+.|+|++|+|++..+.. ..+..+....+.+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46788888888888877888888888888888888888744432 22334444445555
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=64.18 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|.|++..|..+..++.|++|++++|++++..|.
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 4566666666666655555566666666666666666655553
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.23 E-value=1.7e-06 Score=71.19 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc-c-cCCCccccccccCccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ-F-NTFDNDSYIGNIHLCG 64 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~-~-~~~~~~~~~gn~~lcg 64 (149)
++|+.|+|++|+|++-.|..+..+++|+.||+++|++++..|.... + ..+....+.+|+.-|.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 4556666666666655555566666666666666666666555422 1 2344455677776664
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.18 E-value=2.8e-06 Score=61.03 Aligned_cols=42 Identities=40% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|.|++-.|..+..++.|+.|++++|++++..|
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 456666666666665555566666666666666666666554
No 12
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.17 E-value=3.9e-06 Score=58.97 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
+++|++|+|++|+|++..|..+..++.|+.|++++|++++..|.. ..+..+....+.+|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 367888999999998655556788889999999999988766543 22334444445555
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.17 E-value=2.3e-06 Score=61.32 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=32.7
Q ss_pred CccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
.|+.|+|++|++++..|. .+..++.|++|++++|++++.+|..
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence 577888888888765554 3778888888888888888877754
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.17 E-value=3e-06 Score=62.00 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|||++|.|+. +|. .+..+++|+.|++++|++++..|.
T Consensus 80 ~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 80 RSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp SSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 456666666666663 333 345566666666666666655443
No 15
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.14 E-value=4.1e-06 Score=59.26 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCcc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLC 63 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lc 63 (149)
++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.. ..+..+....+.+|+.-|
T Consensus 57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 45667777777776533333566777777777777776544331 123344444455554443
No 16
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.8e-06 Score=65.78 Aligned_cols=62 Identities=31% Similarity=0.364 Sum_probs=47.4
Q ss_pred CCCccEEeCCCCcCce--eCCcchhcCCCCCEEEccCCcCCCCCCCCCccc--CCCccccccccCccC
Q 041880 1 MTALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRGRIPRGNQFN--TFDNDSYIGNIHLCG 64 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~--~~~~~~~~gn~~lcg 64 (149)
++.|+.|||++|+|++ .+|..+..+++|+.|+|++|++++. ..-..+. .+....+.||+ +|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence 5789999999999999 8888899999999999999999985 1111122 44455667774 554
No 17
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.11 E-value=5.1e-06 Score=58.45 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=44.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg 64 (149)
+++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.. ..+..+....+.+|+.-|.
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 457888888888888655555678888888888888888755542 2334555556677765554
No 18
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.10 E-value=3.7e-06 Score=65.02 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCccEEeCCC-CcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 2 TALESLDLSF-NRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~-N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
++|+.|+|++ |+|++-.|..+..++.|+.|+|++|+|+|..|.. ..+..+....+.+|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 5699999996 9999888889999999999999999999988764 22334444445555
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.10 E-value=6.2e-06 Score=60.61 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|+|++-.|..+..++.|+.|++++|+++ .+|
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 34555555555555433334455555555555555555 444
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.09 E-value=6.4e-06 Score=63.73 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
++|+.|+|++|.+++ +|..+..+++|+.|++++|++.+.+|..
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence 456666666666663 5555666666666666666666666653
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.06 E-value=8.7e-06 Score=61.10 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=19.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|+|++|++++..|..+..++.|+.|++++|++++.
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 3445555555555543333444455555555555555443
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.02 E-value=1.3e-05 Score=57.60 Aligned_cols=42 Identities=31% Similarity=0.286 Sum_probs=26.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|++|||++|++++..|..+..++.|++|++++|++++..|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 456677777777765444445666777777777776665444
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.02 E-value=1.1e-05 Score=64.16 Aligned_cols=39 Identities=36% Similarity=0.562 Sum_probs=19.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|++++..|..+..++.|++|++++|++++
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 344455555555554444445555555555555555544
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.01 E-value=1.1e-05 Score=59.72 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|+|++|+|++-.|..+..++.|+.|++++|++++..|
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 445555566655554333344555555555555555554433
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.99 E-value=4.2e-06 Score=64.24 Aligned_cols=45 Identities=31% Similarity=0.638 Sum_probs=33.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
+++|++|||++|.++|.+|..+..+++|++|++++|+++|.+|..
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence 356777777777777777777777777777777777777777753
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.96 E-value=8.3e-06 Score=63.09 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHL 62 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l 62 (149)
+++|+.|+|++|++.+.+|..++.++.|+.|++++|++.+.+|... .+..+....+.+|..+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 4689999999999999999999999999999999999999999753 2334444556666433
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.94 E-value=6.4e-06 Score=57.29 Aligned_cols=39 Identities=36% Similarity=0.458 Sum_probs=22.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|.+++.+|..+..++.|+.|++++|++++
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 455556666666655555555555666666666665554
No 28
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=1e-05 Score=67.40 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=43.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
+++|+.|||++|+|+ .||..++.+++|+.|+|++|++++ +|.-..+..+....+.+|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN 518 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence 467889999999998 899999999999999999999988 673333344444455555
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.93 E-value=2e-05 Score=64.36 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|.++ +.+|..+..+++|+.|++++|++++..|.
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 34555555555554 45555555555555555555555555443
No 30
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.92 E-value=1.7e-05 Score=56.85 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=41.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+.|+.|+|++|+|+ .||..+..++.|+.|++++|++++..|... .+..+....+.+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46889999999998 888889999999999999999988666431 2223333444444
No 31
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=9.8e-06 Score=67.54 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=31.8
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
.|+.|+|++|.|++ +|. ++.++.|+.|+|++|+++ .+|..
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh
Confidence 46788888888886 776 888888888888888888 77753
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.91 E-value=9e-06 Score=66.29 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=46.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 64 (149)
+++|+.|||++|.|++ +|..+..++.|+.|++++|++++ +|... .+..+....+.+|+..|+
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 4678889999999986 45568889999999999999986 66542 233555566778877765
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.91 E-value=1.9e-05 Score=57.63 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|.+++..|..+..++.|++|++++|++++..|... .+..+....+.+|
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 4678999999999998877789999999999999999988766421 2233344444455
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.91 E-value=1.3e-05 Score=66.16 Aligned_cols=42 Identities=31% Similarity=0.095 Sum_probs=21.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|++++.+|..+..++.|+.|++++|++++.+|
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 345555555555555555555555555555555555554444
No 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=2.3e-05 Score=54.92 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
++|+.|++++|++++..|..+..++.|++|++++|++++..|.. ..+..+....+.+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57899999999999766667899999999999999998765543 23334444455555
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.89 E-value=1.2e-05 Score=67.53 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCCccEEeCCCCcCcee-----------------CCcchh--cCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGR-----------------IPEQLL--GVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~-----------------iP~~l~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|++|||++|+|+|+ ||..++ +++.|++|++++|++.|.+|... .+..+....+.+|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 46789999999999986 999988 99999999999999999999642 2233333344444
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.88 E-value=5.7e-06 Score=56.40 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|++++|.+++. ..+..++.|++|++++|++++.+|.
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH
Confidence 4566777777777654 5566677777777777777666554
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.86 E-value=1.2e-05 Score=60.49 Aligned_cols=43 Identities=28% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|.+++..+..+..++.|+.|++++|.+++..|.
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 3455555555555543333455555555555555555554443
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.86 E-value=3.1e-05 Score=56.51 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=28.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++..|..+..++.|++|+|++|+++.
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 467777777777777667777777777777777777774
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.84 E-value=2.8e-05 Score=58.94 Aligned_cols=59 Identities=25% Similarity=0.229 Sum_probs=41.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
+++|+.|||++|.+++..|..+..++.|+.|++++|++++..+.. ..+..+....+.+|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 357888888888888888888888888888888888887754422 11223334444555
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.84 E-value=2.5e-05 Score=65.55 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=42.1
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEc------cCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNL------SYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~l------s~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|+.|||++|+|++ ||..+..++.|+.|++ ++|++.+.+|... .+..+....+.+|
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 4678888888888887 8888888888888888 4577888888653 2233444445555
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.83 E-value=2.6e-05 Score=63.49 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg 64 (149)
+++|+.|||++|+|+ .||. ...++.|+.|++++|++++.+|.. ..+..+....+.+|+..|.
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 356777777777777 6776 466778888888888888776653 2334445555667765554
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.80 E-value=3.5e-05 Score=61.55 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg 64 (149)
++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+.. ..+..+....+.+|+..|.
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 34555555555555555555556666666666666666543332 1223444455677776664
No 44
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.80 E-value=2.4e-05 Score=59.71 Aligned_cols=42 Identities=38% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcC---CCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGV---TALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l---~~L~~l~ls~N~l~G~iP~ 44 (149)
++|++|||++|+|++.+|..+..+ +.|+.|++++|+++ .+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 345555555555555555444444 35555555555555 4444
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.79 E-value=3.5e-05 Score=52.38 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
++|+.|++++|.++ |.+|..+..++.|+.|++++|++++. +.-..+..+....+.+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC
Confidence 46899999999999 99999999999999999999999886 33223334444444444
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.79 E-value=3.2e-05 Score=53.68 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=41.9
Q ss_pred CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
+.|+.|+|++|+++ |.+|..+..++.|+.|++++|.+++. +.-..+..+....+.+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC
Confidence 56889999999998 88998888899999999999988876 33223334444444444
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.78 E-value=3.9e-05 Score=61.50 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=33.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 64 (149)
++|+.|+|++|++++..|..+..+++|+.|++++|++++..+... .+..+....+.+|+.-|.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 345555555555555555555556666666666666654333221 123344455667765554
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.76 E-value=1.9e-05 Score=56.47 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=36.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++.|+.|++++|.+++..|..+..++.|+.|++++|++++..|.
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence 46788888888888888888888888888888888888876554
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.76 E-value=5.1e-05 Score=54.43 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|++++..+..+..++.|++|++++|++++..+.. ..+..+....+.+|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 467899999999999655556788999999999999998655542 22334444444444
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.75 E-value=4.9e-05 Score=56.21 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|+|++|.|++..|..+..++.|++|++++|++++.
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 3455555555555554444555555555555555555543
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.72 E-value=7e-05 Score=55.98 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+++|+.|+|++|.+++..+..+..++.|+.|++++|++++..|
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 3567777777777775444456777777777777777766444
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.72 E-value=3.7e-05 Score=63.07 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=33.0
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+++|+.|||++|+|++.+|..+..+++|+.|+|++|++++..|.
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 536 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 536 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh
Confidence 35677788888888777777777778888888888877776554
No 53
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.72 E-value=3.6e-05 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=24.7
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
+|+.|||++|.|++- ..+..++.|++|++++|++++.
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc
Confidence 567777777777653 4566667777777777777643
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.72 E-value=1.7e-05 Score=65.51 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=33.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+++|+.|||++|++++.+|..+..++.|+.|++++|++++.+|.
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 35677788888888877777777788888888888877777664
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.72 E-value=7.2e-05 Score=56.83 Aligned_cols=39 Identities=31% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|+|++-.|..+..++.|+.|++++|++++
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 455666666666664444444555666666666666553
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=2.2e-05 Score=68.62 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=36.6
Q ss_pred CCCccEEeCCCCcCce-----------------eCCcchh--cCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHG-----------------RIPEQLL--GVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G-----------------~iP~~l~--~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
|++|+.|||++|+|+| .||..++ ++++|+.|++++|++.|.+|..
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~ 510 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence 4678888888888888 4888877 8888888888888888888853
No 57
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.70 E-value=6.5e-05 Score=55.06 Aligned_cols=40 Identities=25% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|+|++|++++..|..+..++.|+.|++++|++++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 4577788888888877777777777788888887777543
No 58
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.68 E-value=3.6e-05 Score=65.85 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=18.4
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
.|++|+|++|.|+ .||..++.++.|+.|+|++|.|+ .||
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 3444444444444 44444444444444444444444 444
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.66 E-value=8.4e-05 Score=55.66 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=42.4
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|++++..|..+..++.|++|++++|++++..|.. ..+..+....+.+|
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 467889999999998777777888899999999999988766543 22334444444444
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.66 E-value=4.1e-05 Score=62.08 Aligned_cols=44 Identities=27% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
++.|++|||++|++++..|..+..++.|++||+++|+++ .||..
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 87 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH 87 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc
Confidence 356777777777777777777777777777777777776 46654
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.65 E-value=2.6e-05 Score=59.59 Aligned_cols=57 Identities=30% Similarity=0.341 Sum_probs=44.4
Q ss_pred CCCccEEeCCCCcCceeCC-cchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIP-EQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP-~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
+++|+.|||++|.+++.+| ..+..++.|+.|++++|+++ .+|.... ..+....+.+|
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N 284 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYN 284 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSS
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCC
Confidence 4689999999999999886 45667899999999999998 8887643 34444445555
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.65 E-value=5e-05 Score=60.99 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg 64 (149)
++|+.|+|++|++++..|..+..+++|+.|++++|++++..+.. ..+..+....+.+|+..|.
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 45666777777777666777777777777777777777644322 1122334445566655443
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.64 E-value=8.5e-05 Score=61.06 Aligned_cols=61 Identities=28% Similarity=0.472 Sum_probs=39.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccccCccC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn~~lcg 64 (149)
++|+.|||++|+|+ .||..+..++.|+.|++++|+++ .+|.. ..+..+....+.+|+..|.
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 36777777777777 67777777788888888888887 46654 1223344445566665553
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.64 E-value=9e-05 Score=60.07 Aligned_cols=60 Identities=28% Similarity=0.526 Sum_probs=36.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccccCcc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGNIHLC 63 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn~~lc 63 (149)
++|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|.. ..+..+....+.+|+..|
T Consensus 421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 35667777777776 67776667777777777777776 45553 122233444455665544
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.63 E-value=6.4e-05 Score=64.29 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=42.9
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
|++|+.|||++|.|+ .||..++.|+.|++|+|++|.|+ .||... .+..+....+.+|
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 467899999999999 89999999999999999999886 778652 2223333344444
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.63 E-value=3.6e-05 Score=59.20 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=20.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|++++|.+++ + ..+..+++|+.|++++|++.+..|
T Consensus 265 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 265 TKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcCh
Confidence 345555555555554 2 234555555555555555554443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.63 E-value=5.1e-05 Score=57.97 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCCccEEeCCCCcCce--eCCcc-hhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHG--RIPEQ-LLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G--~iP~~-l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|.+++ .+|.. +..++.|+.|++++|++++.+|.. .....+....+.+|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 4689999999999983 45544 357899999999999999987532 22334444455555
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.62 E-value=6.5e-05 Score=61.74 Aligned_cols=56 Identities=27% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
+.|++|||++|++++..|..+..++.|++||+++|+++ .+|.. .+..+....+.+|
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N 131 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSS
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCC
Confidence 56677777777777666666777777777777777766 46654 3333333333333
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.61 E-value=9.5e-05 Score=52.73 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|.+++.+|..+..++.|+.|++++|.+-+.+|.-..+..+....+.+|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 46899999999999998999999999999999999986666764333344444445555
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.0001 Score=64.50 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=43.9
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccC------CcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSY------NRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~------N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|+.|||++|+|++ ||..+..+++|+.|++++ |++.+.+|... .+..+....+.+|
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 4678899999999987 898899999999998876 78888888653 2334444455555
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.57 E-value=4.4e-05 Score=59.13 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=45.1
Q ss_pred CCccEEeCCCCcCce-------------------------------eCCcchhcCCCCCEEEccCCcCCCCCCCCC--cc
Q 041880 2 TALESLDLSFNRLHG-------------------------------RIPEQLLGVTALASLNLSYNRLRGRIPRGN--QF 48 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G-------------------------------~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~--~~ 48 (149)
++|+.|||++|.+++ .+|..+..+++|+.|++++|+++ .+|... .+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 567788888888776 35666788899999999999998 677642 34
Q ss_pred cCCCccccccccCccC
Q 041880 49 NTFDNDSYIGNIHLCG 64 (149)
Q Consensus 49 ~~~~~~~~~gn~~lcg 64 (149)
..+....+.+|+..|.
T Consensus 301 ~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CCCCEEEeeCCCccCc
Confidence 4555566777766554
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.56 E-value=3.6e-05 Score=64.42 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|+++ .||. .+..++.|+.|++++|++++
T Consensus 536 ~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 536 SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCc
Confidence 45666666666666 4554 35666666666666666664
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.56 E-value=2.2e-05 Score=63.52 Aligned_cols=40 Identities=43% Similarity=0.605 Sum_probs=28.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC--CCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG--RIPRG 45 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G--~iP~~ 45 (149)
++|+.||+++|+++ .+|. .+++|++|++++|+++| .+|..
T Consensus 337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 46777777777777 4666 36777777777777777 66654
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.55 E-value=8.7e-05 Score=56.55 Aligned_cols=54 Identities=41% Similarity=0.555 Sum_probs=42.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC-CCCCCCcccCCCcccccccc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG-RIPRGNQFNTFDNDSYIGNI 60 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~gn~ 60 (149)
++|++|+|++|+|+ .||..+. +.|+.||+++|++++ +++. .+..+....+.+|+
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPD--ELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTT--SCCCCSCEECSSTT
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhh--hCCCccEEECcCCC
Confidence 58999999999999 8998885 799999999999998 4543 34455555566663
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.52 E-value=0.00015 Score=55.59 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++.|+.|+|++|.+++..|..+..++.|++|++++|++. .+|.
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 119 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP 119 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCS
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCc
Confidence 356777888888887777777777888888888887776 4554
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.52 E-value=0.00018 Score=55.12 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|.+++..|..+..+++|+.|++++|+++ .+|... .+..+....+.+|
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 357788888888888777777888888888888888887 677642 2223334444444
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=63.43 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
++.|+.|||++|++++..|..+..+++|++|++++|.+++.+|..
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence 356777777777777777777777777777777777777766653
No 78
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.51 E-value=0.00013 Score=55.19 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880 1 MTALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN 59 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 59 (149)
+++|+.|+|++|.+++ .+|..+..++.|+.|++++|++++..|... .+..+....+.+|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 4689999999999998 689999999999999999999998777542 2234444445555
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.51 E-value=0.00012 Score=58.18 Aligned_cols=43 Identities=37% Similarity=0.365 Sum_probs=28.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|++++..|..+..++.|+.|++++|++.+..|.
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 4566677777777666666666666677777766666555443
No 80
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.51 E-value=8.5e-05 Score=61.25 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|++++|.+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 345555555555555 2455555555555555555555554443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.49 E-value=7.5e-05 Score=60.80 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCccEEeCCCCcCceeCCcchh-cCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~-~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|||++|.|++.+|..+. .++.|+.|++++|.+++.
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 4555666666666665555554 455555555555555544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.48 E-value=0.00019 Score=54.44 Aligned_cols=41 Identities=37% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|+|+ .+|..+..++.|+.|++++|++++..|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence 45666666666665 566666666666666666666665443
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.47 E-value=0.00012 Score=55.96 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCcc
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLC 63 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lc 63 (149)
+++|+.|||++|.+++ +|..+..++.|+.|++++|++++ +|... .+..+....+.+|+..|
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence 3567788888888874 55567788888888888888874 56532 22344444556665554
No 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.47 E-value=0.00018 Score=55.02 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+.|++|+|++|.+++..|..+..++.|++|++++|+++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC
Confidence 34555555555555555555555555555555555554
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.46 E-value=0.00012 Score=60.80 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++.|+.|||++|.+++.+|..++.++.|+.|++++|.+++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 3678888888888888888888888888888888888877
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.44 E-value=0.00018 Score=56.14 Aligned_cols=42 Identities=38% Similarity=0.301 Sum_probs=26.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|+|++|+|++-.|..+..++.|+.|+|++|++++..|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 456666666666665555566666666667776666665443
No 87
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.43 E-value=0.0005 Score=52.53 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=25.7
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+|+.|+|++|.+++..|..+..++.|+.|++++|.+++..|
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 45666666666666656666666666666666666665444
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.43 E-value=0.0003 Score=52.46 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=16.3
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+|+.|+|++|.+++..|..+..+++|++|++++|++.+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 34444444444444333444444444444444444433
No 89
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.43 E-value=0.00026 Score=53.06 Aligned_cols=42 Identities=36% Similarity=0.396 Sum_probs=20.0
Q ss_pred CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|. +....|..+..++.|++|++++|++++..|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH
Confidence 345555555554 333334444555555555555555544433
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.43 E-value=9.6e-05 Score=51.77 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCccEEeCCCCcCceeCCcchhcCC-CCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVT-ALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~-~L~~l~ls~N~l~G~ 41 (149)
.+|+.|+|++|+++ .+|. +..+. .|+.|++++|++++.
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~ 57 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL 57 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc
Confidence 45667777777776 4554 33333 777777777777653
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.43 E-value=0.00016 Score=56.61 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=30.0
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|.+++.+|..+..++.|+.|++++|++++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 567777788887777777777777778888887777766
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.42 E-value=0.00011 Score=59.89 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=18.5
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRI 42 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~i 42 (149)
.|++|||++|++++..|..+..++.|++|++++|++++..
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 3444444444444444444444444444444444444433
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.41 E-value=0.00025 Score=58.86 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=27.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+.|+.|+|++|.+++..|..++.++.|+.|++++|.+++..|.
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 4566666666666666666666666666666666666665553
No 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.39 E-value=0.00027 Score=56.55 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
+.|+.|+|++|++++..|..+..+++|++|++++|++++.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 4556666666666655555566666666666666666543
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.37 E-value=0.00022 Score=55.64 Aligned_cols=44 Identities=30% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence 35677788888887766666677777777777777777765554
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.36 E-value=0.00016 Score=55.95 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++..|..+..++.|++|++++|++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 345555555555555545555555555555555555553
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.32 E-value=0.00019 Score=52.47 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=17.0
Q ss_pred CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccC-CcCC
Q 041880 2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSY-NRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~-N~l~ 39 (149)
++|+.||+++|. +++-.|..+..++.|++|++++ |+++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 344455555554 3322222444444455555544 4444
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.31 E-value=0.0004 Score=55.67 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+.|+.|+|++|.+++..|..+.+++.|++|++++|++++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 455666666666666556666666666666666666554
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.30 E-value=0.00045 Score=51.47 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence 4566777777776654444556666666666666666655443
No 100
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.30 E-value=0.00031 Score=56.01 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|||++|.+++..|..+..++.|+.|++++|++++..|.
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 5677888888888887788888888888888888888776664
No 101
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.29 E-value=0.0003 Score=57.99 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=23.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|++|||++|++++..|..+..++.|++|++++|++.+..|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh
Confidence 445555555555555555555555555555555555555544
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.27 E-value=7.6e-05 Score=57.13 Aligned_cols=42 Identities=36% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|.+++..|..+..++.|+.|++++|++++..|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 75 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh
Confidence 467888888888887767778888888888888888876554
No 103
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.26 E-value=0.00042 Score=51.65 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|++++..|..+..+++|++|++++|++++..|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 445556666665555444455555666666666665555443
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.25 E-value=0.00046 Score=51.61 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=25.3
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++. |. +..++.|+.|++++|++++
T Consensus 63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC
T ss_pred CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC
Confidence 5667777777777653 33 6777777777777777766
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.25 E-value=0.00023 Score=59.80 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=21.0
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|.|++..| +..++.|+.|+|++|++++
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 455555555555555444 5555566666666665554
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.24 E-value=0.00034 Score=58.46 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=6.2
Q ss_pred CCCCEEEccCCcCCC
Q 041880 26 TALASLNLSYNRLRG 40 (149)
Q Consensus 26 ~~L~~l~ls~N~l~G 40 (149)
++|+.|++++|++++
T Consensus 140 ~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 140 ALLEYINADNNQLTM 154 (571)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred ccccEEeCCCCccCc
Confidence 334444444444443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.24 E-value=0.00025 Score=53.75 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|+|++|.+++. ..+..++.|+.|++++|++++..|
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 4555666666665542 345555556666666555555433
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00044 Score=51.67 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|||++|++++ +| .+..++.|+.|++++|++++.
T Consensus 128 ~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 128 KNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred ccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 455566666666654 23 455566666666666666554
No 109
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.23 E-value=0.0006 Score=53.30 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+.|+.|+|++|.+++..|..+..++.|++|++++|.+.+..|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 455555666555555444455555555555555555555444
No 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.18 E-value=0.00035 Score=56.93 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=52.4
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 64 (149)
+++|+.|||++|++++..|..+..+++|+.|++++|++++..|... .+..+....+.+|+..|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 4689999999999999999999999999999999999999877542 344555566777766554
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.13 E-value=0.00069 Score=56.59 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=20.1
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+|++|||++|.+++..|..++.+++|++|++++|++++..|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 44455555555544333445555555555555555554444
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.11 E-value=0.0002 Score=60.36 Aligned_cols=40 Identities=35% Similarity=0.464 Sum_probs=20.1
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
+|+.|+|++|+|+ .||..+..+++|+.|++++|.++|.+|
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3444555555554 445555555555555555555554444
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.04 E-value=0.00079 Score=50.97 Aligned_cols=37 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++ + ..+..++.|+.|++++|++++
T Consensus 112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence 445555555555554 2 345555555555555555554
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.04 E-value=0.00015 Score=51.65 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+.|+.|+|++|.+++ +| .+..++.|+.|++++|+++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 345555555555554 45 5555555555555555554
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.02 E-value=0.00072 Score=56.74 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=29.7
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
|++|+.|+|++|.|++. ..+..++.|+.|+|++|++++..|
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 35677777777777653 467777888888888888877665
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.00 E-value=0.00093 Score=55.77 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=21.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|.|++ ||. .+++|+.|++++|++++ +|.
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 345556666666554 554 34556666666666555 444
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.98 E-value=0.00099 Score=53.72 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=32.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|++++|++++ +| +++.++.|++|++++|++++ +|.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC
Confidence 467888888888886 88 58888888888888888886 554
No 118
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.94 E-value=0.0011 Score=48.33 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCcc-EEeCCCCcCceeCCcchhcCCCCCEEEccCCc-CCCC
Q 041880 1 MTALE-SLDLSFNRLHGRIPEQLLGVTALASLNLSYNR-LRGR 41 (149)
Q Consensus 1 l~~L~-~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~-l~G~ 41 (149)
+++|+ .|+|++|.++ .||......+.|+.|++++|. +++.
T Consensus 154 l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC
Confidence 35677 8999999888 788766666888889999884 7743
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.90 E-value=0.0014 Score=52.97 Aligned_cols=39 Identities=31% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|||++|+|++ +| ++.++.|+.|++++|+++|..+
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 567778888888876 66 6777788888888888877543
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.89 E-value=0.00012 Score=52.21 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=43.9
Q ss_pred CCccEEeCCCCcCceeCCc------chhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880 2 TALESLDLSFNRLHGRIPE------QLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~------~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 59 (149)
..++.++++.|.|+|.+|. .+..++.|++|++++|++++ +|.-..+..+....+.+|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRN 80 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEE
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCC
Confidence 4678899999999999998 89999999999999999998 773222233444444444
No 121
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.88 E-value=0.00093 Score=50.94 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|.+++ +|. +..++.|+.|++++|++++
T Consensus 151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence 345555555555553 222 4555555555555555544
No 122
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.83 E-value=0.00085 Score=50.94 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=35.2
Q ss_pred CCCccEEeCCCCcCceeCCcchhcCC--CCCEEEccCCcCCCCCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLLGVT--ALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~~l~--~L~~l~ls~N~l~G~iP~ 44 (149)
+++|+.|||++|+|++. ..+..+. .|++|+|++|.+.+.+|.
T Consensus 195 l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 195 APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 47899999999999975 3455555 899999999999998884
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.82 E-value=0.0012 Score=53.02 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=18.4
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++..| +..++.|+.|++++|.+++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 445555555555555443 3444444444444444444
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.79 E-value=0.00095 Score=51.69 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=37.1
Q ss_pred CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPRG 45 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~~ 45 (149)
++++.|+|++|+|+ .||. .+..++.|++|+|++|++.+.||..
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 46899999999998 5665 6899999999999999998888864
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.78 E-value=0.0014 Score=52.56 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=26.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
++|+.|+|++|.+++..| +..+++|+.|++++|++++..|
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 456666777776665433 6677777777777777777655
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.73 E-value=0.0018 Score=49.25 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|.+++ +|. +..++.|+.|++++|++++
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc
Confidence 445555555555554 232 4555555555555555544
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.71 E-value=0.0031 Score=50.88 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=21.6
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP 43 (149)
.|+.|++++|++++. .++.++.|+.|++++|++++ +|
T Consensus 192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 445555555555542 25566666677777777766 55
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.55 E-value=0.00084 Score=52.44 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=25.9
Q ss_pred CCccEEeCCCCcCcee----CCcchhc--CCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLG--VTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~--l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|.+++. +|..+.. ++.|+.|++++|.+++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 5667777777777665 5555533 6777777777777766
No 129
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.43 E-value=0.0033 Score=42.32 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=31.7
Q ss_pred EEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCC--cccCCCccccccccCccC
Q 041880 6 SLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGN--QFNTFDNDSYIGNIHLCG 64 (149)
Q Consensus 6 ~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~~lcg 64 (149)
.+|.++++|+ .+||..+. ++|+.|+|++|+|+. ||... .+..+....+.+|+..|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCeecc
Confidence 5677777775 45665432 357777777777764 44321 122334445666766663
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.42 E-value=0.0037 Score=52.63 Aligned_cols=37 Identities=38% Similarity=0.487 Sum_probs=18.8
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
+|+.|+|++|+|+ .||. .+++|+.|++++|+++ .||.
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 3444455555444 3443 3445556666666655 4554
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.38 E-value=0.0012 Score=51.57 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=17.7
Q ss_pred CccEEeCCCCcCc----eeCCcchhcCCCCCEEEccCCcCCC
Q 041880 3 ALESLDLSFNRLH----GRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 3 ~L~~LdLs~N~L~----G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+|+.|+|++|.++ +.+|..+..++.|+.|++++|.+++
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 4444444444443 3444444444444444444444443
No 132
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.20 E-value=0.0056 Score=46.74 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=19.8
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|++|++++|++++ +|. +..++.|++|++++|.+..
T Consensus 66 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~ 102 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD 102 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC
Confidence 445556666655553 333 5555555555555555544
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.19 E-value=0.0016 Score=49.51 Aligned_cols=33 Identities=36% Similarity=0.312 Sum_probs=12.3
Q ss_pred ccEEeCCCCcCceeCCcchhcCCCCCEEEccCC
Q 041880 4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYN 36 (149)
Q Consensus 4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N 36 (149)
|++|+|++|.+++.+|..++.+++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 333333333333333333333333333333333
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.08 E-value=0.0064 Score=46.13 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=19.0
Q ss_pred CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccCCc
Q 041880 2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSYNR 37 (149)
Q Consensus 2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~N~ 37 (149)
++|+.|+|++|. +++..|..+..++.|+.|++++|.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 345555555555 444455555555555555555553
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.02 E-value=0.0018 Score=50.22 Aligned_cols=36 Identities=39% Similarity=0.408 Sum_probs=14.5
Q ss_pred ccEEeCCCCcCceeCCcchhcC-----CCCCEEEccCCcCC
Q 041880 4 LESLDLSFNRLHGRIPEQLLGV-----TALASLNLSYNRLR 39 (149)
Q Consensus 4 L~~LdLs~N~L~G~iP~~l~~l-----~~L~~l~ls~N~l~ 39 (149)
|+.|||++|.+++..+..+..+ +.|++|++++|+++
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 4444444444443333333332 34444444444443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.90 E-value=0.0026 Score=50.39 Aligned_cols=39 Identities=26% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCccEEeCCCCcCceeCCcchhc-----CCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLG-----VTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~-----l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|.+++..+..+.. .+.|+.|++++|++++
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 67888888888887765555553 6688888888888875
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.54 E-value=0.0037 Score=48.44 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCccEEeCCCCcCceeCCcchhcC-----CCCCEEEccCCcCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGV-----TALASLNLSYNRLRGRI 42 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l-----~~L~~l~ls~N~l~G~i 42 (149)
++|+.|||++|.+++..+..+... +.|+.|++++|++++..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 567777777777776666544443 67777777777775544
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.49 E-value=0.015 Score=44.78 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=22.1
Q ss_pred CccEEeCCCCcCceeCCcc-hhcCCCCCEEEccCCcCCC
Q 041880 3 ALESLDLSFNRLHGRIPEQ-LLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~-l~~l~~L~~l~ls~N~l~G 40 (149)
+|+.|++++|+..+.||.. +..+++|+.||+++|+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 3455566554444456543 4566666777777776653
No 139
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.84 E-value=0.052 Score=36.29 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=30.8
Q ss_pred CccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCC
Q 041880 3 ALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~ 39 (149)
+|+.|||++|+|+. ||. .+..++.|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence 68999999999984 554 5678999999999999764
No 140
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.74 E-value=0.0088 Score=47.06 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCccEEeCCCCcCceeCCcchh---cCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSFNRLHGRIPEQLL---GVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP~~l~---~l~~L~~l~ls~N~l~G 40 (149)
+++|+.|+|++|.+....+..+. .++.|+.|+|+.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 36788888888888765554444 46778888888888766
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.70 E-value=0.012 Score=48.12 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=25.6
Q ss_pred CCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|++++ .+|..+..+++|+.|++++|.+++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 456777777777765 445555666777777777776654
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.52 E-value=0.014 Score=46.03 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
++|+.|+|++|.++.. +|..+..+++|+.|++++|.++
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 3556666666666543 5555555666666666666554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.32 E-value=0.022 Score=44.78 Aligned_cols=38 Identities=32% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCccEEeCCCCcCce----eCCcchhcCCCCCEEEccCCcCC
Q 041880 2 TALESLDLSFNRLHG----RIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G----~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+.|+.|||++|.|+. .++..+...++|++|||++|+++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 346666666666643 23444455666666666666654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.17 E-value=0.021 Score=44.86 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|++|||++|.|+.. ++..+...++|+.|+|++|+++.
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 5799999999999753 45667778899999999999865
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.76 E-value=0.019 Score=46.78 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCccEEeCCCCcCcee-CCcchhcCCCCCEEEccCCcCCCC
Q 041880 2 TALESLDLSFNRLHGR-IPEQLLGVTALASLNLSYNRLRGR 41 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~-iP~~l~~l~~L~~l~ls~N~l~G~ 41 (149)
++|+.|||++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 5677777777777654 444455677777777777776654
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.35 E-value=0.051 Score=38.22 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|||++|.+... +...+...++|++|+|++|++..
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 5789999999998542 44456667889999999998865
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.34 E-value=0.038 Score=38.91 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCccEEeCCCC-cCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFN-RLHGR----IPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N-~L~G~----iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+.|+.|+|++| .+... +...+...++|++|+|++|++..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 57899999999 88643 44556677899999999999864
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.18 E-value=0.04 Score=44.84 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCccEEeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G 40 (149)
++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 567778888888766555444 567788888888887744
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.70 E-value=0.066 Score=42.02 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCccEEeCCC--CcCcee--C---Ccch--hcCCCCCEEEccCCcCCC
Q 041880 1 MTALESLDLSF--NRLHGR--I---PEQL--LGVTALASLNLSYNRLRG 40 (149)
Q Consensus 1 l~~L~~LdLs~--N~L~G~--i---P~~l--~~l~~L~~l~ls~N~l~G 40 (149)
+++|+.|+|+. |+..|. + -..+ ..++.|+.|++.+|.+..
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 46788888753 232222 1 1111 246788888888887764
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=87.81 E-value=0.53 Score=38.11 Aligned_cols=36 Identities=31% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCccEEeCCCCcCceeCCcchh----cCCCCCEEEccCCc
Q 041880 2 TALESLDLSFNRLHGRIPEQLL----GVTALASLNLSYNR 37 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~----~l~~L~~l~ls~N~ 37 (149)
++|++|+|++|.+++..+..+. .+++|+.|++++|.
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 4556666666665554433333 33456666665554
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=86.05 E-value=0.76 Score=34.70 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880 2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR 44 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~ 44 (149)
++|+.|+|++|+++ .||. .+..+++|+.+++++| + -.|+.
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i-~~I~~ 266 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-L-KTIGQ 266 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-C-CEECT
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-c-ceehH
Confidence 57999999999998 5665 5888999999999987 3 33554
No 152
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.94 E-value=0.54 Score=33.83 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=18.4
Q ss_pred CccEEeCCCC-cCcee----CCcchhcCCCCCEEEccCCcCC
Q 041880 3 ALESLDLSFN-RLHGR----IPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 3 ~L~~LdLs~N-~L~G~----iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
.|+.|+|++| ++... |-..|..-+.|+.|+|++|++.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 4566666654 44211 2223344455666666666553
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=80.76 E-value=1 Score=31.75 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=27.6
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCc
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNR 37 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~ 37 (149)
.|+.|||+++.++..=-..+..++.|+.|+|++..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 47899999998865433557789999999999864
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=74.72 E-value=2.9 Score=31.42 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCCccEEeCCCCcCceeCC-cchhcCCCCCEEEccCCcCC
Q 041880 1 MTALESLDLSFNRLHGRIP-EQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 1 l~~L~~LdLs~N~L~G~iP-~~l~~l~~L~~l~ls~N~l~ 39 (149)
+++|+.|+|++ +++ .|+ ..+..+++|+.+++++|.+.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc
Confidence 36788899988 777 455 45888999999999998875
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=69.83 E-value=2.4 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880 2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRG 40 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G 40 (149)
+.|+.|+|++|++... |-..|..-++|+.|+|++|++..
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4689999999999632 23345566889999999999864
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=59.47 E-value=2.2 Score=30.02 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=22.8
Q ss_pred CCCccEEeCCCCc-CceeCCcchhcC----CCCCEEEccCC
Q 041880 1 MTALESLDLSFNR-LHGRIPEQLLGV----TALASLNLSYN 36 (149)
Q Consensus 1 l~~L~~LdLs~N~-L~G~iP~~l~~l----~~L~~l~ls~N 36 (149)
+++|+.|+|+++. ++..-=..++.+ ++|++|++++.
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 4678888888874 554322344443 36888888775
No 157
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=57.14 E-value=2.4 Score=22.19 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.2
Q ss_pred eehhhHHHHH
Q 041880 104 GYASGVVIGL 113 (149)
Q Consensus 104 ~~~~~~~~~~ 113 (149)
+++++.++++
T Consensus 15 GiVvG~v~gv 24 (38)
T 2k1k_A 15 AVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4444444433
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=53.77 E-value=12 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCccEEeCCCCcCceeCCcchhcCCCCCEEEc
Q 041880 2 TALESLDLSFNRLHGRIPEQLLGVTALASLNL 33 (149)
Q Consensus 2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~l 33 (149)
++|+.++|++|+++ .||......+.|+.+++
T Consensus 180 ~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 180 YNLKKADLSKTKIT-KLPASTFVYAGIEEVLL 210 (401)
T ss_dssp TTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred ccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence 45677777776665 34433222334444443
No 159
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.58 E-value=26 Score=19.63 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=4.1
Q ss_pred HHHHHhhhh
Q 041880 128 LVKMVERDQ 136 (149)
Q Consensus 128 ~~~~~~~~~ 136 (149)
..-.|+|.+
T Consensus 35 K~GFFkR~~ 43 (54)
T 2knc_A 35 KVGFFKRNR 43 (54)
T ss_dssp HHHHTTTTC
T ss_pred HcCcccCCC
Confidence 334455554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=28.61 E-value=61 Score=24.33 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.3
Q ss_pred hcCCCCCEEEccCC
Q 041880 23 LGVTALASLNLSYN 36 (149)
Q Consensus 23 ~~l~~L~~l~ls~N 36 (149)
..+++|+.+++.++
T Consensus 283 ~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 283 SGCSNLTKVVMDNS 296 (379)
T ss_dssp TTCTTCCEEEECCT
T ss_pred cccccccccccccc
Confidence 34444444444433
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=27.54 E-value=71 Score=24.74 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=23.5
Q ss_pred CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880 3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39 (149)
Q Consensus 3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~ 39 (149)
+|+.++|.+ ++.---+..+..+.+|+.+++++|++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce
Confidence 355566654 444222345778899999999988664
No 162
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.81 E-value=44 Score=18.71 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 041880 129 VKMVERD 135 (149)
Q Consensus 129 ~~~~~~~ 135 (149)
.-.|+|.
T Consensus 33 ~GFFKR~ 39 (54)
T 2l8s_A 33 IGFFKRP 39 (54)
T ss_dssp HHHTTSC
T ss_pred cCcccCC
Confidence 3344444
Done!