Query 041882
Match_columns 491
No_of_seqs 630 out of 3126
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 11:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2E-62 4.3E-67 494.4 56.8 438 44-483 373-868 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.6E-62 1.2E-66 491.1 53.8 431 41-472 437-892 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.8E-61 6.1E-66 483.7 48.7 428 43-487 89-553 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 5.5E-59 1.2E-63 478.1 47.2 430 40-487 252-716 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-57 2.4E-62 468.5 45.4 439 40-487 151-650 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-54 4.9E-59 433.8 43.7 400 72-487 83-519 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-27 4.5E-32 249.9 53.9 423 47-484 437-859 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-27 4.7E-32 249.7 53.4 431 44-489 468-898 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 7.4E-22 1.6E-26 178.6 32.3 429 33-479 40-507 (966)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-21 2.8E-26 184.9 35.6 301 120-427 44-354 (389)
11 PRK11447 cellulose synthase su 99.9 9.2E-20 2E-24 192.9 52.4 426 47-487 118-696 (1157)
12 PRK15174 Vi polysaccharide exp 99.9 2.6E-20 5.7E-25 184.5 45.1 380 41-430 42-430 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 2.2E-21 4.9E-26 175.5 33.9 381 46-441 121-505 (966)
14 PRK11447 cellulose synthase su 99.9 4.6E-20 1E-24 195.1 49.2 428 49-489 277-738 (1157)
15 PRK11788 tetratricopeptide rep 99.9 7.7E-21 1.7E-25 179.6 36.6 303 152-461 41-353 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-19 8.3E-24 176.8 49.3 400 48-456 134-572 (615)
17 PRK15174 Vi polysaccharide exp 99.9 3.2E-19 6.8E-24 176.8 46.1 360 51-420 15-381 (656)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.8E-23 173.1 49.0 400 78-487 129-567 (615)
19 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.7E-22 168.1 47.8 407 42-462 16-461 (765)
20 PRK10049 pgaA outer membrane p 99.9 2E-17 4.3E-22 167.6 46.8 415 61-489 2-454 (765)
21 PRK14574 hmsH outer membrane p 99.9 4.1E-16 8.9E-21 155.2 48.7 430 48-487 41-509 (822)
22 PRK09782 bacteriophage N4 rece 99.8 4.1E-16 8.9E-21 158.4 48.4 184 297-488 520-703 (987)
23 PRK09782 bacteriophage N4 rece 99.8 3.4E-16 7.3E-21 159.0 47.8 414 54-488 57-669 (987)
24 KOG4422 Uncharacterized conser 99.8 6.6E-15 1.4E-19 128.4 40.7 404 48-457 122-592 (625)
25 PRK14574 hmsH outer membrane p 99.8 1.9E-14 4E-19 143.5 46.1 405 46-461 73-517 (822)
26 KOG2002 TPR-containing nuclear 99.8 1.8E-15 3.9E-20 144.7 35.9 425 45-476 274-764 (1018)
27 KOG2002 TPR-containing nuclear 99.8 6.6E-15 1.4E-19 140.9 36.1 430 52-487 247-741 (1018)
28 KOG4422 Uncharacterized conser 99.8 2.4E-14 5.2E-19 125.0 35.5 344 73-422 204-592 (625)
29 KOG2003 TPR repeat-containing 99.8 5.1E-15 1.1E-19 130.1 29.8 416 54-479 214-711 (840)
30 KOG2076 RNA polymerase III tra 99.7 1.5E-12 3.2E-17 124.2 43.3 367 47-418 145-553 (895)
31 KOG1155 Anaphase-promoting com 99.7 1.8E-12 3.8E-17 114.7 38.5 362 108-487 161-532 (559)
32 KOG2076 RNA polymerase III tra 99.7 6.1E-13 1.3E-17 126.8 38.2 366 85-455 148-555 (895)
33 KOG0495 HAT repeat protein [RN 99.7 2.3E-11 5E-16 112.2 44.4 433 46-489 411-878 (913)
34 PRK10747 putative protoheme IX 99.7 4.1E-13 9E-18 125.8 34.0 283 124-419 97-389 (398)
35 PF13429 TPR_15: Tetratricopep 99.7 6.6E-16 1.4E-20 138.3 13.9 260 81-347 13-274 (280)
36 PRK10747 putative protoheme IX 99.7 1E-12 2.3E-17 123.1 35.6 285 88-385 96-390 (398)
37 TIGR00540 hemY_coli hemY prote 99.7 7E-13 1.5E-17 125.0 34.4 291 122-419 95-398 (409)
38 TIGR00540 hemY_coli hemY prote 99.7 1.2E-12 2.7E-17 123.3 34.9 290 158-453 96-397 (409)
39 COG2956 Predicted N-acetylgluc 99.7 1.1E-12 2.3E-17 110.8 29.1 291 52-349 46-346 (389)
40 PF13429 TPR_15: Tetratricopep 99.7 8.4E-16 1.8E-20 137.6 11.4 263 45-314 12-276 (280)
41 KOG2003 TPR repeat-containing 99.7 1.2E-12 2.5E-17 115.4 30.3 382 50-440 246-708 (840)
42 KOG1915 Cell cycle control pro 99.6 1.1E-10 2.4E-15 103.8 41.5 377 45-434 77-548 (677)
43 COG2956 Predicted N-acetylgluc 99.6 3.8E-12 8.3E-17 107.5 30.4 287 124-420 48-347 (389)
44 KOG0495 HAT repeat protein [RN 99.6 4.7E-10 1E-14 103.7 44.5 425 45-486 380-812 (913)
45 COG3071 HemY Uncharacterized e 99.6 4.7E-11 1E-15 104.1 33.7 292 123-424 96-394 (400)
46 COG3071 HemY Uncharacterized e 99.6 4.5E-11 9.7E-16 104.3 33.4 281 160-450 98-385 (400)
47 KOG1155 Anaphase-promoting com 99.6 2.3E-10 4.9E-15 101.6 37.9 329 73-419 161-494 (559)
48 KOG1126 DNA-binding cell divis 99.6 1.3E-12 2.8E-17 120.8 24.6 200 215-419 420-619 (638)
49 KOG1126 DNA-binding cell divis 99.6 1.6E-12 3.5E-17 120.2 25.2 282 91-386 334-621 (638)
50 KOG0547 Translocase of outer m 99.6 2.7E-10 5.7E-15 101.8 35.7 80 50-132 124-204 (606)
51 KOG4318 Bicoid mRNA stability 99.5 1.1E-11 2.4E-16 117.9 25.4 349 62-440 11-393 (1088)
52 KOG1915 Cell cycle control pro 99.5 3.5E-09 7.7E-14 94.4 39.1 396 73-483 70-492 (677)
53 KOG0547 Translocase of outer m 99.5 6.5E-10 1.4E-14 99.4 32.6 84 80-166 119-203 (606)
54 KOG3785 Uncharacterized conser 99.4 5.5E-09 1.2E-13 89.9 34.2 411 45-476 26-475 (557)
55 PRK12370 invasion protein regu 99.4 1.4E-10 3E-15 113.7 28.5 267 73-350 253-535 (553)
56 KOG1173 Anaphase-promoting com 99.4 2.8E-09 6.1E-14 97.2 34.0 286 143-436 241-532 (611)
57 PRK12370 invasion protein regu 99.4 4.1E-10 8.8E-15 110.5 30.6 269 108-386 253-536 (553)
58 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.6E-15 99.1 26.4 197 113-313 33-230 (234)
59 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.4E-15 98.8 26.7 199 217-419 32-231 (234)
60 KOG2047 mRNA splicing factor [ 99.4 1.5E-07 3.2E-12 87.5 43.3 260 217-481 388-677 (835)
61 KOG1129 TPR repeat-containing 99.4 4.7E-11 1E-15 101.1 19.1 230 185-420 227-458 (478)
62 PF12569 NARP1: NMDA receptor- 99.4 5.1E-09 1.1E-13 99.3 34.1 289 51-348 14-332 (517)
63 PF12569 NARP1: NMDA receptor- 99.4 3.1E-09 6.7E-14 100.8 32.3 128 289-418 197-332 (517)
64 KOG1156 N-terminal acetyltrans 99.4 5E-08 1.1E-12 90.7 38.8 416 51-480 51-500 (700)
65 KOG1173 Anaphase-promoting com 99.4 1.4E-08 3.1E-13 92.8 33.6 431 40-485 15-512 (611)
66 KOG4318 Bicoid mRNA stability 99.4 2.6E-10 5.7E-15 108.9 23.1 274 98-406 12-286 (1088)
67 KOG1129 TPR repeat-containing 99.4 7.9E-10 1.7E-14 93.9 23.3 230 150-385 227-458 (478)
68 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.3E-16 78.0 6.6 50 389-438 1-50 (50)
69 KOG1840 Kinesin light chain [C 99.3 4.6E-09 9.9E-14 98.5 26.7 238 181-418 199-477 (508)
70 KOG4162 Predicted calmodulin-b 99.3 3.5E-07 7.5E-12 87.0 38.6 371 106-483 318-775 (799)
71 KOG2376 Signal recognition par 99.3 2.2E-07 4.9E-12 85.6 36.2 382 47-441 18-507 (652)
72 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 77.0 6.6 49 214-262 1-49 (50)
73 KOG3785 Uncharacterized conser 99.3 1.3E-07 2.8E-12 81.6 31.0 361 50-431 66-499 (557)
74 KOG1840 Kinesin light chain [C 99.2 9.6E-09 2.1E-13 96.3 25.1 238 111-348 199-477 (508)
75 PRK11189 lipoprotein NlpI; Pro 99.2 3.6E-08 7.7E-13 88.6 27.8 229 51-289 36-273 (296)
76 KOG2047 mRNA splicing factor [ 99.2 2.4E-06 5.1E-11 79.8 39.0 383 44-438 105-559 (835)
77 COG3063 PilF Tfp pilus assembl 99.2 3.8E-08 8.3E-13 79.9 24.4 193 82-278 41-234 (250)
78 KOG1174 Anaphase-promoting com 99.2 9.3E-07 2E-11 78.1 33.7 267 144-420 230-500 (564)
79 KOG4340 Uncharacterized conser 99.2 1.7E-07 3.6E-12 79.0 27.8 415 43-484 12-436 (459)
80 KOG1174 Anaphase-promoting com 99.2 3E-07 6.5E-12 81.1 29.9 305 74-386 192-501 (564)
81 KOG4162 Predicted calmodulin-b 99.2 1.7E-06 3.6E-11 82.5 36.9 396 55-455 298-783 (799)
82 KOG0548 Molecular co-chaperone 99.2 5.8E-07 1.3E-11 82.1 32.5 376 49-434 10-467 (539)
83 PRK11189 lipoprotein NlpI; Pro 99.1 1.8E-07 3.9E-12 84.1 28.7 218 125-351 40-266 (296)
84 cd05804 StaR_like StaR_like; a 99.1 1E-06 2.2E-11 82.3 34.7 197 78-279 8-214 (355)
85 KOG1156 N-terminal acetyltrans 99.1 3.6E-06 7.7E-11 78.8 36.6 401 39-451 73-507 (700)
86 KOG2376 Signal recognition par 99.1 5.9E-06 1.3E-10 76.5 37.5 379 83-476 19-506 (652)
87 COG3063 PilF Tfp pilus assembl 99.1 1.9E-07 4.1E-12 76.0 24.6 195 186-384 40-235 (250)
88 cd05804 StaR_like StaR_like; a 99.1 1E-06 2.2E-11 82.4 33.4 306 111-420 6-336 (355)
89 KOG1127 TPR repeat-containing 99.1 2.7E-07 5.9E-12 89.9 27.8 426 55-490 472-995 (1238)
90 KOG4340 Uncharacterized conser 99.1 2.4E-06 5.3E-11 72.2 29.5 151 51-213 54-210 (459)
91 PRK04841 transcriptional regul 99.0 3.8E-06 8.3E-11 88.8 37.1 337 85-421 383-761 (903)
92 KOG1914 mRNA cleavage and poly 99.0 1.8E-05 3.9E-10 72.7 36.3 408 40-453 19-499 (656)
93 KOG0985 Vesicle coat protein c 99.0 1.4E-05 3E-10 78.6 35.5 394 46-490 843-1307(1666)
94 KOG0624 dsRNA-activated protei 99.0 8.9E-06 1.9E-10 70.3 30.5 301 75-386 37-371 (504)
95 PF04733 Coatomer_E: Coatomer 99.0 7.5E-08 1.6E-12 85.3 18.4 250 49-314 9-264 (290)
96 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 2.9E-12 83.6 18.3 149 225-384 111-264 (290)
97 KOG3617 WD40 and TPR repeat-co 98.9 1.6E-05 3.5E-10 76.5 31.9 378 52-482 739-1165(1416)
98 PRK04841 transcriptional regul 98.9 2.1E-05 4.5E-10 83.3 37.2 332 156-487 384-756 (903)
99 KOG1070 rRNA processing protei 98.9 1.7E-06 3.8E-11 87.4 26.4 232 213-451 1455-1695(1710)
100 KOG1125 TPR repeat-containing 98.9 4.7E-07 1E-11 83.4 20.6 216 51-276 295-523 (579)
101 KOG0548 Molecular co-chaperone 98.9 2.6E-05 5.6E-10 71.7 30.3 378 83-472 9-470 (539)
102 PLN02789 farnesyltranstransfer 98.8 7.1E-06 1.5E-10 73.8 26.7 133 90-226 51-186 (320)
103 KOG1125 TPR repeat-containing 98.8 1.3E-06 2.9E-11 80.5 21.9 220 122-347 296-524 (579)
104 PLN02789 farnesyltranstransfer 98.8 8.3E-06 1.8E-10 73.3 26.8 207 121-333 47-267 (320)
105 KOG0985 Vesicle coat protein c 98.8 0.0001 2.2E-09 72.8 35.2 315 47-418 990-1306(1666)
106 KOG0624 dsRNA-activated protei 98.8 6.6E-05 1.4E-09 65.1 34.2 297 47-351 44-371 (504)
107 KOG1070 rRNA processing protei 98.8 8.4E-06 1.8E-10 82.7 26.1 201 147-353 1459-1666(1710)
108 KOG1128 Uncharacterized conser 98.7 7.4E-06 1.6E-10 77.8 23.5 230 185-435 402-632 (777)
109 KOG3617 WD40 and TPR repeat-co 98.7 1.4E-05 3E-10 76.9 25.2 284 108-451 723-1017(1416)
110 PRK14720 transcript cleavage f 98.7 2.2E-05 4.7E-10 78.9 27.1 278 145-478 30-311 (906)
111 KOG3616 Selective LIM binding 98.7 3.6E-05 7.9E-10 73.3 26.0 138 258-417 739-876 (1636)
112 KOG1128 Uncharacterized conser 98.7 2E-05 4.3E-10 75.0 23.9 215 150-385 402-616 (777)
113 COG5010 TadD Flp pilus assembl 98.6 1.9E-05 4.1E-10 66.0 20.3 165 74-243 65-229 (257)
114 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.2E-10 70.6 20.2 183 77-280 34-232 (235)
115 PRK10370 formate-dependent nit 98.6 1.8E-05 3.8E-10 66.3 20.6 147 259-420 24-173 (198)
116 KOG3616 Selective LIM binding 98.6 0.00014 2.9E-09 69.6 28.0 190 155-378 741-930 (1636)
117 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.5E-10 70.2 20.2 186 214-420 31-232 (235)
118 PF12854 PPR_1: PPR repeat 98.6 7.3E-08 1.6E-12 54.2 4.0 32 176-207 2-33 (34)
119 PRK14720 transcript cleavage f 98.6 6.5E-05 1.4E-09 75.6 27.0 170 74-280 29-198 (906)
120 KOG1127 TPR repeat-containing 98.6 0.00012 2.7E-09 72.2 27.8 421 51-481 502-1026(1238)
121 PF12854 PPR_1: PPR repeat 98.6 7.8E-08 1.7E-12 54.0 3.9 32 386-417 2-33 (34)
122 COG5010 TadD Flp pilus assembl 98.6 2.1E-05 4.4E-10 65.8 19.6 157 115-275 70-226 (257)
123 PRK15179 Vi polysaccharide bio 98.6 5.6E-05 1.2E-09 75.2 26.1 180 248-437 83-266 (694)
124 PRK10370 formate-dependent nit 98.6 2.6E-05 5.5E-10 65.3 20.4 119 229-350 52-173 (198)
125 PRK15359 type III secretion sy 98.5 1.2E-05 2.5E-10 63.6 16.6 109 306-420 13-121 (144)
126 KOG3081 Vesicle coat complex C 98.5 0.00018 3.8E-09 60.4 23.2 248 85-349 17-270 (299)
127 KOG3081 Vesicle coat complex C 98.5 0.00014 3E-09 61.0 22.5 249 154-419 16-270 (299)
128 PRK15179 Vi polysaccharide bio 98.5 0.00014 3.1E-09 72.4 25.9 183 212-404 82-268 (694)
129 KOG1914 mRNA cleavage and poly 98.5 0.0012 2.7E-08 61.1 35.5 410 73-489 17-499 (656)
130 PRK15359 type III secretion sy 98.5 2.7E-05 5.9E-10 61.5 16.7 88 295-384 33-120 (144)
131 KOG3060 Uncharacterized conser 98.4 0.00055 1.2E-08 57.1 22.7 188 54-245 25-220 (289)
132 TIGR02552 LcrH_SycD type III s 98.4 2.8E-05 6E-10 61.1 14.7 98 76-175 17-114 (135)
133 COG4783 Putative Zn-dependent 98.4 0.00032 7E-09 64.1 22.6 139 261-420 316-454 (484)
134 KOG3060 Uncharacterized conser 98.3 0.00086 1.9E-08 56.0 22.9 186 196-385 27-220 (289)
135 TIGR02552 LcrH_SycD type III s 98.3 5.7E-05 1.2E-09 59.3 14.9 95 323-419 19-113 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.8E-05 1.7E-09 68.6 15.7 123 290-418 173-295 (395)
137 COG4783 Putative Zn-dependent 98.2 0.0017 3.7E-08 59.6 23.2 143 221-385 311-454 (484)
138 KOG2053 Mitochondrial inherita 98.2 0.0093 2E-07 58.9 41.1 108 50-163 18-127 (932)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.9E-05 2.2E-09 67.9 15.3 124 114-243 172-295 (395)
140 KOG2053 Mitochondrial inherita 98.1 0.011 2.3E-07 58.5 42.4 412 51-483 53-528 (932)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.3E-09 56.3 15.4 126 289-417 15-144 (145)
142 TIGR00756 PPR pentatricopeptid 98.1 8.7E-06 1.9E-10 46.4 4.5 33 393-425 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00036 7.9E-09 55.4 15.1 21 119-139 56-76 (145)
144 PF13812 PPR_3: Pentatricopept 98.0 9.9E-06 2.1E-10 45.8 4.4 33 392-424 2-34 (34)
145 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.7E-10 45.8 4.5 33 218-250 2-34 (35)
146 PF10037 MRP-S27: Mitochondria 98.0 0.0002 4.2E-09 66.3 14.2 124 211-334 61-186 (429)
147 PF10037 MRP-S27: Mitochondria 98.0 0.00016 3.5E-09 66.9 13.6 118 145-262 65-184 (429)
148 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 45.2 4.3 31 218-248 3-33 (34)
149 PRK10866 outer membrane biogen 97.9 0.0056 1.2E-07 53.1 20.1 56 119-175 40-98 (243)
150 PF08579 RPM2: Mitochondrial r 97.8 0.00041 8.8E-09 50.1 10.1 77 362-438 31-116 (120)
151 KOG2280 Vacuolar assembly/sort 97.8 0.039 8.4E-07 53.7 25.9 343 69-451 425-795 (829)
152 PF08579 RPM2: Mitochondrial r 97.8 0.00039 8.4E-09 50.3 9.8 71 262-332 36-115 (120)
153 PF04840 Vps16_C: Vps16, C-ter 97.8 0.027 5.9E-07 50.8 28.6 140 287-453 178-317 (319)
154 cd00189 TPR Tetratricopeptide 97.8 0.00071 1.5E-08 48.8 11.6 94 324-419 3-96 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0017 3.7E-08 49.4 14.0 98 323-420 4-105 (119)
156 cd00189 TPR Tetratricopeptide 97.8 0.0006 1.3E-08 49.3 11.0 87 84-172 8-94 (100)
157 KOG2796 Uncharacterized conser 97.7 0.019 4.2E-07 48.5 20.0 131 114-245 180-315 (366)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.9E-08 50.0 13.0 19 153-171 46-64 (119)
159 PF01535 PPR: PPR repeat; Int 97.7 6.3E-05 1.4E-09 41.4 3.7 29 393-421 2-30 (31)
160 PLN03088 SGT1, suppressor of 97.7 0.00091 2E-08 61.8 13.4 89 85-175 11-99 (356)
161 PLN03088 SGT1, suppressor of 97.7 0.0014 3E-08 60.6 14.5 92 48-141 9-100 (356)
162 PRK10866 outer membrane biogen 97.7 0.017 3.8E-07 50.1 20.3 55 190-245 41-98 (243)
163 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 52.2 5.3 81 54-136 2-83 (84)
164 PF01535 PPR: PPR repeat; Int 97.7 7.2E-05 1.6E-09 41.1 3.6 28 218-245 2-29 (31)
165 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.4E-08 58.0 13.9 130 183-315 3-136 (280)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00014 2.9E-09 51.5 5.8 80 335-416 3-83 (84)
167 PRK15363 pathogenicity island 97.6 0.0013 2.9E-08 51.3 11.4 90 83-174 42-131 (157)
168 PF05843 Suf: Suppressor of fo 97.6 0.0015 3.4E-08 58.1 13.6 128 78-209 3-135 (280)
169 PRK15363 pathogenicity island 97.6 0.0022 4.8E-08 50.1 12.4 94 115-210 39-132 (157)
170 CHL00033 ycf3 photosystem I as 97.6 0.0018 3.8E-08 53.0 12.5 81 76-157 35-117 (168)
171 KOG0550 Molecular chaperone (D 97.6 0.033 7.2E-07 50.3 20.7 169 179-351 166-351 (486)
172 PRK02603 photosystem I assembl 97.6 0.0057 1.2E-07 50.2 15.3 82 149-231 38-121 (172)
173 PF14938 SNAP: Soluble NSF att 97.6 0.014 3E-07 52.3 18.9 131 294-441 102-249 (282)
174 PF06239 ECSIT: Evolutionarily 97.6 0.0021 4.6E-08 52.8 11.9 32 198-229 120-151 (228)
175 PRK10153 DNA-binding transcrip 97.5 0.014 3E-07 56.6 19.5 143 282-429 333-489 (517)
176 PRK02603 photosystem I assembl 97.5 0.0068 1.5E-07 49.7 15.2 61 114-174 38-100 (172)
177 KOG0553 TPR repeat-containing 97.5 0.0015 3.3E-08 56.1 11.2 84 298-384 93-177 (304)
178 PF04840 Vps16_C: Vps16, C-ter 97.5 0.066 1.4E-06 48.4 22.6 110 322-451 178-287 (319)
179 CHL00033 ycf3 photosystem I as 97.5 0.0051 1.1E-07 50.3 14.0 94 111-205 35-137 (168)
180 PF07079 DUF1347: Protein of u 97.5 0.08 1.7E-06 48.6 37.4 137 50-191 15-177 (549)
181 COG4235 Cytochrome c biogenesi 97.5 0.0089 1.9E-07 51.8 15.2 116 57-175 138-256 (287)
182 PF06239 ECSIT: Evolutionarily 97.4 0.0019 4.1E-08 53.0 10.3 87 180-266 46-153 (228)
183 PF14938 SNAP: Soluble NSF att 97.4 0.012 2.6E-07 52.7 16.7 25 79-103 38-62 (282)
184 COG4235 Cytochrome c biogenesi 97.4 0.012 2.5E-07 51.1 15.4 122 309-435 145-269 (287)
185 PF14559 TPR_19: Tetratricopep 97.4 0.00078 1.7E-08 45.3 6.9 52 88-140 3-54 (68)
186 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.4E-07 44.5 13.5 53 52-104 12-66 (120)
187 KOG0553 TPR repeat-containing 97.4 0.0028 6.1E-08 54.5 11.3 105 83-191 88-192 (304)
188 KOG2041 WD40 repeat protein [G 97.4 0.15 3.3E-06 49.4 29.2 139 51-206 673-821 (1189)
189 PF12688 TPR_5: Tetratrico pep 97.4 0.019 4.2E-07 43.2 14.3 92 327-418 7-102 (120)
190 PRK10153 DNA-binding transcrip 97.4 0.023 5E-07 55.1 18.4 138 107-247 333-484 (517)
191 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.3E-08 44.6 6.5 64 367-433 2-65 (68)
192 KOG1130 Predicted G-alpha GTPa 97.3 0.006 1.3E-07 54.8 12.5 132 253-384 197-343 (639)
193 PF13525 YfiO: Outer membrane 97.3 0.04 8.6E-07 46.5 17.3 49 362-410 147-197 (203)
194 COG4700 Uncharacterized protei 97.3 0.065 1.4E-06 42.9 17.6 132 283-418 86-220 (251)
195 KOG0550 Molecular chaperone (D 97.2 0.15 3.2E-06 46.3 21.6 271 85-386 58-351 (486)
196 COG4700 Uncharacterized protei 97.2 0.074 1.6E-06 42.6 17.7 102 109-210 87-189 (251)
197 PF13525 YfiO: Outer membrane 97.2 0.039 8.4E-07 46.6 16.4 57 83-139 12-70 (203)
198 COG3898 Uncharacterized membra 97.2 0.15 3.3E-06 45.9 29.2 296 114-424 85-396 (531)
199 KOG1130 Predicted G-alpha GTPa 97.2 0.0036 7.8E-08 56.1 10.0 265 49-314 25-343 (639)
200 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.3E-08 43.4 6.4 62 77-139 4-66 (69)
201 PF13432 TPR_16: Tetratricopep 97.1 0.0025 5.4E-08 42.3 6.7 53 120-173 6-58 (65)
202 PF13432 TPR_16: Tetratricopep 97.1 0.0021 4.5E-08 42.7 6.3 57 83-140 4-60 (65)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.22 4.9E-06 45.7 32.4 127 289-419 400-530 (660)
204 PF13281 DUF4071: Domain of un 97.0 0.22 4.8E-06 45.6 19.9 168 111-280 141-334 (374)
205 PF13414 TPR_11: TPR repeat; P 97.0 0.0044 9.5E-08 41.7 7.2 60 358-418 5-65 (69)
206 PRK10803 tol-pal system protei 97.0 0.017 3.6E-07 50.6 12.4 96 323-420 145-246 (263)
207 PF03704 BTAD: Bacterial trans 96.9 0.019 4.1E-07 45.6 11.4 69 184-253 65-138 (146)
208 KOG1920 IkappaB kinase complex 96.8 0.89 1.9E-05 47.3 25.6 112 292-419 914-1027(1265)
209 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.7E-07 40.0 7.5 53 86-139 5-57 (73)
210 PRK10803 tol-pal system protei 96.6 0.067 1.4E-06 46.9 13.3 97 289-385 146-246 (263)
211 KOG2280 Vacuolar assembly/sort 96.6 0.79 1.7E-05 45.1 28.4 340 105-484 426-792 (829)
212 PF03704 BTAD: Bacterial trans 96.6 0.024 5.3E-07 45.0 9.8 73 112-185 63-140 (146)
213 PF12921 ATP13: Mitochondrial 96.6 0.054 1.2E-06 41.3 10.8 54 386-439 47-101 (126)
214 PRK15331 chaperone protein Sic 96.6 0.28 6E-06 38.9 14.7 86 262-349 48-133 (165)
215 PF13371 TPR_9: Tetratricopept 96.5 0.024 5.1E-07 38.6 7.8 53 366-419 5-57 (73)
216 KOG1538 Uncharacterized conser 96.5 0.1 2.2E-06 50.1 13.9 90 320-420 746-846 (1081)
217 PRK15331 chaperone protein Sic 96.5 0.11 2.5E-06 41.0 12.0 87 191-279 47-133 (165)
218 KOG2041 WD40 repeat protein [G 96.4 1 2.3E-05 44.0 25.0 176 108-308 689-874 (1189)
219 PF12921 ATP13: Mitochondrial 96.4 0.062 1.3E-06 41.0 10.1 51 351-401 47-98 (126)
220 PF13424 TPR_12: Tetratricopep 96.4 0.012 2.6E-07 40.7 5.8 61 358-418 7-73 (78)
221 KOG1538 Uncharacterized conser 96.3 1.1 2.4E-05 43.4 19.7 55 251-314 747-801 (1081)
222 COG3898 Uncharacterized membra 96.3 0.8 1.7E-05 41.5 31.0 310 55-385 67-392 (531)
223 KOG2796 Uncharacterized conser 96.3 0.58 1.3E-05 39.9 25.5 139 289-430 180-323 (366)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.94 2E-05 41.9 31.4 383 60-455 28-531 (660)
225 PF13281 DUF4071: Domain of un 96.2 1.1 2.3E-05 41.3 21.3 169 145-315 140-334 (374)
226 PF13424 TPR_12: Tetratricopep 96.1 0.02 4.4E-07 39.5 5.9 63 322-384 6-74 (78)
227 PF07079 DUF1347: Protein of u 96.1 1.2 2.5E-05 41.4 37.1 139 85-228 15-179 (549)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.14 3E-06 47.6 12.2 64 320-385 74-141 (453)
229 smart00299 CLH Clathrin heavy 96.0 0.56 1.2E-05 36.8 14.9 125 289-436 10-135 (140)
230 COG4105 ComL DNA uptake lipopr 96.0 0.91 2E-05 38.9 20.7 58 222-280 173-233 (254)
231 PF10300 DUF3808: Protein of u 95.9 0.84 1.8E-05 44.1 17.8 176 236-418 177-374 (468)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.36 7.8E-06 45.0 14.1 67 73-140 72-141 (453)
233 COG1729 Uncharacterized protei 95.6 0.34 7.5E-06 41.7 12.2 97 323-420 144-244 (262)
234 KOG2610 Uncharacterized conser 95.6 0.39 8.4E-06 42.5 12.5 153 86-241 113-272 (491)
235 PF04053 Coatomer_WDAD: Coatom 95.6 0.59 1.3E-05 44.5 14.8 155 51-241 271-427 (443)
236 COG4105 ComL DNA uptake lipopr 95.4 1.5 3.3E-05 37.6 20.7 56 363-419 174-232 (254)
237 COG3118 Thioredoxin domain-con 95.4 1.7 3.7E-05 38.1 18.0 140 122-265 145-286 (304)
238 PF08631 SPO22: Meiosis protei 95.4 1.9 4.1E-05 38.5 25.8 164 252-418 85-273 (278)
239 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 35.3 16.5 43 221-264 12-54 (140)
240 KOG1258 mRNA processing protei 95.3 2.9 6.3E-05 40.4 32.6 383 42-439 46-488 (577)
241 COG3118 Thioredoxin domain-con 95.3 1.8 3.9E-05 37.9 17.3 148 154-304 142-290 (304)
242 PF04053 Coatomer_WDAD: Coatom 95.3 0.77 1.7E-05 43.8 14.5 158 84-275 269-426 (443)
243 KOG3941 Intermediate in Toll s 95.3 0.17 3.7E-06 43.4 9.0 34 198-231 140-173 (406)
244 PF09205 DUF1955: Domain of un 95.0 1.1 2.4E-05 33.9 15.3 62 324-386 89-150 (161)
245 KOG0543 FKBP-type peptidyl-pro 95.0 0.55 1.2E-05 42.8 12.0 60 289-349 260-319 (397)
246 PF10300 DUF3808: Protein of u 95.0 2.1 4.5E-05 41.5 16.9 180 94-280 175-376 (468)
247 PF08631 SPO22: Meiosis protei 94.9 2.7 5.8E-05 37.6 25.4 28 218-245 123-150 (278)
248 KOG3941 Intermediate in Toll s 94.9 0.27 5.9E-06 42.3 9.1 115 144-277 65-185 (406)
249 KOG0543 FKBP-type peptidyl-pro 94.8 0.75 1.6E-05 42.0 12.2 96 322-420 258-355 (397)
250 PRK11906 transcriptional regul 94.8 2.4 5.3E-05 39.8 15.7 148 56-206 273-432 (458)
251 PF13428 TPR_14: Tetratricopep 94.6 0.11 2.3E-06 31.0 4.7 27 114-140 4-30 (44)
252 COG3629 DnrI DNA-binding trans 94.6 0.56 1.2E-05 41.1 10.7 78 357-435 154-236 (280)
253 KOG4555 TPR repeat-containing 94.6 1.1 2.4E-05 33.7 10.5 51 333-384 55-105 (175)
254 PRK11906 transcriptional regul 94.5 4.3 9.3E-05 38.3 17.5 146 302-451 274-432 (458)
255 KOG4555 TPR repeat-containing 94.5 0.71 1.5E-05 34.8 9.4 92 294-386 51-145 (175)
256 COG3629 DnrI DNA-binding trans 94.4 0.53 1.1E-05 41.3 10.1 78 147-225 154-236 (280)
257 COG1729 Uncharacterized protei 94.3 1.3 2.9E-05 38.2 12.0 98 112-210 143-244 (262)
258 PF09205 DUF1955: Domain of un 94.2 1.8 3.9E-05 32.8 14.2 67 356-423 86-152 (161)
259 KOG2610 Uncharacterized conser 94.2 2.4 5.1E-05 37.8 13.5 154 262-418 114-274 (491)
260 KOG1585 Protein required for f 94.2 3.1 6.7E-05 35.4 14.7 23 221-243 36-58 (308)
261 PF07163 Pex26: Pex26 protein; 94.2 3.5 7.5E-05 35.9 14.1 118 52-169 46-181 (309)
262 PF13428 TPR_14: Tetratricopep 94.1 0.22 4.8E-06 29.7 5.2 41 77-118 2-42 (44)
263 KOG2114 Vacuolar assembly/sort 94.1 1.6 3.5E-05 43.7 13.5 179 78-277 336-516 (933)
264 KOG2114 Vacuolar assembly/sort 94.0 7.7 0.00017 39.2 25.4 175 45-242 338-516 (933)
265 PF09613 HrpB1_HrpK: Bacterial 94.0 2.5 5.5E-05 33.5 12.6 51 298-349 22-72 (160)
266 PF07035 Mic1: Colon cancer-as 93.8 2.9 6.2E-05 33.6 15.2 135 236-384 14-148 (167)
267 KOG1941 Acetylcholine receptor 93.8 2.5 5.3E-05 38.1 13.0 165 148-313 85-273 (518)
268 PF13512 TPR_18: Tetratricopep 93.6 2.7 5.9E-05 32.6 12.0 72 121-192 20-93 (142)
269 PF13170 DUF4003: Protein of u 93.3 6 0.00013 35.6 20.3 48 163-210 79-132 (297)
270 PF04184 ST7: ST7 protein; In 93.0 8.5 0.00018 36.6 19.6 57 187-243 265-322 (539)
271 KOG1585 Protein required for f 93.0 5.2 0.00011 34.1 16.4 206 77-309 32-250 (308)
272 COG1747 Uncharacterized N-term 93.0 8.6 0.00019 36.6 23.1 167 108-281 63-235 (711)
273 COG0457 NrfG FOG: TPR repeat [ 92.9 5.2 0.00011 34.0 29.9 200 217-420 60-265 (291)
274 PF04184 ST7: ST7 protein; In 92.7 9.3 0.0002 36.4 21.9 144 80-226 172-341 (539)
275 KOG1550 Extracellular protein 92.6 12 0.00026 37.3 25.4 182 92-281 228-427 (552)
276 PF09613 HrpB1_HrpK: Bacterial 92.4 4.7 0.0001 32.0 13.5 50 89-139 23-72 (160)
277 PF13176 TPR_7: Tetratricopept 92.3 0.35 7.6E-06 27.3 4.0 26 393-418 1-26 (36)
278 PF10602 RPN7: 26S proteasome 92.2 2.7 5.9E-05 34.4 10.6 60 78-137 38-99 (177)
279 KOG4570 Uncharacterized conser 92.2 2 4.3E-05 37.9 10.0 50 231-280 115-164 (418)
280 COG0457 NrfG FOG: TPR repeat [ 92.1 6.7 0.00015 33.3 29.5 201 182-385 60-265 (291)
281 PF07035 Mic1: Colon cancer-as 92.1 5.4 0.00012 32.1 15.9 30 169-198 17-46 (167)
282 PF13512 TPR_18: Tetratricopep 92.0 4.7 0.0001 31.3 11.7 73 85-157 19-93 (142)
283 PF10602 RPN7: 26S proteasome 92.0 2.9 6.3E-05 34.2 10.6 97 322-418 37-140 (177)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 92.0 1.4 3E-05 31.2 7.2 60 374-434 25-84 (103)
285 KOG1941 Acetylcholine receptor 92.0 9.4 0.0002 34.6 15.8 226 122-347 17-272 (518)
286 PF13929 mRNA_stabil: mRNA sta 91.9 8.4 0.00018 33.9 15.1 137 125-261 142-288 (292)
287 PF13176 TPR_7: Tetratricopept 91.8 0.44 9.5E-06 26.9 4.0 24 219-242 2-25 (36)
288 KOG1920 IkappaB kinase complex 91.6 21 0.00045 37.9 22.2 105 221-345 944-1050(1265)
289 COG4649 Uncharacterized protei 91.4 6.5 0.00014 31.6 14.2 123 52-174 69-195 (221)
290 KOG4570 Uncharacterized conser 91.2 3.9 8.4E-05 36.2 10.6 105 210-316 58-165 (418)
291 PF13929 mRNA_stabil: mRNA sta 91.0 10 0.00023 33.3 17.8 135 162-296 144-288 (292)
292 TIGR02561 HrpB1_HrpK type III 90.7 6.7 0.00015 30.6 12.4 19 157-175 55-73 (153)
293 PF02284 COX5A: Cytochrome c o 90.7 4.1 9E-05 29.3 8.5 60 374-434 28-87 (108)
294 PF02259 FAT: FAT domain; Int 90.6 14 0.00031 34.2 22.3 65 320-384 145-212 (352)
295 KOG2066 Vacuolar assembly/sort 90.5 21 0.00046 36.0 25.8 76 83-162 363-439 (846)
296 PF13431 TPR_17: Tetratricopep 90.3 0.44 9.5E-06 26.5 3.0 21 320-340 12-32 (34)
297 KOG1464 COP9 signalosome, subu 90.0 12 0.00026 32.4 18.7 200 141-342 21-252 (440)
298 PF13170 DUF4003: Protein of u 89.9 14 0.00031 33.2 21.1 127 234-362 80-223 (297)
299 PF13431 TPR_17: Tetratricopep 89.9 0.48 1E-05 26.3 2.9 20 111-130 13-32 (34)
300 TIGR02561 HrpB1_HrpK type III 89.8 8.2 0.00018 30.2 12.3 53 88-141 22-74 (153)
301 PF02284 COX5A: Cytochrome c o 89.7 5.8 0.00013 28.6 8.6 47 269-315 28-74 (108)
302 KOG1258 mRNA processing protei 89.6 21 0.00046 34.8 32.8 339 60-411 31-420 (577)
303 PRK15180 Vi polysaccharide bio 89.5 18 0.0004 34.2 13.9 128 82-212 295-422 (831)
304 PF04097 Nic96: Nup93/Nic96; 89.3 27 0.00057 35.4 17.6 216 46-280 116-356 (613)
305 PRK09687 putative lyase; Provi 89.2 16 0.00034 32.7 27.4 135 285-435 141-276 (280)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 4.1 9E-05 28.9 7.5 47 92-138 23-69 (103)
307 COG4785 NlpI Lipoprotein NlpI, 89.1 12 0.00027 31.3 14.4 67 108-175 96-162 (297)
308 PF00637 Clathrin: Region in C 89.0 0.42 9.2E-06 37.6 3.1 91 40-137 6-96 (143)
309 COG4649 Uncharacterized protei 88.6 11 0.00025 30.2 15.2 139 110-249 58-200 (221)
310 COG1747 Uncharacterized N-term 88.3 25 0.00054 33.7 26.2 177 250-434 65-247 (711)
311 PF00515 TPR_1: Tetratricopept 87.8 1.6 3.5E-05 23.9 4.2 24 395-418 5-28 (34)
312 PF13374 TPR_10: Tetratricopep 87.6 1.5 3.3E-05 25.3 4.3 29 391-419 2-30 (42)
313 KOG2063 Vacuolar assembly/sort 87.5 40 0.00087 35.3 17.3 116 183-298 506-638 (877)
314 COG4785 NlpI Lipoprotein NlpI, 86.5 18 0.0004 30.4 14.8 164 72-245 94-266 (297)
315 KOG0890 Protein kinase of the 86.4 72 0.0016 37.1 24.5 152 116-275 1388-1542(2382)
316 PF11207 DUF2989: Protein of u 86.3 8.9 0.00019 31.8 9.1 75 161-236 121-198 (203)
317 PF00515 TPR_1: Tetratricopept 86.1 2.4 5.2E-05 23.2 4.3 27 357-383 2-28 (34)
318 TIGR03504 FimV_Cterm FimV C-te 85.8 2.2 4.7E-05 25.4 4.1 24 397-420 5-28 (44)
319 PF11207 DUF2989: Protein of u 85.7 14 0.0003 30.7 9.9 79 121-201 117-198 (203)
320 COG3947 Response regulator con 85.2 26 0.00057 30.9 16.1 57 220-277 283-339 (361)
321 PF07719 TPR_2: Tetratricopept 85.1 2.7 5.8E-05 22.9 4.2 22 397-418 7-28 (34)
322 PF07719 TPR_2: Tetratricopept 84.9 2.9 6.3E-05 22.7 4.3 26 358-383 3-28 (34)
323 KOG1550 Extracellular protein 84.6 46 0.00099 33.3 26.6 246 162-421 228-505 (552)
324 PF13374 TPR_10: Tetratricopep 84.5 2.6 5.6E-05 24.3 4.2 28 217-244 3-30 (42)
325 PF10345 Cohesin_load: Cohesin 83.9 53 0.0011 33.4 32.0 64 368-431 373-452 (608)
326 PF00637 Clathrin: Region in C 83.3 0.67 1.5E-05 36.5 1.6 53 153-205 14-66 (143)
327 PF07163 Pex26: Pex26 protein; 82.2 22 0.00047 31.2 10.0 88 152-239 89-181 (309)
328 PF07721 TPR_4: Tetratricopept 81.6 2.4 5.1E-05 21.7 2.7 21 395-415 5-25 (26)
329 KOG4234 TPR repeat-containing 81.6 27 0.00057 29.0 9.7 94 81-175 100-197 (271)
330 COG4455 ImpE Protein of avirul 81.3 12 0.00027 31.4 7.9 50 50-100 10-59 (273)
331 PF07575 Nucleopor_Nup85: Nup8 80.6 67 0.0014 32.3 15.8 77 271-349 390-466 (566)
332 PF13181 TPR_8: Tetratricopept 80.4 5.4 0.00012 21.7 4.2 27 393-419 3-29 (34)
333 COG2976 Uncharacterized protei 80.3 32 0.00069 28.4 15.0 89 328-421 96-189 (207)
334 PF13762 MNE1: Mitochondrial s 80.0 27 0.00058 27.4 11.7 89 359-448 42-136 (145)
335 PF13174 TPR_6: Tetratricopept 79.7 3.2 7E-05 22.3 3.1 24 396-419 5-28 (33)
336 PF08424 NRDE-2: NRDE-2, neces 79.7 50 0.0011 30.3 17.2 98 73-172 16-128 (321)
337 KOG1464 COP9 signalosome, subu 79.6 41 0.0009 29.3 25.4 326 123-458 39-410 (440)
338 COG2909 MalT ATP-dependent tra 79.3 84 0.0018 32.6 28.4 222 192-416 426-684 (894)
339 COG4455 ImpE Protein of avirul 79.1 19 0.00041 30.3 8.3 77 288-365 3-81 (273)
340 KOG4077 Cytochrome c oxidase, 79.1 16 0.00034 27.6 7.1 42 378-419 71-112 (149)
341 PF13181 TPR_8: Tetratricopept 79.0 6 0.00013 21.4 4.2 27 218-244 3-29 (34)
342 KOG0276 Vesicle coat complex C 78.7 33 0.00073 33.6 10.9 101 296-417 647-747 (794)
343 COG2976 Uncharacterized protei 78.2 38 0.00082 28.1 12.6 129 76-211 54-189 (207)
344 TIGR03504 FimV_Cterm FimV C-te 78.2 6.1 0.00013 23.5 4.0 23 222-244 5-27 (44)
345 KOG4234 TPR repeat-containing 77.3 41 0.00088 28.0 10.3 20 365-384 177-196 (271)
346 PF08424 NRDE-2: NRDE-2, neces 77.2 59 0.0013 29.8 17.5 117 304-422 49-185 (321)
347 PRK11619 lytic murein transgly 77.1 91 0.002 31.9 30.8 77 115-197 103-179 (644)
348 KOG4648 Uncharacterized conser 76.3 25 0.00053 31.8 8.8 89 259-349 105-193 (536)
349 PF07575 Nucleopor_Nup85: Nup8 76.3 90 0.0019 31.4 19.1 93 288-384 374-466 (566)
350 KOG0890 Protein kinase of the 75.9 1.7E+02 0.0037 34.4 26.2 150 83-240 1390-1542(2382)
351 COG2909 MalT ATP-dependent tra 75.6 1.1E+02 0.0023 31.9 28.4 225 157-381 426-684 (894)
352 KOG4077 Cytochrome c oxidase, 75.5 25 0.00054 26.6 7.3 46 340-385 68-113 (149)
353 PF04190 DUF410: Protein of un 75.3 58 0.0013 28.7 18.7 136 320-476 89-242 (260)
354 PF06552 TOM20_plant: Plant sp 75.1 31 0.00067 28.1 8.3 64 58-123 8-81 (186)
355 PF11848 DUF3368: Domain of un 74.6 14 0.0003 22.5 5.1 34 401-434 12-45 (48)
356 PF06552 TOM20_plant: Plant sp 73.2 50 0.0011 27.0 9.3 73 340-422 54-138 (186)
357 KOG0276 Vesicle coat complex C 73.0 58 0.0013 32.1 10.9 130 45-207 618-747 (794)
358 KOG4648 Uncharacterized conser 72.9 23 0.00049 32.0 7.8 94 83-180 104-197 (536)
359 KOG2471 TPR repeat-containing 72.8 93 0.002 29.9 16.0 104 331-436 250-379 (696)
360 KOG0991 Replication factor C, 72.4 62 0.0013 27.8 14.8 37 389-426 237-273 (333)
361 PF11846 DUF3366: Domain of un 71.5 22 0.00047 29.7 7.4 34 387-420 140-173 (193)
362 COG3947 Response regulator con 69.8 81 0.0018 28.1 17.7 57 361-418 284-340 (361)
363 PHA02875 ankyrin repeat protei 69.8 84 0.0018 30.0 12.0 211 49-285 7-229 (413)
364 PF10579 Rapsyn_N: Rapsyn N-te 69.6 12 0.00025 25.6 4.1 46 368-413 18-65 (80)
365 PF11663 Toxin_YhaV: Toxin wit 69.5 4.9 0.00011 30.6 2.7 35 50-86 104-138 (140)
366 PF10579 Rapsyn_N: Rapsyn N-te 69.5 14 0.00031 25.2 4.6 53 398-451 14-68 (80)
367 PF02259 FAT: FAT domain; Int 68.3 1E+02 0.0022 28.5 25.1 54 82-139 4-57 (352)
368 PF10345 Cohesin_load: Cohesin 66.9 1.5E+02 0.0033 30.1 37.7 163 114-277 62-251 (608)
369 TIGR02508 type_III_yscG type I 66.8 46 0.001 24.1 8.5 78 92-176 21-98 (115)
370 KOG4507 Uncharacterized conser 66.6 50 0.0011 32.4 9.0 132 58-192 590-721 (886)
371 PHA02875 ankyrin repeat protei 66.5 1.2E+02 0.0027 28.9 15.2 13 445-457 299-311 (413)
372 PRK09687 putative lyase; Provi 65.6 1E+02 0.0022 27.6 28.8 233 144-401 35-277 (280)
373 KOG4507 Uncharacterized conser 65.0 66 0.0014 31.6 9.5 88 122-210 618-705 (886)
374 PF09670 Cas_Cas02710: CRISPR- 64.0 1.1E+02 0.0024 28.8 11.1 55 330-385 140-198 (379)
375 COG0735 Fur Fe2+/Zn2+ uptake r 63.4 53 0.0011 25.9 7.5 60 65-125 10-69 (145)
376 KOG2471 TPR repeat-containing 61.7 1.6E+02 0.0034 28.5 14.7 106 261-368 250-381 (696)
377 PF12862 Apc5: Anaphase-promot 61.6 56 0.0012 23.3 6.9 53 367-419 9-69 (94)
378 cd00280 TRFH Telomeric Repeat 61.4 74 0.0016 26.1 7.9 48 92-139 85-139 (200)
379 KOG0686 COP9 signalosome, subu 60.7 1.5E+02 0.0032 27.9 14.1 64 182-245 151-216 (466)
380 KOG2297 Predicted translation 60.3 1.3E+02 0.0028 27.0 14.3 43 60-103 149-194 (412)
381 cd08819 CARD_MDA5_2 Caspase ac 60.1 57 0.0012 22.9 6.5 14 230-243 50-63 (88)
382 PF14689 SPOB_a: Sensor_kinase 59.5 28 0.0006 22.6 4.5 30 390-419 22-51 (62)
383 smart00028 TPR Tetratricopepti 59.2 15 0.00033 18.6 3.0 27 393-419 3-29 (34)
384 KOG4642 Chaperone-dependent E3 58.8 1.2E+02 0.0026 26.2 10.9 80 90-172 24-104 (284)
385 PF00244 14-3-3: 14-3-3 protei 58.1 1.3E+02 0.0027 26.2 10.5 39 222-260 7-45 (236)
386 PF04762 IKI3: IKI3 family; I 58.0 2.7E+02 0.0059 30.1 15.1 22 47-68 700-721 (928)
387 PF11838 ERAP1_C: ERAP1-like C 58.0 1.5E+02 0.0032 27.0 19.8 148 302-454 146-303 (324)
388 KOG2034 Vacuolar sorting prote 57.6 2.5E+02 0.0054 29.5 22.8 274 84-383 366-688 (911)
389 COG5159 RPN6 26S proteasome re 57.5 1.4E+02 0.003 26.5 15.8 128 45-172 7-151 (421)
390 PF04910 Tcf25: Transcriptiona 56.8 1.7E+02 0.0037 27.3 21.3 57 153-209 110-167 (360)
391 KOG2422 Uncharacterized conser 56.6 2.1E+02 0.0046 28.3 19.9 90 329-418 350-446 (665)
392 COG0735 Fur Fe2+/Zn2+ uptake r 56.1 75 0.0016 25.0 7.3 60 205-265 10-69 (145)
393 PF11663 Toxin_YhaV: Toxin wit 55.6 15 0.00033 28.1 3.1 30 194-225 108-137 (140)
394 PF14689 SPOB_a: Sensor_kinase 55.4 36 0.00078 22.1 4.5 22 116-137 28-49 (62)
395 KOG0991 Replication factor C, 55.2 1.4E+02 0.003 25.8 13.1 47 353-401 236-282 (333)
396 PF11848 DUF3368: Domain of un 54.6 47 0.001 20.2 5.1 28 88-115 14-41 (48)
397 PF09670 Cas_Cas02710: CRISPR- 54.6 1.9E+02 0.0042 27.3 11.8 53 51-104 141-197 (379)
398 cd08819 CARD_MDA5_2 Caspase ac 54.3 74 0.0016 22.4 7.4 34 123-161 48-81 (88)
399 COG5187 RPN7 26S proteasome re 52.7 1.7E+02 0.0037 26.1 13.8 26 252-277 116-141 (412)
400 KOG2908 26S proteasome regulat 52.6 1.9E+02 0.0041 26.5 10.1 57 258-314 82-143 (380)
401 PRK15180 Vi polysaccharide bio 52.5 2.2E+02 0.0049 27.4 26.6 127 47-176 295-421 (831)
402 KOG2396 HAT (Half-A-TPR) repea 52.4 2.3E+02 0.005 27.5 33.9 366 44-419 108-558 (568)
403 PF13762 MNE1: Mitochondrial s 52.4 1.1E+02 0.0025 24.0 12.5 83 184-266 42-130 (145)
404 KOG0687 26S proteasome regulat 51.9 1.9E+02 0.0041 26.3 15.2 97 287-385 105-210 (393)
405 PRK10564 maltose regulon perip 51.5 35 0.00075 30.4 5.1 36 324-359 260-295 (303)
406 PF11846 DUF3366: Domain of un 51.5 89 0.0019 26.0 7.6 30 179-208 142-171 (193)
407 COG5108 RPO41 Mitochondrial DN 51.2 89 0.0019 31.3 8.0 91 326-419 33-131 (1117)
408 KOG4567 GTPase-activating prot 51.0 1.1E+02 0.0025 27.4 7.9 57 306-367 263-319 (370)
409 PRK10941 hypothetical protein; 50.9 1.8E+02 0.0039 25.8 10.9 55 329-384 189-243 (269)
410 KOG1308 Hsp70-interacting prot 50.6 12 0.00027 33.7 2.3 95 333-430 126-221 (377)
411 cd00280 TRFH Telomeric Repeat 50.3 1.4E+02 0.0031 24.5 11.4 21 329-349 119-139 (200)
412 PRK10564 maltose regulon perip 50.1 37 0.00079 30.3 5.0 30 394-423 260-289 (303)
413 PF10366 Vps39_1: Vacuolar sor 49.8 1E+02 0.0022 22.8 7.4 27 393-419 41-67 (108)
414 PF12926 MOZART2: Mitotic-spin 49.6 89 0.0019 21.9 7.9 43 97-139 29-71 (88)
415 PF14853 Fis1_TPR_C: Fis1 C-te 48.8 65 0.0014 20.1 5.8 33 397-431 7-39 (53)
416 KOG2062 26S proteasome regulat 48.8 3.2E+02 0.007 28.1 28.6 184 59-245 41-239 (929)
417 COG0790 FOG: TPR repeat, SEL1 48.0 2E+02 0.0044 25.7 22.1 150 89-247 54-222 (292)
418 COG5108 RPO41 Mitochondrial DN 46.8 1.4E+02 0.0031 30.0 8.7 91 80-173 32-130 (1117)
419 PF14853 Fis1_TPR_C: Fis1 C-te 46.8 70 0.0015 20.0 4.7 20 365-384 10-29 (53)
420 smart00386 HAT HAT (Half-A-TPR 46.5 43 0.00093 17.4 4.0 29 405-434 1-29 (33)
421 KOG1308 Hsp70-interacting prot 46.3 18 0.00039 32.7 2.6 97 86-184 124-220 (377)
422 PF10475 DUF2450: Protein of u 46.2 2.1E+02 0.0045 25.8 9.5 25 185-209 131-155 (291)
423 PF09868 DUF2095: Uncharacteri 46.1 1.2E+02 0.0025 22.6 6.1 27 45-71 65-91 (128)
424 KOG0686 COP9 signalosome, subu 45.6 2.7E+02 0.0058 26.3 15.5 65 146-210 150-216 (466)
425 PF04097 Nic96: Nup93/Nic96; 45.5 3.5E+02 0.0076 27.6 26.7 86 224-314 266-355 (613)
426 PF12862 Apc5: Anaphase-promot 45.2 85 0.0019 22.3 5.6 71 401-471 8-86 (94)
427 COG5159 RPN6 26S proteasome re 45.2 2.3E+02 0.0049 25.3 15.2 126 82-207 9-151 (421)
428 KOG1498 26S proteasome regulat 44.6 2.7E+02 0.0059 26.1 16.3 104 325-435 135-257 (439)
429 PRK10941 hypothetical protein; 44.0 2.3E+02 0.0051 25.2 10.6 76 149-225 184-260 (269)
430 TIGR02508 type_III_yscG type I 43.5 1.3E+02 0.0027 22.0 8.2 50 190-245 48-97 (115)
431 KOG2066 Vacuolar assembly/sort 43.4 4E+02 0.0086 27.7 27.1 155 45-209 360-533 (846)
432 PF02184 HAT: HAT (Half-A-TPR) 43.4 57 0.0012 17.9 3.4 11 408-418 4-14 (32)
433 KOG2908 26S proteasome regulat 42.8 2.7E+02 0.0059 25.6 9.7 55 330-384 84-143 (380)
434 PF09986 DUF2225: Uncharacteri 42.4 2.2E+02 0.0047 24.3 11.3 62 362-423 124-197 (214)
435 KOG1811 Predicted Zn2+-binding 42.3 3.2E+02 0.007 27.2 10.1 68 390-459 586-653 (1141)
436 PF02847 MA3: MA3 domain; Int 42.2 1.3E+02 0.0027 22.2 6.5 21 222-242 8-28 (113)
437 KOG4567 GTPase-activating prot 42.2 2.6E+02 0.0057 25.2 9.3 43 202-244 264-306 (370)
438 PF03745 DUF309: Domain of unk 41.7 97 0.0021 20.1 5.9 18 87-104 10-27 (62)
439 PF11817 Foie-gras_1: Foie gra 41.5 1.8E+02 0.0038 25.5 8.1 55 362-416 184-243 (247)
440 PRK11639 zinc uptake transcrip 40.9 1.7E+02 0.0037 23.8 7.3 44 222-265 31-74 (169)
441 PF11817 Foie-gras_1: Foie gra 40.3 1.7E+02 0.0037 25.6 7.8 56 151-206 183-243 (247)
442 PF10366 Vps39_1: Vacuolar sor 39.7 1.5E+02 0.0034 21.8 7.6 26 114-139 42-67 (108)
443 PF04090 RNA_pol_I_TF: RNA pol 39.0 2.2E+02 0.0049 23.8 7.7 28 323-350 43-70 (199)
444 PF04090 RNA_pol_I_TF: RNA pol 39.0 1.6E+02 0.0035 24.6 6.9 29 78-106 43-71 (199)
445 PF09454 Vps23_core: Vps23 cor 39.0 96 0.0021 20.4 4.5 43 322-365 9-51 (65)
446 PF09454 Vps23_core: Vps23 cor 38.8 84 0.0018 20.7 4.2 29 113-141 10-38 (65)
447 PRK13342 recombination factor 38.3 3.7E+02 0.0079 25.8 19.5 34 230-263 244-277 (413)
448 PF12926 MOZART2: Mitotic-spin 38.2 1.4E+02 0.003 21.0 7.6 42 202-243 29-70 (88)
449 PF14561 TPR_20: Tetratricopep 38.1 1.4E+02 0.0031 21.1 8.6 32 109-140 20-51 (90)
450 KOG4642 Chaperone-dependent E3 37.8 2.7E+02 0.0059 24.2 10.9 115 53-170 22-141 (284)
451 KOG0376 Serine-threonine phosp 37.8 1.2E+02 0.0025 29.1 6.5 52 262-315 15-67 (476)
452 PF07064 RIC1: RIC1; InterPro 37.5 2.9E+02 0.0063 24.4 14.6 24 46-69 87-110 (258)
453 PF08311 Mad3_BUB1_I: Mad3/BUB 37.5 1.9E+02 0.004 22.1 9.2 43 374-416 81-124 (126)
454 PF09868 DUF2095: Uncharacteri 36.9 1.5E+02 0.0034 21.9 5.6 29 83-112 68-96 (128)
455 PRK13342 recombination factor 36.8 3.9E+02 0.0084 25.6 19.3 62 326-387 232-301 (413)
456 KOG1498 26S proteasome regulat 36.7 3.7E+02 0.0079 25.3 16.4 192 45-245 17-241 (439)
457 PF04910 Tcf25: Transcriptiona 36.4 3.7E+02 0.0079 25.2 17.5 29 320-348 39-67 (360)
458 KOG3364 Membrane protein invol 35.0 2.2E+02 0.0047 22.2 10.3 68 353-420 29-100 (149)
459 KOG0376 Serine-threonine phosp 34.9 1.1E+02 0.0025 29.2 6.0 21 49-69 12-32 (476)
460 KOG3824 Huntingtin interacting 34.0 3.6E+02 0.0078 24.4 8.7 53 87-140 127-179 (472)
461 PF03745 DUF309: Domain of unk 34.0 1.3E+02 0.0029 19.5 5.2 14 124-137 12-25 (62)
462 COG0790 FOG: TPR repeat, SEL1 34.0 3.4E+02 0.0075 24.2 24.1 152 52-212 52-222 (292)
463 KOG1839 Uncharacterized protei 33.9 7E+02 0.015 27.8 12.1 27 109-135 971-997 (1236)
464 PRK09857 putative transposase; 33.9 3.6E+02 0.0078 24.4 9.1 66 114-180 209-274 (292)
465 COG5187 RPN7 26S proteasome re 32.8 3.7E+02 0.0079 24.1 13.3 24 322-345 116-139 (412)
466 PF15297 CKAP2_C: Cytoskeleton 32.6 4.1E+02 0.0088 24.6 9.0 62 373-436 120-185 (353)
467 PRK09857 putative transposase; 32.5 3.8E+02 0.0082 24.2 10.9 66 359-425 209-274 (292)
468 KOG0687 26S proteasome regulat 32.4 4E+02 0.0086 24.4 15.2 39 183-221 106-148 (393)
469 cd07153 Fur_like Ferric uptake 32.1 1.6E+02 0.0035 21.8 5.6 43 153-195 7-49 (116)
470 PRK11619 lytic murein transgly 31.8 5.9E+02 0.013 26.2 37.1 293 108-415 126-463 (644)
471 PF09477 Type_III_YscG: Bacter 31.8 2.1E+02 0.0046 21.1 9.1 90 54-151 19-108 (116)
472 COG2137 OraA Uncharacterized p 31.7 2.9E+02 0.0063 22.6 8.7 73 340-416 54-126 (174)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 31.5 2.4E+02 0.0051 21.6 8.9 43 164-206 81-124 (126)
474 PRK11639 zinc uptake transcrip 31.2 2.9E+02 0.0063 22.4 7.6 45 151-195 30-74 (169)
475 KOG3636 Uncharacterized conser 31.1 4.8E+02 0.01 25.0 9.5 97 62-159 169-273 (669)
476 KOG2422 Uncharacterized conser 30.8 5.6E+02 0.012 25.6 18.2 92 153-244 349-447 (665)
477 PF02631 RecX: RecX family; I 30.4 2.4E+02 0.0051 21.2 8.7 50 338-388 9-58 (121)
478 COG4259 Uncharacterized protei 30.3 2.2E+02 0.0047 20.7 5.4 16 436-451 82-97 (121)
479 PF10255 Paf67: RNA polymerase 29.2 5.1E+02 0.011 24.7 11.2 173 182-362 123-318 (404)
480 cd07153 Fur_like Ferric uptake 29.2 1.6E+02 0.0035 21.8 5.2 45 222-266 6-50 (116)
481 PRK09462 fur ferric uptake reg 28.9 2.9E+02 0.0063 21.7 7.4 58 207-265 8-66 (148)
482 PF01475 FUR: Ferric uptake re 28.7 1.5E+02 0.0033 22.2 5.0 46 150-195 11-56 (120)
483 PF15297 CKAP2_C: Cytoskeleton 28.2 4.8E+02 0.011 24.1 9.6 63 268-332 120-186 (353)
484 KOG3364 Membrane protein invol 28.0 2.9E+02 0.0064 21.5 8.6 18 191-208 81-98 (149)
485 KOG2659 LisH motif-containing 27.8 3.9E+02 0.0085 22.9 11.6 20 328-347 71-90 (228)
486 KOG2659 LisH motif-containing 27.5 4E+02 0.0086 22.9 9.4 19 154-172 72-90 (228)
487 KOG3677 RNA polymerase I-assoc 27.4 5E+02 0.011 24.7 8.5 22 116-137 240-261 (525)
488 KOG2063 Vacuolar assembly/sort 27.1 8E+02 0.017 26.3 19.5 37 226-262 601-637 (877)
489 PRK09462 fur ferric uptake reg 26.9 3.1E+02 0.0068 21.5 7.5 35 196-230 32-66 (148)
490 TIGR02270 conserved hypothetic 26.6 5.8E+02 0.013 24.5 26.3 23 395-417 256-278 (410)
491 TIGR02710 CRISPR-associated pr 26.4 5.6E+02 0.012 24.2 10.2 54 328-381 137-196 (380)
492 KOG1839 Uncharacterized protei 26.0 9.6E+02 0.021 26.8 11.4 63 181-243 973-1042(1236)
493 PF10475 DUF2450: Protein of u 25.8 5E+02 0.011 23.4 13.6 131 291-434 103-238 (291)
494 PF12069 DUF3549: Protein of u 25.6 5.4E+02 0.012 23.8 14.4 134 187-329 172-306 (340)
495 PF12037 DUF3523: Domain of un 25.5 1.9E+02 0.0041 25.7 5.4 34 35-68 22-58 (276)
496 KOG2582 COP9 signalosome, subu 25.5 5.6E+02 0.012 23.9 17.0 286 39-351 37-346 (422)
497 PF04762 IKI3: IKI3 family; I 25.5 9E+02 0.02 26.3 13.4 45 393-441 814-860 (928)
498 PF01475 FUR: Ferric uptake re 25.4 1.5E+02 0.0033 22.2 4.5 45 221-265 12-56 (120)
499 PF04190 DUF410: Protein of un 25.4 4.8E+02 0.01 23.1 17.0 25 110-134 89-113 (260)
500 PF04124 Dor1: Dor1-like famil 25.1 2.3E+02 0.0049 26.3 6.3 38 360-397 110-148 (338)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-62 Score=494.44 Aligned_cols=438 Identities=19% Similarity=0.272 Sum_probs=393.1
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCC--------------------------------CCHHhHHHHHHHHHhcCC
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSK--------------------------------HSYPSYASLIYKLARARD 91 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~ll~~~~~~~~ 91 (491)
...+...+++.|++++|+++|++|...|+. ||..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 345777788889999999999999887753 677889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD 171 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (491)
++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041882 172 ADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE--REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP 249 (491)
Q Consensus 172 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (491)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999976 5788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 250 NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.+|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHH
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 409 (491)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------------------CCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 410 ACFVLEEMEKRKMRFDLKAWEGLVTDACIG------------------------DGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------------------------~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
|.+++++|.+.|+.||..+|++++.. |.. +....++..+++|.+.|+.|+.....
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIgl-c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGL-CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999864 331 11245788899999999999876655
Q ss_pred HHHHHHhcCCCcchhhhh
Q 041882 466 VDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 466 ~~l~~~~~~~g~~~~~~~ 483 (491)
.-++ -+...+....+..
T Consensus 852 ~vL~-cl~~~~~~~~~~~ 868 (1060)
T PLN03218 852 QVLG-CLQLPHDATLRNR 868 (1060)
T ss_pred HHHH-HhcccccHHHHHH
Confidence 5443 3444454444433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-62 Score=491.14 Aligned_cols=431 Identities=21% Similarity=0.258 Sum_probs=400.0
Q ss_pred CCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 41 TKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
...++.++..+++.|+++.|+++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCChH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK--MGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
+|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAAT 358 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (491)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----C-------------------CCHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----G-------------------GKVDDACFVLE 415 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~ 415 (491)
|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876432 1 22467999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 041882 416 EMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTY 472 (491)
Q Consensus 416 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~ 472 (491)
+|.+.|+.||..+|+.++.+++..++...+...++.|...+..|+ ...+..+..-+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~-~~~y~~Li~g~ 892 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK-QSNLSTLVDGF 892 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc-hhhhHHHHHhh
Confidence 999999999999999999877766665555555555554444343 34455555544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-61 Score=483.68 Aligned_cols=428 Identities=20% Similarity=0.258 Sum_probs=396.4
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
.|...+..+.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.|+..+++.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56778899999999999999999998764 68999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------------------
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI------------------- 182 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------------------- 182 (491)
++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999975 799999999999999999999999999998777666554
Q ss_pred ----------------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 183 ----------------SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 183 ----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+|+.|+.+|++.|++++|.++|+.|.. +|..+||.++.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 456777888899999999999998865 488999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 247 TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI 326 (491)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (491)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||..+||.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 58899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHcCC
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT-SRHCPRLETFSCLLVGLLKGG 405 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 405 (491)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 489999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHh
Q 041882 406 KVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQ 485 (491)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 485 (491)
++++|.+++++| ++.|+..+|++|+.+++..|+.+.+...++++.+ ++|++...+..+...|.+.|+|+++..++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999998765 5789999999999999999998888888888754 45888888999999999999999999987
Q ss_pred hh
Q 041882 486 KR 487 (491)
Q Consensus 486 k~ 487 (491)
+.
T Consensus 552 ~~ 553 (697)
T PLN03081 552 ET 553 (697)
T ss_pred HH
Confidence 64
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-59 Score=478.09 Aligned_cols=430 Identities=18% Similarity=0.228 Sum_probs=368.0
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....|+.++..+.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999975 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA- 278 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 278 (491)
|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998888888888888888888888888888777754 244455555555555555555555555554
Q ss_pred ---------------------------------HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041882 279 ---------------------------------YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325 (491)
Q Consensus 279 ---------------------------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (491)
+.|+.++..++++++.+|+++|++++|.++|+.+ .+|..+||
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 4444455555555566666666667776666665 46888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHcC
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAML-TSRHCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 404 (491)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998 568899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 405 GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
|++++|.+++++|. ++||..+|++|+.+|...++.+.+....+++.+ ++|++...++.++++|...|+|+++...
T Consensus 639 G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 639 GKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999884 789999999999986666665555444555554 5699999999999999999999999999
Q ss_pred hhh
Q 041882 485 QKR 487 (491)
Q Consensus 485 ~k~ 487 (491)
|+.
T Consensus 714 r~~ 716 (857)
T PLN03077 714 RKT 716 (857)
T ss_pred HHH
Confidence 864
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-57 Score=468.48 Aligned_cols=439 Identities=18% Similarity=0.204 Sum_probs=337.2
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....|+.++..+.+.|++++|+.+|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.|+.++..+++.++.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 34457788888999999999999999999889999999999999888888888888888888888888888888899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.|+++.|.++|++|.. +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 99999999999999998875 67788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888888878877777777777777777777777777642 4666777777777777777777777777777
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI---------- 349 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------- 349 (491)
.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 7777777777777777777777777777666666666666666666666666666666666555555432
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------------------
Q 041882 350 --------------------GGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH---------------------- 387 (491)
Q Consensus 350 --------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------- 387 (491)
.++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 13455555555555444444444444444333333332
Q ss_pred --------CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh-hhhhh
Q 041882 388 --------CPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR-DYSMA 458 (491)
Q Consensus 388 --------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~-~~~~~ 458 (491)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..+++.+.++.|. +.|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 356667888888888888888899999999988899999999999998888888888888888888 67888
Q ss_pred hhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 459 ISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
|+. ..+..+...|.+.|+.+++..+-++
T Consensus 623 P~~-~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 623 PNL-KHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred Cch-HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 865 5567777888888888888877553
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-54 Score=433.82 Aligned_cols=400 Identities=17% Similarity=0.232 Sum_probs=279.4
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH
Q 041882 72 SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN 150 (491)
Q Consensus 72 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (491)
...+..+|+.++..+.+.|++++|.++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..|...|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999765 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH--------
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL-------- 222 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 222 (491)
.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 489999999999999999999999999999888777776666554
Q ss_pred ---------------------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 223 ---------------------------IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 223 ---------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555555555555555532 355555555555555555555555555
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (491)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 5555555555555666666665555555566665555555555555556666666666666666666655554 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK-RKMRFDLKAWEGLVT 434 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~ 434 (491)
..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5556666666666666666666666665555556666666666666666666666666666553 355566556666666
Q ss_pred HHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 435 DACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 435 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
++++.|+.++|.+.+++| +..|+. ..+..+...+...|+.+.+...-++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTV-NMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 666666555555555443 233433 3355555555555555555444433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.1e-27 Score=249.86 Aligned_cols=423 Identities=13% Similarity=0.077 Sum_probs=238.2
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
++..+.+.|++++|+.+++.+.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 4455566677777777776666532 4455667777777777777777777777776654 4455566666677777777
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
+++|.+.|+++...+. .+..++..+...+...|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.
T Consensus 515 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777665542 255666666666666777777777776665543 22444555566666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL 286 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (491)
+.+.. +.+...|..+..++...|++++|...|+.+.+... .+...+..+..++...|++++|...++.+.+.. +.+.
T Consensus 593 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 593 AADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 65542 33555666666666666666666666666665432 244555566666666666666666666665543 3334
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
..+..+...+...|++++|..+++.+.+.++. +...+..+...+...|++++|.+.++++... .|+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 45555555555566666666666555554332 4445555555555555555555555555543 23334444455555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchh
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 446 (491)
...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.. ..+...++.+...+...|+ .+++
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHH
Confidence 55555555555555555432 2344445555555555555555555555555432 2234444444444444444 3344
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 447 VEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 447 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
..+++.... .|+++..+..+++++...|++.++..+
T Consensus 824 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 824 EYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 444433332 144444444444444444444444444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.2e-27 Score=249.72 Aligned_cols=431 Identities=12% Similarity=0.050 Sum_probs=379.2
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3456677888999999999999998764 5566788889999999999999999999999876 6678899999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
.|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 3477888999999999999999999999998764 45778899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
|+.+.+... .+...+..+..++...|++++|..+|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +
T Consensus 624 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 999988643 367788999999999999999999999998864 3367889999999999999999999999999876 5
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
.+...+..+...+...|++++|...|+.+...+. +..++..++.++.+.|++++|.+.++++.+.. +.+...+..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6677888889999999999999999999998754 44677788999999999999999999998764 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCc
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNA 443 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 443 (491)
..|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|...++++.+.. .-+...+..+...+...|+.+
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999874 4578889999999999999 88999999998763 335677888888899999999
Q ss_pred chhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 444 GGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 444 ~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
++...++++.+.+ |.++.....+++.|.+.|++.++..+.++.+
T Consensus 855 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999876 7788999999999999999999998877643
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=7.4e-22 Score=178.58 Aligned_cols=429 Identities=13% Similarity=0.060 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 041882 33 QNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKET 112 (491)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 112 (491)
+...+.........+...+-+.|++.+|++.....-+.+ +.+....-.+-..+.+..+++....--....+.. +.-.+
T Consensus 40 q~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae 117 (966)
T KOG4626|consen 40 QFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAE 117 (966)
T ss_pred HhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHH
Confidence 333444455556777888888999999998766544432 1122222222223333333333333222222222 33345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH----------
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI---------- 182 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------- 182 (491)
+|..+.+.+...|++++|+.+++.+.+.... ....|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 5555555555555555555555555554322 4455555555555555555555555554443 23332
Q ss_pred -------------------------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 183 -------------------------SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 183 -------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
.|..|...+...|+...|++.|++....+.. -...|-.|...|...+.+++|+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHH
Confidence 3344444444445555555555444443211 23344445555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
.|.+...... .....+..+...|...|..+.|++.|++.++. .|+ ...|+.+..++-..|++.+|+..|++.....
T Consensus 274 ~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 5554443311 12334444444455555555555555555544 222 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhH
Q 041882 317 YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR-LETF 394 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 394 (491)
.. .....+.|...|...|.+++|..+|....+- .|.. ..++.|...|-++|++++|+..+++.+. +.|+ ...|
T Consensus 351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 22 3444455555555555555555555555442 2322 2444555555555555555555555554 3343 3345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhc
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYL 473 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 473 (491)
+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|.+.+-..|+..+++.-+++.... .|+.+....+++..+-
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 5555555555555555555555553 2333 234455555555555555555555543332 2555555555554443
Q ss_pred CCCcch
Q 041882 474 GMGTCV 479 (491)
Q Consensus 474 ~~g~~~ 479 (491)
-.-+|.
T Consensus 502 ~vcdw~ 507 (966)
T KOG4626|consen 502 IVCDWT 507 (966)
T ss_pred HHhccc
Confidence 333333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.3e-21 Score=184.94 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=198.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCC
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN---LISFNVMIKGRLKKGE 196 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 196 (491)
.+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44566777777777777776642 2556677777777777777777777777766432211 2345666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHH
Q 041882 197 WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~ 272 (491)
++.|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777642 235667777777777777777777777777765433221 234455556667777777777
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC 352 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 352 (491)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777776653 23344556666777777777777777777766533323455667777777777777777777777664
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 353 KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK---GGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 355555566677777777777777777777664 3666666666665553 457777777777777666666554
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=9.2e-20 Score=192.90 Aligned_cols=426 Identities=11% Similarity=0.029 Sum_probs=274.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
....+...|++++|++.|+.+.+.+ +++.. ............|++++|.+.++.+.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446778899999999999888754 34432 12122222234588999999999988876 667788888888888899
Q ss_pred CHHHHHHHHHHhhhCCCC------------------cC-HHHH----------------------------------HHH
Q 041882 126 LVDKAIEVFNRMTSFDCV------------------RT-LQSF----------------------------------NSL 152 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~------------------~~-~~~~----------------------------------~~l 152 (491)
+.++|+..++++...... +. ...+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999988887542100 00 0000 011
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHH-----------
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP-TVVTYN----------- 220 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~----------- 220 (491)
...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 344566788999999999888763 2267778888888899999999999998888754321 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH--------
Q 041882 221 -SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV-------- 291 (491)
Q Consensus 221 -~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 291 (491)
.....+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|++..+.. +.+...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 223456788889999999998887643 356677778888888899999999888887653 222222222
Q ss_pred ----------------------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 292 ----------------------------------LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 292 ----------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 223345678888888888888877554 667777788888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------------------------------HHHhcCCHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVD--------------------------------------------GFLRVEDFE 373 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~--------------------------------------------~~~~~~~~~ 373 (491)
++|...++++.+.. +.+...+..+.. .+...|+++
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99888888877542 222222222222 222333333
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+|..+++ . .+.+...+..+...+.+.|++++|+..|+++.+.. ..+...+..+...+...|+.+++.+.+....
T Consensus 591 eA~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3333332 0 12334445556666666677777777777666542 2245566666666666666666666666444
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 454 DYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
+. .|++......+++++.+.|+++++..+.++
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33 356666666666666666666666655444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.6e-20 Score=184.46 Aligned_cols=380 Identities=14% Similarity=0.044 Sum_probs=295.9
Q ss_pred CCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 41 TKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
....+-++..+.+.|+++.|+.+++...... +.+...+..++..+...|+++.|.+.++.+.... |.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445678889999999999999999988765 4456677777788888999999999999999887 6678889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+...|++++|+..+++..... +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998865 336788999999999999999999999988765422 23333333 347889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH----HHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNE----AKKMMFD 276 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 276 (491)
...++.+......++...+..+..++...|++++|+..++++.+.... +...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887654445555566678889999999999999999987533 67788889999999999986 7999999
Q ss_pred HHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (491)
..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 88774 445678888999999999999999999999987655 6777888899999999999999999999875 3554
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041882 357 A-TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE----TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWE 430 (491)
Q Consensus 357 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (491)
. .+..+..++...|++++|...|+++.+........ ....+-.++...+...+...+..++.-..-..|..+|+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 430 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWE 430 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHH
Confidence 3 34445677889999999999999998863221122 22334444445555555545566655322233444444
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-21 Score=175.52 Aligned_cols=381 Identities=16% Similarity=0.100 Sum_probs=319.0
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.+.+.+...|+.++|+.+++.+.+.. +...+.|..+..++...|+.+.|.+.|....+.+ +........+.......|
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhc
Confidence 37788889999999999999999864 4567789999999999999999999999999876 434455666777778889
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
++++|...+.+..+... --..+|..|.-.+-.+|+...|++.|++..+. .|+ ...|..|-..|...+.++.|...|
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 99999999988877542 24568999999999999999999999999875 444 467888999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
.+...... .....+..+...|...|..+.|+..|++.++.... -+..|+.+..++-..|+..+|.+.|....... +.
T Consensus 276 ~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 276 LRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 98877532 25678888999999999999999999999886332 46789999999999999999999999998874 44
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMV 363 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 363 (491)
.....+.|..+|...|.+++|..+|....+-.+. -....+.|...|-+.|++++|+..+++..+ +.|+. ..|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 5677889999999999999999999999886333 456789999999999999999999999986 57776 5899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDG 441 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 441 (491)
..|-..|+.+.|.+.+.+++.. .|. ...++.|...|-..|++.+|++-++...+. +|| +..+-.++.++-...+
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 9999999999999999999985 454 567889999999999999999999999964 555 2344444443333333
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.6e-20 Score=195.14 Aligned_cols=428 Identities=12% Similarity=0.035 Sum_probs=325.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHH------------H
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK-ETLF------------I 115 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~ 115 (491)
..+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.|+...+...... ...+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44567899999999999998764 55788899999999999999999999999887652221 1111 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
.....+.+.|++++|+..|+++..... .+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 234567789999999999999988753 367788889999999999999999999998763 224555666666664 46
Q ss_pred ChHHHHHHHHHHHhCCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 196 EWEEASRVFDEMLEREVP--------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+.++|..+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 789999888765432100 11234556777888999999999999999987443 567788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCCHH
Q 041882 268 NEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV---------VTYNILINYLCKEDRAA 338 (491)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~ 338 (491)
++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999998753 334444555555677889999999999876543222221 12334566788899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999872 25566677788889999999999999999999864 3467888999999999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhh-h---hhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 419 KRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMA-I---SSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
+.. ..+...+..+..++...|+.+++.+.+++.....-+ | .+...+..++.++.+.|++.++..+.++.+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 642 224556677777788899999999999887765311 1 133456677999999999999988876654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=7.7e-21 Score=179.63 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=251.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT---VVTYNSLIGFLCR 228 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 228 (491)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999874 23556888899999999999999999999987642221 2567888999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCChHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL----VNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 304 (491)
.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998763 346788999999999999999999999999886533221 234567778889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886543 56788889999999999999999999998753222245678889999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCCcchhHHHHHHhhhhhhhhh
Q 041882 385 SRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI---GDGNAGGLVEIRDMRDYSMAISS 461 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~m~~~~~~~~~ 461 (491)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+..+++..+++|.+.++.|+.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 64 66667788999999999999999999999875 6899999998887775 34788899999999998877653
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.8e-19 Score=176.84 Aligned_cols=400 Identities=11% Similarity=-0.005 Sum_probs=264.0
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
-..+...|+++.|+..|++.+.. .|+...|..+..++.+.|+++.|.+.++...+.+ +.+...+..+..+|...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 34556679999999999998874 5677888889999999999999999999999876 56778888999999999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH-------------HHH---C-----------CCCCC
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD-------------ADK---M-----------GFRPN 180 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------~~~---~-----------~~~p~ 180 (491)
++|+..|..+...+...+.. ...++..+........+...++. ... . ...++
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665433221211 11111111110000111111100 000 0 00000
Q ss_pred H-HhHHHHHHH---HHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041882 181 L-ISFNVMIKG---RLKKGEWEEASRVFDEMLERE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTY 254 (491)
Q Consensus 181 ~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (491)
. ..+..+... ....+++++|.+.|+...+.+ .+.....|+.+...+...|++++|+..+++.++.... +...|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHH
Confidence 0 000000000 012356788888888877654 1224556777777788888888888888888775322 35567
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 255 ALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 777777888888888888888877764 445667777788888888888888888888876544 566777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------hHHHHHHHHHcCCCHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE------TFSCLLVGLLKGGKVD 408 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~ 408 (491)
|++++|+..+++..... +.+...+..+...+...|++++|+..|++.++.....+.. .++.....+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 88888888888877642 4456677777888888888888888888887753111111 1111222233468888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 409 DACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
+|.+++++..+... .+...+..+...+...|+.++|+..+++..+..
T Consensus 526 eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 88888888776532 234567777888888888888888877765543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3.2e-19 Score=176.81 Aligned_cols=360 Identities=13% Similarity=0.065 Sum_probs=290.9
Q ss_pred hhhcCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+.++.+++..--+|....+.. ...+......++..+.+.|+++.|..+++...... +.+...+..++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 556677877777776554321 11223345666778889999999999999999876 556777777788888899999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.|+..|+++....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999998763 377889999999999999999999999998863 2346678888999999999999999999887
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76433 33344333 3478899999999999998876444455555666778899999999999999999875 456777
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEE----AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+..+...+...|++++ |...|+++.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888999999999986 89999999987655 77899999999999999999999999998764 445667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRL-ETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++...|++++|...++++...+ |+. ..+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999864 443 33444577889999999999999998865
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-18 Score=173.10 Aligned_cols=400 Identities=12% Similarity=-0.053 Sum_probs=291.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+......+.+.|+++.|.+.|+..... .|+...|..+..+|.+.|++++|++.+++..+.+. .+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556677888999999999999998876 45778899999999999999999999999988763 36789999999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh-------------------------C--
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE-------------------------R-- 210 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------~-- 210 (491)
..|++++|+..|..+...+-. +......++..+........+...++.-.. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999988766544211 111111111111111001111111110000 0
Q ss_pred CCCCC-hhhHHHHHHH---HHhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 211 EVPPT-VVTYNSLIGF---LCRTGEMGKAKGLFEDMIKKG-TYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 211 ~~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
...+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00000 0001111111 122467999999999998764 223 45667888888899999999999999998763 33
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
....|..+...+...|++++|...|+.+.+.++. +...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 3567788888899999999999999999887554 68899999999999999999999999998764 445677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHh
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL-----K-AWEGLVTDACI 438 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~-~~~~ll~~~~~ 438 (491)
.+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|++..+..-..+. . .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998853 345788899999999999999999999998865321111 1 11222222233
Q ss_pred cCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 439 GDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 439 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+++.++...+++.... .|++...+..+++++..+|++.++..+..+
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 57788888888776654 488888999999999999999998877554
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.7e-17 Score=168.11 Aligned_cols=407 Identities=12% Similarity=0.005 Sum_probs=306.8
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
......+......|+.++|++++....... +.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334557777888999999999999988633 4556679999999999999999999999998876 66788888999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998875 33666 888999999999999999999999987422 4555666777888889999999
Q ss_pred HHHHHHHhCCCCCCh------hhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHH
Q 041882 202 RVFDEMLEREVPPTV------VTYNSLIGFLC-----RTGEM---GKAKGLFEDMIKK-GTYPNAV-TY----ALLMEGL 261 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ll~~~ 261 (491)
+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 99887654 1221 11222233222 12234 7788888888864 2222221 11 1113445
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP---DVVTYNILINYLCKEDRA 337 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 337 (491)
...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887532 322 22335778999999999999999987754321 134566677788999999
Q ss_pred HHHHHHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 338 AEAYKVLTEMQIGG-----------CKPNA---ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 338 ~~a~~~~~~~~~~~-----------~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
++|..+++.+.... -.|+. ..+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 99999999988642 11232 245566778889999999999999998863 4467888999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhh
Q 041882 404 GGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSV 462 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~ 462 (491)
.|++++|++.+++..+. .|+ ...+......+...++++++...++++++.. |+++
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCH
Confidence 99999999999999975 454 5566666667788889999999998888765 6653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2e-17 Score=167.64 Aligned_cols=415 Identities=14% Similarity=0.077 Sum_probs=314.2
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 61 LSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+..++. .. ..+.++.-....+......|+.++|++++....... +.+...+..+...+...|++++|.++|++....
T Consensus 2 ~~~~~~-~~-~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-AL-KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hh-ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 22 235666777888889999999999999999998744 566778999999999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 041882 141 DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYN 220 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 220 (491)
. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 5 3367788899999999999999999999998873 33455 888888999999999999999999997544 666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHc-CCCCC
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA------VTYALLMEGLC-----FKGEY---NEAKKMMFDMAYR-GCKPQ 285 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~ 285 (491)
.+..++...+..++|++.++.... .|+. ......+.... ..+++ +.|+..++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987654 2221 11122222222 22234 6788888888854 22232
Q ss_pred hh-cHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CH
Q 041882 286 LV-NFG----VLMSDLGKRGKIEEAKSLLSEMKKRQYK-PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP---NA 356 (491)
Q Consensus 286 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 356 (491)
.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..-.. ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 21 111 1133456779999999999999887532 332 22225778999999999999999987643111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH-----------CPR---LETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
.....+..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+.+++++... .
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~ 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-A 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 4566677788999999999999999987531 122 234566778899999999999999999875 3
Q ss_pred CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 423 RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 423 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
+.+...+..+...+...|+.+++++.+++..... |++......++..+.+.|++.+++...++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4457788888888889999999999998776654 9999999999999999999999988766543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.1e-16 Score=155.20 Aligned_cols=430 Identities=11% Similarity=0.039 Sum_probs=307.6
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+....+.|+++.|+..|++..+....-.+..+ .++..+...|+.++|+..+++..... +........+...+...|++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 34457789999999999999875422112334 88888889999999999999998322 33445555557789999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999988744 6788888899999999999999999999876 466666644444444456666699999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHH-HH----hcCCH---hHHHHH
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT------YALLMEG-LC----FKGEY---NEAKKM 273 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~-~~----~~~~~---~~a~~~ 273 (491)
.+.... +...+..+..+..+.|-...|.++..+-... +.+...- ....++. .. ...++ +.|..-
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 998533 7888888999999999999988777664321 1111100 0111110 00 11222 334444
Q ss_pred HHHHHHc-CCCCCh-hcH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 274 MFDMAYR-GCKPQL-VNF----GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 274 ~~~~~~~-~~~~~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
++.+... +-.|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4554432 112321 122 2335567788899999999999998876656667888899999999999999999988
Q ss_pred HhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHcCCCHH
Q 041882 348 QIGG-----CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH-----------CPR--L-ETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 348 ~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~~ 408 (491)
.... ..++......|.-++...+++++|..+++.+.+... .|+ - ..+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 6542 122334456788888999999999999999987311 122 1 23445667788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 409 DACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
+|.+.++++... -+-|...+..+-..+...|+...+...++..... .|++......+++++-++|+|..++.....
T Consensus 434 ~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 434 TAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999865 3447788888888878888888888887544444 599989999999999999999988776544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=4.1e-16 Score=158.42 Aligned_cols=184 Identities=10% Similarity=-0.044 Sum_probs=130.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666666666665443 2233344555566667777777777777776543 223333333334444568888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 377 KVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
..+++.++. .|+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|+.++++..+++..+..
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888875 3667788888888899999999999999988753 2245667777777888888888888887766654
Q ss_pred hhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 457 MAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 457 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
|+++..+..+++++...|++.++..+.++.
T Consensus 674 --P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 674 --PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999999888776654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.4e-16 Score=159.01 Aligned_cols=414 Identities=12% Similarity=0.031 Sum_probs=261.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|+..|+...+.. +.+..++..+...+.+.|++++|+..+++..+.. +.|...+..+ ..+ +++.+|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHH
Confidence 499999999999998876 4557888899999999999999999999998875 3444544444 222 888888888
Q ss_pred HHHhhhCCCCcCHHHHHHHHHH--------HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCChHHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDI--------LVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-IKGRLKKGEWEEASRVF 204 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 204 (491)
++++...... +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|.+.|++++|++++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 8888776532 44444444443 3333 33333333 2222222333333333 55666666666666666
Q ss_pred HHHHhCCC------------------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHH
Q 041882 205 DEMLEREV------------------------------PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PNAVT 253 (491)
Q Consensus 205 ~~~~~~~~------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 253 (491)
.++.+.+. .-+...+..+...|.+.|+.++|.++++++...-.. |...+
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 55554422 234555566777777778888888887776432111 11111
Q ss_pred HHH------------------------------HHHH-------------------------------------------
Q 041882 254 YAL------------------------------LMEG------------------------------------------- 260 (491)
Q Consensus 254 ~~~------------------------------ll~~------------------------------------------- 260 (491)
+.. ++..
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 000 0011
Q ss_pred --------------------HHhcCCHhHHHHHHHHHHHc-C-C------------------------------------
Q 041882 261 --------------------LCFKGEYNEAKKMMFDMAYR-G-C------------------------------------ 282 (491)
Q Consensus 261 --------------------~~~~~~~~~a~~~~~~~~~~-~-~------------------------------------ 282 (491)
..+.|+.++|.++++..... + .
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 12334444454444433321 0 0
Q ss_pred --------------------------CC--ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 283 --------------------------KP--QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 283 --------------------------~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
++ +...+..+..++.. ++.++|...+.+..... |+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHC
Confidence 00 11122222222222 45555666555555442 3433333334444578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8889998888887553 4555556666777888899999999999888764 223334444444555679999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 415 EEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
++..+. .|+...|..+..++.+.|+.++++..+.+..+.. |++......+++++...|+++++.....+.
T Consensus 600 ~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 600 TRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999864 5678888899889999999999999998877665 999999999999999999999887765543
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=6.6e-15 Score=128.38 Aligned_cols=404 Identities=14% Similarity=0.157 Sum_probs=290.6
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH--hcCChhHH-HHHHHHHHhc-------------------
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLA--RARDFDAV-ETVLGYIQDF------------------- 105 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~------------------- 105 (491)
+-.+...|...++.-+|+.|.+.|+..+...-..|++.-+ ...+..-+ .+.|-.|...
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 3345667999999999999999998888877666665433 22222211 1111111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH
Q 041882 106 NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN 185 (491)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 185 (491)
-.+-+..++..+|.++++--..++|.+++++-.......+..+||.+|.+-.-... .+++.+|....+.||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 12456788999999999999999999999998877777899999999987654333 78999999999999999999
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHc--C--C----CCCHH
Q 041882 186 VMIKGRLKKGEWEE----ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK-AKGLFEDMIKK--G--T----YPNAV 252 (491)
Q Consensus 186 ~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~----~~~~~ 252 (491)
.++++..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.+++.+ +..++.++... | + +-|..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 56688889999999999999999999999888754 55556665532 1 2 22456
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAYRG----CKPQ---LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (491)
.|...+..|....+.+.|.++..-+.... +.|+ ..-|..+..+.++....+.....|+.|+-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67888888889999988888766554321 2233 2345677788888888999999999998887888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H----H-HHHHH-------HHHHh
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE-DF--------E----G-SLKVL-------NAMLT 384 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~----~-a~~~~-------~~~~~ 384 (491)
.++++....++++-.-++|.++...|..-+...-..++..+++.. .. . + |..++ .++..
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999999888764444444444444444322 11 0 0 11111 22222
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhh
Q 041882 385 SRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM----RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSM 457 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~ 457 (491)
. .......+..+..+.+.|..++|.+++.-+.+.+- .|......-++.+.........++..++-|...+.
T Consensus 518 ~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 Q--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred c--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2 23456677888889999999999999999965542 33444455666766667777777777777755544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.9e-14 Score=143.51 Aligned_cols=405 Identities=15% Similarity=0.067 Sum_probs=281.7
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.++..+...|+.++|+..+++..... +........+...+...|+++.|.++++.+.+.. +.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 45677778899999999999988321 2233334444668888999999999999999987 666888888899999999
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|+++..
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998864 555556555555555666767999999999874 2356677888888899998888887776
Q ss_pred HHHhCCCCCChhhH------HHHHHHH-----HhcCC---hhHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcC
Q 041882 206 EMLEREVPPTVVTY------NSLIGFL-----CRTGE---MGKAKGLFEDMIKK-GTYPNA-----VTYALLMEGLCFKG 265 (491)
Q Consensus 206 ~~~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~~~~~~~-~~~~~~-----~~~~~ll~~~~~~~ 265 (491)
+-... +.+....+ ..+++.- ....+ .+.|+.-++.+... +..|.. .+..-.+-++...+
T Consensus 228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 54321 11111111 1111100 01112 34455555555542 222321 12223455677888
Q ss_pred CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHH
Q 041882 266 EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-----KPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a 340 (491)
++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+..... .++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 8999999999988887665566778888899999999999999988866431 22344456788888888999999
Q ss_pred HHHHHHHHhCCC-----------CCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 341 YKVLTEMQIGGC-----------KPN--AA-TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 341 ~~~~~~~~~~~~-----------~~~--~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
..+++++.+..- .|| -. .+..++..+...|+..+|++.++++.... +-|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999988876310 122 22 33445667788899999999999887753 4578888888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhh
Q 041882 407 VDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISS 461 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~ 461 (491)
+.+|.+.++..... .|+ ..+......++...+++.++-+.+....+.. |++
T Consensus 466 p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~ 517 (822)
T PRK14574 466 PRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS--PED 517 (822)
T ss_pred HHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCc
Confidence 99999999776654 444 4555566666677777777777776665544 544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.8e-15 Score=144.70 Aligned_cols=425 Identities=11% Similarity=0.023 Sum_probs=254.5
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGS--KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
+-+.+.+-..|++..+..+.+.+..... ..-...|-.+.+++-..|+++.|...|....+..-......+.-+.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 3456667777788888777777665431 12234567777777778888888877777666542222344556777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
+.|+++.+...|+++.... +.+..+...|...|+..+ ..+.|..++.+..+.- ..|...|..+...+...+-+.
T Consensus 354 ~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH
Confidence 7888888887777776654 225566666666666554 3455666665555442 335556665555554443333
Q ss_pred HHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcC
Q 041882 199 EASRVFDEM----LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK---GTYPNA------VTYALLMEGLCFKG 265 (491)
Q Consensus 199 ~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~ 265 (491)
. +.+|..+ ...+..+.....|.+.......|++++|...|+..... ...++. .+--.+...+-..+
T Consensus 432 s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 432 S-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred H-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 2 5554433 23444456666777777777777777777777666543 111222 22223344444455
Q ss_pred CHhHHHHHHHHHHHcC---------------------------------CCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAYRG---------------------------------CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
++..|.++|..+.+.. ...++..++.+...+.+...+..|..-|..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 5555555555554431 0223333344444555555555555544444
Q ss_pred HHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 313 KKR-QYKPDVVTYNILINYLCK------------EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 313 ~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
.+. ...+|+.+.-.|...|.+ .+..++|+++|.+.++.. +-|...-+.+...++..|++..|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 332 112355555555554432 234667777777777653 556666667777777888888888888
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhh
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR-KMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMA 458 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~ 458 (491)
.+..+... ....+|..+.++|..+|++..|++.|+...+. .-.-+......|-.+++..|++.++.+.+...+...
T Consensus 670 sqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-- 746 (1018)
T KOG2002|consen 670 SQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-- 746 (1018)
T ss_pred HHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--
Confidence 88877632 34566777888888888888888888876643 334466777778888888888766666665544433
Q ss_pred hhhhHHHHHHHHHhcCCC
Q 041882 459 ISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g 476 (491)
|+++.-.++++.+..+.+
T Consensus 747 p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred CccchHHhHHHHHHHHHH
Confidence 777777777777766554
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.6e-15 Score=140.93 Aligned_cols=430 Identities=12% Similarity=0.063 Sum_probs=307.8
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIR--CKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 129 (491)
........++..+...-..+ ..++...+.|...+.-.|+++.+..+...+...... .-...|..+.++|-..|++++
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 33456778888888777544 567788999999999999999999999998876521 223558889999999999999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----ChHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG----EWEEASRVFD 205 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~ 205 (491)
|..+|.+.......-.+..+--+.+.+...|+.+.+...|+.+.+.. +-+..+..+|...|...+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 99999988776533224566778999999999999999999998863 234556666666666664 4577777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI----KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR- 280 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 280 (491)
...+.- +.|...|-.+...+-... +..++.+|.... ..+..+.+...|.+...+...|++..|...|+.....
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 777754 448888988888776554 444477776654 4455678899999999999999999999999987765
Q ss_pred --CCCCCh------hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------------C
Q 041882 281 --GCKPQL------VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK---------------------------------P 319 (491)
Q Consensus 281 --~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~ 319 (491)
...++. .+--.+....-..++.+.|.+.|..+.+..+. .
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 122222 12223444445556677777777776654221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCC
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLR------------VEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~ 386 (491)
++..+..+...+.+...+..|.+-|...... ...+|..+...|.+.|.. .+..++|+++|.+.++..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 2223333333333333333333333333221 112444444455554442 344678888888888864
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHH
Q 041882 387 HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVV 466 (491)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 466 (491)
+.|...-+-+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|..+|.+..|++.++...+.-.+-+++..+.
T Consensus 643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred -cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 34777778888889999999999999999998743 3557788899999999999999999988887777778899999
Q ss_pred HHHHHhcCCCcchhhhhHhhh
Q 041882 467 DLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 467 ~l~~~~~~~g~~~~~~~~~k~ 487 (491)
-|+.+|++.|+++++.....+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999988776544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.4e-14 Score=124.97 Aligned_cols=344 Identities=14% Similarity=0.153 Sum_probs=261.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+.+..++..+|..+++-...+.|.+++++........+..+||.+|.+-.-..+ .+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 446679999999999999999999999999888888999999999887554333 6788899888899999999999
Q ss_pred HHHHHhCCChh----hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHhC----CC----CCChhhH
Q 041882 153 LDILVDNDRVD----DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE-ASRVFDEMLER----EV----PPTVVTY 219 (491)
Q Consensus 153 l~~~~~~~~~~----~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~ 219 (491)
+++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +-|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999876 456778889999999999999999999999888754 44555554432 12 2245567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKG----TYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+....+|+.|+-+-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788889999999999988877665321 2222 234666777888999999999999999998888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---H-----H-----HHHHH-------HHHHHhCC
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-R---A-----A-----EAYKV-------LTEMQIGG 351 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---~-----~-----~a~~~-------~~~~~~~~ 351 (491)
+++..-.+.++-..++|..+...|...+...-..++..+++.. + . . -|..+ -.+|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999988775545555444555454433 1 1 0 01111 122332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 352 CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC----PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 352 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
........+...-.+.+.|..++|.+++..+.+.+-. |......-+++.-.+.+....|..+++-|...+.
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3455666777788889999999999999999766322 3333444666777788999999999999976643
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=5.1e-15 Score=130.06 Aligned_cols=416 Identities=11% Similarity=0.060 Sum_probs=274.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSY-ASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 128 (491)
.....+|+..|+-+.+...-|+.-.+ ..+...+.+.+++..|.+.|+.....-...+ ..+.+.+...+.+.|.++
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 45556777777766665555554433 2334566777888889888887765432222 345666666788899999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhH--------HHHHHHHHhcC-----
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF--------NVMIKGRLKKG----- 195 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~ll~~~~~~~----- 195 (491)
.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+.....||..-| ..|+.-..+..
T Consensus 294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 999999988775 377766666666777788888888899888765333332211 11221111111
Q ss_pred ---ChHHHHHHHHH---HHhCCCCCChh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041882 196 ---EWEEASRVFDE---MLEREVPPTVV---------------------TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 196 ---~~~~a~~~~~~---~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (491)
+-..|++.+-. +..--+.|+-. .-..-..-+.+.|+++.|+++++-+.+..-.
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk 451 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK 451 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch
Confidence 11112221111 11111111100 0011223566777777777777766544221
Q ss_pred CCHHH-------------------------------HHH-----HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 249 PNAVT-------------------------------YAL-----LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 249 ~~~~~-------------------------------~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
.-... |+. --.....+|++++|.+.|++.+.....-....|++
T Consensus 452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni- 530 (840)
T KOG2003|consen 452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI- 530 (840)
T ss_pred hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-
Confidence 11100 111 01112345788999999998886643333333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (491)
.-.+...|++++|+..|-++... ...+..+...+...|-...+..+|++++.+.... ++.|+..++.+...|-+.|+-
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccch
Confidence 33466789999999998877553 2237778888889999999999999999887653 567788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCCcchhHHHHH
Q 041882 373 EGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI-GDGNAGGLVEIRD 451 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~ 451 (491)
.+|.+.+-.-... ++.+..+..-|...|....-+++++.+|++..- ++|+..-|..++..|.+ .|++..+++.++.
T Consensus 609 sqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 609 SQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999887665553 566888888888889999999999999998873 79999999999876554 5678889998887
Q ss_pred HhhhhhhhhhhHHHHHHHHHhcCCCcch
Q 041882 452 MRDYSMAISSVMNVVDLLWTYLGMGTCV 479 (491)
Q Consensus 452 m~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (491)
..+.- |.+..++--|..+...+|.-+
T Consensus 686 ~hrkf--pedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 686 IHRKF--PEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhC--ccchHHHHHHHHHhccccchh
Confidence 66553 899999999999888888443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1.5e-12 Score=124.23 Aligned_cols=367 Identities=14% Similarity=0.097 Sum_probs=282.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
.++.+...|+.++|.+++.+.+... +.....|..|...|-+.|+.+.+...+-.+--.+ +.|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 4455556799999999999999865 6677799999999999999999998776665555 6778999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHh----HHHHHHHHHhcCChHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLIS----FNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~ 202 (491)
+++|.-.|.+..+..+ ++...+---...|-+.|+...|..-|.++.....+.|..- .-.+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998763 3666666678889999999999999999988743222222 2334566777788899999
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------------------------CHHHH
Q 041882 203 VFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP---------------------------NAVTY 254 (491)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~ 254 (491)
.++..... +-..+...++.++..|.+...++.|......+......+ +..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99887763 233466788999999999999999999888877622222 22221
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 255 ALLMEGLCFKGEYNEAKKMMFDMAYRG--CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
-+.-++...+..+....+...+.... ..-+...|.-+..++...|++.+|..+|..+......-+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 22334455555555555666666665 334566788899999999999999999999998765557889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHhHHHHHHHHHcC
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT--------SRHCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~ 404 (491)
..|.++.|.+.|...+... +.+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998753 44455666777788899999999999998653 23445666666677788889
Q ss_pred CCHHHHHHHHHHHH
Q 041882 405 GKVDDACFVLEEME 418 (491)
Q Consensus 405 g~~~~a~~~~~~~~ 418 (491)
|+.++-..+...|.
T Consensus 540 gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 540 GKREEFINTASTLV 553 (895)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888666655554
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-12 Score=114.66 Aligned_cols=362 Identities=10% Similarity=0.010 Sum_probs=263.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH--
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN-- 185 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-- 185 (491)
..|...+-.....+.+.|....|+..|......- +..=.+|..|.... .+.+. ...+.. +...|.....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHHH
Confidence 3455555555556667777888888877776532 12333343333332 22222 222221 1121211111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHh
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT--YPNAVTYALLMEGLCF 263 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~ 263 (491)
.+..++-...+.+++..-.......|++.+...-+....+.....+++.|+.+|+++.+... .-|..+|+.++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 23345556668888888888888888886766666667777888999999999999998732 1267788887743322
Q ss_pred cCCHh-HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 264 KGEYN-EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 264 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
..... .|..++. + -+--+.|..++...|+-.++.++|...|++..+.++. ....|+.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 1222211 1 1344567888899999999999999999999998776 77889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 343 VLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
-++...+-+ +.|...|-.+.++|.-.+.+.-|+-+|+++.+.. +.|...|.+|..+|.+.++.++|++.|++....|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999865 6788899999999999999999999999999863 34889999999999999999999999999997653
Q ss_pred CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-----hhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 423 RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-----MAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 423 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+...+..|...+-+.++..++...+++-.+.- ++|.......-|+..+.+.++++++..|.-+
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 366788889998888899999998887766533 4466777777799999999999999988544
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=6.1e-13 Score=126.84 Aligned_cols=366 Identities=15% Similarity=0.127 Sum_probs=279.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.....+. .|...|..+.....+.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3445599999999999999987 77889999999999999999999998887776653 377999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV----TYNSLIGFLCRTGEMGKAKGLFE 240 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~ 240 (491)
|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|.. .--.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 3355555556778999999999999999999875432322 22344666777888899999988
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------------------ChhcHHHH
Q 041882 241 DMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP---------------------------QLVNFGVL 292 (491)
Q Consensus 241 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l 292 (491)
..... +-..+...++.++..|.+...++.+.............+ +...+ -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87763 223355678888999999999999988887776622222 22221 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQ--YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
+-++.+....+....+.....+.+ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344455555555555556655 334567899999999999999999999999988755566778999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCC
Q 041882 371 DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME--------KRKMRFDLKAWEGLVTDACIGDGN 442 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~ 442 (491)
.+++|.+.|+..+... +.+...-..|...+-..|+.++|.+.++.+. ..+..|+....-.....+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999863 2356666778888999999999999999954 233556666666666667777777
Q ss_pred cchhHHHHHHhhh
Q 041882 443 AGGLVEIRDMRDY 455 (491)
Q Consensus 443 ~~~~~~~~~m~~~ 455 (491)
++-+.....|...
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665554
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.3e-11 Score=112.15 Aligned_cols=433 Identities=9% Similarity=0.008 Sum_probs=270.4
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH----HHhcCCCCCHHHHHHHHHHH
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGY----IQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 121 (491)
.+..+|.+..-++.|..+++.+.+. ++.++..|......=-.+|+.+...+++++ +...|+..+...|..=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455555666666666666666653 556666666655555566666666666553 23455556666666666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
-..|..-.+..+.......|+.- -..+|+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 66666666666666665555432 2345666666666666666666666666553 22344555555555555567777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
...+|+++... ++.....|-.....+-..|+...|..++....+.... +...|-.-++.-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777665 3335666666677777778888888888887776433 667777777777788888888888877665
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
. .|+...|.--+...--.+..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 5666666665555566777888888887777652 223456777777777788888887777665442 23334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--------------
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR----K-------------- 421 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-------------- 421 (491)
..+...=-+.|.+-.|..++++..-.+ +.+...|...|+.-.+.|+.+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 555555566777788888888777664 346677777888888888888777766665543 1
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 422 -----------MRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 422 -----------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
.+-|++..-++...+....+.+.+.+-|.+... +.|+....+.-+...+...|.-++..+..++..
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 111333333333333333334444444443332 337777777777777777786666666666544
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=4.1e-13 Score=125.79 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=200.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHH-HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCChHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQS-FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN--VMIKGRLKKGEWEEA 200 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 200 (491)
.|+++.|++.+....... +++.. |.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588998888887765542 22333 333344447788899999999888765 45543332 335678888999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
...++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988887543 6778888888899999999999999998887655322 1223333333344455566666
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
++.+.+. .+.+......+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6655433 2456677778888888889999999888888774 3344322 2333345588888888888887653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 354 PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566777888888889999999999888884 48888888888888889999999888887653
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=6.6e-16 Score=138.29 Aligned_cols=260 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
.+...+.+.|+++.|.++++...... .+.+...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555556666666666664433222 2334444555555555566666666666666554422 44455555555 466
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE-VPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666554433 2344455556666666666666666666655432 234555566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK 318 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 318 (491)
+++..+.... |......++..+...|+.+++..++....+.. +.|...+..+..++...|+.++|...|++..+.++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 6666665222 45555666666666666666666666655543 344445555666666666666666666666654333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 319 PDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 319 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
|+.....+..++...|+.++|.++.++.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccc
Confidence 5666666666666666666666665554
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1e-12 Score=123.10 Aligned_cols=285 Identities=14% Similarity=0.126 Sum_probs=219.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH--HHHHHHHhCCChhh
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLF-ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN--SLLDILVDNDRVDD 164 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 164 (491)
-.||++.|.+.+....+.. +++..+ ........+.|+++.|.+.+.++.+.. |+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766643 223333 333455588999999999999998753 4443332 34678888999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChhHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 237 (491)
|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998875 335677888999999999999999999999987654222 123333444444555666667
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 041882 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY 317 (491)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 317 (491)
+++.+.+. .+.++.....+...+...|+.++|...+.+..+. +++... .++.+....++.+++....+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77766543 3447788888999999999999999999998874 555522 233344456999999999999998766
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 318 KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 318 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++....
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 7888999999999999999999999999874 799999999999999999999999999988653
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=7e-13 Score=124.97 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=196.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI--SFNVMIKGRLKKGEWE 198 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~ 198 (491)
...|+++.|.+.+.+..+.. |+ ...+-....++...|+++.|.+++.+..+.. |+.. .-......+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45788888888888876653 33 3344455667777888888888888876643 4432 3333577778888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCHhHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYA-LLMEGL---CFKGEYNEAKKMM 274 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~ 274 (491)
.|...++.+.+.... +...+..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888887533 6677888888888888888888888888887654 332221 111111 2223333333344
Q ss_pred HHHHHcC---CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 275 FDMAYRG---CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTY-NILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 275 ~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
..+.+.. .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4444432 1236777788888888899999999999888886443221111 11112223457778888888877764
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 351 GCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 351 ~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3344 456678888889999999999999533333458888888899999999999999999988653
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=1.2e-12 Score=123.30 Aligned_cols=290 Identities=12% Similarity=0.042 Sum_probs=196.2
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNL-ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468899999998887665 3443 3344456677788999999999988876532222223344577788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH---HhcCChHHHHHHHHHHH
Q 041882 237 GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL---GKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 313 (491)
..++.+.+.... +..++..+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+.+...+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998887543 66778888888999999999999999988886433322211111221 22222233333444444
Q ss_pred HcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH--HHHhcCCHHHHHHHHHHHHhCCC
Q 041882 314 KRQY---KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY-RMMVD--GFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 314 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~--~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
+..+ +.+...+..++..+...|+.++|.+.+++..+.. |+.... ..++. .....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 3322 1377888888888899999999999999888753 333311 01222 2234577888888888887752
Q ss_pred CCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 388 CPRL--ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 388 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.+++.+.+++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234 56678888889999999999999964444457888888888888888888888877776543
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.1e-12 Score=110.80 Aligned_cols=291 Identities=17% Similarity=0.167 Sum_probs=202.1
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK---ETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 128 (491)
.-.+++++|++.|-.|.+.. +.+.++--.|...+.+.|..+.|++++..+.+..--+. ......|..-|...|-++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44578889999998888743 44555667777888888999999999988876431111 234556777788889999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
.|+++|..+.+.+ .--..+...|+..|-...+|++|++.-+++.+.+..+.. ..|.-+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999998887754 224567888888888888999999888888876544332 23455555666677888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
.+..+.+.+ ++..-..+.+.....|+++.|++.++...+.+..--..+...+..+|.+.|+.++....+..+.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 888776543 5555566777888888888888888888887655556677778888888888888888888887763 3
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK---EDRAAEAYKVLTEMQI 349 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~ 349 (491)
....-..+........-.+.|..++.+-... +|+...+..++..-.. .|...+.+.++++|..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333444444444444555665555444433 4777777777775542 3445556666666654
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=8.4e-16 Score=137.62 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=115.3
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
..+...+...|++++|++++....... .+.+...|..+.......++++.|.+.++.+...+ +.++..+..++.. ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cc
Confidence 456777889999999999997655443 24455556666677778999999999999999876 4467778888887 78
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
.+++++|.+++++..+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876543 567778889999999999999999999987542 34577888889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (491)
.+++..+.... |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|..+++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999987433 68889999999999999999999999887763 3456678889999999999999999999998874
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
+.|......+..++...|+.++|..+..++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 56888888999999999999999999887654
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.2e-12 Score=115.42 Aligned_cols=382 Identities=11% Similarity=0.077 Sum_probs=254.8
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYP----SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
...+..++..|+++|+-.+..-...+.. ..+.+...+.+.|.++.|...|+.+.+. .|+-.+-..|+-++...|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 3455678889999988776543333322 3455556677889999999999988876 356555445555555678
Q ss_pred CHHHHHHHHHHhhhCCCCc------------CHHHHHHHH-----HHHHhCC--ChhhHHHHHHHHHHCCCCCCHHh---
Q 041882 126 LVDKAIEVFNRMTSFDCVR------------TLQSFNSLL-----DILVDND--RVDDAKRMFDDADKMGFRPNLIS--- 183 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~------------~~~~~~~ll-----~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~--- 183 (491)
+-++..+.|.+|...-..+ +....+..| .-.-+.+ +.++++-.-.+++.--+.||-..
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 8888888888886642222 222222211 1111111 11122211122222222232110
Q ss_pred H------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH----------------------
Q 041882 184 F------------------NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI---------------------- 223 (491)
Q Consensus 184 ~------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---------------------- 223 (491)
| ..-...+.+.|+++.|.++++-+...+-+.-...-+.|-
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 0 011235778888888888887776553221111111111
Q ss_pred --------------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcH
Q 041882 224 --------------GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNF 289 (491)
Q Consensus 224 --------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (491)
..-...|++++|.+.|++.+.....-....|+ +--.+-..|+.++|++.|-.+... +..+..+.
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl 561 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVL 561 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHH
Confidence 11124588999999999998763332222333 334567889999999999877543 23456677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041882 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV 369 (491)
Q Consensus 290 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (491)
..+...|....+...|++++.+.... ++.|+.+.+-|...|-+.|+-.+|.+.+-+--+- .+-|..+...+...|...
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 77888899999999999999888765 4558999999999999999999999887654432 467788888888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL-LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGD 440 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 440 (491)
.-+++++.+|++..- +.|+..-|..++-.| .+.|++.+|..+++....+ +.-|......|+..+...|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 999999999999876 679999999888655 5689999999999999875 6667788888887654444
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-10 Score=103.76 Aligned_cols=377 Identities=11% Similarity=0.122 Sum_probs=236.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+.+.+-=..+++...|..+|++++.-. ..+...|-.-+..=.+.+....|..+++.....- |.-...|--.+.+=-..
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHh
Confidence 334444445678888999999888754 4445556666666666677777777777766542 22223344444444455
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
|++..|.++|++..+. .|+..+|++.|..=.+.+.++.|..+|+...-. .|+..+|....+.=.+.|++..+.++|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6677777777666654 466667777776666666666666666665543 356666555544444444444444444
Q ss_pred HHHHhC--------------------------------------------------------------------------
Q 041882 205 DEMLER-------------------------------------------------------------------------- 210 (491)
Q Consensus 205 ~~~~~~-------------------------------------------------------------------------- 210 (491)
+...+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 433321
Q ss_pred ------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHhHHHHHH
Q 041882 211 ------EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGL---CFKGEYNEAKKMM 274 (491)
Q Consensus 211 ------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~~ 274 (491)
.-+.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|..+--++ ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01223444555555555566666667777766654 33311 1121111111 2456666777777
Q ss_pred HHHHHcCCCCChhcHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 275 FDMAYRGCKPQLVNFGVLMSDL----GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
+..++. ++....||.-+--.| .++.++..|.+++..... ..|-..+|...|..-.+.++++.+..++++.++-
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 776663 345555655443333 356777888888777653 4567778888888888888999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041882 351 GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAW 429 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (491)
+ +-|..+|......-...|+.+.|..+|+-++... .......|...|+.-...|.+++|..+++++.+.. +...+|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvW 543 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVW 543 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHH
Confidence 5 5566777777777777899999999999888762 22345667777887788999999999999998763 344466
Q ss_pred HHHHH
Q 041882 430 EGLVT 434 (491)
Q Consensus 430 ~~ll~ 434 (491)
.....
T Consensus 544 isFA~ 548 (677)
T KOG1915|consen 544 ISFAK 548 (677)
T ss_pred HhHHH
Confidence 55544
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.8e-12 Score=107.48 Aligned_cols=287 Identities=17% Similarity=0.198 Sum_probs=197.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCh
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL------ISFNVMIKGRLKKGEW 197 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~ 197 (491)
.++.++|.+.|-+|.+.+.. +.++.-+|.+.|-+.|..+.|+++...+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888775422 5566677888888888888888888887764 332 2233455667788888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|.|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888775432 4556677888888888888888888888776554432 3455566666667788888888
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
+.+..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+.++.+..
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 88877664 333344445667777888888888888888887666566677788888888888888888888877653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 041882 354 PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK---GGKVDDACFVLEEMEKR 420 (491)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 420 (491)
++...-..+.+......-.+.|..++.+-+.. .|+...+..++..-.. .|...+-...++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444444444555666555555443 4788888888876553 35566667777777644
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=4.7e-10 Score=103.72 Aligned_cols=425 Identities=13% Similarity=0.101 Sum_probs=329.6
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
..+-+......+++.|.-++.+..+. ++.+.+ |..++++...|+.|..+++...+. ++.+..+|......=-..
T Consensus 380 v~LWKaAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 380 VRLWKAAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEAN 453 (913)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhc
Confidence 34555556667777788888887774 233333 344566777889999999988875 477888888777777788
Q ss_pred CCHHHHHHHHHHh----hhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChH
Q 041882 125 HLVDKAIEVFNRM----TSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 125 ~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~ 198 (491)
|+.+...+++++- ...|+..+...|-.=...|-..|..-.+..+....+..|+.-. ..||+.-...|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 8888888877653 4567888888898888888888998888888888887776432 457888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
-|..+|....+- .+-+...|......--..|..+....++++.... ++-....|....+-+-..|+...|..++....
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999998875 3336677877777777788899999999999886 33356677777788888999999999999998
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-A 357 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 357 (491)
+.. +.+...+-+-+........++.|..+|.+.... .|+...|.--+......++.++|.+++++.++. -|+. .
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 875 456778888888889999999999999998874 456677776666666789999999999998874 4555 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 437 (491)
.|..+.+.+-+.++.+.|...|..-.+. ++-.+..|..+.+.--+.|..-+|..++++..-++ .-+...|-..|..=.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 6677777888899999999988877664 34456788888888889999999999999998664 337788999999888
Q ss_pred hcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC-cchhhhhHhh
Q 041882 438 IGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG-TCVVIDLFQK 486 (491)
Q Consensus 438 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~k 486 (491)
+.|+.+.+-..+-+..+.- |++..-+..-.|...+-+ +...++.++|
T Consensus 765 R~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred HcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHh
Confidence 8888666555544433333 888888888888877666 5555666665
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=4.7e-11 Score=104.14 Aligned_cols=292 Identities=13% Similarity=0.074 Sum_probs=208.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
-.|+|.+|++...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+.-+..-.++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 358888888888887665532 3445555666666778888888888887765334455555666677778888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
-++.+.+.+.. ++........+|.+.|++.....++..+.+.|.--+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888776544 6677788888888888888888888888887765443 356667766666666666556666
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (491)
..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+ .. ..-.+.+.++...-.+..+.-... .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 55443 255566667777888888999999998888888776655 11 222345667777777666665443 2444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (491)
+..+..+...|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.+..++..-.-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 567788888888999999999999988774 4888889999999999999999988888876443333
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=4.5e-11 Score=104.26 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=125.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
|+|..|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+..+.--.++....-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55555555555444443221 23333344444445555555555555444322233334444444445555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh-------hcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 240 EDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL-------VNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+++.+.+.. ++........+|.+.|++..+..++..+.+.+.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555444332 3444445555555555555555555555554433321 23444444444444444444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 313 KKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE 392 (491)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (491)
... .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. ..-.+.+-++.+.-++..++-... .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 332 22234444444444555555555555555554444333311 111233444444444444443332 112234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIR 450 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 450 (491)
.+.+|...|.+.+.|.+|...|+...+ ..|+..+|+-+-.++-+.|+..++.+..+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 444555555555555555555554443 24455555555555555555444444433
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.3e-10 Score=101.60 Aligned_cols=329 Identities=8% Similarity=-0.017 Sum_probs=220.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHH-HH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQS-FN 150 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-~~ 150 (491)
..|...+-.....+.+.|..+.|.+.+......- |..-..|..|..... +.+.+..+ .... +.+ ... --
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e~~~~l----~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIEILSIL----VVGL-PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHHHHHHH----HhcC-cccchHHHHH
Confidence 3444444444555667777888888777766543 444444444444332 22222221 1111 111 111 12
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHh
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP--PTVVTYNSLIGFLCR 228 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 228 (491)
.+..++-...+.+++.+-.+.+...|+.-+...-+....+.....+++.|+.+|+++.+...- -|..+|+.++..-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234455555677888888888888777655555555555666778899999999998886421 256677776644322
Q ss_pred cCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHH
Q 041882 229 TGEMG-KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKS 307 (491)
Q Consensus 229 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 307 (491)
..... -|..+++ -... -+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 1111111 1112 34567777888888888888888888888775 4455677778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 308 LLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
-++.+++-++. |-..|-.+.++|.-.+.+.-|+-.|++..+.. +-|...|..|.++|.+.++.++|++.|......|-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 88888887665 88888888888888888888888888887753 55677888888888888899999998888888752
Q ss_pred CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 388 CPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+...+..+.+.|-+.++..+|.+.|++..+
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888888888888888888887764
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.3e-12 Score=120.79 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
.+.+|-++..+|.-.++.+.|++.|++.++.... ...+|+.+-.-+.....+|.|...|+..+... +-+-..|-.+.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 3444555555555555555555555554443211 33444444444444444555555554443221 111112222334
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|++++++..... +.|+..--..+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 444555555555555555444433 34444444444444555555555555444332 2222222222333344445555
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|...++++.+. ++.+..++..+...|.+.|+.+.|+.-|--+.+
T Consensus 576 al~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 55555555442 112233444444445555555555444444443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.6e-12 Score=120.23 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=219.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRM 168 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (491)
+..+|..+|..+..+- ..+.++...+..+|...+++++|..+|+.+..... ..+.+.|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678888888855543 45568888999999999999999999999876531 12667777776654322 22222
Q ss_pred H-HHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 169 F-DDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 169 ~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
+ +++.+.. +-.+.+|..+..+|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 2333332 346789999999999999999999999999886433 7889999999999999999999999988765
Q ss_pred CCCHHHHHH---HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 041882 248 YPNAVTYAL---LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTY 324 (491)
Q Consensus 248 ~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 324 (491)
|+..|++ +.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+.+++++...+.+ |+..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 5555554 5567889999999999999988775 556677777888888999999999999999888776 65555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 325 NILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 325 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
-..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|..+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55677778889999999999999874 23444577778889999999999999999998864
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.7e-10 Score=101.84 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=60.3
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHS-YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
.+-++|.+++|+++|.+.++. .|+ +.-|....-+|...|+|+.+.+--....+.+ +.-...+..-..++-..|+++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHH
Confidence 355678999999999999874 566 6678888888999999999988888887765 333455555666666777777
Q ss_pred HHHH
Q 041882 129 KAIE 132 (491)
Q Consensus 129 ~a~~ 132 (491)
+|+.
T Consensus 201 eal~ 204 (606)
T KOG0547|consen 201 EALF 204 (606)
T ss_pred HHHH
Confidence 7653
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1.1e-11 Score=117.92 Aligned_cols=349 Identities=12% Similarity=0.118 Sum_probs=220.2
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 62 SLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
.++-.+...|+.|+..+|..++.-|+..|+.+.|- +|..|.-...+.+...|+.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999999 9999999888889999999999999999888775
Q ss_pred CCcCHHHHHHHHHHHHhCCChhh---HHHHHHHHHH----CCCCCCHHhHH--------------HHHHHHHhcCChHHH
Q 041882 142 CVRTLQSFNSLLDILVDNDRVDD---AKRMFDDADK----MGFRPNLISFN--------------VMIKGRLKKGEWEEA 200 (491)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~~~~p~~~~~~--------------~ll~~~~~~~~~~~a 200 (491)
.|...+|..|..+|...||... +.+.+..+.. .|+..-..-+- .++....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999654 3332222221 12211111111 122223334455555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++++..+...... . .+..+++-+.... .-..++........-.|++.+|.+++++-..+|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555444332111 0 1111233333222 222333333222211578999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 281 GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
|.+.+.+-|..|+-+ .++...++.++.-|.+.|+.|+..|+...+..+..+|....+ +.| .++...++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhh
Confidence 998888887777755 788888889999999999999999998888877775542211 122 23333333
Q ss_pred HHHHHHHhcC-----CHH-----HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCC-CHH
Q 041882 361 MMVDGFLRVE-----DFE-----GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK--MRF-DLK 427 (491)
Q Consensus 361 ~li~~~~~~~-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~ 427 (491)
+-+.+-+-.| +.+ -....+++..-.|+.....+|.. ..-...+|+-++..++-..|..-. +.+ +..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 3333222223 111 11222222223344444444443 333344788888888888776322 222 334
Q ss_pred HHHHHHHHHHhcC
Q 041882 428 AWEGLVTDACIGD 440 (491)
Q Consensus 428 ~~~~ll~~~~~~~ 440 (491)
.+..++..|.+..
T Consensus 381 a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 381 AFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666555443
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.5e-09 Score=94.45 Aligned_cols=396 Identities=12% Similarity=0.085 Sum_probs=284.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH-HHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL-QSFNS 151 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 151 (491)
+.+...|..-..-=..++++..|..+|+..+... ..+...|...+.+=.+...+..|..+|++....= |-+ ..|-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHH
Confidence 3444455555555556789999999999999877 4567788888888899999999999999987752 333 45666
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
.+..=-..|++..|.++|+.-.+. .|+...|++.++.=.+.+.++.|..+++..+-. .|++.+|--..+.=-+.|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 676667789999999999998875 799999999999999999999999999998864 5899999999998889999
Q ss_pred hhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCChHHHHH
Q 041882 232 MGKAKGLFEDMIKK-GT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ--LVNFGVLMSDLGKRGKIEEAKS 307 (491)
Q Consensus 232 ~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~ 307 (491)
...|..+|+...+. |- ..+...+.++..-=.+...++.|.-+|+-.+..- +.+ ...|..+...--+.|+....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999998764 11 1123334444444455667888888888877652 222 3445555554445566544433
Q ss_pred H--------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH---HH-HH-HH---Hhc
Q 041882 308 L--------LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA--TYR---MM-VD-GF---LRV 369 (491)
Q Consensus 308 ~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~---~l-i~-~~---~~~ 369 (491)
. |+.++..++. |-.+|--.++.-...|+.+...++|++.... ++|-.. .|. .| |+ +| ...
T Consensus 302 ~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3445555444 7777877887777788888888888888753 455321 111 11 11 11 246
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHh----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcch
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLET----FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGG 445 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 445 (491)
.+++.+.++|+..++. ++....| |........++-+...|.+++...+ |.-|...+|...|..=.+.+.++..
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 7888888888888873 3333333 4444455567888888888888887 6678888888888876777777777
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhh
Q 041882 446 LVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 446 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 483 (491)
-+.+++.++.+ |.+-..+...+..-..+|+++.+..
T Consensus 457 RkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 457 RKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 77777776665 8888888888888888887765543
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.5e-10 Score=99.41 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCK-ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
.....-|.+.|.+++|++.|.+.++.. |+ +..|.....+|...|+|++..+.-.+..+.++. -+.++..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 344567889999999999999999874 56 788999999999999999999988888776422 23455555566666
Q ss_pred CCChhhHH
Q 041882 159 NDRVDDAK 166 (491)
Q Consensus 159 ~~~~~~a~ 166 (491)
.|++++|+
T Consensus 196 lg~~~eal 203 (606)
T KOG0547|consen 196 LGKFDEAL 203 (606)
T ss_pred hccHHHHH
Confidence 66666654
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=5.5e-09 Score=89.86 Aligned_cols=411 Identities=11% Similarity=0.038 Sum_probs=237.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+|-+..+....++..|+.+++.....+-.....+---+...+.+.|++++|...+..+.... .++...+..|..++.-.
T Consensus 26 ~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 26 MPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred CchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 34488899999999999999887644422222333445567778999999999999988865 67778888888888888
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
|.+.+|..+-.+..+ ++-.-..|+....+.++-++...+-..+... ..---+|.......-.+++|++++
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999988766543 3333344455555667766666666555432 111223333333444678899999
Q ss_pred HHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 041882 205 DEMLEREVPPTVVTYNSL-IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-- 281 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 281 (491)
......+ |.-...|.- .-+|.+..-++-+.++++-..+. ++-++...+..+....+.=+-..|..-.+.+..++
T Consensus 175 krvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 8887652 344444443 34566777788888888877765 33234444443332222211112222222222111
Q ss_pred ------------------------CCC-----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 041882 282 ------------------------CKP-----QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL- 331 (491)
Q Consensus 282 ------------------------~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~- 331 (491)
+-| -+..--.|+-.|.+++++.+|..+.+++.-. .|-....-.++.+-
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHh
Confidence 001 0112223455677888888888887665421 22222222222211
Q ss_pred ----HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 332 ----CKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 332 ----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
.......-|.+.|+-.-+++..-|. .--.++..++.-..++++.+.+++.+..--...|... -.+..+++..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcC
Confidence 1112344566666555444333222 2234556666667788888888888776532233333 457899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC
Q 041882 407 VDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG-DGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
+.+|.++|-++....++ |..+|-.++.-++.. ++..-++..+ ...+-.-+...-+...+...++.+
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHH
Confidence 99999999888866555 556666666544444 4444444333 333322233333444445444444
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.4e-10 Score=113.74 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=175.4
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhh
Q 041882 73 KHSYPSYASLIYKLAR-----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG---------KAHLVDKAIEVFNRMT 138 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 138 (491)
..+...|...+++... .+++++|.+.++...+.. |.+...+..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555544321 246788888888888775 445566666655443 2245788888888888
Q ss_pred hCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 041882 139 SFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 139 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
+.+.. +..++..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 87633 77788888888888889999999998888764 224566777788888889999999999888876433 2333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLG 297 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 297 (491)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+... .|+ ....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556678888889988888876532224555667777788889999999888887655 333 333444555566
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 298 KRGKIEEAKSLLSEMKKRQ-YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 46777666665431 11222222 33334445666666555 776654
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.8e-09 Score=97.19 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=227.2
Q ss_pred CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 143 VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
..++.....-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.- +-...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3466666777778888899999999999988763 4556666667778899999888888778888763 4478899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
.--|...|...+|.+.|.+....... -...|-.+...|+..+..++|+..+...-+.= +-...-+-.+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999998765333 24578888899999999999999988776541 11122233344557889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG------GCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.|.++|.......+. |+...+-+.......+.+.+|..+|+..+.. .......+++.+..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999999887554 8888888888888889999999999887632 11123456788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 377 KVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
..+++.+... +.+..++.++.-.|...|+++.|...|.+.. .+.||..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999999873 4688999999999999999999999999988 4688887777777643
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=4.1e-10 Score=110.46 Aligned_cols=269 Identities=11% Similarity=0.067 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh---------CCChhhHHHHHHHHH
Q 041882 108 RCKETLFISLIQHYGK-----AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD---------NDRVDDAKRMFDDAD 173 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 173 (491)
+.+...|...+.+-.. .+++++|+..|++..+.++. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554321 24568999999999887633 56677666655542 245789999999998
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041882 174 KMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT 253 (491)
Q Consensus 174 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (491)
+.. +-+...+..+...+...|++++|...|++..+.+.. +...+..+..++...|++++|+..+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 236677888888889999999999999999987533 6778888999999999999999999999987544 3333
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK 333 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (491)
+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++...... +....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 33445556778999999999999876642234555677888888999999999999988665322 44556666667777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 334 EDRAAEAYKVLTEMQIGG-CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
.| ++|...++.+.+.. ..+....+.. ..+.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777765531 1222222223 334455676666665 7777754
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.1e-10 Score=99.08 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444443332 1133344444444444444444444444444332 112233334444444
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 041882 193 KKGEWEEASRVFDEMLEREV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
..|++++|.+.++...+... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444443211 112223344444445555555555555554443211 2334444444555555555555
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
..+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555554443 12233333444444445555555555544443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.4e-10 Score=98.76 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554432 1133444444555555555555555555554442 22333444445555
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQY-KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
...|++++|...++....... ......+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544311 1123344455556666666666666666665532 23344555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666654 223445555555666666666666666665543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.5e-07 Score=87.52 Aligned_cols=260 Identities=12% Similarity=0.046 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC----------- 282 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------- 282 (491)
..|..+.+.|-..|+.+.|..+|++..+-..+-- ..+|......=.+..+++.|.++++......-
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3567777778888888888888888776533211 23455555555566777777777766543211
Q ss_pred CC------ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 283 KP------QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356 (491)
Q Consensus 283 ~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (491)
++ +...|...++.-...|-++....+|+++.+..+. ++...-.....+-.+.-++++.+.+++-...--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 1233444555555667788888888888877665 4443333343445566678888888775554334554
Q ss_pred -HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHH
Q 041882 357 -ATYRMMVDGFLR---VEDFEGSLKVLNAMLTSRHCPRLE--TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD--LKA 428 (491)
Q Consensus 357 -~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 428 (491)
..|+..+.-+.+ ....+.|..+|+++++ |.+|... .|......--+.|....|..++++.... +++. ...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 355655554443 2468999999999998 5655432 2222333334568888999999997653 4443 357
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHhhhhhhhh--hhHHHHHHHHHhcCCCcchhh
Q 041882 429 WEGLVTDACIGDGNAGGLVEIRDMRDYSMAIS--SVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 429 ~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~ 481 (491)
||..|.-....=+....-..+++.++. + |+ ...-+...+..-.+.|....+
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~-L-p~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIES-L-PDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHh-C-ChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 888887655555544555555555544 2 32 233344445555555544433
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=4.7e-11 Score=101.15 Aligned_cols=230 Identities=11% Similarity=-0.010 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
+.+.++|.+.|.+.+|.+-++...+. .|-+.||-.|-++|.+..++..|+.++.+-.+. ++-|+....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999887776 456778888999999999999999999988775 333444455567778888
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
++.++|.++|+...+.. +.+......+...|.-.++++.|.++|+++...|+. ++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988875 566677777777788889999999999999999988 8999999999999999999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 345 TEMQIGGCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 345 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.+....--.|+. .+|-.+.......||+..|.+.|+-.+.++ ..+...++.|...-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888765333443 467777777788899999999999888864 345778899988889999999999999988754
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=5.1e-09 Score=99.34 Aligned_cols=289 Identities=15% Similarity=0.109 Sum_probs=132.9
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----C
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA-----H 125 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 125 (491)
+...|++++|++.++.-.. .+.............+.+.|++++|..+|..+.+.+ |.+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 4455666666666654332 223333344555566666666666666666666665 34444444444444221 1
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh-hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD-DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
+.+...++++++...- |...+...+.-.+.....+. .+..++..+...|++ .+|+.+-..|......+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3455555555554432 22222222222222212222 233334444444433 23444444444333333344444
Q ss_pred HHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 041882 205 DEMLER----E----------VPPTV--VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYN 268 (491)
Q Consensus 205 ~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (491)
...... + -+|+. .++.-+...|...|++++|+++++..++.... .+..|..-...+-..|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 443321 0 11222 12233444555555666666666555554211 2444555555555556666
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhcCCHHHH
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVV------TY--NILINYLCKEDRAAEA 340 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~~~~~~a 340 (491)
+|.+.++...... .-|...-+-.+..+.+.|++++|.+++......+..|... .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6555555555543 3344444445555555555555555555555443322111 11 2233445555555555
Q ss_pred HHHHHHHH
Q 041882 341 YKVLTEMQ 348 (491)
Q Consensus 341 ~~~~~~~~ 348 (491)
++.|..+.
T Consensus 325 Lk~~~~v~ 332 (517)
T PF12569_consen 325 LKRFHAVL 332 (517)
T ss_pred HHHHHHHH
Confidence 55555443
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=3.1e-09 Score=100.83 Aligned_cols=128 Identities=14% Similarity=0.024 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...|...|++++|.++++...++.+. .+..|..-...+-+.|++.+|.+.++...... .-|...-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 344556666777777777777777776443 46667777777777777777777777776643 2344444445566677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--------hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLE--------TFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|++++|.+++..+...+..|... .......+|.+.|++..|++-|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776654332211 12344567777777777776665554
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=5e-08 Score=90.70 Aligned_cols=416 Identities=12% Similarity=0.097 Sum_probs=232.5
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
|...|+.++|....+...+.+ .-+...|..+.-.+...+++++|.+.|......+ +.|..++.-+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 455678888888887776644 4455677777777777788888888888888776 66777777776667777888877
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHH------HHHHhcCChHHHHHH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMI------KGRLKKGEWEEASRV 203 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll------~~~~~~~~~~~a~~~ 203 (491)
......+.+.. +.....|..+..++...|+...|..++++..+.. ..|+...+.... ....+.|..+.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 77777766653 2245677788888888888888888888877653 245555553322 234566777777776
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHhHHH-HHHHHHHHcC
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLM-EGLCFKGEYNEAK-KMMFDMAYRG 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~-~~~~~~~~~~ 281 (491)
+...... +.-....-..-...+.+.+++++|..++..++.. .||...|...+ .++.+..+..++. .+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 6554432 1112222334455677788888888888888876 34555444443 4443333333333 455544433
Q ss_pred CCCChhcHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-----
Q 041882 282 CKPQLVNFG-VLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI----GG----- 351 (491)
Q Consensus 282 ~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----- 351 (491)
.|....-. .=+.......-.+..-.++......|+.+ ++..+...|-.....+-..++...+.. .|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 11111110 01111111111223334444555555442 233333333222211111111111111 11
Q ss_pred -----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 352 -----CKPNAATY--RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 352 -----~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
-+|+...| -.++..+-..|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..++++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 14555443 34566777888888888888888775 344 34555666778888888888888888876532
Q ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhh-------hhhHHHHHHHHHhcCCCcchh
Q 041882 424 FDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAI-------SSVMNVVDLLWTYLGMGTCVV 480 (491)
Q Consensus 424 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~ 480 (491)
+|...=.--.....+.+..++|.+.+-..-+.|... .=......-|..|.++|++..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 232222233333444555555555554444444211 112222333455666666643
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-08 Score=92.76 Aligned_cols=431 Identities=11% Similarity=-0.010 Sum_probs=270.3
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
+...+..+++....+.++.-|+-+-++....+ -|+...-.+++.+.-.|+++.|..++..-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445667777888888999988888776544 56666777888888889999988888665332 346677777888
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCC---------CCcCHHH----HHHHH-------HHHHhCCChhhHHHHHHHHHHC
Q 041882 120 HYGKAHLVDKAIEVFNRM----TSFD---------CVRTLQS----FNSLL-------DILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+.+..++++|..++... .... +.+|..- -+.-. ..|....++++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888999999999988822 1110 0001000 11111 2333344566777676665543
Q ss_pred CCCCCHHhHHHHHH---HHH-----------------hcC-ChHHHHHHHHHHHh----------------CCCCCChhh
Q 041882 176 GFRPNLISFNVMIK---GRL-----------------KKG-EWEEASRVFDEMLE----------------REVPPTVVT 218 (491)
Q Consensus 176 ~~~p~~~~~~~ll~---~~~-----------------~~~-~~~~a~~~~~~~~~----------------~~~~~~~~~ 218 (491)
|...|..+.. ... -.+ +.+....+|+.... .+..-+...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 4444332221 111 001 11111112221100 012224444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
......-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+...+=.++++.- +....+|-++.-.|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 555556677788899999999988876 33455556666678888888888887777777763 5567788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKV 378 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 378 (491)
.|+..+|.+.|.+....+.. -...|-.+...|+-.+..++|...+...-+. ++-...-+--+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 89999999999887765433 3456777888888888888888877766543 111111122233346667777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 041882 379 LNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR--KMR----FDLKAWEGLVTDACIGDGNAGGLVEIRDM 452 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~m 452 (491)
|.++... .+.|+.+.+-+.-.....+.+.+|..+|+..... .+. --..+++.|..++.+.+.+++++..+++.
T Consensus 403 f~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 7777664 2335666666666666677777777777766521 011 12345666777777777777777777765
Q ss_pred hhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHh
Q 041882 453 RDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQ 485 (491)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 485 (491)
.... |.++.....+|.+|.-+|..+.|..+-
T Consensus 482 L~l~--~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 482 LLLS--PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHcC--CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 5554 777777777777777777776665553
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=2.6e-10 Score=108.87 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=152.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 041882 98 VLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF 177 (491)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 177 (491)
.+-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|...+.+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777777777888888888888877777 7777766666666777777777777777766554
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHH
Q 041882 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-KGTYPNAVTYAL 256 (491)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 256 (491)
.|...+|..|..+|...||+..-..+=+.+. .+...+...|.-..-..++..+.- -+..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4667778888888887777655111111111 122223333333333333322211 112223221
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 336 (491)
.+.-....|-|+.+.+++..+....-. . .+..+++-+... ..-.+++........-.|++.+|..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 222223344455554444333221100 0 111112222221 12222232222222114677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
.+.|..++.+|.+.|++.+..-|..++.+ .++...++.+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777777777777777766666655 66667777777777777777777777777666666544
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=7.9e-10 Score=93.87 Aligned_cols=230 Identities=13% Similarity=0.022 Sum_probs=160.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+.++...|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66777777888888888877776665 456667777777888888888888887776664 333444445566777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
++.++|.++|+...+... .++.....+...|.-.++.+.|+++|+++...|+ -+...|+.+.-+|.-.++++-+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 778888888887776532 2555556666677777778888888888877773 45666777777777777777777777
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 310 SEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 310 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+....-..|+ ..+|-.+.......|++..|.+.|+-....+ .-+...++.+.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77665433333 3456666666667788888888887776553 444567777776677778888888888777663
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1.1e-11 Score=77.95 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=40.3
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041882 389 PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI 438 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 438 (491)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=4.6e-09 Score=98.48 Aligned_cols=238 Identities=18% Similarity=0.159 Sum_probs=174.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC
Q 041882 181 LISFNVMIKGRLKKGEWEEASRVFDEMLER-----E-VPPTVV-TYNSLIGFLCRTGEMGKAKGLFEDMIKK-----GTY 248 (491)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~ 248 (491)
..++..+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666889999999999999999887664 2 122322 2344777888999999999999998753 221
Q ss_pred -C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 041882 249 -P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR-----GC-KPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR---Q 316 (491)
Q Consensus 249 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 316 (491)
| -..+++.|..+|.+.|++++|...++...+- +. .|. ...++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2356777888899999999998888776542 11 122 223566777788899999999998866542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 041882 317 YKP----DVVTYNILINYLCKEDRAAEAYKVLTEMQIG-----G-CKPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLT- 384 (491)
Q Consensus 317 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 384 (491)
+.+ -..+++.|...|...|++++|.+++++.... | ..+. ...++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2457899999999999999999999987653 1 1222 34677888899999999989888876543
Q ss_pred ---CCCC-C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 385 ---SRHC-P-RLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 385 ---~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.|.. | ...+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2321 2 35688999999999999999999988876
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=3.5e-07 Score=86.97 Aligned_cols=371 Identities=10% Similarity=-0.019 Sum_probs=241.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HhH
Q 041882 106 NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL-ISF 184 (491)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~ 184 (491)
.+..+..+|..+.-+..++|+++.+.+.|++....-. ...+.|+.+...|...|.-..|..+++......-.|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556888999999999999999999999999876533 36788999999999999999999999886654323433 333
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHhC--C--CCCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCC
Q 041882 185 NVMIKGRL-KKGEWEEASRVFDEMLER--E--VPPTVVTYNSLIGFLCRT-----------GEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 185 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 248 (491)
-..-..|. +.+.+++++.+-.++... + -......|..+.-+|... ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333343 346677777766666551 1 112334454454444422 1245788888888876543
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC--------
Q 041882 249 PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKP-------- 319 (491)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-------- 319 (491)
|+.+.-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. +...
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333333344457788899999999999998865777888888888888899999999998876543 1100
Q ss_pred ----------CHHHHHHHHHHHH------hcC-----------------CHHHHHHHHHHH--------HhCC-------
Q 041882 320 ----------DVVTYNILINYLC------KED-----------------RAAEAYKVLTEM--------QIGG------- 351 (491)
Q Consensus 320 ----------~~~~~~~li~~~~------~~~-----------------~~~~a~~~~~~~--------~~~~------- 351 (491)
...|...++..+- ..+ +..++.+..+.+ ...|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 0111222221111 000 111111111110 0001
Q ss_pred --CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 352 --CK--PN------AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 352 --~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
+. |+ ...|......+...++.++|...+.++.... +-....|......+...|++++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 01 11 1123344556777788888887777776642 345667777778888999999999999998864
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCcchhH--HHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhh
Q 041882 422 MRFD-LKAWEGLVTDACIGDGNAGGLV--EIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 422 ~~~~-~~~~~~ll~~~~~~~~~~~~~~--~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 483 (491)
.|+ .....++...+...|+..-+.+ .+.++.+. +|.++..|..+|.++.++|+...+..
T Consensus 714 -dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred -CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHH
Confidence 454 5677788888888887555666 44555554 49999999999999999998776543
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.2e-07 Score=85.55 Aligned_cols=382 Identities=15% Similarity=0.160 Sum_probs=233.3
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
-++.....|++++|++...++...+ +.+...+..-+.++.+.+.|++|+.+.+.-.... .+...+..=..+.-+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 3455566789999999999999866 7777888888899999999999996665433211 111111122333457899
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---------------------------
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP--------------------------- 179 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--------------------------- 179 (491)
.++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+..-
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9999999883322 244466777788889999999999999885543210
Q ss_pred CHHhHHHHHH---HHHhcCChHHHHHHHHHHHhCC-------CCCChh-------hHHHHHHHHHhcCChhHHHHHHHHH
Q 041882 180 NLISFNVMIK---GRLKKGEWEEASRVFDEMLERE-------VPPTVV-------TYNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 180 ~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
...+|..+.+ .+...|++.+|+++++.....+ -.-+.. .-.-+..++...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1123333332 3456788999999888873321 111111 1223445667789999999999888
Q ss_pred HHcCCCCCHHH----HHHHHHHHHhcCCHhH--------------HHHHHHHHH--------------------------
Q 041882 243 IKKGTYPNAVT----YALLMEGLCFKGEYNE--------------AKKMMFDMA-------------------------- 278 (491)
Q Consensus 243 ~~~~~~~~~~~----~~~ll~~~~~~~~~~~--------------a~~~~~~~~-------------------------- 278 (491)
++.... |... .|.++. +....++.. +..+...+.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 876432 3211 122211 111111000 000000000
Q ss_pred ---Hc-CCCCChhcHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 041882 279 ---YR-GCKPQLVNFGVLMSDLGK--RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLT------- 345 (491)
Q Consensus 279 ---~~-~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------- 345 (491)
.. +..|. ..+.+++..+.+ ......+.+++....+....-...+.-.+++.....|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 00 11122 233334333322 22366677777776665444345566677777888999999999998
Q ss_pred -HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 346 -EMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS--RHCPR----LETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 346 -~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.+.+.+.. +.+...++..+.+.++.+.|..++...+.. .-.+. ..++..++..-.+.|+.++|..+++++.
T Consensus 408 ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 55544433 345556667778888877788877777652 01112 2233444445567899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 041882 419 KRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
+. ..+|..+...++.+|++.+-
T Consensus 486 k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 486 KF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred Hh-CCchHHHHHHHHHHHHhcCH
Confidence 85 35688899999998887764
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.7e-11 Score=77.00 Aligned_cols=49 Identities=47% Similarity=0.925 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 214 PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 214 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555543
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.3e-07 Score=81.62 Aligned_cols=361 Identities=13% Similarity=0.083 Sum_probs=177.8
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
-.-+.|++++|+..++.+.+.. .++...+..|.-...-.|.+.+|..+.....+ ++-....++...-+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 3456799999999999888754 56666777777777778889998887765543 22333344444455566555
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI-KGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~ 208 (491)
-..+-+.+.. +.+---+|.......-.+++|++++...... .|+-...|..+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5555444433 2233334444444445566777777766654 23444444332 34455555666666665554
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--------------HHHcCC------------CC-----CHHHHHHH
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED--------------MIKKGT------------YP-----NAVTYALL 257 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------~~~~~~------------~~-----~~~~~~~l 257 (491)
+. ++-++...|.......+.=+-..|..-.+. +.+.++ -| -+..-..+
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL 291 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNL 291 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhh
Confidence 43 222233333222222211111111111111 111000 00 01111223
Q ss_pred HHHHHhcCCHhHHHHHHHHHH--------------------------------------HcCCCCChhc-HHHHHHHHHh
Q 041882 258 MEGLCFKGEYNEAKKMMFDMA--------------------------------------YRGCKPQLVN-FGVLMSDLGK 298 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~--------------------------------------~~~~~~~~~~-~~~ll~~~~~ 298 (491)
+--|.+.++..+|..+.+++. +.+..-|... -..+..++.-
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 333445555555555444332 2222222111 1122222333
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM-MVDGFLRVEDFEGSLK 377 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~ 377 (491)
..++++....++.+..--...|...+ .+.++++..|++.+|+++|-.+....+ .|..+|.+ +.++|.+.+.++.|+.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 33455555555554443222233333 356666667777777777766554332 23444443 4456677777777666
Q ss_pred HHHHHHhCCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041882 378 VLNAMLTSRHCPRLET-FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (491)
++-++.. +.+..+ ...+..-|.+++.+--|-+.|+.+.. ..|++..|..
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 5443322 222222 23334566677777777777777664 3566666643
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=9.6e-09 Score=96.34 Aligned_cols=238 Identities=21% Similarity=0.184 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CcCHH-HHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSF-----DC-VRTLQ-SFNSLLDILVDNDRVDDAKRMFDDADKM-----GF- 177 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 177 (491)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355556777777777777777777766543 10 12332 2334666777778888888877776543 21
Q ss_pred CC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc---C
Q 041882 178 RP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER-----EV-PPTV-VTYNSLIGFLCRTGEMGKAKGLFEDMIKK---G 246 (491)
Q Consensus 178 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 246 (491)
.| -..+++.|..+|.+.|++++|...++...+. +. .|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1345666667788888887777777665432 11 1121 23455666777778888888777765532 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C---CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 041882 247 TYP----NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG----C---KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK- 314 (491)
Q Consensus 247 ~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 314 (491)
+.+ -..+++.+...|...|++++|.++++..+... . .-....++.+...|.+.+++.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 24567788888888888888888888776431 1 11234566777778888888878777765432
Q ss_pred ---cCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 315 ---RQYK-P-DVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 315 ---~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
.|+. | ...+|..|...|...|++++|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221 1 34578888888888888888888877665
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=3.6e-08 Score=88.64 Aligned_cols=229 Identities=12% Similarity=-0.033 Sum_probs=159.8
Q ss_pred hhhcCChHHHHHHHHHhhhCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGS-KH--SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+...+..+.++..+.+++.... .| ....|..+...+...|+++.|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 3344677888888888875431 22 23457778888899999999999999999887 66789999999999999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++|+..|++..+.+.. +..+|..+..++...|++++|++.|+...+.. |+..........+...++.++|...|...
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999886533 57788889999999999999999999988763 44332223333345567899999999775
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---C---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG---T---YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
.... .++...+ .......|+...+ +.++.+.+.. . +....+|..+...+.+.|++++|...|+...+.+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5432 2232222 2233345666554 3445544321 1 0123467778888888888888888888888765
Q ss_pred CCCChhcH
Q 041882 282 CKPQLVNF 289 (491)
Q Consensus 282 ~~~~~~~~ 289 (491)
+++..-+
T Consensus 267 -~~~~~e~ 273 (296)
T PRK11189 267 -VYNFVEH 273 (296)
T ss_pred -CchHHHH
Confidence 3343333
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=2.4e-06 Score=79.79 Aligned_cols=383 Identities=11% Similarity=0.103 Sum_probs=233.0
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQ-MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
|..++.-+..+|+...-...|++.+. ..+.-....|...+......+-.+.+..++++.++.. +..-+..+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHH
Confidence 34566677778888888888877664 3334445578888887777888888888888887653 344666777888
Q ss_pred hcCCHHHHHHHHHHhhhCC------CCcCHHHHHHHHHHHHhCCCh---hhHHHHHHHHHHCCCCCC--HHhHHHHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFD------CVRTLQSFNSLLDILVDNDRV---DDAKRMFDDADKMGFRPN--LISFNVMIKGR 191 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~ 191 (491)
..+++++|-+.+..+...+ .+.+-..|+.+....+++-+. -....+++.+... -+| ...|+.|.+-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 8888888888888775431 123455677666666655432 2333444444432 234 34678888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHcCC--
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG----------------------EMGKAKGLFEDMIKKGT-- 247 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~-- 247 (491)
.+.|.++.|..+|++....- .+..-|..+.++|++-. +++-.+..|+.+...+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999998877642 23444444444444211 12233334444433211
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------hhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 248 ---------YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ------LVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 248 ---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.+...|..-+. ...|+..+....+.+..+. +.|. ...|..+...|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 112222322222 3345566666777776654 1221 245677888888999999999999988
Q ss_pred HHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------C------CCHHHHHHHHHHHHhcCCH
Q 041882 313 KKRQYKPD---VVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-----------K------PNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 313 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~------~~~~~~~~li~~~~~~~~~ 372 (491)
.+-..+-- ..+|..-...-.+..+++.|+++++.....-- + .+...|...+..--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87644311 23455555555677888888888877653210 1 1223344445555567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 041882 373 EGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACI 438 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 438 (491)
+....+++++++..+. ++.+.......+-.+.-++++.+++++=+..=--|+ ...|+..+..+.+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 8888888888887543 333333444445566667777777776543311233 3567777776554
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=3.8e-08 Score=79.91 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=95.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
|.-.|.+.|++..|..-+++.+++. +.+..++..+...|.+.|..+.|.+.|++....... +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3344455555555555555555554 334445555555555555555555555555444322 44455555555555555
Q ss_pred hhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041882 162 VDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFE 240 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 240 (491)
+++|...|++..... +.--..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.......|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554431 1111234444555555555555555555555554322 33344444555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 241 DMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
.....+. ++..+.-..|..--..|+.+.+.++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5544433 444444444444445555555544444443
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.3e-07 Score=78.06 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=146.7
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI-SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
-|+.....+..++...|+.++|+..|++.... .|+.. ......-.+.+.|+++....+...+.... .-....|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 35566666666666666666666666665543 22221 11112222345566666666555555432 1133344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
+......+++..|+.+-++.++.... +...+-.-...+...++..+|.-.|+..+... +-+..+|..|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 44455566666666666666654222 33333333345556666666666666665543 34566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILI-NYLC-KEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
.+|..+-+...+. ...+..+...+. ..+. ....-++|-+++++.... .|+. ...+.+...|...|..+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7666655554443 112344443331 2221 122345666666655542 3443 34455556666677777777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++.+.. .||....+.|.+.+...+.+.+|...|......
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 766663 466666677777777777777777777766643
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.7e-07 Score=79.04 Aligned_cols=415 Identities=14% Similarity=0.090 Sum_probs=198.2
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFI-SLIQHY 121 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 121 (491)
..++.+..+.+..++..|++++....++. +.+......+...|-+..++..|-+.++++...- |...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 34556666666666777776666555543 3355566666666666666777777666666542 2222222 123344
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH--HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD--ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
-+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 4556666666666665542 22211111122 2223456666666666554322 23333333333446666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCCHhHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT----YALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
|.+-|+...+-+--.....|+..+. ..+.|+++.|+++..++++.|+.-.+.. ..-.+.+ ...|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH
Confidence 6666666555432223444544333 3345666666666666666655311100 0000000 000000 00000
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP 354 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 354 (491)
. .-...+|.-...+.+.++++.|.+-+-.|.-+ ....|++|...+.-.= ..+++.+..+-+.-+...+ +-
T Consensus 238 ----S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 238 ----S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred ----H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 0 00112222233445677778887777776432 2334566655443221 2344555555555555443 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PRLETFSCLLVGLLK-GGKVDDACFVLEEMEKRKMRFDLKAWEGL 432 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (491)
...||..++-.||+..-++.|..++.+-...... .+...|+ +++++.- .-..++|.+-++.+... ..-......+-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~ 386 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQ 386 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5568888888888887788777776543222111 2333333 3444443 44566666665555432 00011112222
Q ss_pred HHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 433 VTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 433 l~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
++. .+..+.+.++....+--+..+ .-....+...+|.|-+..+++.+++.
T Consensus 387 vQe-~r~~~dd~a~R~ai~~Yd~~L-E~YLPVlMa~AkiyW~~~Dy~~vEk~ 436 (459)
T KOG4340|consen 387 VQE-ARHNRDDEAIRKAVNEYDETL-EKYLPVLMAQAKIYWNLEDYPMVEKI 436 (459)
T ss_pred HHH-HHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccHHHHHH
Confidence 221 222232222222111111111 11234567778888888888877765
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3e-07 Score=81.05 Aligned_cols=305 Identities=12% Similarity=0.050 Sum_probs=216.7
Q ss_pred CCHHhHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH
Q 041882 74 HSYPSYASLIYKLAR--ARDFDAVETVLGYIQD-FNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN 150 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (491)
|..++...-+.+++. .++-..+...+-.+.. .-++.++.....+...+...|+.++|+..|++....++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 333333344444443 3444444444443333 235778899999999999999999999999998876522 444455
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
...-.+...|+.+....+...+.... +-....|-.-.......++++.|+.+-++.++.+.. +...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 55556667888888888887776542 123334444444556678899999999988876433 5666666667888999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHH-HHHH-hcCChHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLM-SDLG-KRGKIEEAKSL 308 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~ 308 (491)
++++|.-.|+...... +-+...|.-++.+|...|.+.+|.-+-....+. .+.+..+...+. ..+. .-..-++|..+
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999999999987753 237789999999999999999988776655443 133344444331 2222 22235788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
++.....++. -....+.+...+...|..++++.++++... ..||....+.+.+.+...+.+++|++.|..++..+
T Consensus 427 ~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 427 AEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8887775433 344567777888899999999999999876 37899999999999999999999999999998853
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.7e-06 Score=82.48 Aligned_cols=396 Identities=12% Similarity=0.047 Sum_probs=261.2
Q ss_pred CChHHHHHH----HHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 55 RDPDEALSL----FHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
.+..++... +.++....+.-+...|..+.-++...|+++.+.+.|+.....-+ -....|..+...|...|.-..|
T Consensus 298 e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 298 ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHH
Confidence 445555443 23334444566888999999999999999999999999876543 3457788888889999999999
Q ss_pred HHHHHHhhhCCCCc-CHHHHHHHHHHHHh-CCChhhHHHHHHHHHHC--CC--CCCHHhHHHHHHHHHhc----------
Q 041882 131 IEVFNRMTSFDCVR-TLQSFNSLLDILVD-NDRVDDAKRMFDDADKM--GF--RPNLISFNVMIKGRLKK---------- 194 (491)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~ll~~~~~~---------- 194 (491)
..+++.-......| +...+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|...
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 99998876543223 34444444444544 36677777777766652 11 11223333333333311
Q ss_pred -CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 041882 195 -GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 195 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
....++++.+++..+.+.. |+....-+.--|+..++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+
T Consensus 457 ~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2245677788888776543 33333344455677889999999999999886666888999999999999999999999
Q ss_pred HHHHHHc-CCC------------------CChhcHHHHHHHHHh---------c--------------CChHHHHHHHHH
Q 041882 274 MFDMAYR-GCK------------------PQLVNFGVLMSDLGK---------R--------------GKIEEAKSLLSE 311 (491)
Q Consensus 274 ~~~~~~~-~~~------------------~~~~~~~~ll~~~~~---------~--------------~~~~~a~~~~~~ 311 (491)
.+..... |.. ....|...++..+-. . ++..++......
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8876654 110 001122222222210 0 011111111111
Q ss_pred H----H----HcC---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 312 M----K----KRQ---------Y--KPD------VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 312 ~----~----~~~---------~--~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
+ . ..+ . .|+ ...|......+.+.++.++|...+.+.... .+.....|......+
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHH
Confidence 0 0 001 0 111 224556667777888889998888877653 244555666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACF--VLEEMEKRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
...|.+++|.+.|......+ +.+....+++..++.+.|+..-|.. ++..+.+.+. .+...|..+...+-+.|+...
T Consensus 695 ~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 88999999999999998853 2356788999999999999888877 9999998653 378899999999999999888
Q ss_pred hhHHHHHHhhh
Q 041882 445 GLVEIRDMRDY 455 (491)
Q Consensus 445 ~~~~~~~m~~~ 455 (491)
+.+-+....+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 88877655543
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.8e-07 Score=82.08 Aligned_cols=376 Identities=12% Similarity=0.045 Sum_probs=221.0
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+.....|+++.|+..|...+... ++|...|..-..++...|++++|.+=-....+.+ |..+..|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 34667899999999999988876 4588888888999999999999988777777765 556688999999999999999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH---HHHHHHHHHC---CCCCCHHhHHHHHHHHH----------
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA---KRMFDDADKM---GFRPNLISFNVMIKGRL---------- 192 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~---~~~p~~~~~~~ll~~~~---------- 192 (491)
+|+..|.+-.+.... +...++.+..++......... -.++..+... ........|..++...-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999998887532 566677777666211000000 0000000000 00000111111111110
Q ss_pred hcCChHHHHHHHHH-----HHhCC-------CCC----------------------ChhhHHHHHHHHHhcCChhHHHHH
Q 041882 193 KKGEWEEASRVFDE-----MLERE-------VPP----------------------TVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 193 ~~~~~~~a~~~~~~-----~~~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
....+..+.-.+.. +...+ ..| -..-...+.++..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 00001111111100 00000 000 011234566666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH-------HHHHHHhcCChHHHHHHHHH
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV-------LMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~ 311 (491)
+....... -+..-++....+|...|.+......-....+.|- -....|+. +..+|.+.++.+.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 77776654 2444455555666666666665555555444431 11111221 22344555666666666666
Q ss_pred HHHcCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 312 MKKRQYKPDVVT-------------------------YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 312 ~~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
.......|+... ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 544333332211 1112445667788999999999888765 66677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
.+.|.+..|+.-.+..++.+ ++....|..-..++....++++|.+.|++..+. .|+..-+...+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 89999998888888887753 233455555566666777888888888888865 345444433333
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.8e-07 Score=84.08 Aligned_cols=218 Identities=15% Similarity=0.028 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHhhhCC---CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 125 HLVDKAIEVFNRMTSFD---CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
+..+.++.-+.++.... .......|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 11123456666667777777777777777776653 224566777777777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
..|+...+.... +..+|..+..++...|++++|.+.|+...+.... +. ........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777665332 4556666677777777777777777777665322 22 11111222334556777777775544322
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR---QYK---PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
.++... ..+. ....|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222211 1222 2223444333 233333321 000 123456677777777777777777777776643
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=1e-06 Score=82.31 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNI-RCKE-TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++.....+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 445555555556666666665555444321 1121 2222233344566777778777777766532 23334332 222
Q ss_pred HHh----CCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 156 LVD----NDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 156 ~~~----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.... +...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 222 23344444444331 111222 223334455667777777777777777776432 4556677777777777
Q ss_pred ChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGT-YPNA--VTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
++++|..++++...... .++. ..|..+...+...|++++|..+++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665422 1222 2344566667777777777777777643
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=3.6e-06 Score=78.77 Aligned_cols=401 Identities=14% Similarity=0.118 Sum_probs=255.7
Q ss_pred CCCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 39 RKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.+...|..+--......++++|++.|..+...+ +.|...+..+.-.-++.|+++..........+.. +.....|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 344556666666677889999999999999865 6778888888888889999999999888888765 44566788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC-CCcCHHHHHHHH------HHHHhCCChhhHHHHHHHHHHCCCCCCHHhH-HHHHHH
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFD-CVRTLQSFNSLL------DILVDNDRVDDAKRMFDDADKMGFRPNLISF-NVMIKG 190 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~ 190 (491)
.++--.|+...|..++++..+.. -.|+...+.... ....+.|..+.|++.+..-... ..|...+ ..-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 88888999999999998886653 235655554433 4456678888888887765443 1233333 344566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 041882 191 RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK-GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNE 269 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (491)
+.+.+++++|..++..+...... +...|..+..++.+..+..++. .+|....+.-.. ....-..=+.......-.+.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHH
Confidence 78899999999999999987422 4444444555554333333333 666665543111 11000111111112222344
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHh
Q 041882 270 AKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK----RQ----------YKPDVVTY--NILINYLCK 333 (491)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~ 333 (491)
.-.++..+.+.|+++- +..+...|-.-...+-.+++.-.+.. .| -+|....| -.++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 5566677777776543 34444444332222211222111111 11 14555444 456777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 041882 334 EDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
.|+++.|..+++....+ .|+. ..|..-.+.+...|+++.|..++++..+.+ .+|..+-.--+.-..++++.++|.+
T Consensus 384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 99999999999998865 4554 355555678888999999999999998864 3666655567777889999999999
Q ss_pred HHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCCcchhHHHHH
Q 041882 413 VLEEMEKRKMR--FD----LKAWEGL--VTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 413 ~~~~~~~~~~~--~~----~~~~~~l--l~~~~~~~~~~~~~~~~~~ 451 (491)
+...+.+.|.. -+ .-.|-.+ ..+|.+.+++..|++.+..
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 99999887741 01 1123222 2245555566556655543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.9e-06 Score=76.49 Aligned_cols=379 Identities=13% Similarity=0.164 Sum_probs=214.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
+..+.+.+++++|.+....+...+ +.+...+.+-+.+..+.+++++|+.+.+.-... ..+...+-.-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556678899999999999999887 777888888889999999999999665543221 11111112224455678999
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------C
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP---------------------------T 215 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~ 215 (491)
++|+..++-+. +-|..+...-...+.+.+++++|+.+|+.+.+.+..- .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999988322 1234467777788999999999999999996653210 1
Q ss_pred hhhHHHH---HHHHHhcCChhHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 216 VVTYNSL---IGFLCRTGEMGKAKGLFEDMIKK-------GTYPNAV-------TYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 216 ~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
..+|..+ .-.+...|++.+|+++++...+. +-.-+.. .-..+.-.+-..|+..+|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1123222 23445678888888888877322 1111111 11223445567788888888888887
Q ss_pred HcCCCCChhcH----HHHHHHHHhc---------------------------------------------CChHHHHHHH
Q 041882 279 YRGCKPQLVNF----GVLMSDLGKR---------------------------------------------GKIEEAKSLL 309 (491)
Q Consensus 279 ~~~~~~~~~~~----~~ll~~~~~~---------------------------------------------~~~~~a~~~~ 309 (491)
+.. .+|.... |.|+.+-... +..+.+.++-
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 764 2332111 1111100000 0000000000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 041882 310 SEMKKRQYKPDVVTYNILINYLC--KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLN------- 380 (491)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------- 380 (491)
.... +..|. ..+..++.... +...+..+.+++...-+..-.-...+.-.+++.....|+++.|.+++.
T Consensus 331 a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 331 ASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 0000 11111 22233333222 122355666666665543211123344455666777888888888888
Q ss_pred -HHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 381 -AMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR--KMRFD----LKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 381 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
.+.+.+. .+.+...+...+.+.++.+.|..++.+..+- .-.+. ..+|.-+..--.+.|...++...++++.
T Consensus 408 ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 4444332 3344555666667766666666666655421 00111 2233333333345567777777778777
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCC
Q 041882 454 DYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
... |.+...+..+.-.|....
T Consensus 486 k~n--~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 486 KFN--PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HhC--CchHHHHHHHHHHHHhcC
Confidence 765 777777777777766554
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.9e-07 Score=75.97 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=99.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
.|.-.|...|+...|.+-+++.++.+.. +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|..-.-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 3444455555555555555555554322 4445555555555555555555555555544222 3444455555555555
Q ss_pred CHhHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAYRG-CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
++++|...|+...... ......+|..+.-+..+.|+.+.|...|++..+.... .+...-.+.......|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554431 1111234444444455555555555555555554333 3334444555555555666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+.....+ .++.......|+.-...|+.+.+-++=.++..
T Consensus 197 ~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555443 25555555555555555555555555444444
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=1e-06 Score=82.35 Aligned_cols=306 Identities=12% Similarity=-0.024 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC-VRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI 188 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 188 (491)
...+..+...+...|+.+.+...+.+...... ..+ ..........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667777878877766666544321 112 2223333445667889999999999887763 223333332 1
Q ss_pred HHHH----hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 189 KGRL----KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 189 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
..+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 1222 2345555555554411 112222334455667788899999999999999887433 566777888888899
Q ss_pred CCHhHHHHHHHHHHHcCC-CCCh--hcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCH
Q 041882 265 GEYNEAKKMMFDMAYRGC-KPQL--VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-KPDVVTY-N--ILINYLCKEDRA 337 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~ 337 (491)
|++++|...+........ .++. ..+..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999988776532 1222 2344677788889999999999988764432 1111111 1 222223333432
Q ss_pred HHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHcCC
Q 041882 338 AEAYKV--LTEMQIGGC--KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--------PRLETFSCLLVGLLKGG 405 (491)
Q Consensus 338 ~~a~~~--~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g 405 (491)
..+.+. +........ ............++...|+.+.|...++.+...... ...........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111110 111122224566777888888888888887663211 01222233334456788
Q ss_pred CHHHHHHHHHHHHHC
Q 041882 406 KVDDACFVLEEMEKR 420 (491)
Q Consensus 406 ~~~~a~~~~~~~~~~ 420 (491)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877653
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=2.7e-07 Score=89.95 Aligned_cols=426 Identities=12% Similarity=0.043 Sum_probs=230.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVF 134 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 134 (491)
.+...|+..|-+..+..... ...|..|...|....|...|.+.|+..-+.+ .-+......+...|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 44666666666555544222 3478888888888888888999998888876 556777888888999999999888874
Q ss_pred HHhhhCCC-CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 041882 135 NRMTSFDC-VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP 213 (491)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 213 (491)
-..-+... ..-...|....-.|.+.++...++.-|+...+..+ -|...|..+..+|..+|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33322110 11223455555666677778888888877776542 26677788888888888888888888776654 2
Q ss_pred CChhhHHH--HHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-------H
Q 041882 214 PTVVTYNS--LIGFLCRTGEMGKAKGLFEDMIKK------GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM-------A 278 (491)
Q Consensus 214 ~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~ 278 (491)
|+. .|.. ....-+..|.+.+|+..+...... +..--..++..+...+...|-...+.++++.- .
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 222 2211 222345667777777776665432 00001111211111111111111111111111 1
Q ss_pred HcC--------------------CCCC------------------------------------------hhcHHHHHHHH
Q 041882 279 YRG--------------------CKPQ------------------------------------------LVNFGVLMSDL 296 (491)
Q Consensus 279 ~~~--------------------~~~~------------------------------------------~~~~~~ll~~~ 296 (491)
... +.|+ ..+|..+...|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 110 0111 11111111111
Q ss_pred Hh----c----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 297 GK----R----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 297 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
.+ . .+...|...+...+..... +..+||.|.-. ...|++.-+.-.|-+-.... +.+..+|..+.-.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 11 0 0111233333333322111 33344443322 33344444444333333221 3344455555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH--HH--HCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE--ME--KRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~--~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
..+++.|...|....... +.+...|..........|+.-++..+|.. .. ..|--++...|-+...-....|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 778888888888777642 23455565555555667888888887776 21 33445666666666555566666666
Q ss_pred hhHHHHHHhhhhhh--------hhhhHHHHHHHHHhcCCCcchhhhhHhhhhcC
Q 041882 445 GLVEIRDMRDYSMA--------ISSVMNVVDLLWTYLGMGTCVVIDLFQKREMG 490 (491)
Q Consensus 445 ~~~~~~~m~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~~ 490 (491)
-+...++.....+. |++-..+.-.+...-.++.+.++.....|.+|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555444332222 56656666666666666677777766666655
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.4e-06 Score=72.22 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=108.8
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH----HHHhcC
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYAS-LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ----HYGKAH 125 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 125 (491)
+-+..++..|-..++++... .|...-|.. -...+-+.+.+..|+.+...|... ....+..+. ..-..+
T Consensus 54 YY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~ 126 (459)
T KOG4340|consen 54 YYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEG 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccc
Confidence 44567888999999988774 344444432 245667889999999999988764 222222222 223568
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
++..+..+.++....| +..+.+...-...+.|+++.|++-|....+. |+. ....|+..+ +..+.++++.|++..
T Consensus 127 Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred cCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHH
Confidence 8999999999887543 5555666666677899999999999998876 555 456787655 555778999999999
Q ss_pred HHHHhCCCC
Q 041882 205 DEMLEREVP 213 (491)
Q Consensus 205 ~~~~~~~~~ 213 (491)
.+++++|++
T Consensus 202 SEIieRG~r 210 (459)
T KOG4340|consen 202 SEIIERGIR 210 (459)
T ss_pred HHHHHhhhh
Confidence 999998764
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=3.8e-06 Score=88.82 Aligned_cols=337 Identities=14% Similarity=0.055 Sum_probs=211.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------CcC--HHHHHHHHHHH
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC------VRT--LQSFNSLLDIL 156 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~ 156 (491)
.+...|++..+..+++.+.......++.........+...|++++|...+......-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766553221122233334455556778999999998887644210 111 12223334556
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHH
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVFDEMLER----EV-PPTVVTYNSLIGFLC 227 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~ 227 (491)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 23455566677899999999999887643 11 111234556677788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCC--ChhcHHHHHHHH
Q 041882 228 RTGEMGKAKGLFEDMIKK----GTY--P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG--CKP--QLVNFGVLMSDL 296 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~ 296 (491)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998887653 221 1 22334455566777899999999988775531 112 123344456677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKP-DVVTY-----NILINYLCKEDRAAEAYKVLTEMQIGGCKPNA---ATYRMMVDGFL 367 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 367 (491)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421110 11111 11224445678999999988775542211111 11345666788
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 368 RVEDFEGSLKVLNAMLTS----RHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
..|++++|...++++... |... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988763 3222 23456667788899999999999999988653
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.02 E-value=1.8e-05 Score=72.65 Aligned_cols=408 Identities=12% Similarity=0.115 Sum_probs=218.2
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
...+|..+++.+..+ -.+++...++++..- .+-++..|..-+..-...++++....+|.++...- .+...|...+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 335566677766665 888888888887753 34556677778888888888888888888877653 34566665555
Q ss_pred HHHhc-CCHHHH----HHHHHHh-hhCCCCc-CHHHHHHHHHHH---------HhCCChhhHHHHHHHHHHCCCCCCHHh
Q 041882 120 HYGKA-HLVDKA----IEVFNRM-TSFDCVR-TLQSFNSLLDIL---------VDNDRVDDAKRMFDDADKMGFRPNLIS 183 (491)
Q Consensus 120 ~~~~~-~~~~~a----~~~~~~~-~~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~p~~~~ 183 (491)
.-.+. ++...+ .+.|+-. .+.|..+ +-..|+..+.-+ ..+.+++...++|.++....+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 222221 1222221 2223222 334455554433 233456666777777665422111112
Q ss_pred H------HHHHHH-------HHhcCChHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhcCC--
Q 041882 184 F------NVMIKG-------RLKKGEWEEASRVFDEMLE--REVPPTVVT---------------YNSLIGFLCRTGE-- 231 (491)
Q Consensus 184 ~------~~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~ll~~~~~~~~-- 231 (491)
| ..=++. --+...+..|.++++++.. +|...+..+ |..+|..=-.++-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2 111111 1123345666767666543 232222111 3333332111110
Q ss_pred ------hhHHHHHHHHHHH-cCCCCCHHH-HHHHH----HHHHhcCC-------HhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 232 ------MGKAKGLFEDMIK-KGTYPNAVT-YALLM----EGLCFKGE-------YNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 232 ------~~~a~~~~~~~~~-~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
-....-++++... .+..|+... +...+ +.+...|+ .+++..+++..+..-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111222222221 122222211 11111 11222222 34555555555543323333344333
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 041882 293 MSDLGKRG---KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-NAATYRMMVDGFLR 368 (491)
Q Consensus 293 l~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 368 (491)
...--..- ..+....+++++...-..--..+|..++....+......|..+|.++.+.+..+ .....++++.-++
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 32221112 255566666666554222233457777777778888888888888888876666 5556667776555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCCcchh
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD--LKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~ 446 (491)
.++.+-|.++|+--++. +..+..--...++.+...|+-..|..+|++....++.|| ...|..+|.-=..-|+....+
T Consensus 414 skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 47888888888877665 223344446677778888888888888888887766555 367888888656667666666
Q ss_pred HHHHHHh
Q 041882 447 VEIRDMR 453 (491)
Q Consensus 447 ~~~~~m~ 453 (491)
++-+++.
T Consensus 493 ~lekR~~ 499 (656)
T KOG1914|consen 493 KLEKRRF 499 (656)
T ss_pred HHHHHHH
Confidence 5555544
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.4e-05 Score=78.61 Aligned_cols=394 Identities=15% Similarity=0.198 Sum_probs=223.2
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhH----------HHHHHHHHHhcCC--------
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDA----------VETVLGYIQDFNI-------- 107 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~~~-------- 107 (491)
.++...-+.++..--+.+++...+.| ..++.+++.+...|...++-.+ ...+=+...+++.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 35555566777888888888888888 5677889998888776543322 2222222222210
Q ss_pred --CCC---------HHHHHHHHHHHHhcCCHHHHH-----------HHHHHhhhCCCC--cCHHHHHHHHHHHHhCCChh
Q 041882 108 --RCK---------ETLFISLIQHYGKAHLVDKAI-----------EVFNRMTSFDCV--RTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 108 --~~~---------~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~ 163 (491)
..| ...|....+...+..+.+--. ++.++....+++ .|+......+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 112 233445555555555543322 344555443322 36667777888888888889
Q ss_pred hHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhc---------------------------CChHHHHHHHHHHHhCCCCC
Q 041882 164 DAKRMFDDADKMG--FRPNLISFNVMIKGRLKK---------------------------GEWEEASRVFDEMLEREVPP 214 (491)
Q Consensus 164 ~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~---------------------------~~~~~a~~~~~~~~~~~~~~ 214 (491)
+.+++++++.-.+ +.-+...-|.|+-...+. +-+++|..+|+..--
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~----- 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM----- 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-----
Confidence 9999988876431 111222223333333332 233344444433211
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
+....+.|+. ..+..+.|.++-++. -.+..|+.+.++-.+.|...+|++-|-+ ..|+..|.-+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHH
Confidence 2222222222 123334443333332 1456788888888888888888766543 245667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
...+.|.+++..+++...++..-.|... +.|+-+|++.++..+..+++. .||......+..-|...+.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHH
Confidence 8888999988888888777765544433 567888888888877665542 5777777777788888888877
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhh
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRD 454 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~ 454 (491)
|.-+|.. ...|..|...+...|++..|...-++.. +..+|..+-.+ |..++ .+ .+-.|-.
T Consensus 1213 Akl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcfa-Cvd~~---EF-rlAQiCG 1272 (1666)
T KOG0985|consen 1213 AKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFA-CVDKE---EF-RLAQICG 1272 (1666)
T ss_pred HHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHH-Hhchh---hh-hHHHhcC
Confidence 7766653 3346666666777777777766554443 34556555443 22211 11 1112222
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhcC
Q 041882 455 YSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREMG 490 (491)
Q Consensus 455 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~~ 490 (491)
..+ .-....+..+...|-..|-++++-.+....+|
T Consensus 1273 L~i-ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1273 LNI-IVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred ceE-EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 222 11234455555555555555555544444333
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=8.9e-06 Score=70.29 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=200.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH-HHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ-SFNSLL 153 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll 153 (491)
+..-.--+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.=|.++.+. +||-. +-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 33344556677778888888888888877654 333344444556677788888888888887775 45542 223344
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHH----h------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLI----S------------FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV 217 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 217 (491)
..+.+.|.++.|..-|+.++... |+.. . ....+..+...|+...|+.....+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56778888888888888887763 2211 1 1223345566788888888888888763 34777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHH----HH-
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFG----VL- 292 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l- 292 (491)
.+..-..+|...|++..|+.=++...+..-. ++.++--+-..+...|+...++...++.++. .||...+- .+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 8888888888888888888877777665333 4555556667777888888888888887766 45533211 11
Q ss_pred --------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 041882 293 --------MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVT---YNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-AATYR 360 (491)
Q Consensus 293 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 360 (491)
+......+++.++.+-.+...+..+...... +..+-.++...+++.+|++...+.++. .|+ ..++.
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 1223345667777777777766644422222 334445556677888888888887763 444 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
--..+|.-...++.|+.-|+.+.+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77778887788888888888887753
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=7.5e-08 Score=85.25 Aligned_cols=250 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+..--.|++..++.-.+ ........+......+.+++...|+++.+ +..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33444566666665444 22221122233344455566666655432 23333322 344444444443333333444
Q ss_pred HHHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
.++.-+++........ +.........++...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433222121 2222222223344456666666555431 23444555556666666666666666666
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 208 LEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 5542 12 222223332221 23456666666665443 34455555555556666666666666655554433 2
Q ss_pred CChhcHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKI-EEAKSLLSEMKK 314 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 314 (491)
-+..+...++.+....|+. +.+.+.+.++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3344444444444444544 444455555544
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.4e-07 Score=83.63 Aligned_cols=149 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH----hcC
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG----KRG 300 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~ 300 (491)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 334445555555544331 133444444555555555555555555554331 12 22222222222 122
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 041882 301 KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF-EGSLKVL 379 (491)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~ 379 (491)
.+.+|..+|+++... ..+++.+.+.+..+....|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554433 33355555555555555555555555555544332 22334444444444444444 4444455
Q ss_pred HHHHh
Q 041882 380 NAMLT 384 (491)
Q Consensus 380 ~~~~~ 384 (491)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55444
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.6e-05 Score=76.52 Aligned_cols=378 Identities=11% Similarity=0.080 Sum_probs=212.7
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHh
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN--------IRCKETLFISLIQHYGK 123 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 123 (491)
.-.|+.+.|.+-.+.+.. ...|..+.+.|.+.++++-|.-.+..|.... ...+...-.........
T Consensus 739 vtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 346888888887765443 3589999999999999888887776665321 11111222233334467
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
.|.+++|+.+|++.+.. ..|=..|-..|.|++|.++-+.-.+..+ ..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 78999999999887753 2344556667999999888765333222 24555566666677788888887
Q ss_pred HHHHHhC----------C---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 204 FDEMLER----------E---------VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 204 ~~~~~~~----------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
|++.... . -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 7653211 0 011223333333334445556666666555432 33445555666
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCC
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ--------YKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~ 336 (491)
|+.++|.++-++ .-|....-.+.+.|...|++.+|..+|.+..... -..+...+|..+ .....+
T Consensus 952 Gk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s~~~d 1023 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MSGGSD 1023 (1416)
T ss_pred cCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hcCchh
Confidence 666666665443 2345556677788888888888888877654310 000111122111 011122
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCC--CCCHHhHHHHHHHHHcCCC
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLN--------AMLTSRH--CPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~--~~~~~~~~~l~~~~~~~g~ 406 (491)
.-.|-++|++. |.. +...+..|-+.|.+.+|+++-- +++..++ ..|+...+.-.+.++...+
T Consensus 1024 ~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 33333444432 111 1223445666677666665421 1222222 2467777777888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-hh---hhhhHHHHHHHHHhcCCCcchhhh
Q 041882 407 VDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-MA---ISSVMNVVDLLWTYLGMGTCVVID 482 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~~~ 482 (491)
+++|..++....+ |...++ +|+..+..-.-+..+.|--.+ -. .+....+..++....++|.|-.+.
T Consensus 1096 yekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 9999988876654 344454 466555433333333333111 11 234566777788888888766543
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=2.1e-05 Score=83.33 Aligned_cols=332 Identities=13% Similarity=0.032 Sum_probs=181.8
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--hhhHHHHHHHHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV------PPT--VVTYNSLIGFLC 227 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 227 (491)
....|+++.+..++..+.......+..........+...|+++++..++....+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666655542111111222223334445567888888888877654210 011 112222334556
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--hhcHHHHHHHHHh
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KPQ--LVNFGVLMSDLGK 298 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~ 298 (491)
..|++++|...++.....-...+. ...+.+...+...|+++.|...+.+.....- .+. ...+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887653111121 2334455566778888888888877664311 111 2234455566777
Q ss_pred cCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKR----QYK--P-DVVTYNILINYLCKEDRAAEAYKVLTEMQIG--GCKPN--AATYRMMVDGFL 367 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~ 367 (491)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888887766542 211 1 1223444555666678888888888776542 11121 223344455666
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHH--hH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 041882 368 RVEDFEGSLKVLNAMLTS--RHCPRLE--TF--SCLLVGLLKGGKVDDACFVLEEMEKRKMRFD---LKAWEGLVTDACI 438 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 438 (491)
..|+++.|.+.++.+... ....... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 788888888888777542 1111110 00 1122344557888888888766553211111 1113345555667
Q ss_pred cCCCcchhHHHHHHhhh----hhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 439 GDGNAGGLVEIRDMRDY----SMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 439 ~~~~~~~~~~~~~m~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.|+..++...+.+.... +........+..++..+.+.|+.+++.....+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777665543 22233445667777888888887777665443
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.7e-06 Score=87.44 Aligned_cols=232 Identities=15% Similarity=0.139 Sum_probs=184.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 213 PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYP---NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 213 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
+-+...|-..|....+.++.++|.++.++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 346778888899999999999999999998864 1211 1235667777666777888899999998876 334567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN---AATYRMMVDG 365 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 365 (491)
|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.+.+.. -|. .......++.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 88999999999999999999999988632 47789999999999999999999999998874 343 2344455566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCCc
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL--KAWEGLVTDACIGDGNA 443 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 443 (491)
-.+.|+.+++..+|+..+... +.-...|+.+++.-.++|+.+.++.+|+++...++.|-. ..|..++. |=+..+.+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe-yEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE-YEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH-HHHhcCch
Confidence 678899999999999998863 346789999999999999999999999999999887653 56777887 56666667
Q ss_pred chhHHHHH
Q 041882 444 GGLVEIRD 451 (491)
Q Consensus 444 ~~~~~~~~ 451 (491)
+.+++++.
T Consensus 1688 ~~vE~VKa 1695 (1710)
T KOG1070|consen 1688 KNVEYVKA 1695 (1710)
T ss_pred hhHHHHHH
Confidence 77777643
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4.7e-07 Score=83.39 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+.+.|+..+|.-.|+..+..+ +-+..+|..|.......++-..|+..+.++.+.. +-+..+.-.|...|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777776654 5566677777777777777777777777777765 55666677777777777777777
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHH-----------HHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLL-----------DILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
+.+|++.....++ |..+. ..+.....+....++|-++... +..+|......|--.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777766543211 00000 0001111122233333333222 22234444444444444555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-AVTYALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
.|...|+.++..... |..+||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|...|-.
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555555555443222 4445555555555555555555555555443 221 22233334444555555555444433
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.6e-05 Score=71.67 Aligned_cols=378 Identities=11% Similarity=0.051 Sum_probs=230.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDR 161 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 161 (491)
..+....|+++.|...|...+... +++...|..-..+|+..|++++|++=-.+-.+.. |+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhccc
Confidence 345678899999999999999887 6688899999999999999999988777666653 44 4689999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHhC---CCCCChhhHHHHHHHHHhc------
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE---ASRVFDEMLER---EVPPTVVTYNSLIGFLCRT------ 229 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~------ 229 (491)
+++|+..|.+-++.. +-+...++.+..++.......+ --.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999987763 2345666667666521100000 00011111000 0000111222222221110
Q ss_pred -CChhHHHHHHHHHH--------HcC-------CCC----------------------CHHHHHHHHHHHHhcCCHhHHH
Q 041882 230 -GEMGKAKGLFEDMI--------KKG-------TYP----------------------NAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 230 -~~~~~a~~~~~~~~--------~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
.+.+......-.+. ..| ..| -..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111110 000 011 1122456777888889999999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI-------LINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~ 344 (491)
+-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888775 45555677778888888888887777776665433 2223333 333566678888999888
Q ss_pred HHHHhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041882 345 TEMQIGGCKPNAATY-------------------------RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLV 399 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (491)
.+.......|+...- ..-...+.+.|++..|...|.+++... +.|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 876654333332111 111344556788888888888888875 457788888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 041882 400 GLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTY 472 (491)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~ 472 (491)
+|.+.|.+..|+.-.+...+. .|+ ...|..=..++....+++.+++.+.+-.+.. |++....+.+...+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 888889888888887777765 333 2223222333334445666666665544443 66555544444333
No 102
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=7.1e-06 Score=73.79 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh--hhHH
Q 041882 90 RDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV--DDAK 166 (491)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~ 166 (491)
+..++|+.+.+.+++.+ +-+..+|+.....+...| ++++++..++++...+.+ +..+|+....++.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555443 333344444444444444 345555555555544322 444454444333333331 3445
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 167 RMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
.+++++.+... -+..+|+...-++...|+++++++.++++++.++. |...|+.....+
T Consensus 129 ~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 129 EFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 55555544432 14445555444555555555555555555554433 444444444333
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.3e-06 Score=80.51 Aligned_cols=220 Identities=15% Similarity=0.057 Sum_probs=105.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
.+.|++.+|.-.|+.....++. +..+|..|.......++-..|+..+++..+... -+......|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 4455566665556555554422 555566666666555555556655555555421 13344444445555555555555
Q ss_pred HHHHHHHhCCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 041882 202 RVFDEMLEREVP--------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMI-KKGTYPNAVTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 202 ~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (491)
+.++..+....+ ++...-+. ..+..........++|-++. ..+..+|+.+...|--.|.-.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555554432100 00000000 11111122223333333332 23333455555555555556666666666
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.|+..+... +-|..+||-|...++...+.++|+.-|.+..+..+.- +.+...|.-.|...|.+++|.+.|-+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 666655543 3345556666666666666666666666665542221 122223344555566666666555443
No 104
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=8.3e-06 Score=73.35 Aligned_cols=207 Identities=11% Similarity=0.081 Sum_probs=138.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh--
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND-RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEW-- 197 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-- 197 (491)
+...++.++|+.+.+++...... +..+|+....++...| .+++++..++++.+...+ +..+|+..-..+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 34457788889998888876533 5667777777777777 578999999988876533 455676555555566653
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----hHH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK---GEY----NEA 270 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~~a 270 (491)
++++.+++.+.+.+.. |..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |.. +..
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6778888888877654 8888888888888889999999999999887655 566666655544443 222 345
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKR----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK 333 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (491)
..+....+... +-+...|+.+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55555555543 44556666666666552 2334566666665554433 55666666666654
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.0001 Score=72.77 Aligned_cols=315 Identities=15% Similarity=0.150 Sum_probs=184.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
.++++...+=+.+-+++++++.-.+ ...+...-+.|+-...+. +...+.+..+++...+. |+ +...+...
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~ 1061 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIEN 1061 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhh
Confidence 4556666677777777777765322 222222333344333333 44555555555554331 11 23344555
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
+-+++|..+|++.. .+..+.+.|+.- -+..+.|.++-++.. ....|..+..+-.+.|.+.+|.+-|
T Consensus 1062 ~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 66777777776543 244444444442 245556655554432 3456777888888888887777666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
-+. -|+..|..++....+.|.+++-.+++....+....|... +.++-+|++.++..+.++++. -|
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 432 166678888888888888888888887777765555544 467777888887776655432 46
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+......+.+-|...+.++.|.-+|..+. -|..|...+...|++..|.+.-++. .+..||..+-.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCF 1257 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHH
Confidence 66666667777777777777766665432 3666667777777777776655442 34556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|...+.+.-| +|...++.....-...++..|-..|-+++.+.+++...
T Consensus 1258 aCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 66655444322 22222233344445555666666666666655555443
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=6.6e-05 Score=65.09 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=216.6
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKET-LFISLIQHYGKAH 125 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 125 (491)
+-+.+...|++..|+.-|....+.+ +.+-.++-.-...|...|+-..|+.=+..+.+. .||-. .-..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 4456777899999999999888633 333333444456677888888888888888876 44432 2334455678999
Q ss_pred CHHHHHHHHHHhhhCCCCcC--HHH------------HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRT--LQS------------FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
.+++|..=|+.+...+...+ ... ....+..+...|+...|+.....+++.. +.|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 99999999999987653211 111 2233455667899999999999998864 45888899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHH---------H
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT----YALL---------M 258 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------l 258 (491)
...|++..|+.=++..-+..-. ++.++.-+-..+...|+.+.++...++.++. .||... |..+ +
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999887776655333 6777778888999999999999999999875 344322 2111 1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQL---VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
......++|.++.+..+...+....... ..+..+-.++...+++.+|+..-.++...... |..++..-..+|.-..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhH
Confidence 2335667888888888887776422122 23445666777788999999999998876433 5888888899999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 041882 336 RAAEAYKVLTEMQIGG 351 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~ 351 (491)
+++.|+.-|+...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999988754
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=8.4e-06 Score=82.72 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPN---LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
..|-..|......++.++|.+++++.+.. ++.-. ...|.++++.-...|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 44555555555555555555555544432 11111 1233444444444444444555555544431 012334445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ---LVNFGVLMSDLGKR 299 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 299 (491)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|. .....-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 55555555555555555555443 1123344445555555555545555555444433 121 11222223333344
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
|+.+.+..+|+......++ ....|+.+++.-.++|+.+.+..+|++....++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555544444333 3444555555555555555555555555444433
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=7.4e-06 Score=77.81 Aligned_cols=230 Identities=15% Similarity=0.135 Sum_probs=169.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
..+...+...|-...|..+|+++. .|..++.+|...|+.++|..+..+..+ -+||+..|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 456667778888888888887754 466788888888988888888888777 367888888877776666
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
.-+++|.++.+..... .-..+.......++++++.+.|+.-.+.++- ...+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677787777654432 1112222233468888999888887776544 6678888888888889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM-R 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~ 423 (491)
....... +-+...|+.+-.+|.+.++-.+|...+.+..+.+ ..+..+|...+....+.|.+++|.+.+.++.+... .
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 8887642 4445689999999999999999999999998876 45667778888888899999999999988874321 1
Q ss_pred CCHHHHHHHHHH
Q 041882 424 FDLKAWEGLVTD 435 (491)
Q Consensus 424 ~~~~~~~~ll~~ 435 (491)
-|......++..
T Consensus 621 ~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 621 KDDEVLLIIVRT 632 (777)
T ss_pred ccchhhHHHHHH
Confidence 144444445444
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.4e-05 Score=76.90 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-C--------
Q 041882 108 RCKETLFISLIQH--YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-G-------- 176 (491)
Q Consensus 108 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-------- 176 (491)
..|+.+-.++++. |...|+.+.|.+-.+-++ +..+|..+.+.|.+.++.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 4566666666654 566788888877766554 4457888888888877777665555444321 0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 177 FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL 256 (491)
Q Consensus 177 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (491)
-.|+ .+=..+.-.....|.+++|+.+|++..+. ..|=..|...|.+++|+++-+.=-... =..||..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1122 22222333456778999999999887763 345556777899999988876533222 2346666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 336 (491)
...-+...++.+.|++.|++... +-...+..|. .++...+.+.+.+. |...|.--.+.+-..|+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccc
Confidence 77777788888888888875431 2222222221 12333333444433 45666666677777899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
.+.|+.+|....+ |-++++..+-.|+.++|.++-++ . -|......+.+.|-..|++.+|..+|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999887664 55667777778999998887654 2 2455556688889999999999988887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 417 MEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 417 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
.. +|...|. +|+.++..+.+.-+--
T Consensus 993 Aq---------afsnAIR-lcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 993 AQ---------AFSNAIR-LCKENDMKDRLANLAL 1017 (1416)
T ss_pred HH---------HHHHHHH-HHHhcCHHHHHHHHHh
Confidence 65 3445565 5777776666555433
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=2.2e-05 Score=78.90 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLIS-FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
+...+..|+..+...+++++|.++.+...+. .|+... |-.+...+...++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5677888888888888888888888866654 344332 22222245555554443333 333
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChH
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
.......++..+..++..+...+ -+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33334444544444444554432 244567777888888888888888888888776 56677777777777777 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
+|++++.+.... |...+++..+.++|.++.+.. |+ +++.-..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHH
Confidence 888887776654 555567777777777777642 22 2222333334444
Q ss_pred hC-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhh
Q 041882 384 TS-RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSV 462 (491)
Q Consensus 384 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~ 462 (491)
.. |..--..++..+-..|-..++|+++..+++.+.+..-. |......++.+|...-.....++++.+|...+-.+..+
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~ 293 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPV 293 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccH
Confidence 33 32334456666777788888999999999999976433 56667777775554444556777777777654333333
Q ss_pred HHHHHHH--HHhcCCCcc
Q 041882 463 MNVVDLL--WTYLGMGTC 478 (491)
Q Consensus 463 ~~~~~l~--~~~~~~g~~ 478 (491)
.....-+ ...++.|.+
T Consensus 294 ~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 294 KDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHHHHeeecCCCE
Confidence 3333333 334555543
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=3.6e-05 Score=73.28 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=78.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
+.+......|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|+++|-+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444556677777777777776653 233456667777777777777777775432 244566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
++|.++-.+... -......|..-..-.-.+|++.+|.++|-.+-. |+. .|..|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777666542 122333444444445566666666655432211 221 234455555555555554443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2e-05 Score=75.01 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=146.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
..+...+...|-..+|..+|+++. .|..++.+|+..|+..+|..+..+..++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445566667777778887777643 3566777788888888888887777663 56777777777776666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
.-+++|.++.+..... .-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777665332 11122222234677777777777666553 344556666666777777888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 310 SEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777765444 56678888888888888888888888877765 444455656666667778888888887777654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.9e-05 Score=66.00 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=118.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
-|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|+..|++..... ++|..+|+.+.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 34444 555566666777777766666644332 4566677778888888888888888888887765 45788888888
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.+|.+.|+++.|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 8888888888888888887776322 4556677777777788888888888887776433 6667777777788888888
Q ss_pred HHHHHHHHHH
Q 041882 234 KAKGLFEDMI 243 (491)
Q Consensus 234 ~a~~~~~~~~ 243 (491)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 8877765543
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=1e-05 Score=70.60 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH--HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL--QSFNS 151 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 151 (491)
..+..+...+...|+++.|...++.+.... +.+. ..+..+...+...|++++|+..++++.+....... .++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344444555555555555555555555443 1111 33444555555556666666665555443211010 12333
Q ss_pred HHHHHHhC--------CChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 152 LLDILVDN--------DRVDDAKRMFDDADKMGFRPNLI-SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 152 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
+..++... |+++.|.+.|+.+.... |+.. .+..+... .. ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHHHH
Confidence 33333332 45566666666665542 2221 11111100 00 000 00 0011234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGT--YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566777777777777777766522 123456667777777777777777777766554
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.8e-05 Score=66.26 Aligned_cols=147 Identities=9% Similarity=0.082 Sum_probs=100.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAA 338 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 338 (491)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+.++. +...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 456677777766444322211 11 0 111255667777777777776555 7788888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGF-LRVED--FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888887754 44566666666653 56666 488888888888864 2356777778888888888888888888
Q ss_pred HHHHC
Q 041882 416 EMEKR 420 (491)
Q Consensus 416 ~~~~~ 420 (491)
++.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 88765
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=0.00014 Score=69.56 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK 234 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 234 (491)
+......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455566666665555442 12334555555666666666666665331 224445556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 235 AKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
|.++-++.. |.......|-+-..-+-..|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++.++-.-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 666555442 233334444444444555566666555543222 233 234555566655555555443321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 315 RQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKV 378 (491)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 378 (491)
. .-..+...+..-|-..|+...|..-|-+.. -|.+.++.|-..+-|+.|.++
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 1 112233344445555566666665554332 133444455555555555544
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=1.1e-05 Score=70.23 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=121.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh----
Q 041882 214 PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV---- 287 (491)
Q Consensus 214 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 287 (491)
.....+..+...+...|++++|...|+++...... | ...++..+..++...|++++|...++.+.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 35667777888888999999999999988775322 1 12456777788888999999999999988763 3221
Q ss_pred cHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 288 NFGVLMSDLGKR--------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 288 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
++..+..++... |+.+.|.+.++.+.+..+. +...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 344444445443 6677788888887776433 2222222211110 0000 00 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRH--CPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
..+...+.+.|++++|...++.+.+... +.....+..+..++...|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2345567888999999999988887621 123567788888899999999999988888754
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.3e-08 Score=54.15 Aligned_cols=32 Identities=41% Similarity=0.800 Sum_probs=14.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 176 GFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 176 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=6.5e-05 Score=75.63 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=110.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++...+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 345677888888888888888888888766654 33344444444466666665544433 233
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.......++..+..+...+...+ -+...+..+..+|-+.|+.+++..+++++.+.... |+.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 33344445544444555555432 23446677778888888888888888888887633 777888888888888 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+|.+++.+.... +...+++..+..++..+...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888887777654 44445555666666655554
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.59 E-value=0.00012 Score=72.21 Aligned_cols=421 Identities=12% Similarity=0.026 Sum_probs=226.5
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
++...+...|.+.|+...+.+ ..+......+...++...+++.|..+.-..-+.. ...-..-|....-.|.+.++...
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 344457778888998888765 5677788889999999999999998843333221 00111223345556778889999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHH--HHHhcCChHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIK--GRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~ 207 (491)
|+.-|+.....++. |...|..+..+|...|++..|+++|.+.... .|+. +|..... .-+..|.+.+++..+...
T Consensus 581 aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999988887644 8889999999999999999999999887654 3443 2322221 234456666666666554
Q ss_pred HhC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHH----------------------------------------
Q 041882 208 LER------EVPPTVVTYNSLIGFLCRTGEMGKAKGLFED---------------------------------------- 241 (491)
Q Consensus 208 ~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------------------------------------- 241 (491)
... +..--..++..+...+.-.|-..++..++++
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 332 0000111111111111111111111111111
Q ss_pred ---------HHHcCCCC--------------------CHHHHHHHHHHHHh-------cC-CHhHHHHHHHHHHHcCCCC
Q 041882 242 ---------MIKKGTYP--------------------NAVTYALLMEGLCF-------KG-EYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 242 ---------~~~~~~~~--------------------~~~~~~~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~ 284 (491)
....+..+ +..+|..+...|.+ .+ +...|+..++..++.. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-AN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hc
Confidence 11111111 11112222221111 11 1124455555544432 22
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+..+|+.| ......|++.-+...|-.-....+. ...+|..+...+.+..+++.|...|....... +.|...|.....
T Consensus 816 n~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Al 892 (1238)
T KOG1127|consen 816 NEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEAL 892 (1238)
T ss_pred cHHHHHHH-HHhhccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHH
Confidence 33344443 3335556677766666665555443 66778878878888899999999998877542 344455555444
Q ss_pred HHHhcCCHHHHHHHHHHH--HhC--CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH----------HHHCCCCCCHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAM--LTS--RHCPRLETFSCLLVGLLKGGKVDDACFVLEE----------MEKRKMRFDLKAWE 430 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----------~~~~~~~~~~~~~~ 430 (491)
.....|+.-+...+|..- ... |-.++..-|-........+|+.++-+.-.+. ... |..-+...|.
T Consensus 893 i~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~ 971 (1238)
T KOG1127|consen 893 IPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYA 971 (1238)
T ss_pred hHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHH
Confidence 445667777777777652 221 3234444444444445556665544433332 222 2222344555
Q ss_pred HHHHHHHhcCCCcchhHHHHHHh---hhhhhhh-hhHHHHHHHHHhcCCCcchhh
Q 041882 431 GLVTDACIGDGNAGGLVEIRDMR---DYSMAIS-SVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 431 ~ll~~~~~~~~~~~~~~~~~~m~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~~ 481 (491)
+.....-+.+.+.+++....+.+ +...+.+ +...--..+..+...|.++.+
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A 1026 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESA 1026 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhH
Confidence 55554445555555555544433 2222222 222444556666677766533
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=7.8e-08 Score=54.03 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=19.1
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=2.1e-05 Score=65.82 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 115 ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 115 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
..+-..+...|+-+....+........ ..+....+.++....+.|++..|+..+.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444444455555554444433322 1233444445555555555555555555554432 34455555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 041882 195 GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMM 274 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (491)
|+++.|..-|.+..+.... +....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|+++.|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555443222 3444555555555555555555555555444222 4444444444555555555555444
Q ss_pred H
Q 041882 275 F 275 (491)
Q Consensus 275 ~ 275 (491)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=5.6e-05 Score=75.21 Aligned_cols=180 Identities=9% Similarity=0.026 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 248 YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNIL 327 (491)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (491)
..+...+..|.....+.|.+++|..+++...+.. +-+......+..++.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3357778888888888888888888888888763 333455666777788888888888888888887665 67777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKV 407 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (491)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 888888888888888888888732 4446778888888888888888888888887762 24445555443 344
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH
Q 041882 408 DDACFVLEEMEKR----KMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 408 ~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~ 437 (491)
..-..+++++.-. |..........+|.-+-
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 4455566665532 22333444555554333
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=2.6e-05 Score=65.31 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH-HhcCC--hHHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL-GKRGK--IEEA 305 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 305 (491)
.++.+++...++...+.... +...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554322 55666666666666666666666666666553 33444455555442 44454 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
.+++++..+.++. +...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666554 5566666666666666666666666666654
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1.2e-05 Score=63.63 Aligned_cols=109 Identities=11% Similarity=-0.004 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.++++..+. ++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++...
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555554 33335556677777888888888888877654 456677777777888888888888888888875
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+ +.+...+..+..++...|++++|...|+...+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 346677777888888888888888888888764
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00018 Score=60.41 Aligned_cols=248 Identities=14% Similarity=0.106 Sum_probs=120.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
-+.-.|+|..+...-....... -+...-.-+-++|...|.+...+. ++.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3344455555544443333221 233333344455555555443222 222221 2233333333333333333333
Q ss_pred HH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 165 AK-RMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 165 a~-~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.+ ++.+.+.......+......-...|++.+++++|++...... +......=...+.+..+++.|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 233333333333333333334445666677777776665511 22233333344455566677777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 244 KKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
+.. +..|.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+..+
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 541 44455555555433 34566677777776653 2566666666666667777777777777777666555
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 041882 320 DVVTYNILINYLCKEDRA-AEAYKVLTEMQI 349 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 349 (491)
++.+...++-.-...|.. +...+.+.++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 444444444433334433 334455555544
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00014 Score=61.02 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=134.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
+-+.-.|.+..++..-....... -+...-..+.++|...|.+..... ++.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444566666665554443321 233344445566776666554332 222221 223333333333333334433
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 234 KAK-GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 234 ~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
.-+ ++.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+++-|...++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444443333333333334455677777887777766521 1222222334455666777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 313 KKRQYKPDVVTYNILINYLCK----EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388 (491)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (491)
... -+..+.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+....++...|++++|..+++.++....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 764 255666666666654 24567777777777653 467777777777777777777777777777777632
Q ss_pred CCHHhHHHHHHHHHcCCCHHH-HHHHHHHHHH
Q 041882 389 PRLETFSCLLVGLLKGGKVDD-ACFVLEEMEK 419 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 419 (491)
.++.+...++.+-...|...+ ..+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 345555555555555555433 3444555543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=0.00014 Score=72.42 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=140.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
...++..+..|.....+.|.+++|..+++...+.... +......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4447889999999999999999999999999986333 56677788899999999999999999999885 445666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+..++.+.|++++|..+|+++...+.. +..++..+...+...|+.++|...|+...+.. .+....|+..+ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 888899999999999999999985443 67889999999999999999999999998763 45556655543 23
Q ss_pred HHHHHHHHHHHHhCC----CCCCHHhHHHHHHHHHcC
Q 041882 372 FEGSLKVLNAMLTSR----HCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 404 (491)
...-...++++.-.+ .+..+......+.-|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344455566654432 222344455555555543
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0012 Score=61.08 Aligned_cols=410 Identities=12% Similarity=0.089 Sum_probs=250.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+-|..+|..|++-+..+ ..+++.+.++.+...- +..+..|..-+..-.+.++++..+.+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 77899999999987666 9999999999998764 677888999999999999999999999998764 3467778777
Q ss_pred HHHHHhC-CChhh----HHHHHHHHH-HCCCCCC-HHhHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 153 LDILVDN-DRVDD----AKRMFDDAD-KMGFRPN-LISFNVMIKG---------RLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 153 l~~~~~~-~~~~~----a~~~~~~~~-~~~~~p~-~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
+.--.+. +.... ..+.|+-.. +.|+.+- ...|+..+.. +....+++...++++++...-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7655443 33222 233344333 3353332 2234444432 34445677788888887764222111
Q ss_pred hhHH------HHHHH-------HHhcCChhHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHHHHhcCC
Q 041882 217 VTYN------SLIGF-------LCRTGEMGKAKGLFEDMIK--KGTYPNAV---------------TYALLMEGLCFKGE 266 (491)
Q Consensus 217 ~~~~------~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 266 (491)
..|+ .=|+. --+...+..|.++++++.. .|...+.. .|..+|.- .+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 1221 11111 1133456678888877754 23321111 13333321 11111
Q ss_pred Hh---------HHHHHHHHHH-HcCCCCChhcH-H----HHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHH
Q 041882 267 YN---------EAKKMMFDMA-YRGCKPQLVNF-G----VLMSDLGKRGK-------IEEAKSLLSEMKKRQYKPDVVTY 324 (491)
Q Consensus 267 ~~---------~a~~~~~~~~-~~~~~~~~~~~-~----~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 324 (491)
.. ...-.+++.. -.+..|+.... . ..-+.+...|+ -+++..+++...+.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111122211 12223322111 0 11122333343 34566666665543222244444
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHH
Q 041882 325 NILINYLCKED---RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP-RLETFSCLLVG 400 (491)
Q Consensus 325 ~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 400 (491)
..+.+.--..- ..+.....+.++......--..+|...++.-.+....+.|..+|.++.+.+..+ ++.++++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44443221111 255566666666554222223467788888888899999999999999986666 67778888877
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhh-hhHHHHHHHHHhcCCCcch
Q 041882 401 LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAIS-SVMNVVDLLWTYLGMGTCV 479 (491)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 479 (491)
+| +++.+-|.++|+-=.+. ...++..-...+.-+...++...+-.++++....++.|+ +...++.+...-...|+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 76 57889999999975543 444667777788878888888888888898887766654 6788889999999999999
Q ss_pred hhhhHhhhhc
Q 041882 480 VIDLFQKREM 489 (491)
Q Consensus 480 ~~~~~~k~~~ 489 (491)
.+..+-||+.
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 8888877753
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=2.7e-05 Score=61.52 Aligned_cols=88 Identities=7% Similarity=-0.136 Sum_probs=36.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
++...|++++|...|+......+. +...|..+..++...|++++|...|+...+.. +.+...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 333444444444444444433222 33444444444444444444444444444322 2233344444444444444444
Q ss_pred HHHHHHHHHh
Q 041882 375 SLKVLNAMLT 384 (491)
Q Consensus 375 a~~~~~~~~~ 384 (491)
|...|+..++
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00055 Score=57.09 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred cCChHHHHHHHHHhhh---CC-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 54 IRDPDEALSLFHRHHQ---MG-SKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..++++.++++..+.. .| ..++.. .|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3567777777776652 22 333333 34555566667777777777777776653 333333222222334457777
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
+|+++++.+.+.+ +.|..++-.-+.+.-..|..-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777766 335666666666666667666777666666554 34577777777777777777777777777776
Q ss_pred hCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 041882 209 EREVPPTVVTYNSLIGFLCRTG---EMGKAKGLFEDMIKK 245 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 245 (491)
-..+. +...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65322 4445555555444333 344566666666664
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=2.8e-05 Score=61.10 Aligned_cols=98 Identities=12% Similarity=0.224 Sum_probs=61.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++....+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555556666666777776666666654 4456666666666666666666666666665554 2245566666666
Q ss_pred HHhCCChhhHHHHHHHHHHC
Q 041882 156 LVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (491)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00032 Score=64.10 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=70.8
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|++++|+..+..+.... +-|........+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 344555555555555555442 223333344455555555556666555555554222 244444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 341 YKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+.++++..... +-|+..|..|.++|...|+..++..... ..|...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 55555554432 4455555555555555555544443322 2233445555555555555543
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00086 Score=55.99 Aligned_cols=186 Identities=17% Similarity=0.084 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 041882 196 EWEEASRVFDEMLER---E-VPPTVV-TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA 270 (491)
Q Consensus 196 ~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (491)
+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.+. ++-+..+-..-.--+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555444331 2 223332 2333444555566667777777766654 221222222222223456677777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
+++++.+++.+ +.|..++--=+.+.-..|+.-+|++-+....+.- ..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777777665 4445555444444555666666666666666552 337777777777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 041882 351 GCKPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTS 385 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 385 (491)
. |.++..+..+...+.-.| +.+.+.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 444445555555443333 455677777777764
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=5.7e-05 Score=59.27 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++..+.+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444445555555555555555554432 3344455555555555555666665555555542 223444555555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56666666666655554
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=7.8e-05 Score=68.57 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041882 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV 369 (491)
Q Consensus 290 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (491)
..|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..... +-+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666677777777766653 22 33445566666666666666666666432 33444455455556666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
++++.|..+.+++.+.. +.+..+|..|..+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776642 2244567777777777777777776666654
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0017 Score=59.60 Aligned_cols=143 Identities=19% Similarity=0.105 Sum_probs=118.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhc
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKR 299 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 299 (491)
-....+...|++++|+..++.++.. .+-|+.........+.+.++.++|.+.++.+... .|+ ....-.+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3344566789999999999998876 3346677777788899999999999999999987 455 55556778899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
|++.+|+.+++........ |+..|..|.++|...|+..++.....+ .+...|+++.|...+
T Consensus 388 g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 9999999999999887665 899999999999999999888776554 455679999999998
Q ss_pred HHHHhC
Q 041882 380 NAMLTS 385 (491)
Q Consensus 380 ~~~~~~ 385 (491)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 888876
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.0093 Score=58.94 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKL--ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+....+++..|++......+. .|+. .|..++.++ .+.|+.++|..+++.....+. .|..+...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 445556677777776666653 2332 334444333 356677777766666665552 3666666677777777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
++|..+|++..... |+......+..+|.+.+++.
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHH
Confidence 77777777766543 45555556666666655543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=9.9e-05 Score=67.89 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
...|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..... +-+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3344445555556666666666655543 22 33335555555555556666655555432 2234444444455555
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.++++.|+++.+++.+... -+-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666666666555421 134456666666666666666665555543
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.011 Score=58.54 Aligned_cols=412 Identities=11% Similarity=0.039 Sum_probs=235.2
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+.+.|+.++|..+++.....+ ..|..+...+-..|...+..++|..+|+...... |+......+..+|++.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999998877655 3377788998899999999999999999998874 5588888888889998887654
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhC-CC---------hhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDN-DR---------VDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~---------~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
.+.--++-+. .+.+...+=++++.+... .. ..-|.+.++.+.+.+ .--+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 3333232221 122343433444444432 11 224555666666553 21122233344455667888999
Q ss_pred HHHHH-HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 041882 200 ASRVF-DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC---------------- 262 (491)
Q Consensus 200 a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------------- 262 (491)
|..++ ....+.-...+...-+.-+..+...+++.+..++-.++...|.. | |...+..+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 99999 34444434445556667788888999999999999999988654 2 333222211
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 263 FKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK---RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 339 (491)
..+..+...+...+.... .....|-+-+.++.+ -|+.+++...|-+- .|-+| .|..=+..|...=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHH
Confidence 111122222222222211 122334444444444 36666655444332 22222 33333444444445555
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---hCC------CCCCHH------
Q 041882 340 AYKVLTEMQIGGCKPNAA-------TYRMMVDGFLRVED-----FEGSLKVLNAML---TSR------HCPRLE------ 392 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~-----~~~a~~~~~~~~---~~~------~~~~~~------ 392 (491)
-..++...... .++.. .+...+..-...|. .+....++.++. ++| .-|+..
T Consensus 357 ~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 56666655432 22222 12233333233342 333444444333 223 223332
Q ss_pred ---hHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHH
Q 041882 393 ---TFSCLLVGLLKGGKVDD---ACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVV 466 (491)
Q Consensus 393 ---~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 466 (491)
+.+.+++.+.+.++... |+-+++.-.... .-|..+--.+|..|+..|....+.+.++.|--..++.++...+.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~ 513 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI 513 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH
Confidence 34667788888888763 444444444321 22445555688899999999999999999988888877654443
Q ss_pred HHHHHhcCCCcchhhhh
Q 041882 467 DLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 467 ~l~~~~~~~g~~~~~~~ 483 (491)
. ..+...|+|..+--
T Consensus 514 ~--~~~~t~g~~~~~s~ 528 (932)
T KOG2053|consen 514 F--RRAETSGRSSFASN 528 (932)
T ss_pred H--HHHHhcccchhHHH
Confidence 2 23334456655443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00025 Score=56.32 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA--ATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~ 364 (491)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......++. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666776666533311 122333445666677777777777777665422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
.+...|++++|+..++...... .....+....++|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775533222 23445556667777777777777777653
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=8.7e-06 Score=46.44 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=25.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888887777776
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00036 Score=55.36 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 041882 119 QHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~ 139 (491)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 334444444444444444444
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9.9e-06 Score=45.84 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (491)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=1.2e-05 Score=45.80 Aligned_cols=33 Identities=42% Similarity=0.856 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN 250 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (491)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.00 E-value=0.0002 Score=66.31 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 211 EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 211 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
+.+.+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777777777777777788877777655 2222234456788888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777776666666666666555544
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.00 E-value=0.00016 Score=66.87 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555555555555443 11111223345555555555555555555555555555555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555554444444444444444333
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.4e-05 Score=45.24 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (491)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444443
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.86 E-value=0.0056 Score=53.10 Aligned_cols=56 Identities=14% Similarity=-0.011 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcCHHH---HHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFDCVRTLQS---FNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
..+...|++++|++.|+++....+. +... .-.++.++.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455566666665555544321 1111 123445555555666666666555554
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00041 Score=50.13 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041882 362 MVDGFLRVEDFEGSLKVLNAMLTSRH-CPRLETFSCLLVGLLKGG--------KVDDACFVLEEMEKRKMRFDLKAWEGL 432 (491)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (491)
.|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 566666666666655431 234556777777777778888888877
Q ss_pred HHHHHh
Q 041882 433 VTDACI 438 (491)
Q Consensus 433 l~~~~~ 438 (491)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776543
No 151
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.039 Score=53.69 Aligned_cols=343 Identities=9% Similarity=0.093 Sum_probs=176.6
Q ss_pred hCCCCCCHHhHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHH-HHhhhC
Q 041882 69 QMGSKHSYPSYAS-----LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV--DKAIEVF-NRMTSF 140 (491)
Q Consensus 69 ~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~-~~~~~~ 140 (491)
..|++.+..-|.. ++.-+...+.+..|.++-..+......- ..+|......+.+..+. +++++.. +++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666666644 4566667788888888887776433222 56677777776665322 2222222 222221
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 141 DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF----RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
. .....|..+.+.....|+++-|..+++.=...+- -.+..-+...+.-+.+.|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 1 2345677777777788888888887764222210 012223444555666677777776666665543 111
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-H----HcCCCCChhcHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM-A----YRGCKPQLVNFGV 291 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~----~~~~~~~~~~~~~ 291 (491)
..+...+ .+...|..+|.+..+.. |..+ +-..|....+...+-.+.-+- . ..+..|+ ...
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 1222111 23445555555554421 1111 111222222222211111110 0 0111222 222
Q ss_pred HHHHHHhcCC----------hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 292 LMSDLGKRGK----------IEEAKSLLSEMKKR-QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 292 ll~~~~~~~~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
...++.+... ...-..+.+.+... +..-...+.+--+.-+...|+..+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 2233333222 11112222222221 222233445555666677777777777777665 57777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGD 440 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 440 (491)
.-+.+++..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++-+.... . -...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhc
Confidence 77777777777776655543321 2455667777788888888888877766532 1 2344566667
Q ss_pred CCcchhHHHHH
Q 041882 441 GNAGGLVEIRD 451 (491)
Q Consensus 441 ~~~~~~~~~~~ 451 (491)
+..+|++..-+
T Consensus 785 ~~~eAad~A~~ 795 (829)
T KOG2280|consen 785 DVKEAADLAAE 795 (829)
T ss_pred cHHHHHHHHHH
Confidence 77677666543
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00039 Score=50.25 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=34.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGC-KPQLVNFGVLMSDLGKRG--------KIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-....+|+.|...+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333555555555555555555 455555555554444321 12234445555555555555555555554443
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.027 Score=50.80 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=95.9
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
.+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..++|++..++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555666777888888877766553 2 5888899999999999999887775432 23457788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchh
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 446 (491)
...|+..+|..+..++ + +..-+..|.+.|++.+|.+.--+.. |...+..+.. .|..++....+
T Consensus 248 ~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~-~~~~~~~~~~~ 310 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK-RCPGNNDQLIA 310 (319)
T ss_pred HHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH-HCCCCChHHHH
Confidence 9999999988887761 1 2456777889999999887655444 4455555554 23333333333
Q ss_pred HHHHHHh
Q 041882 447 VEIRDMR 453 (491)
Q Consensus 447 ~~~~~m~ 453 (491)
..++.|.
T Consensus 311 ~~i~~~~ 317 (319)
T PF04840_consen 311 DKIEQML 317 (319)
T ss_pred HHHHHHH
Confidence 4556554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00071 Score=48.85 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555556666666666666665532 2233455555566666666666666666666543 2233455666666666
Q ss_pred CCCHHHHHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEMEK 419 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~ 419 (491)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666553
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.0017 Score=49.44 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGC--KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--PRLETFSCLL 398 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 398 (491)
++..++..+.+.|++++|.+.+..+....- ......+..+..++...|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777766654320 011234445566666677777777777766654211 1234455666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 041882 399 VGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666777777777777776654
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.0006 Score=49.26 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
..+...|+++.|...++.+.+.. +.+...+..+...+...+++++|.+.|+....... .+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHH
Confidence 33334444444444444443332 22223333344444444444444444444333221 12233333444444444444
Q ss_pred hHHHHHHHH
Q 041882 164 DAKRMFDDA 172 (491)
Q Consensus 164 ~a~~~~~~~ 172 (491)
.|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444333
No 157
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.019 Score=48.46 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-----
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI----- 188 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 188 (491)
-+.++....-.|.+.-...++.++.+.+.+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555556666666666666665555566666666666666677666666666655443333433333332
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 189 KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
..+.-.+++..|...++++...+.. |+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455666666666666655332 4444444444444456666666666666654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.0013 Score=50.04 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=7.1
Q ss_pred HHHHHhCCChhhHHHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDD 171 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~ 171 (491)
..++...|+++.|...|+.
T Consensus 46 ~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHhhccHHHHHHHHHH
Confidence 3333333333333333333
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=6.3e-05 Score=41.35 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=19.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56667777777777777777777776655
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.00091 Score=61.85 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=45.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+...|+++.|.+.|+.+.+.. +.+...+..+..++...|++++|+..+++....+. .+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3344455555555555555444 33444555555555555555555555555544432 244455555555555555555
Q ss_pred HHHHHHHHHHC
Q 041882 165 AKRMFDDADKM 175 (491)
Q Consensus 165 a~~~~~~~~~~ 175 (491)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.0014 Score=60.61 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|+++.|+..|+++++.. +.+...|..+..++.+.|++++|...++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344555667777777777766654 3455566666666667777777777777766665 44566666666667777777
Q ss_pred HHHHHHHHHhhhCC
Q 041882 128 DKAIEVFNRMTSFD 141 (491)
Q Consensus 128 ~~a~~~~~~~~~~~ 141 (491)
++|+..|++....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766654
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.017 Score=50.06 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTY---NSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+...|++++|.+.|+.+...... +.... -.++.++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455666666666555553221 11111 23344555566666666666655554
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=0.0001 Score=52.19 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHhhhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSK-HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIE 132 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (491)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|++++|.++++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35556666666665543321 1233333455555566666666666655 2222 1122333344555555666666665
Q ss_pred HHHH
Q 041882 133 VFNR 136 (491)
Q Consensus 133 ~~~~ 136 (491)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=7.2e-05 Score=41.13 Aligned_cols=28 Identities=39% Similarity=0.749 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0016 Score=58.01 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGF-LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGL 261 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (491)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665432 1233344443333 22244555566666666554 333555555556666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQ---LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
...++.+.|..+|++.... +.++ ...|...++.-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665544 1111 125555555555666666666666555553
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00014 Score=51.51 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCK-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFV 413 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 413 (491)
|+++.|+.+++++.+..-. ++...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543210 1223333345555556666666665555 22111 1223333345555566666666655
Q ss_pred HHH
Q 041882 414 LEE 416 (491)
Q Consensus 414 ~~~ 416 (491)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0013 Score=51.35 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
...+...|++++|.++|+.+.... +.+..-|-.|.-++-..|++++|+..|......++ .++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 334445555555555555555544 33444445555555555555555555555544442 2445555555555555555
Q ss_pred hhHHHHHHHHHH
Q 041882 163 DDAKRMFDDADK 174 (491)
Q Consensus 163 ~~a~~~~~~~~~ 174 (491)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0015 Score=58.08 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
+|..++..+-+.+..+.|+.+|....+.+ ..+..+|...... +...++.+.|..+|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554322 2222333332222 11123344455555544432 122444444444444
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
...++.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555544433 1111 2444444444444444444444444443
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.63 E-value=0.0022 Score=50.13 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 115 ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 115 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
-.+...+...|++++|..+|+-+...++. +..-|-.|..++-..|++.+|+..|.......+ -|...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 34444455666677776666666665532 555666666666666666666666666665542 2455566666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 041882 195 GEWEEASRVFDEMLER 210 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~ 210 (491)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0018 Score=52.97 Aligned_cols=81 Identities=10% Similarity=-0.037 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRC--KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
...+..+...+...|++++|...++........+ ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777766543221 22456666777777777777777777766543 22344455555
Q ss_pred HHHH
Q 041882 154 DILV 157 (491)
Q Consensus 154 ~~~~ 157 (491)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.033 Score=50.28 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=98.5
Q ss_pred CCHHhHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 041882 179 PNLISFNVMI-KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTY--- 254 (491)
Q Consensus 179 p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 254 (491)
|...++..+- .++.-.|++++|.++--...+.+.. +......-..++.-.++.+.|...|++.+..+. +...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhH
Confidence 3334444332 3455678888888777666665322 333322233345567788888888888776532 22111
Q ss_pred HHH----------HHHHHhcCCHhHHHHHHHHHHHc---CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041882 255 ALL----------MEGLCFKGEYNEAKKMMFDMAYR---GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV 321 (491)
Q Consensus 255 ~~l----------l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (491)
... ..-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--+...+.+.. -.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 111 12235678888888888887754 23444555666666677788888888887777764211 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
..|..-..++.-.+++++|.+-+++..+..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122222334455678888888888776543
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0057 Score=50.16 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 149 FNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.... +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34444444444444444444444443221111 123444444444555555555555444443211 233344444444
Q ss_pred HhcCC
Q 041882 227 CRTGE 231 (491)
Q Consensus 227 ~~~~~ 231 (491)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.014 Score=52.26 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE-DRAAEAYKVLTEMQIG----GCKPN--AATYRMMVDGF 366 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~ 366 (491)
..|...|++..|-..+..+- ..|... |++++|++.|++..+. + .+. ...+..+...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 34555555555554444433 334444 6667777666665432 2 111 23445566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----CHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCP-----RLE-TFSCLLVGLLKGGKVDDACFVLEEMEKR--KMRFD--LKAWEGLVTDA 436 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~ll~~~ 436 (491)
.+.|++++|.++|++........ +.. .+...+-++...|+...|.+.+++.... ++..+ ......|+.+
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A- 244 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA- 244 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-
Confidence 78888888888888877653221 111 2333444566778888888888887744 23222 4566677775
Q ss_pred HhcCC
Q 041882 437 CIGDG 441 (491)
Q Consensus 437 ~~~~~ 441 (491)
+..++
T Consensus 245 ~~~~D 249 (282)
T PF14938_consen 245 YEEGD 249 (282)
T ss_dssp HHTT-
T ss_pred HHhCC
Confidence 55555
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.0021 Score=52.75 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
+-|++++++|...|+-||..++..++..+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 34555555555555555555555555555433
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.014 Score=56.63 Aligned_cols=143 Identities=10% Similarity=-0.057 Sum_probs=94.2
Q ss_pred CCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKR-----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE--------DRAAEAYKVLTEMQ 348 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~ 348 (491)
.+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++... ++...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355667777777665432 2266788888888876544 444555444433321 12234444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 349 IG-GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 349 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
.. ..+.+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 124455677777666667899999999999999865 67888899999999999999999999998864 44444
Q ss_pred HH
Q 041882 428 AW 429 (491)
Q Consensus 428 ~~ 429 (491)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0068 Score=49.69 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+..+...+...|++++|...|++.......+ ....+..+..++...|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444322111 123444444555555555555555554444
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0015 Score=56.11 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=37.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-AATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344444444444444444333 4444444444444444444444444444332 222 234444444444444444444
Q ss_pred HHHHHHHh
Q 041882 377 KVLNAMLT 384 (491)
Q Consensus 377 ~~~~~~~~ 384 (491)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 44444444
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.066 Score=48.37 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355666777788899999999887775 68999999999999999999987775432 23457899999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 402 LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
.+.|+..+|..++.++.. ..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999887331 3345567888888888877654
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0051 Score=50.26 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI 188 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 188 (491)
...+..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666777777788888888888776543222 23467777777888888888888887777642 22234444455
Q ss_pred HHHH-------hcCChHHHHHHHH
Q 041882 189 KGRL-------KKGEWEEASRVFD 205 (491)
Q Consensus 189 ~~~~-------~~~~~~~a~~~~~ 205 (491)
..+. ..|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4554 5555554444443
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.49 E-value=0.08 Score=48.60 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=83.9
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHh------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--H
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPS------YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH--Y 121 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 121 (491)
.+.++++.++|..+|.+..+.- ..++.. -+.++.++.. .+.+.....+....+.. +. ..|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~--s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GK--SAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CC--chHHHHHHHHHH
Confidence 3567889999999998877542 223222 2455566544 36666666666666543 22 223333322 3
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCc------------CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCCCHHh
Q 041882 122 GKAHLVDKAIEVFNRMTSF--DCVR------------TLQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRPNLIS 183 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~ 183 (491)
-+.+.+.+|++.+....+. +..+ |...=+..+.++...|++.++..+++++... ....+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5778888888887766543 2111 1122256677888899999999988887654 23467788
Q ss_pred HHHHHHHH
Q 041882 184 FNVMIKGR 191 (491)
Q Consensus 184 ~~~ll~~~ 191 (491)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 87754443
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0089 Score=51.80 Aligned_cols=116 Identities=8% Similarity=0.049 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 041882 57 PDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA---HLVDKAIEV 133 (491)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 133 (491)
++....-++...+.+ +-|...|-.|..+|...|+++.|...|....+.. +.++..+..+..++... ....++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334444444444433 4556666666666666666666666666666654 45555555555554332 234456666
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
|+++...+.. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666665532 5555666666666666666666666666654
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.0019 Score=53.00 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------------cCChhHHHHH
Q 041882 180 NLISFNVMIKGRLKK-----GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR----------------TGEMGKAKGL 238 (491)
Q Consensus 180 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~ 238 (491)
+..+|..+++.|.+. |..+-....+..|.+-|+..|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444444444444422 3444444444555555555555555555544322 1234556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
+++|...|+.||..++..++..+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666655543
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.012 Score=52.66 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQ 103 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~ 103 (491)
|......|...+++++|.+.|....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 3444455666677777777776554
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.012 Score=51.14 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV---EDFEGSLKVLNAMLTS 385 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 385 (491)
++.-...++. |...|-.|..+|...|+++.|..-|.+..+.. ++|...+..+..++... ....++..+|++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333444455 88899999999999999999999999987753 56677777777765543 3456788999999886
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTD 435 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 435 (491)
. +-|+.....|...+...|++.+|...|+.|.+. -|....+..+|..
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 4 346777788888899999999999999999975 3344455556553
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00078 Score=45.28 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=26.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
..|++++|.++|+.+.... |.+..+...+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555443 334555555555555555555555555555443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.011 Score=44.51 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHS--YPSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555443332 22333444445555555555555555443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0028 Score=54.54 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
..-+.+.++|.+|+..|...+... +-|...|..-..+|.+.|.++.|++-.+.....+.. ...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 345667788888888888888876 567777888888888888888888887777776522 557888888888888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
.+|++.|++.++. .|+-.+|-.=+...
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 8888888877764 67766665555443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.15 Score=49.41 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=77.4
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-cCCC--------CCHHHHHHHHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQD-FNIR--------CKETLFISLIQHY 121 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~l~~~~ 121 (491)
|...=..++|.++.+ -.|.+..|..+.......-.++.|...|-+... .|++ .+...-.+=+.
T Consensus 673 Lve~vgledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~-- 744 (1189)
T KOG2041|consen 673 LVEAVGLEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS-- 744 (1189)
T ss_pred HHHHhchHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--
Confidence 344444556666554 257788899998888888888888887765543 2221 11111111122
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+--|++++|++++-++-.++. .|..+.+.|+|-.+.++++.--.. .-.--...|+.+...++....|++|
T Consensus 745 ~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334889999999887765432 345555666666666655431100 0000124555566666666666666
Q ss_pred HHHHHH
Q 041882 201 SRVFDE 206 (491)
Q Consensus 201 ~~~~~~ 206 (491)
.+.|..
T Consensus 816 ~~yY~~ 821 (1189)
T KOG2041|consen 816 AKYYSY 821 (1189)
T ss_pred HHHHHh
Confidence 665543
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.019 Score=43.22 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHH
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPN--AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--PRLETFSCLLVGLL 402 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 402 (491)
+..++-..|+.++|+.+|++..+.|.... ...+..+..++...|++++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666777777776666654433 224445555666667777777777666654211 01222223334556
Q ss_pred cCCCHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEME 418 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~ 418 (491)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777666665544
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.023 Score=55.13 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC--------ChhhHHHHHHHHH
Q 041882 107 IRCKETLFISLIQHYGKA-----HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND--------RVDDAKRMFDDAD 173 (491)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~ 173 (491)
.+.+...|...+++.... +....|..+|++..+.++. ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 366777777777775432 2366788888888876522 4455555444333221 1234444444433
Q ss_pred HC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 174 KM-GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 174 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
.. ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|++++|.+.|++......
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 32 123345667766666667789999999999988875 5778888889999999999999999988877643
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.32 E-value=0.0011 Score=44.63 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=39.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLV 433 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 433 (491)
...|++++|+++|+++.... +.+...+..++.+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34567777777777776653 235666666777777777777777777777754 44544444443
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.006 Score=54.76 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCCHH
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAY----RGCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK----RQY-KPDVV 322 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 322 (491)
.|..+-..|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667778887766544322 2211 1234566677777777888888887775432 211 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIG-----GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+.-.|..+|.-..++.+|+.++.+-..- ...-....+.++..++...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666776667777887776653321 1123445677788888888888888877766554
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.04 Score=46.53 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHcCCCHHHH
Q 041882 362 MVDGFLRVEDFEGSLKVLNAMLTSR--HCPRLETFSCLLVGLLKGGKVDDA 410 (491)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 410 (491)
+..-|.+.|.+..|..-++.+++.- ..........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666677777777777666651 111123445556666666666643
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.065 Score=42.90 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=87.2
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG---CKPNAATY 359 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 359 (491)
.|+...--.|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556677777778888888888777664444566777777777777788888888887776642 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
-.+.+.+...|.+..|+..|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44566777778888888888887774 3555444445556677777776665544444
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.15 Score=46.34 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=156.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+.+..++..|+..+...++.. +.+...|..-...+...+++++|.--.+.-.+.... ......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 4455667777777777777766 445666666666677777777776555544433211 12223333333333344444
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHH-HHHHhcCChhHHHHHHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV-PPTVVTYNSLI-GFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~ 242 (491)
|.+.++ +...+ ....++..++....... +|.-.+|..+- .++.-.|++++|...--..
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444443 11111 11222333333222221 23334444332 3566778999998887777
Q ss_pred HHcCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH-------------HHHHHhcCChHHHHH
Q 041882 243 IKKGTYPNAVTYALLME--GLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL-------------MSDLGKRGKIEEAKS 307 (491)
Q Consensus 243 ~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------l~~~~~~~~~~~a~~ 307 (491)
.+.... +. +...+. ++.-.++.+.+...|.+.+..+ |+...-... ..-..+.|.+..|.+
T Consensus 196 lkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 765322 22 333333 3456778889999888887663 443322111 223356788899999
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHH
Q 041882 308 LLSEMKKR---QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR---MMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 308 ~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~ 381 (491)
.|.+.... +.+|+...|.....+..+.|+..+|+.--++... .|..-.. .-..++...++|++|.+.+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888764 3455666777777778888999998888777764 3433222 223456667888999988888
Q ss_pred HHhCC
Q 041882 382 MLTSR 386 (491)
Q Consensus 382 ~~~~~ 386 (491)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 88763
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.074 Score=42.60 Aligned_cols=102 Identities=9% Similarity=0.030 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHhHHHH
Q 041882 109 CKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPNLISFNVM 187 (491)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l 187 (491)
|+..-...|.....+.|+..+|...|++...--...|....-.+.++....+++..|...++++-+... .-+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444445555555555555555555554432333444555555555555555555555555544320 0011223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 041882 188 IKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
.+.+...|.+.+|+.-|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555555555555555555543
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.22 E-value=0.039 Score=46.60 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
...+...|++.+|.+.|+.+..... +.-....-.++.++-+.|+++.|...+++...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455666666666666554321 11223344455555566666666666655544
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.15 Score=45.92 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=182.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH--HhCCChhhHHHHHHHHHHCCCCCCHHh--HHHH
Q 041882 114 FISLIQHYG--KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL--VDNDRVDDAKRMFDDADKMGFRPNLIS--FNVM 187 (491)
Q Consensus 114 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l 187 (491)
|.+|-.++. -.|+-..|.++-.+.... +.-|....-.++.+- .-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 445544443 346777777766554322 122444444454443 3469999999999999863 33322 2233
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH--
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYPNAV--TYALLMEGLC-- 262 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~-- 262 (491)
.-..-+.|+.+.|.++-+...+.-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33345678888888888887665322 45678888999999999999999998876542 233322 1222222211
Q ss_pred -hcCCHhHHHHHHHHHHHcCCCCChhcH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 263 -FKGEYNEAKKMMFDMAYRGCKPQLVNF-GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 263 -~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
-..+...|...-.+..+. .||..-- ..-..++.+.|+..++-.+++.+-+..+.|+ ++... .+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCCc--H
Confidence 122455555554444433 5553322 2334678889999999999999988755444 33322 23445543 3
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-CCCHHHHHHHHHHH
Q 041882 341 YKVLTEMQIG-GCKP-NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK-GGKVDDACFVLEEM 417 (491)
Q Consensus 341 ~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 417 (491)
..-+++.... .++| +......+.++-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3323322211 1344 445666777888889999998888777766 45888888888876654 49999999999988
Q ss_pred HHCCCCC
Q 041882 418 EKRKMRF 424 (491)
Q Consensus 418 ~~~~~~~ 424 (491)
.+..-.|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 8664444
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0036 Score=56.12 Aligned_cols=265 Identities=12% Similarity=0.044 Sum_probs=158.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--cCC-CCCHHHHHHHHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYP----SYASLIYKLARARDFDAVETVLGYI--QD--FNI-RCKETLFISLIQ 119 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~l~~ 119 (491)
..|++.|+....+.+|+..++-| ..|.. +|..|..+|.-.+++++|++....= .. .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45889999999999999999887 33433 4666677777888999998876421 11 110 011233445666
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCCC-CcCHHHHHHHHHHHHhCCC--------------------hhhHHHHHHHHHH
Q 041882 120 HYGKAHLVDKAIEVFNRM----TSFDC-VRTLQSFNSLLDILVDNDR--------------------VDDAKRMFDDADK 174 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~ 174 (491)
.+--.|.+++|+..-.+- .+.|- .....++-.+..+|...|. ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666678888876543221 22210 1123455556666665543 2233333332111
Q ss_pred ----CCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 175 ----MGF-RPNLISFNVMIKGRLKKGEWEEASRVFDEMLE----REVP-PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 175 ----~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.|- ..--..|..|-..|.-.|+++.|+...+.-.+ -|-. .-...+..+..++.-.|+++.|.+.|+.-..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01123455555666667888888877655322 2211 1344677788888888999999988887543
Q ss_pred c----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 245 K----GT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR-----GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 245 ~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
. |- .....+..++..+|.-..++..|+.++.+-... ...-....+.+|..+|...|..+.|..+.+...+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 21 223445566777777778888888887665432 1123356677888888888888888877665443
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.15 E-value=0.002 Score=43.45 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTS 139 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 139 (491)
..|..+...+...|++++|...|+...+.+ +.+...+..+..++...| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555555555555555555555544 334455555555555555 45555555555443
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0025 Score=42.30 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDAD 173 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 173 (491)
.+.+.|++++|+..|+++.+... -+...+..+..++...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444331 134444444444444444444444444443
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0021 Score=42.70 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=34.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
...+.+.|++++|.+.|+.+.+.. +.+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556666666666666666655 445566666666666666666666666666543
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.10 E-value=0.22 Score=45.74 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQ-YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY-RMMVDGF 366 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~ 366 (491)
|...+.+..+...++.|..+|-+..+.+ ..++..++++++..++. |+..-|..+|+--... -||...| ...+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4445555555556666666666666655 44555666666665543 5556666666554332 2333333 2334445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPR--LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...++-+.|..+|+..++. +..+ ..+|..++..-..-|+...+..+-++|.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5566666666666644443 1112 34566666666666666666666555554
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.22 Score=45.59 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCcCHHHHHHHHHHHHh---CCChhhHHHHHHHHHHCCCCCCHHhH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSF---DCVRTLQSFNSLLDILVD---NDRVDDAKRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~ 184 (491)
..+...++-.|....+++..+++.+.+... .+..+...-....-++.+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344445555566666666666666666553 111123333344444445 56666777776664444445566666
Q ss_pred HHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh----HHHHHH---H-HHHHcCC
Q 041882 185 NVMIKGRLK---------KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG----KAKGLF---E-DMIKKGT 247 (491)
Q Consensus 185 ~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~---~-~~~~~~~ 247 (491)
..+.+.|-. ....+.|...|.+.-+.. |+..+--.++..+...|... +..++- . .+.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 655554321 123566666666655432 33333223333333333211 122222 1 1112222
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 248 ---YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 248 ---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
..+-..+.+++.+..-.|+.++|.+..+.|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234555677777777888888888888887766
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0044 Score=41.71 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGG-KVDDACFVLEEME 418 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 418 (491)
+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|.+.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444455555555555444432 113344444444444444 3455555544444
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.017 Score=50.61 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGSLKVLNAMLTSR--HCPRLETFSC 396 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 396 (491)
.|...+..+.+.|++++|...|+.+... .|+. ..+..+..+|...|++++|...|+.+.+.. -+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444444556677777777766654 2322 345556666667777777777777776541 1112334444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666677777777777776654
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.019 Score=45.59 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-----KGTYPNAVT 253 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 253 (491)
...++..+...|+++.|..+.+.+...... +...|..+|.+|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555555666666666666666665332 566666666666666666666666666542 256655544
No 208
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.76 E-value=0.89 Score=47.31 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
.++.--++|-+.+|..++..=.+. -...|.+....+.....+++|.-+|+..-+ ....+.+|..+|+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 333344445555554444321111 223444455555567777777777765421 2234677888888
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 372 FEGSLKVLNAMLTSRHCPRL--ETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|.+|+.+..++... -+. .+-..|+.-+..++++-+|-++..+...
T Consensus 981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 88888887776542 121 1225677777788888888888777764
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.012 Score=40.00 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444443 33444444444444444444444444444443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.067 Score=46.92 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 364 (491)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|+.+...- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655432211 2344555566666666666666666665431 1112233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 041882 365 GFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+...|+.++|..+|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666654
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.79 Score=45.14 Aligned_cols=340 Identities=10% Similarity=0.053 Sum_probs=169.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHCCC
Q 041882 105 FNIRCKETLFI-----SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR--VDDAKRMFDDADKMGF 177 (491)
Q Consensus 105 ~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 177 (491)
.|++.+..-|. .+++-+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++..++=.....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34444444443 3345555666677777666555432111 14455555555555432 1223333322222212
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041882 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV----PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT 253 (491)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (491)
-+...|..+.+.....|+.+.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+.+.- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 2344566666666667777777766644222110 0112223344444555555555555555554320 1111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH-HHHHH----HcCCCCCHHHHHHHH
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL-LSEMK----KRQYKPDVVTYNILI 328 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~li 328 (491)
|.. ...+...|..+|.+..+..-. ..+-+.|-...+...+-.+ ++... ..+..|+ .....
T Consensus 581 l~~------~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 581 LFM------TLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHH------HHHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 111 112334455555554442111 0111222222222222111 11111 1122222 22333
Q ss_pred HHHHhcCC----------HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 041882 329 NYLCKEDR----------AAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCL 397 (491)
Q Consensus 329 ~~~~~~~~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 397 (491)
.++.+... ..+-+.+.+.+... |..-...+.+--+.-+...|+..+|.++-.++. -||-..|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHH
Confidence 34443322 22223333333222 333444556666777888899999999877664 3888999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCc
Q 041882 398 LVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGT 477 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~ 477 (491)
+.+++..++|++-+++-+... .+.-|.-.+.++.+.|+..++.+.+-+..... .....|.+.|.
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~----------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ----------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH----------HHHHHHHHhcc
Confidence 999999999999777766554 24556678888888888888887775543331 34455666666
Q ss_pred chhhhhH
Q 041882 478 CVVIDLF 484 (491)
Q Consensus 478 ~~~~~~~ 484 (491)
+.+|...
T Consensus 786 ~~eAad~ 792 (829)
T KOG2280|consen 786 VKEAADL 792 (829)
T ss_pred HHHHHHH
Confidence 6665544
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.024 Score=44.96 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHhHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK-----MGFRPNLISFN 185 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~ 185 (491)
.+...++..+...|+++.|+.+.+.+...++ -+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455667777788888888888888877663 3777888888888888888888888887643 37888776543
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.58 E-value=0.054 Score=41.29 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhc
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEME-KRKMRFDLKAWEGLVTDACIG 439 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~ 439 (491)
...|+..+..+++.+|+..|++..|.++.+.+. ..+++.+...|..|++=....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 355888999999999999999999999999887 457788889999999843333
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.56 E-value=0.28 Score=38.91 Aligned_cols=86 Identities=12% Similarity=-0.065 Sum_probs=43.1
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|..+|..+.-.+ ..+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 45555556655555555443 223333444444444555555555555554443322 3333444455555555555555
Q ss_pred HHHHHHHh
Q 041882 342 KVLTEMQI 349 (491)
Q Consensus 342 ~~~~~~~~ 349 (491)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.50 E-value=0.024 Score=38.58 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+.+.++++.|.++++.++..+ +.+...+.....++...|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 12333344444444444444444444444443
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=0.1 Score=50.09 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE------- 392 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 392 (491)
+..+...+...+.+...+.-|-++|.+|-+ ...+++.....++|.+|..+-+..-+. .||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 334444444445555666667777766543 123556666677777777766654442 22221
Q ss_pred ----hHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 393 ----TFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 393 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
-|...-.+|.+.|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2333445677888888888888887654
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.46 E-value=0.11 Score=41.03 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=53.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 041882 191 RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA 270 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (491)
+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 44567777777777766655433 5555666666666677777777777665544322 333344455666677777777
Q ss_pred HHHHHHHHH
Q 041882 271 KKMMFDMAY 279 (491)
Q Consensus 271 ~~~~~~~~~ 279 (491)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 776666655
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=1 Score=44.00 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCc--------CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-DCVR--------TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFR 178 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 178 (491)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=+.+| -|++++|.++|-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 577888888888888878888888887666443 2210 111111122222 378888888887776542
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 179 PNLISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (491)
..+..+.+.|+|-.+.++++.--.. +-..-...|+.+...++....|++|.+.|...... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 3455666777777666665431110 00012346777777777777777777777654221 123
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
+.++.+..++++.+.+...+ +.+....-.+.+++...|.-++|.+.
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHH
Confidence 45555555555544443332 22233333444444444444444433
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.39 E-value=0.062 Score=40.97 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 041882 351 GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCPRLETFSCLLVGL 401 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 401 (491)
...|+..+..+++.+|+..+++..|.++.+.+.+. +++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35677888888888888888888888888877776 6666677777777533
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.012 Score=40.70 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PR-LETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+++.+...|...|++++|+..|++.++. |-. |+ ..++..+..++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655532 111 11 3455666666777777777777776654
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.33 E-value=1.1 Score=43.35 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 251 AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
..+...+..-+-+...+..|.++|..|-.. ..+++.....+++.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444455566677777777766432 3466667777888888777766554
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.32 E-value=0.8 Score=41.54 Aligned_cols=310 Identities=14% Similarity=0.107 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLA--RARDFDAVETVLGYIQDFNIRCKETLFISLIQH--YGKAHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a 130 (491)
..+..+.++|..-.+. ..|..|-..+. -.||-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|
T Consensus 67 ~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 67 ESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred hCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 3455555565543321 13444444443 356777777766654432 12333334444433 2346788888
Q ss_pred HHHHHHhhhCCCCcCHHH--HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 131 IEVFNRMTSFDCVRTLQS--FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.+-|+.|... |.... ...|.-..-+.|..+.|.++-+..-.... --...+...+...+..|+|+.|+++++.-.
T Consensus 140 r~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 140 RKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8888888752 22211 22333333456777777777776654421 123556677777788888888888877655
Q ss_pred hCC-CCCChh--hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 209 ERE-VPPTVV--TYNSLIGFLCR---TGEMGKAKGLFEDMIKKGTYPNAV-TYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 209 ~~~-~~~~~~--~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
+.. +.++.. .-..|+.+-.. ..+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+..
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 432 223321 12223322211 23455555555444443 33321 12233466777888888888888777764
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKP-DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
|.+.... +-.+.+.|+ .+..=+++..+. ..+| +..+...+..+-...|++..|..--+.... ..|....|
T Consensus 294 --PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 --PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred --CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 3333322 222334444 222223222211 1222 455566666777777777777766655544 36777777
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 041882 360 RMMVDGFL-RVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 360 ~~li~~~~-~~~~~~~a~~~~~~~~~~ 385 (491)
..|.+.-. ..||-.++...+.+.+..
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66666433 447888888877777764
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.58 Score=39.95 Aligned_cols=139 Identities=15% Similarity=0.006 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV----- 363 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 363 (491)
.+.++..+...+.+.-....+.++++....-++.....+++.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555566666666666666666555566666666666667777777777776554432233333333322
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWE 430 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (491)
..+.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23444566667777776666653 234444444444555567777777777777764 34444444
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.28 E-value=0.94 Score=41.91 Aligned_cols=383 Identities=12% Similarity=0.085 Sum_probs=217.5
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 60 ALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 60 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
-+++-+++.+ .+.|..+|-.|+..+..++..++..+++++|..-- +.-+.+|..-+.+-...++++..+.+|.+...
T Consensus 28 ~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 3455555554 36788899999999999999999999999998643 55567788778877778999999999999877
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCh------hhHHHHHHHHHH-CCCCCCH-HhHHHHHHH---HHhcC------ChHHHHH
Q 041882 140 FDCVRTLQSFNSLLDILVDNDRV------DDAKRMFDDADK-MGFRPNL-ISFNVMIKG---RLKKG------EWEEASR 202 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~p~~-~~~~~ll~~---~~~~~------~~~~a~~ 202 (491)
.. .+...|...+.-..+.+.. ....+.|+-... .++.|-. ..|+..+.. .-..| +++...+
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 53 4677777777665554321 122333443333 2444433 344444432 22233 4555666
Q ss_pred HHHHHHhCCCCCChhhHH------HHHHHHHh---cC----ChhHHHHHHHHHHH--cCCCC----CHHHH---------
Q 041882 203 VFDEMLEREVPPTVVTYN------SLIGFLCR---TG----EMGKAKGLFEDMIK--KGTYP----NAVTY--------- 254 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~------~ll~~~~~---~~----~~~~a~~~~~~~~~--~~~~~----~~~~~--------- 254 (491)
.+.++..-.+..=...|+ .=+.-... .| -+-.|...++++.. .|... +..++
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 777776542211111121 11110000 01 12344455554432 12210 11111
Q ss_pred --HHHHH-----------------------------------------HHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 255 --ALLME-----------------------------------------GLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 255 --~~ll~-----------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
...|+ -+...++-..|...... |++-.+...-.
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ 338 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMF 338 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchhee
Confidence 11111 01222333333333222 22222111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--------------cCC---------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKK--------------RQY---------------KPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
+-..|.-.++.+.....|+.... .+. ..-..+|...+.+..+....+.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 22222222333332222222110 001 0123457777887788888999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 343 VLTEMQIGG-CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETF-SCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 343 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+|-++...+ +.++...+++++.-++ .|+...|..+|+--+.. + ||...| ...+..+.+-|+-+.|..+|+....+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 999999888 5677778888888665 58899999999977765 2 444433 56677788899999999999966653
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCCcchhHHHHHHhhh
Q 041882 421 KMRFD--LKAWEGLVTDACIGDGNAGGLVEIRDMRDY 455 (491)
Q Consensus 421 ~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~ 455 (491)
+..+ ...|..+|..=..-|+...+..+-++|...
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 3334 568888888666677766665555555543
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=1.1 Score=41.31 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCCHHhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhh
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMG---FRPNLISFNVMIKGRLK---KGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
+..+...++-.|-...+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444566667888889999999999887652 11122222234445556 7899999999988666666778888
Q ss_pred HHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-H---hHHHHHH----HHHHHcC
Q 041882 219 YNSLIGFLCR---------TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE-Y---NEAKKMM----FDMAYRG 281 (491)
Q Consensus 219 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~a~~~~----~~~~~~~ 281 (491)
|..+.+.|-+ ....++|+..|.+.-+.. ||...=-.++..+...|. . .+..++- ..+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888877643 224678888888776542 443322222222222332 1 1222222 1122233
Q ss_pred C---CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 282 C---KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 282 ~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
. ..+-..+..++.++.-.|+.++|.+..+.|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234445567888888899999999999998876
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.02 Score=39.54 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIG----GC-KPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+|+.+...|...|++++|+..|++..+. |- .|. ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777666532 10 111 34556666677777777777777776654
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.12 E-value=1.2 Score=41.43 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=88.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH--H
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKE------TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI--L 156 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~ 156 (491)
.+-+++++.++.++|.++.+.. ..++ ...+.++++|.. ++.+.....+....+.. | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3557899999999999887653 2222 233466666654 45555555555554432 2 2234444333 4
Q ss_pred HhCCChhhHHHHHHHHHHC--CCCC------------CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCChhh
Q 041882 157 VDNDRVDDAKRMFDDADKM--GFRP------------NLISFNVMIKGRLKKGEWEEASRVFDEMLERE----VPPTVVT 218 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 218 (491)
.+.+.+++|++.+....+. +..| |...=+..+.++...|++.++..+++++...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5678899999888776554 2222 11222566778889999999999998887643 3368888
Q ss_pred HHHHHHHHHh
Q 041882 219 YNSLIGFLCR 228 (491)
Q Consensus 219 ~~~ll~~~~~ 228 (491)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8886655544
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.14 Score=47.63 Aligned_cols=64 Identities=17% Similarity=0.044 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778899999999999999999999998875 5664 35888999999999999999999999885
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.00 E-value=0.56 Score=36.77 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..+.++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666667777777777766653 46667777777776543 3344444432 1222233446666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKG-GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
.+.++++..++.++.. +...+..+... ++++.|.+++.+-. ++..|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHH
Confidence 7777777777665522 12223333333 67777777666421 556777776643
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.95 E-value=0.91 Score=38.86 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+.+.|.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345566666666666666666654 2111 223444555666666666666554444433
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.95 E-value=0.84 Score=44.14 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh------cHHHHHHHHH----hcCChHHH
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV------NFGVLMSDLG----KRGKIEEA 305 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~----~~~~~~~a 305 (491)
.-+|+-+... ++| .+..+++...=.||-+.+++.+....+.+---.+. .|..++..+. ...+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4445554443 222 24456666667788888888777765533111111 1222222222 24567888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 306 KSLLSEMKKRQYKPDVVTYNIL-INYLCKEDRAAEAYKVLTEMQIGGC---KPNAATYRMMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (491)
.++++.+.+. .|+...|... .+.+...|+.++|++.|++...... ......+--+..++....+|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8999988876 3555555433 4455678999999999987654211 12233455566777888999999999999
Q ss_pred HHhCCCCCCHHhHHHHHH-HHHcCCCH-------HHHHHHHHHHH
Q 041882 382 MLTSRHCPRLETFSCLLV-GLLKGGKV-------DDACFVLEEME 418 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~ 418 (491)
+.+.. ..+..+|..+.- ++...|+. ++|.++|.++.
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98863 234445544443 34457777 78888888765
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.36 Score=45.03 Aligned_cols=67 Identities=7% Similarity=-0.051 Sum_probs=49.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+.+...+..+..+|...|++++|...|+...+.+ +.+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556677777788888888888888888877765 3333 34777888888888888888888887764
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.34 Score=41.72 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHhHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HCP-RLETFSCLL 398 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~ 398 (491)
.|+.-+..| +.|++..|...|....+.. -.-....+-.|.+++...|+++.|..+|..+.+.- -.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766654 4577889998888888752 11223455667888888999999999998888762 112 346777788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 041882 399 VGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999988875
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.39 Score=42.46 Aligned_cols=153 Identities=11% Similarity=-0.062 Sum_probs=79.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH----HHHHHHHHHHhCCC
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ----SFNSLLDILVDNDR 161 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~ 161 (491)
+.-.|+..+|-..++++.+.- |-|.-.+..-=.+|...|+...-...++++...- .++.. ....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 345566666666666666543 4455555555556666666666666666665430 12222 22233344455666
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER---EVPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
+++|++.-++..+.+ +-|......+...+--.+++.++.+...+-... +--.-..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 777777666666554 234555555556666666666666655443221 1000111122222334445667777777
Q ss_pred HHH
Q 041882 239 FED 241 (491)
Q Consensus 239 ~~~ 241 (491)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.58 E-value=0.59 Score=44.54 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=79.5
Q ss_pred hhhcCChHHHHHHHH--HhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 51 LKEIRDPDEALSLFH--RHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 51 l~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..-.++++.+.+..+ .+.. .+ +....+.++..+.+.|-.+.|+++-.. +. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 344566666666554 1111 11 134466666666677777766665422 11 1223445667777
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.|.++.++. .+...|..|.......|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 766654332 255577777777777777777777776533 24455556666677666666666655
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 144444455555666666655544
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.41 E-value=1.5 Score=37.58 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCP---RLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+-|.+.|.+..|..-++.|++. .+- ....+-.+..+|...|-.++|...-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44566667777777777777665 221 223344455666666766666665554443
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=1.7 Score=38.05 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445555555555554443322 333444455555555555555555554433211111111112223333333333333
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 265 (491)
.+-...-.. +-|...-..+...+...|+.++|.+.+-.+... |.. |...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 333332221 114444444555555555555555544444432 222 3334444444444444
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=1.9 Score=38.50 Aligned_cols=164 Identities=15% Similarity=0.052 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 252 VTYALLMEGLCFKGEYN---EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILI 328 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 328 (491)
.++..++.+|...+..+ +|.++++.+.... +.....+..-++++.+.++.+.+.+++.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 44566677777766554 3445555554332 223444555566666677888888888888775221 233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHH---HHHhcCC------HHHHHHHHHHHHhC-CCCCCHHh
Q 041882 329 NYL---CKEDRAAEAYKVLTEMQIGGCKPNAA-TYRM-MVD---GFLRVED------FEGSLKVLNAMLTS-RHCPRLET 393 (491)
Q Consensus 329 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-li~---~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~ 393 (491)
..+ .. .....+...+..+....+.|... .... ++. .....++ .+....+++...+. +.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 23345556665555444444443 1111 111 1112111 34444445533332 22223332
Q ss_pred H---HHHH----HHHHcCCCHHHHHHHHHHHH
Q 041882 394 F---SCLL----VGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 394 ~---~~l~----~~~~~~g~~~~a~~~~~~~~ 418 (491)
- .+++ ..+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 2222 34567889999999888544
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.37 E-value=1 Score=35.29 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
.++..+...+.+.....+++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555544432 3444455555555443
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.34 E-value=2.9 Score=40.39 Aligned_cols=383 Identities=11% Similarity=0.061 Sum_probs=219.6
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
..|+.++...-...+.+.+..++..++.. .|-.. -|......=.+.|..+.+.++|++.... ++.+...|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 45666777776667777777778877753 45444 3455555566788999999999988763 56777777776665
Q ss_pred HH-hcCCHHHHHHHHHHhhhC-CC-CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----
Q 041882 121 YG-KAHLVDKAIEVFNRMTSF-DC-VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK---- 193 (491)
Q Consensus 121 ~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---- 193 (491)
+. ..|+.+...+.|+..... |. -.+...|...|..-..++++.....+++..++. | ...|+....-|.+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhc
Confidence 54 457788888888887653 21 125568888888888889999999999998874 2 2223222222211
Q ss_pred -----cCChHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHHH-------HHHhcCChhHHHHHH
Q 041882 194 -----KGEWEEASRVFDEMLE--------------------REVPPTV--VTYNSLIG-------FLCRTGEMGKAKGLF 239 (491)
Q Consensus 194 -----~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~~~ 239 (491)
....+++.++-..... .+.+.+. ...+.+-. ++.......+....+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1123333332222221 0000000 01111111 111222222333333
Q ss_pred HHHHHc---CC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 240 EDMIKK---GT----YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 240 ~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.-+.. .+ .++..+|...+.--...|+.+.+.-.++...-. +..=...|--.+.-....|+.+-|..++...
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 333322 11 124567777777778899999998888877632 0111222333344444558888888887776
Q ss_pred HHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCC
Q 041882 313 KKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA-TYRMMVDGFLRVEDFEGSL---KVLNAMLTSR 386 (491)
Q Consensus 313 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~---~~~~~~~~~~ 386 (491)
.+-..+-. ...+.+.+ .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++....+..
T Consensus 358 ~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 65533322 22233222 234689999999999988752 5443 2222344555678877777 3333333321
Q ss_pred CCCCHHhHHHH----HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041882 387 HCPRLETFSCL----LV-GLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG 439 (491)
Q Consensus 387 ~~~~~~~~~~l----~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 439 (491)
.+..+...+ .+ .+.-.++.+.|..++.++.+. +.++...|..++.-....
T Consensus 434 --~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 434 --ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred --cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 222222222 22 233468899999999999986 566777888888743333
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=1.8 Score=37.90 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=88.6
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
......|++.+|..+|......... +...-..+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667788888888777665322 344555677788888888888888877765432222222233455555666665
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCChHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-CKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 555555555443 1155555566777777888888777766665542 13344555666666666664333
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.28 E-value=0.77 Score=43.77 Aligned_cols=158 Identities=13% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
+...-.++++.+.++.+.-.-.. ..+....+.++..+-+.|..+.|+++-++ . ..-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 33445566666655554111110 11244566666666677777777665322 1 12334445567766
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 666655432 2556677777777777777777777665432 4555566666676666666666555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 244 KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
..|- ++....++.-.|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 3333444445556555555544
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.26 E-value=0.17 Score=43.45 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456677777777777777777777777766554
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.04 E-value=1.1 Score=33.90 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
....+..+...|+-++-.+++.++...+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444445555555555555444321 4444444444455555555555555555554444
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.55 Score=42.83 Aligned_cols=60 Identities=12% Similarity=-0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+..+..++.+.+++..|+..-+...+.+.. |....-.-..++...|+++.|+..|+++.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444455555555555555555544333 444333444555555555555555555554
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.02 E-value=2.1 Score=41.49 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH------HHHHHHHHHHHh----CCChh
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL------QSFNSLLDILVD----NDRVD 163 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~----~~~~~ 163 (491)
-..-+|..+.+.= || .+..++...+-.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ....+
T Consensus 175 ~G~G~f~L~lSlL-Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSLL-PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHhC-CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445556665542 33 3556777777788999998888876553211122 234555544444 35678
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVM-IKGRLKKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .......+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 899999999876 4676666433 345677899999999999765421 1123344555677788889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHHHc
Q 041882 240 EDMIKKGTYPNAVTYALLME-GLCFKGEY-------NEAKKMMFDMAYR 280 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~~ 280 (491)
..+.+..-- +..+|.-+.. ++...++. ++|..+|.+....
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999886322 3444444333 34456766 8888888877543
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.89 E-value=2.7 Score=37.56 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
++..-+..+.+.++.+++.+.+.+|+..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3334444444455555555555555544
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.85 E-value=0.27 Score=42.28 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 041882 144 RTLQSFNSLLDILVDN-----DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3555555555555432 3344444455555556666666666655554433211 1110 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY-NEAKKMMFDM 277 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 277 (491)
+....-.|- .+-+-++.++++|...|+.||..+-..++.++.+.+-. .+..+++--|
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 111111111 23345788999999999999999999999998877643 3334443333
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.75 Score=41.96 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET-FSCLLVG 400 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 400 (491)
.+++.+..+|.+.+++..|++.-...++.+ ++|....-.=.++|...|+++.|+..|+++++. .|+... -+.++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 355667778888888888888888888765 667777666778888888888888888888884 454443 3344444
Q ss_pred HHcCCCH-HHHHHHHHHHHHC
Q 041882 401 LLKGGKV-DDACFVLEEMEKR 420 (491)
Q Consensus 401 ~~~~g~~-~~a~~~~~~~~~~ 420 (491)
--+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 3343333 3446777777643
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.75 E-value=2.4 Score=39.81 Aligned_cols=148 Identities=9% Similarity=0.121 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHhhhC-CCCCC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 56 DPDEALSLFHRHHQM-GSKHS-YPSYASLIYKLAR---------ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 56 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+.+.|+.+|.+.... ...|+ ...|..+...+.. ..+..+|.+.-+...+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 446888899988821 12333 4445444433222 234456677777777777 66778777777777777
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+.. .+.........+..|+.. ..++|.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 8888888888888776522 45566666666667788888888888866542 111222333344455544 35666666
Q ss_pred HHH
Q 041882 204 FDE 206 (491)
Q Consensus 204 ~~~ 206 (491)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.60 E-value=0.11 Score=31.05 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+..+...|.+.|++++|+++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.60 E-value=0.56 Score=41.11 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK-----RKMRFDLKAWEG 431 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 431 (491)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...++..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677888888899999999999998864 34788899999999999999999999888764 688998888888
Q ss_pred HHHH
Q 041882 432 LVTD 435 (491)
Q Consensus 432 ll~~ 435 (491)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8776
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.56 E-value=1.1 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
..|+.+.|++.|.+.... .+-+...|+.-.+++.-.|+.++|.+-+++.++
T Consensus 55 E~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred hccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444332 122333444444444444444444444444444
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=94.53 E-value=4.3 Score=38.27 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 302 IEEAKSLLSEMKKR-QYKPD-VVTYNILINYLCK---------EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 302 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
.+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 56777778877722 22333 3344444333321 234556777777777765 667777777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCCcchhHH
Q 041882 371 DFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRK-MRFDLKAWEGLVTDACIGDGNAGGLVE 448 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~ 448 (491)
+++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+.. .+.-.......+..|| ....++++..
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHH
Confidence 8999999999888854 54 4566666667777899999999888866531 1112333444444444 3445566666
Q ss_pred HHH
Q 041882 449 IRD 451 (491)
Q Consensus 449 ~~~ 451 (491)
+.+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.50 E-value=0.71 Score=34.78 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcC
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM---VDGFLRVE 370 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~ 370 (491)
-+.+..|+.+.|++.|.+....-++ ....||.-.+++.-.|+.++|++=+.+..+..-..+....... ...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567789999999999998886444 7888999999999999999999988888775322233222222 22455667
Q ss_pred CHHHHHHHHHHHHhCC
Q 041882 371 DFEGSLKVLNAMLTSR 386 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~ 386 (491)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777765
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.41 E-value=0.53 Score=41.26 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCChhhHHH
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE-----REVPPTVVTYNS 221 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 221 (491)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555555566665555555543 22455555566666666665555555555433 355555555554
Q ss_pred HHHH
Q 041882 222 LIGF 225 (491)
Q Consensus 222 ll~~ 225 (491)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=1.3 Score=38.24 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CC-CHHhHHHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RP-NLISFNVM 187 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l 187 (491)
..|+.-+..+ +.|++..|...|.......+. -...++--|..++...|++++|..+|..+.+.-. .| -+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3555555443 456677777777766554311 1223444467777777777777777777665411 11 12455556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 041882 188 IKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66667777777777777777665
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.23 E-value=1.8 Score=32.79 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
...+...+......|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677788889999999999988764 3578888888999999999999999999999998864
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=2.4 Score=37.79 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=98.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HH--HHHHHHHHhcCCH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVV--TY--NILINYLCKEDRA 337 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~li~~~~~~~~~ 337 (491)
-..|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++... -.+|.. +| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3466677777777777765 3667777777777888888888888888777654 122322 22 3334445578888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS---RHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
++|++.-++..+.+ +.|......+...+...|++.++.++..+-... +...-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888877654 455556666667777788888888775544332 10011223334444566678888888888
Q ss_pred HHHH
Q 041882 415 EEME 418 (491)
Q Consensus 415 ~~~~ 418 (491)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
No 260
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=3.1 Score=35.37 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
--..+|....++++|...+.+..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 33344555555555555444443
No 261
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=94.17 E-value=3.5 Score=35.86 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=68.4
Q ss_pred hhcCChHHHHHHHHHhhhCC-----CCCCHH--------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMG-----SKHSYP--------SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.-..|+..|++..++-.+.= ...+.. ....-|++++..++|.++....-+.-+..-+..+.+...-|
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI 125 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 33578888888877754321 111111 11223677777777777766655444433344556666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH-----hCCChhhHHHHH
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV-----DNDRVDDAKRMF 169 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~ 169 (491)
-.|.+.+.+..+.++-......--..+...|..++..|. -.|.+++|+++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777788888777777666655322233444655554444 357777777766
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.07 E-value=0.22 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.++..+...+.+.|++++|.++++.+.+.. |.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 356677778888888888888888888775 55666555443
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=1.6 Score=43.68 Aligned_cols=179 Identities=11% Similarity=0.121 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCK--ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
....-+..+.+..-++.|..+-+. .+.+++ ..........+.+.|++++|...|-+.... +.|+ .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 345556677777777777665433 222222 133334444556788999988877665442 1222 25556
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.+...+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777778888888888865 55566778889998888877766665544 2211 01133455555555656666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
..+-..... +......++ ...+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444322 222333332 3455666666665543
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=7.7 Score=39.25 Aligned_cols=175 Identities=12% Similarity=0.070 Sum_probs=112.2
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHH----HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLI----YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
-.-+.-+.+..-++.|+.+-.. . ..+......++ ..+.+.|++++|...|-+....- .|+ .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHH
Confidence 4567778888999999988763 2 23334444444 44557899999998886655432 221 24555
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
|....++..-..+++.+.+.|.. +..--..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777888889999888866 77777889999999999888777766544 2211 11234556666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
..+-..... +......++ -..+++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 655544322 233333333 3456777777776655
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.97 E-value=2.5 Score=33.48 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+.++.+++..++..+.-..+. ....-..-...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555443222 111111112223445555555555555443
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.83 E-value=2.9 Score=33.63 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.++++.+.+.+++|+...+..++..+.+.|++... ..++..++-+|.......+-.+.. ....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34445555566666666666666666666665443 333344445554444333322221 122222222223221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
=...+..++..+...|++-+|+++.+...... .++ ...++++-.+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01124455556666666666666665542211 111 12344444455554444444444433
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.83 E-value=2.5 Score=38.13 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhh
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPN---LISFNVMIKGRLKKGEWEEASRVFDEMLERE-----VPPTVVT 218 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 218 (491)
+|..+.+++-+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...... ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444455555545555555554443332 22221 1222335556666677777777777665421 1123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHH------HHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCCC
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPNAV------TYALLMEGLCFKGEYNEAKKMMFDMAY----RGCKP 284 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~ 284 (491)
+..|...|.+..|+++|.-+..+..+. ++. |.. ....+.-++-..|....|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777788888888888777666554432 221 211 112233445556666666666555443 23221
Q ss_pred -ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 285 -QLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 285 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
.......+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334566677777888888777776554
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.58 E-value=2.7 Score=32.58 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
..+.|++++|.+.|+.+..+-. +-...+--.++.+|.+.+++++|...+++.++.........|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3455666666666666655421 11334455566666666666666666666665533222234444444444
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.26 E-value=6 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cC----ChHHHHHHHHHHHhC
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLK--KG----EWEEASRVFDEMLER 210 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 210 (491)
++.+.+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3444555566666665555444432222221 11 234455566666554
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.02 E-value=8.5 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLEREVP-PTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445556666666666665543211 122344556666666666666666666554
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=5.2 Score=34.09 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..|.....+|....+++.|...+....+-. ..+...|. ....++.|.-+.+++.... --+..|+.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 345556667777788888888776665321 22333222 1234566666666666531 1234566677777
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh---CC--CCCChhhHHHHHHHHHhcCC
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE---RE--VPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~ll~~~~~~~~ 231 (491)
..+|.++.|-..+++.-+. .+..++++|+++|++... .+ ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777776666654321 122233444444443221 11 01112234445556666667
Q ss_pred hhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCCChhcHHHHHHHHHhcCChH
Q 041882 232 MGKAKGLFEDMIKK----GTYPNA-VTYALLMEGLCFKGEYNEAKKMMFDMAYRG---CKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 232 ~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
+++|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 76665555443211 111121 234445555666677777777777643322 123345555666655 456666
Q ss_pred HHHHHH
Q 041882 304 EAKSLL 309 (491)
Q Consensus 304 ~a~~~~ 309 (491)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 655554
No 272
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.97 E-value=8.6 Score=36.59 Aligned_cols=167 Identities=13% Similarity=0.201 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM 187 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 187 (491)
+.|.....+++..++...++.-.+.+-.+|...| -+-..|..++.+|..+ ..+.-..+|+++.+..+ |......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 5566777788888888888888888888888766 4677888888888888 55777888888877643 33333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREVP-----PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGL 261 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 261 (491)
+..+...++-+.+...|..+..+=++ .-...|.-+...- ..+.+....+..++... |...-...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33444447777788888777654221 0122455444321 35566677776666543 4444455666666778
Q ss_pred HhcCCHhHHHHHHHHHHHcC
Q 041882 262 CFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~ 281 (491)
....++++|++++..+.+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 88888888888888777664
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.94 E-value=5.2 Score=34.00 Aligned_cols=200 Identities=21% Similarity=0.104 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH-
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS- 294 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 294 (491)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122233344444444455555555555555555432221 111111122
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQY--KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-NAATYRMMVDGFLRVED 371 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 371 (491)
.+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666644211 1122333333333555667777777777766542 22 34556666666667777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 372 FEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++.+...+....... |+ ...+..+...+...|..+++...+++....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776642 32 333444444444566677777777776654
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.75 E-value=9.3 Score=36.37 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------------------
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD------------------ 141 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------ 141 (491)
..+|....+.++.+.-.+.-.+..+.+ +.-...|..|.. -......+|+++|++..+.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~-pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN-PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh-hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 455666667777777777766666654 212233332222 12344666666666654321
Q ss_pred ------CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 041882 142 ------CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP 214 (491)
Q Consensus 142 ------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 214 (491)
..+-..+-..+..++-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+..+...+.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 0011222244566677789999999999999865321 133466789999999999999999999976543332
Q ss_pred -ChhhHHHHHHHH
Q 041882 215 -TVVTYNSLIGFL 226 (491)
Q Consensus 215 -~~~~~~~ll~~~ 226 (491)
-...|+..+-.+
T Consensus 329 SAti~YTaALLka 341 (539)
T PF04184_consen 329 SATICYTAALLKA 341 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 244566655433
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.62 E-value=12 Score=37.32 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-------CCCCcCHHHHHHHHHHHHhCC-
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQH---YGKAHLVDKAIEVFNRMTS-------FDCVRTLQSFNSLLDILVDND- 160 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~- 160 (491)
...+.+.++...+.|. ........++.. +....+.+.|+.+|+...+ .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777776662 122222222222 3355678888888877755 33 3335555666666543
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChh
Q 041882 161 ----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK-KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLC--RTGEMG 233 (491)
Q Consensus 161 ----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 233 (491)
+...|..++.+.-+.| .|+...+-..+..... ..+...|.++|......|.. ....+..++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 4555777777766665 3344333222222222 23566777777777776643 2222222211111 223566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
.|..++++..+.|.. ....-...+..+.. +.++.+...+..+.+.|
T Consensus 382 ~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777777776622 22222222233333 56666665555555554
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.38 E-value=4.7 Score=32.03 Aligned_cols=50 Identities=14% Similarity=-0.033 Sum_probs=20.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 89 ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
.++.+++..++.-+.-.. |..+..-..-...+...|++.+|+.+|+++..
T Consensus 23 ~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344444444444444332 11222222222333444455555555544443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.33 E-value=0.35 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=19.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|..|...|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888754
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.24 E-value=2.7 Score=34.42 Aligned_cols=60 Identities=7% Similarity=0.023 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCK--ETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
.+..+...|.+.|+.+.|.+.|..+......+. ...+-.+|+.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555554432221 233445555555555555555554444
No 279
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=2 Score=37.85 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++++++.++..=++-|+.||.++++.++..+.+.+++.+|.++...|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45566666655556666666666666666666666666666555555443
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.11 E-value=6.7 Score=33.28 Aligned_cols=201 Identities=22% Similarity=0.160 Sum_probs=110.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLME- 259 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 259 (491)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122234444555555555555666666666655543222 111111222
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCC--CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 260 GLCFKGEYNEAKKMMFDMAYRGC--KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666667777666666644211 0122223333333556677777777777776653221355666677777777778
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 338 AEAYKVLTEMQIGGCKPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.+...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888777664 233 334444444444666788888888777775
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.08 E-value=5.4 Score=32.10 Aligned_cols=30 Identities=7% Similarity=0.246 Sum_probs=14.6
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChH
Q 041882 169 FDDADKMGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
++.+.+.++.|+...+..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333344445555555555555555555433
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.05 E-value=4.7 Score=31.33 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 85 KLARARDFDAVETVLGYIQDFN--IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
...+.|+++.|.+.|+.+..+- .+-.....-.++.+|.+.+++++|...+++..+..+...-..|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3445666666666666666542 122334455566666666666666666666655543222233444444433
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.01 E-value=2.9 Score=34.25 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTS---RHCPRLETFSC 396 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 396 (491)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.++... +-+++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777788888888888888887765433333 34556677777778888877777666553 21122111111
Q ss_pred HH--HHHHcCCCHHHHHHHHHHHH
Q 041882 397 LL--VGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 397 l~--~~~~~~g~~~~a~~~~~~~~ 418 (491)
.. -++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22345678888777776654
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.99 E-value=1.4 Score=31.21 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++-.+.+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44555555555566677777777777777777777777777766633 1113345555554
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.96 E-value=9.4 Score=34.64 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=115.8
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhc
Q 041882 122 GKAHLVDKAIEVFNRMTSF--DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPN---LISFNVMIKGRLKK 194 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~ll~~~~~~ 194 (491)
....+.++|+..|.+.... +......++..+..+.++.|.+++++..--.-+.. ...-. -..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888877776542 11112345666777777777776665543222111 00111 12333444444444
Q ss_pred CChHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcC
Q 041882 195 GEWEEASRVFDEMLER-EVPP---TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-----YPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~ 265 (491)
-++.+++.+-..-... |..| .-....++..++.-.+.++++++.|+...+... .....++..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544443332 2222 112334455666666777778777777664311 112345667777777777
Q ss_pred CHhHHHHHHHHHHH----cCCCCChhcHHH-----HHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAY----RGCKPQLVNFGV-----LMSDLGKRGKIEEAKSLLSEMKK----RQYKP-DVVTYNILINYL 331 (491)
Q Consensus 266 ~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~ 331 (491)
|+++|.-+.....+ .++..-...|.. +.-++...|....|.+.-++..+ .|-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 77777766554433 222111122222 23344556666666666665543 22111 122344556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 041882 332 CKEDRAAEAYKVLTEM 347 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~ 347 (491)
...|+.+.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6777777777666654
No 286
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.89 E-value=8.4 Score=33.92 Aligned_cols=137 Identities=9% Similarity=0.158 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHhhh-CCCCcCHHHHHHHHHHHHhC-C-ChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 125 HLVDKAIEVFNRMTS-FDCVRTLQSFNSLLDILVDN-D-RVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
..+.+|+.+|+.... ..+-.|..+...+++..... + ....-.++.+-+... +-.++..+...++..+++.+++...
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663322 22344666666666666652 2 222223333333322 3456677777788888888888888
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 041882 201 SRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFED-----MIKKGTYPNAVTYALLMEGL 261 (491)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 261 (491)
.++++..... +...|...|..+|+.-...|+..-...+.++ +...++..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8887776554 4555777888888888888887776666654 23345555555555444443
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.44 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.63 E-value=21 Score=37.95 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh--cHHHHHHHHHh
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV--NFGVLMSDLGK 298 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 298 (491)
+....+.....+++|--.|+..-+. .-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3334444556666666666554321 23456667777777777766655421 1111 11345555566
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLT 345 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 345 (491)
.++.-+|-++..+.... ....+..|++...+++|.++..
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 66666666666555442 1122333444445555555443
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.37 E-value=6.5 Score=31.58 Aligned_cols=123 Identities=12% Similarity=-0.033 Sum_probs=50.2
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHH--HHHHHHhcCCH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKET-LFIS--LIQHYGKAHLV 127 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~ 127 (491)
.+.+..++|+.-|..+..-|...-+. ..-.......+.|+-..|...|+.+-.....|-.. -... -.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44455555555555555444221111 11112223344555555555555554432222111 0000 11122344555
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+....-.+.+...+-+.....-..|.-+..+.|++..|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55444444443333222233334444444455555555555555443
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=3.9 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh
Q 041882 210 REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG---TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL 286 (491)
Q Consensus 210 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (491)
.|.+.+..+...++..-....+++.++..+-++.... ..|+...+ .++.. +..-+..+++.++..-+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 3555566677777776667788999998888877541 12222222 22222 3344667999999999999999999
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
++++.+++.+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776653
No 291
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.00 E-value=10 Score=33.35 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHH-CCCCCCHHhHHHHHHHHHh-cC-ChHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 162 VDDAKRMFDDADK-MGFRPNLISFNVMIKGRLK-KG-EWEEASRVFDEMLE-REVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 162 ~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..+|+++|+.... ..+--|......+++.... .+ ....-.++.+.+.. .+-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233355555566655554 21 22222333333332 2344566677777777777777777777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH-----HHHcCCCCChhcHHHHHHHH
Q 041882 238 LFEDMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFD-----MAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 296 (491)
+++..... +..-|...|..+|+.....|+..-...+..+ +.+.++..+...-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77776654 4555677777777777777777666655543 23345555554444444433
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.73 E-value=6.7 Score=30.64 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.9
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
...|+|++|.++|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555555543
No 293
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.68 E-value=4.1 Score=29.29 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
+..+-+..+....+.|++.+..+.+++|.+.+++..|.++++-++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 34455555555666677777777777777777777777777777643 2222225555554
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.56 E-value=14 Score=34.17 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP---NAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...+|..++..+.+.|+++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45577888888888899998888888887643111 333444445666677888888888888877
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=21 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=38.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIR-CKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
+.-+.+.+.+++|+++.+.....-.. .........+..+.-.|++++|-...-.|.. -+...|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 33444555566665555444332100 0234455556666666666666666655554 244455555555555444
Q ss_pred h
Q 041882 162 V 162 (491)
Q Consensus 162 ~ 162 (491)
.
T Consensus 439 l 439 (846)
T KOG2066|consen 439 L 439 (846)
T ss_pred c
Confidence 3
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.33 E-value=0.44 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.05 E-value=12 Score=32.45 Aligned_cols=200 Identities=15% Similarity=0.190 Sum_probs=114.7
Q ss_pred CCCcCHHHHHHHHHHH-HhCCChhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 041882 141 DCVRTLQSFNSLLDIL-VDNDRVDDAKRMFDDADKMGFRPNL---ISFNVMIKGRLKKGEWEEASRVFDEMLER---EV- 212 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~- 212 (491)
+..||+..=|..-..- .+..++++|+.-|.+..+....-.. .....++....+.+++++....|.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456655444332221 1234688888888888765322223 33445677788888888888888877542 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNA----VTYALLMEGLCFKGEYNEAKKMMFDMAYRG---- 281 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 281 (491)
.-+..+.|+++..-+...+.+.-.++|+.-.+. ... +. .|-.-+...|...+.+....++++++...-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124556677777777667766666666654322 001 11 122345566777777888888877776541
Q ss_pred CCCC-------hhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 041882 282 CKPQ-------LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPDVVTYNILINYL-----CKEDRAAEAYK 342 (491)
Q Consensus 282 ~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~~~~~~a~~ 342 (491)
...| ...|..-|..|....+-.....+|++.... ..-|.+.... +|+-| .+.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 1111 234566677777777777777777765432 2334444433 33333 35677777643
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.88 E-value=14 Score=33.16 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCC----HhHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCC---
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCF--KGE----YNEAKKMMFDMAYRGC---KPQLVNFGVLMSDLGKRGK--- 301 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~--- 301 (491)
+...+++.|.+.|+.-+..+|-+....... ..+ ...+..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666555555442222221 112 3345566666665431 1223334444322 2222
Q ss_pred -hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041882 302 -IEEAKSLLSEMKKRQYKPDV--VTYNILINYLCKEDR--AAEAYKVLTEMQIGGCKPNAATYRMM 362 (491)
Q Consensus 302 -~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (491)
.+.++.+|+.+.+.|...+- .....++...-.... ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555554443321 222222221111111 33555566666666655555544433
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.87 E-value=0.48 Score=26.31 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a 130 (491)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333333333333333333
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.78 E-value=8.2 Score=30.18 Aligned_cols=53 Identities=13% Similarity=-0.008 Sum_probs=35.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
..++.+++..+++.+.-.. |.....-..-...+...|++.+|+++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4677888888888777654 2233333333445577888888888888887754
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.66 E-value=5.8 Score=28.57 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666666666666666544
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.63 E-value=21 Score=34.77 Aligned_cols=339 Identities=13% Similarity=0.101 Sum_probs=202.2
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 60 ALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 60 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
.+..++.... -..+...++.++.---...+.+.+..++..+...- |.--..|......=.+.|..+.+..+|++...
T Consensus 31 ~~~~we~~~~--~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ 107 (577)
T KOG1258|consen 31 SLDYWEILSN--DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ 107 (577)
T ss_pred hhhHhhcccc--chhcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444332 23455567777766555566677888888887653 44445567777777889999999999999876
Q ss_pred CCCCcCHHHHHHHHHHHHh-CCChhhHHHHHHHHHHC-CCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 140 FDCVRTLQSFNSLLDILVD-NDRVDDAKRMFDDADKM-GFR-PNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
+++.+...|...+..+.. .|+.+...+.|+..... |.. -+...|...|..-...+++.....+++++.+. ..
T Consensus 108 -aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~ 182 (577)
T KOG1258|consen 108 -AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PL 182 (577)
T ss_pred -hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hh
Confidence 356688888887776655 47788888888888765 321 24567888888888899999999999999885 22
Q ss_pred hhHHHHHHHHHh---------cCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH------------------------
Q 041882 217 VTYNSLIGFLCR---------TGEMGKAKGLFEDMIKK----GTYPNAVTYALLME------------------------ 259 (491)
Q Consensus 217 ~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~------------------------ 259 (491)
..++..-.-|.+ ....+++.++-...... ...........-+.
T Consensus 183 ~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 183 HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHE 262 (577)
T ss_pred hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHH
Confidence 233332222221 12233333333222210 00001111111111
Q ss_pred -HHHhcCCHhHHHHHHHHHHHc---CC----CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 260 -GLCFKGEYNEAKKMMFDMAYR---GC----KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 260 -~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (491)
.+............++.-++. .+ .++..+|..-+..-...|+.+.+.-+|++..-- ...-...|--.+.-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHH
Confidence 111122222222223322222 11 223566777788888899999999999887642 111334455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHcCCCHH
Q 041882 332 CKEDRAAEAYKVLTEMQIGGCKPN--AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL-ETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 408 (491)
...|+.+-|..++....+--++-. ...+.+. -+-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 566888888888776655433322 2222222 2345689999999999998863 443 23333445566788888
Q ss_pred HHH
Q 041882 409 DAC 411 (491)
Q Consensus 409 ~a~ 411 (491)
.+.
T Consensus 418 ~~~ 420 (577)
T KOG1258|consen 418 DAN 420 (577)
T ss_pred hhh
Confidence 887
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.46 E-value=18 Score=34.17 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=80.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
-+......||...|-+-+....+.. +.++.........+...|+++.+...+...... +.....+...+++...+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3444556677776654444444332 233333333344456778999888887766443 12345577788888888899
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV 212 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 212 (491)
+++|..+-.-|....+. +...........-..|-++++...++++...+.
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99999988888876654 444444444445556778888888888776543
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.32 E-value=27 Score=35.42 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=86.2
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCCCHH---HHH
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD-------FDAVETVLGYIQDFNIRCKET---LFI 115 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~---~~~ 115 (491)
+++--+.+.|+.++|+++....... .......+...+..+....+ -+....-|+...+.....|+. +|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5777889999999999999555432 34444567777777766432 224444555554443222332 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH--HHHHHHHHHHhCCC---------hhhHHHHHHHHHHCCCCCCHHhH
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ--SFNSLLDILVDNDR---------VDDAKRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~p~~~~~ 184 (491)
.+ +++.-...-. . .+..+.+ .|-.|..+-..... .+...+.+.+.-+..+.+ ....
T Consensus 195 il----g~cD~~~~~~------~--~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 195 IL----GRCDLSRRHL------P--EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HH----HT--CCC-S-------T--TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HH----hcCCccccch------H--HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 22 2221100000 0 1111222 22222221111111 112222222222222333 1112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYPNAVTYALLMEGLCF 263 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~ 263 (491)
-.....+.-.|+++.|.+.+-. ..+...+..++.+.+..|.-.+-.+... ..+.... -.|...-+..+|..|.+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 2344556678899999988876 1223335555555554443222222211 2222211 11112456777777765
Q ss_pred ---cCCHhHHHHHHHHHHHc
Q 041882 264 ---KGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 264 ---~~~~~~a~~~~~~~~~~ 280 (491)
..+...|.+++-.+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 34667777777665544
No 305
>PRK09687 putative lyase; Provisional
Probab=89.23 E-value=16 Score=32.68 Aligned_cols=135 Identities=16% Similarity=0.016 Sum_probs=68.3
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-RAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
+..+-...+.++++.++ ..+...+-.+.+. ++..+-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444455555555555 3344444444432 34444444455555432 13345555555543 45556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTD 435 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 435 (491)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||...-...+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 666666663 4554444444432 2 223556666666664 566666666653 2355444444443
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.19 E-value=4.1 Score=28.95 Aligned_cols=47 Identities=4% Similarity=0.080 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
.-++++-++.+......|++.+..+.+++|.+.+++..|.++|+-++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555555555666666666666666666666666666554
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.13 E-value=12 Score=31.32 Aligned_cols=67 Identities=18% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
|.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.+-+.+.-..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 3345677777777777777777777777777755332222222222 222346677666666555443
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.97 E-value=0.42 Score=37.61 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....+..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .-...++.
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~ 78 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALR 78 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHH
Confidence 34556778888999999999999999999777667788889999999999887877777762111 22234566
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 041882 120 HYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~ 137 (491)
.|.+.|.+++|.-++.++
T Consensus 79 ~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHTTTSHHHHHHHHHCC
T ss_pred HHHhcchHHHHHHHHHHc
Confidence 667777777777666654
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=11 Score=30.25 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI-SFNVM 187 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l 187 (491)
+...|...+.. ++.+..++|+.-|..+.+.|...- +-.--.........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44555555553 566788888888888887664411 1122233445667788888888888876653333322 11111
Q ss_pred H--HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041882 188 I--KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP 249 (491)
Q Consensus 188 l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (491)
= -.+...|.++.+..-.+-+...+-+.-...-..|.-+-.+.|++.+|..+|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 1345678888888877777666555555566677777788888888888888887653333
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.25 E-value=25 Score=33.73 Aligned_cols=177 Identities=11% Similarity=0.031 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 250 NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
|.....+++..+..+..+.-++.+-.+|...| .+...+..++..|... ..+.-..+|+++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444555555666666666666666665553 3444555555555555 345555566666555443 4444444554
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHc
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKP-----NAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 403 (491)
.|-+ ++...+..+|.++...-++. -...|..+... -..+.+....+..++... |...-...+.-+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 55555555555554432110 01123322221 124455555555555543 333334455555566666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
..++++|++++..+.+.+ .-|...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 777777777777666543 224444444444
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.82 E-value=1.6 Score=23.93 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
..+..+|...|++++|+..|++..
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333333444444444444444333
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.63 E-value=1.5 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 391 LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888764
No 313
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=40 Score=35.26 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHH--
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLCRTGEM--GKAKGLFEDMIKKGTYPNAVTYA-- 255 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 255 (491)
-|..|+..|...|+.++|++++.+..... -.--...+..++..+...+.. +-++++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46777888888888888888888776632 011112233345555554444 44444444444331111000111
Q ss_pred ----------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 256 ----------LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 256 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233456777788888888888776656667777777777664
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.52 E-value=18 Score=30.36 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=90.6
Q ss_pred CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-cCHHHH
Q 041882 72 SKHS-YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV-RTLQSF 149 (491)
Q Consensus 72 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 149 (491)
+.|+ +..||.+.-.+...|+++.|.+.|+...+.+..- ..++..-.-.+---|+++-|.+-|.+.-..+.. |-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4444 5679999999999999999999999999886332 333332233334568999998877776554321 222233
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT-------VVTYNSL 222 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l 222 (491)
--+. -..-++.+|..-+.+--+ ..|..-|...|-.+.- |.+. ...+++++..- -.-+ +.||--+
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 2222 233455566544332211 2344445443333221 1111 12233333321 1111 3355566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+-+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66777777888888777776654
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.43 E-value=72 Score=37.13 Aligned_cols=152 Identities=7% Similarity=0.072 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
.+..+-.+++.+.+|...+++-..... ......|-.+...|..-+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 445566788999999999998421111 11233444455599999999998888774221 22223 34445677
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHhHHHH
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL-LMEGLCFKGEYNEAKK 272 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 272 (491)
.|++..|...|+.+.+.+.. ...+++-++..-...|.++.++...+-.... ..+....++. =+.+--+.++||....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999987532 4667887777777788888887766665543 2222222322 2344466777777666
Q ss_pred HHH
Q 041882 273 MMF 275 (491)
Q Consensus 273 ~~~ 275 (491)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.25 E-value=8.9 Score=31.80 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHH
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER---EVPPTVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
.-+.|.+.|-++...+.--++.....|.. |....+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34678888888877764445444444444 44466788888888877653 33678888999999999999988875
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.08 E-value=2.4 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
.+|..+..++...|++++|+..|++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 456667777777888888887777765
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.81 E-value=2.2 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.72 E-value=14 Score=30.68 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCh
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM---GFRPNLISFNVMIKGRLKKGEW 197 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~ 197 (491)
+.+.|+ +.|.+.|-++...+..-++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 567888888877765545555555555554 77889999998887765 3367889999999999999999
Q ss_pred HHHH
Q 041882 198 EEAS 201 (491)
Q Consensus 198 ~~a~ 201 (491)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.18 E-value=26 Score=30.93 Aligned_cols=57 Identities=16% Similarity=0.048 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
+...+.|..+|.+.+|.++.+..++.. +.+...+..++..+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334444555555555555555554432 224444455555555555544444444333
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.09 E-value=2.7 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=8.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 041882 397 LLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444433
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.93 E-value=2.9 Score=22.72 Aligned_cols=26 Identities=8% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
.+..+...+...|++++|++.|++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566677777788888887777664
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.64 E-value=46 Score=33.29 Aligned_cols=246 Identities=14% Similarity=0.060 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHH----HH-HHhcCChHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMI----KG-RLKKGEWEEASRVFDEMLE-------REVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 229 (491)
...+.++++...+.|. ...-..+. .+ +....+.+.|..+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4578888888777652 22222222 22 4466789999999998876 44 344566777777764
Q ss_pred C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH--hcCC
Q 041882 230 G-----EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG--KRGK 301 (491)
Q Consensus 230 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~ 301 (491)
. +.+.|..++...-..|.+ +...+...+.-... ..+...|.++|......|. ++...+.+++-... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 567799999988887654 44333332222222 2467889999999888873 22222222222111 2346
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH---Hh----cCCHH
Q 041882 302 IEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM-VDGF---LR----VEDFE 373 (491)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~---~~----~~~~~ 373 (491)
...|..++++..+.|. |...--...+..+.. ++++.+.-.+..+.+.|... ..+-... +... .. ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 8889999999888872 232222222333333 77777777777666655322 1111111 1111 11 22455
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHCC
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKG----GKVDDACFVLEEMEKRK 421 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 421 (491)
.+...+.+....| +......+.+.|... .+++.|...+......+
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 6666666666554 344445555554432 34777777777777664
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.54 E-value=2.6 Score=24.29 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.87 E-value=53 Score=33.38 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCC-----HHhHHHHHH--HHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 041882 368 RVEDFEGSLKVLNAMLTSRH-CPR-----LETFSCLLV--GLLKGGKVDDACFVLE--------EMEKRKMRFDLKAWEG 431 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 431 (491)
-.+++..|...++.+.+..- .|+ ...+..++. .+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888888876411 111 122223333 3345688999999997 4445555545444444
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.31 E-value=0.67 Score=36.46 Aligned_cols=53 Identities=8% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444455544443333334444555555555544444444443
No 327
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.20 E-value=22 Score=31.21 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=45.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR--- 228 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 228 (491)
=|.+++..++|.+++...-+.-+..-+.-......-|-.|.+.+++..+.++-.......-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36666777777777666555443211112223333344566666666666666665554222233345555554433
Q ss_pred --cCChhHHHHHH
Q 041882 229 --TGEMGKAKGLF 239 (491)
Q Consensus 229 --~~~~~~a~~~~ 239 (491)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666665555
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.60 E-value=2.4 Score=21.70 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~ 415 (491)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.59 E-value=27 Score=29.03 Aligned_cols=94 Identities=9% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
.=..-+...|+++.|..-|...+..-.+.. ...|..-..++.+.+.++.|+.--.+..+.+.. ...+...-..+|
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 335567789999999999998887653222 234566667788899999999988888876532 333444445678
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
.+...+++|+.-|+++.+.
T Consensus 179 ek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh
Confidence 8888899999999998876
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.31 E-value=12 Score=31.35 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=19.0
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLG 100 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (491)
.|.+.++.++|+...+.-.+.. +.|...-..+++.++-.|+|++|..-++
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344444444444443333322 2222233333444444444444443333
No 331
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.57 E-value=67 Score=32.30 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
...++.+..+-...+.....-++..|.+.|-.+.+.++.+.+-.+-. ...-|...+..+.+.|+...+..+...+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444432233344455666777777777777777766544322 223455666667777777666666555543
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.42 E-value=5.4 Score=21.66 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888777765
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.30 E-value=32 Score=28.45 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM-----MVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
...+...+++++|..-++..... |....+.. +.+.....|.++.|...++...+.++ .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566677788887777766542 33333333 33455567778888777776665442 2333444556777
Q ss_pred cCCCHHHHHHHHHHHHHCC
Q 041882 403 KGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~ 421 (491)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7888888888888777664
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.00 E-value=27 Score=27.38 Aligned_cols=89 Identities=10% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---C--CCCHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSR---H--CPRLETFSCLLVGLLKGGK-VDDACFVLEEMEKRKMRFDLKAWEGL 432 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (491)
.+.++.-...-+++.....+++.+.... + ..+...|..++.+..+..- --.+..+|+-|.+.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555566666666666553321 0 1355678889988876665 44577888999988889999999999
Q ss_pred HHHHHhcCCCcchhHH
Q 041882 433 VTDACIGDGNAGGLVE 448 (491)
Q Consensus 433 l~~~~~~~~~~~~~~~ 448 (491)
+.+ |..|...+.+..
T Consensus 122 i~~-~l~g~~~~~~~f 136 (145)
T PF13762_consen 122 IKA-ALRGYFHDSLYF 136 (145)
T ss_pred HHH-HHcCCCCcchHH
Confidence 996 666665555533
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.73 E-value=3.2 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 396 CLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+..++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555556666666666666654
No 336
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.73 E-value=50 Score=30.29 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCHHhHHHHHHHHHhcC------------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 73 KHSYPSYASLIYKLARAR------------DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+-|..+|-.++..--..- -.+.-+.+++++.+.+ +.+......++..+.+..+.+...+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556666666664432221 1345567777777775 567777777888888777778777888887775
Q ss_pred CCCcCHHHHHHHHHHHHhC---CChhhHHHHHHHH
Q 041882 141 DCVRTLQSFNSLLDILVDN---DRVDDAKRMFDDA 172 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 172 (491)
... +...|...|...... -.++....+|.+.
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 422 666777666655442 2345555555544
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.58 E-value=41 Score=29.31 Aligned_cols=326 Identities=12% Similarity=0.136 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHH---HHHHHHHHHHhCCChhhHHHHHHHHHHC---CC--CCCHHhHHHHHHHHHhc
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQ---SFNSLLDILVDNDRVDDAKRMFDDADKM---GF--RPNLISFNVMIKGRLKK 194 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~ll~~~~~~ 194 (491)
+..++++|+.-|++..+.......+ +...++....+.+++++....|.++... .+ .-+..+.|.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3446777888787776653333333 3455677777888888877777776432 11 22455667777776666
Q ss_pred CChHHHHHHHHHHHhC-CCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHH
Q 041882 195 GEWEEASRVFDEMLER-EVPPTVV----TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-----------PNAVTYALLM 258 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~-~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ll 258 (491)
.+.+.....|+.-.+. .-..+.. |-..|...|...+++.+..++++++.+.--. --...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666665555543221 0001222 2245677778888888888888877643110 0134566667
Q ss_pred HHHHhcCCHhHHHHHHHHHHHc-CCCCChhcHHHHHHH-----HHhcCChHHHHHHH-HHHHH---cCCCCCHHH---HH
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYR-GCKPQLVNFGVLMSD-----LGKRGKIEEAKSLL-SEMKK---RQYKPDVVT---YN 325 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~-~~~~~---~~~~~~~~~---~~ 325 (491)
..|....+-.....++++.... ...|.+.... +|+- ..+.|.+++|..-| +.... .|. |...+ |-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHH
Confidence 7777777777777777765542 1234443332 3333 34567777765443 33332 222 22222 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 326 ILINYLCKEDRAAEAYKVLTE--MQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
.+...+.+.|- .-|+. ..--.-.|.....+.++.+|.+ +++.+-.+++..-.. ++..|+.+-. -+.-+.+
T Consensus 277 VLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFIRe-h~EdLl~ 348 (440)
T KOG1464|consen 277 VLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFIRE-HIEDLLR 348 (440)
T ss_pred HHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHHHH-HHHHHHH
Confidence 33333333320 00000 0000113455566777777754 455554444443222 2333433322 2222222
Q ss_pred CCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhh
Q 041882 404 GGKVDDACFVLEEM-------EKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMA 458 (491)
Q Consensus 404 ~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~ 458 (491)
.=+..--+++.+-. ....+..+..-...|+-.+.-....+..+.+...+...+-.
T Consensus 349 niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~ 410 (440)
T KOG1464|consen 349 NIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKS 410 (440)
T ss_pred HHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCcc
Confidence 22222222222221 11123334444555555445555567777777777766543
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.25 E-value=84 Score=32.65 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=120.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVV-------TYNSLIG-FLCRTGEMGKAKGLFEDMIKK----GTYPNAVTYALLME 259 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 259 (491)
....++++|..++.++...-..|+.. .|+.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34578899999998877653232222 2333322 233568899999988887754 12334556677777
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH-----HHHHHhcCCh--HHHHHHHHHHHHc---CCC---CCHHHHHH
Q 041882 260 GLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL-----MSDLGKRGKI--EEAKSLLSEMKKR---QYK---PDVVTYNI 326 (491)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ 326 (491)
+..-.|+++.|..+..+..+..-..+...+... ...+..+|+. .+.+..|...... ... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888776654323333333222 2234456632 3333334433322 111 11233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHhHHH
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGG--CKPNA--A--TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC----PRLETFSC 396 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 396 (491)
+..++.+ .+.+..-...-.+.| ..|.. . .+..++......|+.++|...+.++...... ++......
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4455544 333332222211111 12222 1 2235667778899999999998888765222 23222233
Q ss_pred HHHH--HHcCCCHHHHHHHHHH
Q 041882 397 LLVG--LLKGGKVDDACFVLEE 416 (491)
Q Consensus 397 l~~~--~~~~g~~~~a~~~~~~ 416 (491)
.+.. -...|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 3467888888777666
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.13 E-value=19 Score=30.33 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=51.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG--GCKPNAATYRMMVDG 365 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 365 (491)
+.+..++.+.+.+.+.+++...+.-++.++. |...-..+++.++-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455566777888888888888777776544 6666677788888888888887766655442 123334556666554
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.11 E-value=16 Score=27.58 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 378 VLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+..+...++.|++.+...-+++|.+.+++..|.++|+-++.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444555555555566666666666666666655553
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.04 E-value=6 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666655544
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.70 E-value=33 Score=33.63 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=67.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
..+.|+++.|..+..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777777665542 566788888888888888888888876553 44566666777777766
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
..+-....+.|. .|....+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 666666666552 233344566778888887776543
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.18 E-value=38 Score=28.05 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHH----
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFI--SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSF---- 149 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 149 (491)
...|..++.... .+.. ......+.+...+....-.++. .+...+...+++++|+.-++..... +....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345666665543 3333 4444455555433111111222 2344567788888888888876653 222233
Q ss_pred -HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 150 -NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 150 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
-.|.+.....|.+++|+..++.....+. .......--+.+...|+-++|..-|+...+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3345666777888888888887766532 23334455567888888888888888887764
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.16 E-value=6.1 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444444444444444444443
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.34 E-value=41 Score=28.00 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041882 365 GFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~ 384 (491)
+|.+...++.|++-|+++.+
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.16 E-value=59 Score=29.78 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 041882 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR---VEDFEGSLKVLN 380 (491)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~ 380 (491)
.-+.+++++.+.++. +...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 334445554444332 44445555555555555555555555555432 2234444444443222 123444444444
Q ss_pred HHHhC------CC------CCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 381 AMLTS------RH------CPR-----LETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 381 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
+.+.. +. .++ ..++..+...+..+|..+.|..+++.+.+..+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33321 10 000 01222223334456777777777766665543
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.07 E-value=91 Score=31.86 Aligned_cols=77 Identities=4% Similarity=-0.053 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 115 ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 115 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
...+..+.+.+++...+.++.. .+.+...-.....+....|+.++|......+-..| ......++.++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3344444555555555542211 12344444555556666666555555555443333 22344455555555544
Q ss_pred CCh
Q 041882 195 GEW 197 (491)
Q Consensus 195 ~~~ 197 (491)
|..
T Consensus 177 g~l 179 (644)
T PRK11619 177 GKQ 179 (644)
T ss_pred CCC
Confidence 443
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.33 E-value=25 Score=31.81 Aligned_cols=89 Identities=13% Similarity=-0.070 Sum_probs=49.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAA 338 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 338 (491)
.-|.+.|.+++|++.|....... +.+.+++..-..+|.+...+..|+.-.......+-. -...|+.-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 34677777788877777766542 336677777777777777777666666555543110 1222333333333344444
Q ss_pred HHHHHHHHHHh
Q 041882 339 EAYKVLTEMQI 349 (491)
Q Consensus 339 ~a~~~~~~~~~ 349 (491)
+|-+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 44444444443
No 349
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.31 E-value=90 Score=31.41 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
.|..-+..+..+++.. ....+.+..+-+-.+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|...+.-+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHH
Confidence 3444444444443322 4444555444333455566667777777777777777776654321 12234555555666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 041882 368 RVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~ 384 (491)
++|+......+...+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666665555555543
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.95 E-value=1.7e+02 Score=34.43 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=74.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND 160 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 160 (491)
..+-.+.+.+..|...++.-..... ......+..+...|+..++++...-+...-.. +... ..-|......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHhhc
Confidence 3344456667777766666311110 11223344445577777777766655543111 1112 22334445567
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHH
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL-IGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~ 239 (491)
+++.|...|+.+...+ ++...+++.++......|.++.+.-..+-.... ..+....|+.+ +.+--+.++++......
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 7777777777777653 223556666666666666666666544444332 11122222222 22334555555555444
Q ss_pred H
Q 041882 240 E 240 (491)
Q Consensus 240 ~ 240 (491)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 3
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.60 E-value=1.1e+02 Score=31.95 Aligned_cols=225 Identities=16% Similarity=0.063 Sum_probs=120.7
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHH-------hHHHHHH-HHHhcCChHHHHHHHHHHHhC----CCCCChhhHHHHHH
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNLI-------SFNVMIK-GRLKKGEWEEASRVFDEMLER----EVPPTVVTYNSLIG 224 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 224 (491)
....++++|..++.++...-..|+.. .++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44688999999998886653233221 2333322 233568889999888877653 22334556677778
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCCHh--HHHHHHHHHHHcC---CC---CChhcHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLM-----EGLCFKGEYN--EAKKMMFDMAYRG---CK---PQLVNFGV 291 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~~---~~---~~~~~~~~ 291 (491)
+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+.. +....+....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776642222333333222 2244556332 2223333222211 01 12233444
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 041882 292 LMSDLGKR-GKIEEAKSLLSEMKKRQYKPDVVT--YNILINYLCKEDRAAEAYKVLTEMQIGGCK----PNAATYRMMVD 364 (491)
Q Consensus 292 ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 364 (491)
++.++.+. +...++..-+.--......|-... +..|+..+...|+.++|...+.++...... ++..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555541 111122222222222222222222 236677778899999999999988764322 22222223333
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 041882 365 --GFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 365 --~~~~~~~~~~a~~~~~~ 381 (491)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 33457888887776655
No 352
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.48 E-value=25 Score=26.60 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 340 AYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
..+-+..+..-.+.|++......+++|.+.+|+..|.++|+-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555667788888888888888888888888888877664
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.30 E-value=58 Score=28.74 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH-HHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETF-SCLL 398 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 398 (491)
++.....+...|.+.+++.+|...|-. +-.++...+..++..+...|... +...| ...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~----------------e~dlfi~RaV 148 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPS----------------EADLFIARAV 148 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS------------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCc----------------chhHHHHHHH
Confidence 667777788888888888877765532 11222222222332222222222 22222 2233
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC-------------CCCCCH--HHHHHHHHHHHhcCCCcchhHHHHHHhhh--hhhhhh
Q 041882 399 VGLLKGGKVDDACFVLEEMEKR-------------KMRFDL--KAWEGLVTDACIGDGNAGGLVEIRDMRDY--SMAISS 461 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~~m~~~--~~~~~~ 461 (491)
--|...|+...|...++...+. ++.++. ..|-.++-..|..+.. ..+..+.+--+. ..+|.-
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~-~~F~~L~~~Y~~~L~rd~~~ 227 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL-PLFKKLCEKYKPSLKRDPSF 227 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H-HHHHHHHHHTHH---HHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH-HHHHHHHHHhCccccccHHH
Confidence 3455677888888877776644 222232 2233333334665542 222222221111 123667
Q ss_pred hHHHHHHHHHhcCCC
Q 041882 462 VMNVVDLLWTYLGMG 476 (491)
Q Consensus 462 ~~~~~~l~~~~~~~g 476 (491)
...++.+|..|+...
T Consensus 228 ~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 228 KEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCC
Confidence 788999999998855
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.13 E-value=31 Score=28.14 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHH---HHhcCChhHHHHHHH-------HHHhcCCCCCHHHHHHHHHHHHh
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYK---LARARDFDAVETVLG-------YIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
+.|.+.++.-...+ +.|...++.-..+ +++..+..++.++++ ..+..+ |....++..+..++..
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 44555555433333 4555544433333 333334334444443 333333 2233555555555544
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.65 E-value=14 Score=22.46 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 401 LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777777777777777777777766664
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.20 E-value=50 Score=27.00 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCH
Q 041882 340 AYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVE-----------DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKV 407 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (491)
|..-|++.+. +.|+. .++..+..++...+ .+++|...|+++.. ..|+..+|..-+...
T Consensus 54 AisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------ 123 (186)
T PF06552_consen 54 AISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------
T ss_pred HHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------
Confidence 3333444433 34554 45666655555432 25556666666666 458888888777665
Q ss_pred HHHHHHHHHHHHCCC
Q 041882 408 DDACFVLEEMEKRKM 422 (491)
Q Consensus 408 ~~a~~~~~~~~~~~~ 422 (491)
++|-++..++.+.+.
T Consensus 124 ~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 AKAPELHMEIHKQGL 138 (186)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHHHh
Confidence 346777777776654
No 357
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.02 E-value=58 Score=32.10 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=88.0
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+.+..-+..+|-.++|+++- +|+.- -.....+.|+++.|.++..+.. +..-|..|.++....
T Consensus 618 t~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 44555566677777777653 22211 1334557788888887765432 456688899999999
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |...-+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 999999998876653 456777777788877777776666666622 23334566788999888887
Q ss_pred HHH
Q 041882 205 DEM 207 (491)
Q Consensus 205 ~~~ 207 (491)
..-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 553
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.91 E-value=23 Score=32.00 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=60.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
...|.++|.+++|.++|....... +.++.++..-..+|.+..++..|+.-.......+ ..-+.+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788999999999998877765 5588888888888888888887776655554432 11223344444444444555
Q ss_pred hhHHHHHHHHHHCCCCCC
Q 041882 163 DDAKRMFDDADKMGFRPN 180 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~ 180 (491)
.+|.+-++..++. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 5555555555543 455
No 359
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.79 E-value=93 Score=29.94 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=64.4
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH----
Q 041882 331 LCKEDRAAEAYKVLTEMQI---GGCKPNAA-----TYRMMVDGFLRVEDFEGSLKVLNAMLT-------SRHCPRL---- 391 (491)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 391 (491)
+.-.|++.+|.+++...-- .|...++. .++.+...+.+.|.+..+..+|.++++ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3456888888887764321 12222221 224444445566777777777776663 3444321
Q ss_pred -------HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 392 -------ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 392 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
.+|+ ..-.|...|++-.|.+.|.+.... +.-++..|-.|..+|
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 1222 344577889999999999988865 667889999988853
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.44 E-value=62 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=24.8
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 041882 389 PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL 426 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (491)
|.+.....++..|. .+++++|.+++.++.+.|+.|..
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 55555555555554 45778888888888888777653
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.49 E-value=22 Score=29.67 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 387 HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
..|+..+|..++.++...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578888888888888888888888888877753
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.83 E-value=81 Score=28.06 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445555666666666666555542 2344555555556666666555555555443
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.80 E-value=84 Score=29.99 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhc
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPS--YASLIYKLARARDFDAVETVLGYIQDFNIRCKET--LFISLIQHYGKA 124 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 124 (491)
......|+.+-+..++ +.|..++... -...+...+..|+.+-+ +.+.+.|..++.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3445557766555554 3455444322 23334555667776543 4444455433321 112234455677
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCChHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLIS--FNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~ 202 (491)
|+.+.+..+++.-....-..+..- .+.+...+..|+. ++++.+.+.|..|+... -...+...+..|+.+-+.-
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 888776666654321100001111 1233334445554 34444455555544321 1223444556666554443
Q ss_pred HHHHHHhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHH
Q 041882 203 VFDEMLEREVPPT---VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT---YALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 203 ~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
++ +.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.
T Consensus 154 Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 33 3443222 22222222 333445544 3444555555544321 112333334455543 3344
Q ss_pred HHHcCCCCC
Q 041882 277 MAYRGCKPQ 285 (491)
Q Consensus 277 ~~~~~~~~~ 285 (491)
+.+.|..++
T Consensus 221 Ll~~gad~n 229 (413)
T PHA02875 221 FIKRGADCN 229 (413)
T ss_pred HHHCCcCcc
Confidence 455555544
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.60 E-value=12 Score=25.64 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHcCCCHHHHHHH
Q 041882 368 RVEDFEGSLKVLNAMLTSRHCPR--LETFSCLLVGLLKGGKVDDACFV 413 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 413 (491)
...+.++|+..|+..++.-..+. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555422211 12344555555555555555443
No 365
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.53 E-value=4.9 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=27.7
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKL 86 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 86 (491)
.+..-|.-..|-.+|++|+.+|.+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 566678888899999999999988864 77777654
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.48 E-value=14 Score=25.19 Aligned_cols=53 Identities=8% Similarity=-0.099 Sum_probs=39.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 398 LVGLLKGGKVDDACFVLEEMEKRKMRFD--LKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
+..| ...+.++|+..|+...+.-..+. ..++..++++++..|++.+.++....
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 77888999999999987644332 35788888999999998877776543
No 367
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.34 E-value=1e+02 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
...+..+.|+|+...+......... ++..++.++... +.++++++....++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~--~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS--PEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC--hhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 3566777888888555555544332 244444444433 77888877777766544
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.86 E-value=1.5e+02 Score=30.12 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=76.2
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCcCHH-----HHHHHHHHHHhCCChhhHHHHHHHHHHC--C--CCCCHHh
Q 041882 114 FISLIQHYG-KAHLVDKAIEVFNRMTSFDCVRTLQ-----SFNSLLDILVDNDRVDDAKRMFDDADKM--G--FRPNLIS 183 (491)
Q Consensus 114 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~--~~p~~~~ 183 (491)
+-.+...+. ...+++.|+..+++.....-.++.. .-..++..+.+.+... |...+++.++. + ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 334444444 5677777777777653332112211 1233445555555444 77766665543 1 1111222
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcCC---------C
Q 041882 184 FNVM-IKGRLKKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLC--RTGEMGKAKGLFEDMIKKGT---------Y 248 (491)
Q Consensus 184 ~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~ 248 (491)
|..+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+.++++.+.++.+..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 2222 222223367777777776665432 1222233333333322 34545666666666533211 2
Q ss_pred CCHHHHHHHHHHH--HhcCCHhHHHHHHHHH
Q 041882 249 PNAVTYALLMEGL--CFKGEYNEAKKMMFDM 277 (491)
Q Consensus 249 ~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~ 277 (491)
|...+|..+++.+ ...|+++.+...++++
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555544 3456655555555444
No 369
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.75 E-value=46 Score=24.08 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD 171 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (491)
-++|..+-+++...+- ....+--.-+..+...|++++|..+.+.+. .||...|-.|... +.|..+++..-+..
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 3455555555554431 111222222333455666666666665552 3566666554433 34555555555555
Q ss_pred HHHCC
Q 041882 172 ADKMG 176 (491)
Q Consensus 172 ~~~~~ 176 (491)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55544
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.65 E-value=50 Score=32.41 Aligned_cols=132 Identities=12% Similarity=0.005 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
+-+-.+|..|.. .+.|--.+++...-.....|+...|...+....-............|.+...+.|....|..++.+.
T Consensus 590 e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 344444444432 2333333334333333346888888888877654432222233455667777778888888887776
Q ss_pred hhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 138 TSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 138 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.... ...+-++-.+.+++....+++.|++.|++..+... -+...-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 6654 23556777888899999999999999998877632 23444455554444
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.46 E-value=1.2e+02 Score=28.85 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=7.0
Q ss_pred hhHHHHHHhhhhh
Q 041882 445 GLVEIRDMRDYSM 457 (491)
Q Consensus 445 ~~~~~~~m~~~~~ 457 (491)
-.++++.|....+
T Consensus 299 C~~ei~~mk~~~i 311 (413)
T PHA02875 299 CIIELRRIKSEKI 311 (413)
T ss_pred HHHHHHHHHhhcc
Confidence 3455666665444
No 372
>PRK09687 putative lyase; Provisional
Probab=65.61 E-value=1e+02 Score=27.60 Aligned_cols=233 Identities=12% Similarity=-0.004 Sum_probs=119.3
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCChhhH
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEW----EEASRVFDEMLEREVPPTVVTY 219 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 219 (491)
++.......+.++...|. ..+...+..+... +|...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555555555555554 2333333333332 3444444555555666552 3455555555332 2344444
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 220 NSLIGFLCRTGEM-----GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 220 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4555555444321 123333333222 2255555566666766665 3455555555542 33344444445
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 295 DLGKRG-KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFE 373 (491)
Q Consensus 295 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 373 (491)
++.+.+ +...+...+..+... ++..+-...+.++.+.++ ..++..+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 233455555555532 466666777777777777 45555555555432 2 234566777777775
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
+|...+..+.+.. +|..+-...+.++
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 5777777777632 4655555555544
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.00 E-value=66 Score=31.64 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=41.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|+...|...+.................|...+.+.|....|..++.+..... .....++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3445555555555544332211122233344444445555555555555544432 122334444555555555555555
Q ss_pred HHHHHHHhC
Q 041882 202 RVFDEMLER 210 (491)
Q Consensus 202 ~~~~~~~~~ 210 (491)
+.|+...+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 555555544
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.00 E-value=1.1e+02 Score=28.82 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKPNAA--TYRMMVDGFL--RVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 385 (491)
.+...+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888999988888876 555544 3444445444 456788888888877664
No 375
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.39 E-value=53 Score=25.88 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 65 HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 65 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
+.+.+.|.++++ --..++..+.+.++.-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334456666655 345556666666666777777777777665555554444444444444
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.69 E-value=1.6e+02 Score=28.49 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHhcCCHhHHHHHHHHHHHc---CCCCC----h-hcHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCC-----
Q 041882 261 LCFKGEYNEAKKMMFDMAYR---GCKPQ----L-VNFGVLMSDLGKRGKIEEAKSLLSEMKK-------RQYKPD----- 320 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~---~~~~~----~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~----- 320 (491)
+.-.|++..|.+++...--. |...+ . ..+|.+...+.+.|.+..+..+|..... .|.+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34566777776665433211 11111 1 1124444444455555555555554432 243332
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 321 ------VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 321 ------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
..+||.= -.|...|++-.|.+.|.+.... ...++..|-.+..+|..
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2234433 3456677777787777776543 35677777777777763
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.57 E-value=56 Score=23.28 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTS----RHCPR----LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+.|++..|.+.+.+..+. +.... ......+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777775555544432 21110 11222344556677888888888887763
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.44 E-value=74 Score=26.10 Aligned_cols=48 Identities=19% Similarity=0.067 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 92 FDAVETVLGYIQDFNIRCKE-------TLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
++.|..+|+.+.+.-..|.. -+-...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45677777777664322210 1112345556777777777777777765
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.70 E-value=1.5e+02 Score=27.87 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLERE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
..+.-+...|..+|+++.|++.|.+...-- ..-....|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356667778888888888888888754421 1113345566666667778888888877777654
No 380
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.31 E-value=1.3e+02 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHHHHHHhh-hCCCCCCHHhHHHHHH-HHHhcC-ChhHHHHHHHHHH
Q 041882 60 ALSLFHRHH-QMGSKHSYPSYASLIY-KLARAR-DFDAVETVLGYIQ 103 (491)
Q Consensus 60 A~~~~~~~~-~~~~~~~~~~~~~ll~-~~~~~~-~~~~a~~~~~~~~ 103 (491)
-+..|..+. ..| .|+...++.|.. .+.+.| -..-+.++|+...
T Consensus 149 KLA~~Tal~l~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~ 194 (412)
T KOG2297|consen 149 KLAMLTALLLSNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL 194 (412)
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH
Confidence 344454443 445 555556666653 344444 3345666665544
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.06 E-value=57 Score=22.89 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=6.4
Q ss_pred CChhHHHHHHHHHH
Q 041882 230 GEMGKAKGLFEDMI 243 (491)
Q Consensus 230 ~~~~~a~~~~~~~~ 243 (491)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.52 E-value=28 Score=22.59 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=17.3
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 390 RLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|..---.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344556666666777777666666653
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.16 E-value=15 Score=18.62 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=19.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.|..+...+...|++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666777778888888888877764
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.82 E-value=1.2e+02 Score=26.21 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH-HHHHHHHHHHHhCCChhhHHHH
Q 041882 90 RDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL-QSFNSLLDILVDNDRVDDAKRM 168 (491)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 168 (491)
+.+..|...|.+.+..+ |....-|..-+-.+.+..+++.+..--.+..+.. ||. ...-.+..+......+++|+..
T Consensus 24 k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34444555444444432 2222334444444444555554444333333321 222 2233333444444455555554
Q ss_pred HHHH
Q 041882 169 FDDA 172 (491)
Q Consensus 169 ~~~~ 172 (491)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 4443
No 385
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.10 E-value=1.3e+02 Score=26.19 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEG 260 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (491)
++..+-+.|+++++...++++...+...+..--+.+-.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva 45 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA 45 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 344444555555555555555555444444433333333
No 386
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.05 E-value=2.7e+02 Score=30.07 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=14.3
Q ss_pred hHHHhhhcCChHHHHHHHHHhh
Q 041882 47 FVNDLKEIRDPDEALSLFHRHH 68 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~ 68 (491)
.++.+...+++.+|+.+.++.+
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhc
Confidence 3445566778888877776543
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.95 E-value=1.5e+02 Score=27.01 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 302 IEEAKSLLSEMKKRQY----KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLK 377 (491)
Q Consensus 302 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (491)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667777877776422 34666666777777778776665555555553 4566777788888888888888889
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHcCCCH--HHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 378 VLNAMLTSRHCPRLETFSCLLVGLLKGGKV--DDACFVLEE----MEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
+++.+...+..++... ..++.++...+.. +.+..++.. +.+. +..+...+..++..+...-...+.++.+++
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9998888642233333 3344444433333 556555543 3322 333333556666654444456677777777
Q ss_pred Hhh
Q 041882 452 MRD 454 (491)
Q Consensus 452 m~~ 454 (491)
..+
T Consensus 301 f~~ 303 (324)
T PF11838_consen 301 FFE 303 (324)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 388
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.63 E-value=2.5e+02 Score=29.46 Aligned_cols=274 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
..|...|+|+.|.++-..- ...-..++..-...|.+.+++..|-+++-++.+ .|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHH---------------------hcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRL---------------------KKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
++..|-.=+-..++|...+-..++..+. .....+...+-|...... ..+.....+.
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~--~~~~~nretv 510 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVL--HKDELNRETV 510 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHh--hHHhhhHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----------------------
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR---------------------- 280 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------- 280 (491)
-..+...|+.+.+..+-.-+.+ |..++.-+.+.+.+.+|.+++..-...
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~w 581 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAW 581 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHH
Q ss_pred ---CCCCChhcHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041882 281 ---GCKPQLVNFGVLMSDLGKR---GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP 354 (491)
Q Consensus 281 ---~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 354 (491)
+-..+......++..+.+. .....+...++-....-...++..+|.++..|++..+-+.-..+-..+...+-
T Consensus 582 m~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~-- 659 (911)
T KOG2034|consen 582 MAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR-- 659 (911)
T ss_pred HHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
...-....++.|.+.+....+..++..|.
T Consensus 660 ~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 660 VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred ceecHHHHHHHHHHhCccceeeeHHHHHH
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.52 E-value=1.4e+02 Score=26.54 Aligned_cols=128 Identities=14% Similarity=0.233 Sum_probs=75.5
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHh-------HHHHHHHHHhcCChhHHHHHHHH----HHhcCCCCCHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPS-------YASLIYKLARARDFDAVETVLGY----IQDFNIRCKETL 113 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~ 113 (491)
..+.+.+...++.++|...+.+....|+..+..+ ...+...|...|++....+.... |....-+....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4467778888999999999999988887766544 44566778888877665554432 222222333445
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCcC-----HHHHHHHHHHHHhCCChhhHHHHHHHH
Q 041882 114 FISLIQHYGK-AHLVDKAIEVFNRMTSFDCVRT-----LQSFNSLLDILVDNDRVDDAKRMFDDA 172 (491)
Q Consensus 114 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 172 (491)
...++..+.. ...++.-+.+.....+....-+ ...-..++..+.+.|.+.+|+.+...+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5555655543 2345555555555443311111 112244666777777777777665443
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.77 E-value=1.7e+02 Score=27.35 Aligned_cols=57 Identities=7% Similarity=-0.051 Sum_probs=34.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL-KKGEWEEASRVFDEMLE 209 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 209 (491)
|..+.+.|.+..|+++.+-+......-|......+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556667777777777777776543334444445555543 55666666666665444
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.59 E-value=2.1e+02 Score=28.33 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHcC
Q 041882 329 NYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL-RVEDFEGSLKVLNAMLTSR---HCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 404 (491)
+.+.+.|.+..|+++-+-+......-|+.....+|..|+ +..+++-.+++++.....+ .-|+-.--.+++..|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 344556666666666666655432224444555555443 4556666666665553321 124433333444445444
Q ss_pred CC---HHHHHHHHHHHH
Q 041882 405 GK---VDDACFVLEEME 418 (491)
Q Consensus 405 g~---~~~a~~~~~~~~ 418 (491)
.. -..|...+.++.
T Consensus 430 ~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQAL 446 (665)
T ss_pred CChhhHHHHHHHHHHHH
Confidence 33 233444444443
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.14 E-value=75 Score=25.02 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
..+.+.|++++. --..++..+.+.++.-.|.++++.+.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445554332 334455555555555666666666666555555554444444444444
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.59 E-value=15 Score=28.08 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGF 225 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 225 (491)
.|.-.+|-.+|+.|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34455566666666666666554 5555543
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.37 E-value=36 Score=22.07 Aligned_cols=22 Identities=14% Similarity=0.091 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
.+|.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444555555555444444
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.17 E-value=1.4e+02 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 353 KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.|.+.....++..|.. +++++|.+++.++-+.|+.|. ...+.+.+.+
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 4666666666666553 567777777777777776553 3334454444
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.63 E-value=47 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=11.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFI 115 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 115 (491)
+.|-..++..+++.|.+.|+..++..+.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 3334444444444444444444444333
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.57 E-value=1.9e+02 Score=27.26 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=23.2
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHH--hHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYP--SYASLIYKLA--RARDFDAVETVLGYIQD 104 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 104 (491)
+-..+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445555555555555544 333332 2222222222 23344555555554443
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.33 E-value=74 Score=22.38 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
..|+.+.|.+++..+. +|.. .|...+.++...|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG----WFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCc
Confidence 3345555555555554 3311 44444444444444
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=1.7e+02 Score=26.09 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 252 VTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
..+..+..-|++.++.+.+.++..+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444555555555555555444443
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.55 E-value=1.9e+02 Score=26.51 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHc---CCCCChhcH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYR---GCKPQLVNF--GVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
+...-+.++.++|.++++++.+. .-.|+...| ....+.+...||..++.+++++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33334445666666666665542 113333333 2334444455666666666655544
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.50 E-value=2.2e+02 Score=27.40 Aligned_cols=127 Identities=5% Similarity=-0.079 Sum_probs=86.3
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
.+......|+...|-+-+....++- +-++.............|+++.+.+.+......- .....+...+++..-..|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhh
Confidence 4445556788877765554444332 3333333334455668899999999987766542 3455778888999999999
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 176 (491)
++.|..+-.-|....++ +.+.........-..|-++++...|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988877666 55554444444445577889998888876653
No 402
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.40 E-value=2.3e+02 Score=27.54 Aligned_cols=366 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCHHHHHHHHH---
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD-FDAVETVLGYIQDFNIRCKETLFISLIQ--- 119 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~--- 119 (491)
|..++.-..+.+.+.+.-.+|..|.... +.++..|.....-....+. ++.|..+|....+.+ +.++..|....+
T Consensus 108 W~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 108 WLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYFRMEL 185 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHHHHHH
Q ss_pred ---------------------------------------------------HHHhcCCHHHHHHHHHHhhhCCCCcCHHH
Q 041882 120 ---------------------------------------------------HYGKAHLVDKAIEVFNRMTSFDCVRTLQS 148 (491)
Q Consensus 120 ---------------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (491)
..-......+..+-..+....+.+.++.+
T Consensus 186 ~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~ 265 (568)
T KOG2396|consen 186 MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLL 265 (568)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q ss_pred HHHHHHHHHh-------------------CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH------hcCChHHHHHH
Q 041882 149 FNSLLDILVD-------------------NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL------KKGEWEEASRV 203 (491)
Q Consensus 149 ~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~~~~~~a~~~ 203 (491)
|..+..-... .-..+....+|++..+. -|+...|+..|..|. +...+.....+
T Consensus 266 ~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~ 343 (568)
T KOG2396|consen 266 WDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCV 343 (568)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcC
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK--GEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~ 281 (491)
++...+.+.. ....+......+.......++...-..+...++.-+...|..-+...... .---.-...+..+...-
T Consensus 344 ~~~~~~~~~l-~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~ 422 (568)
T KOG2396|consen 344 FRKAHELKLL-SECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV 422 (568)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM 361 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (491)
..+....++... -...-+...-..++..+...+-.-....-+.++..+.+.|-..+|...+..+.... +|+...|..
T Consensus 423 ~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~ 499 (568)
T KOG2396|consen 423 CSELLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRK 499 (568)
T ss_pred cchhHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHH
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 362 MVD--GFLRVEDFEGSLKVLNAMLTS-RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 362 li~--~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+|+ .-...-+..-+..+|+.|... | .|+..|-..+.--...|..+.+-.++.++.+
T Consensus 500 miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 500 MIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 403
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.38 E-value=1.1e+02 Score=23.99 Aligned_cols=83 Identities=8% Similarity=0.027 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLERE-----VPPTVVTYNSLIGFLCRTGE-MGKAKGLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (491)
.|.++.-....+++.....+++.+.-.. -..+...|.+++.+.++..- --.+..+|+-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555556666666666665553210 01244566666666655444 33455666666666666677777777
Q ss_pred HHHHHhcCC
Q 041882 258 MEGLCFKGE 266 (491)
Q Consensus 258 l~~~~~~~~ 266 (491)
++++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 766655433
No 404
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.86 E-value=1.9e+02 Score=26.35 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=56.9
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKK----RQYKPDVVTYNILINY-LCKEDRAAEAYKVLTEMQIGGCKPNA----A 357 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 357 (491)
..+......|++.||.+.|.+.+....+ .|.+.|...+..-+.. |....-..+-++..+.+.+.|-..+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888877765544 3566666555443322 22333344555555666666654443 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+|..+ -|....++.+|..+|-+.+..
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 44443 244556788888888776654
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.51 E-value=35 Score=30.44 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
|+..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666677777777777777666654433444
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.50 E-value=89 Score=25.98 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=13.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 179 PNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
|+...|..++..+...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.24 E-value=89 Score=31.32 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCCCCHHhHHHH
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAATYRMMVDGFLRVEDFEG------SLKVLNAMLTSRHCPRLETFSCL 397 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 397 (491)
.++.+|...|++-.+.++++.+...+ -+.=...++..++.+.+.|.++- |.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888898888888888887642 22234467777777788887642 333333332 33467777777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 041882 398 LVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+.+-..--.-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6665553333334444555443
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.05 E-value=1.1e+02 Score=27.41 Aligned_cols=57 Identities=7% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
.++|+.+.+.++.|...++.-+.-.+.+.-.+.+++.+|+.+.. |..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45666666667777777766666666666677777777777653 2222555555544
No 409
>PRK10941 hypothetical protein; Provisional
Probab=50.94 E-value=1.8e+02 Score=25.85 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=21.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 329 NYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++..++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444444444444444444321 12222222222234444444444444444443
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.63 E-value=12 Score=33.67 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHcCCCHHHHH
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL-ETFSCLLVGLLKGGKVDDAC 411 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~ 411 (491)
..|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++-+...++.+ ||. .-|-.--.+-.-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4577888888887777654 4555566666667777788888888777777743 432 22333333444568888888
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q 041882 412 FVLEEMEKRKMRFDLKAWE 430 (491)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (491)
..+....+.++.+....|-
T Consensus 203 ~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 8888888877766555443
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.27 E-value=1.4e+02 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041882 329 NYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~ 349 (491)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555543
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.06 E-value=37 Score=30.30 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 394 FSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
|+..|+.-.+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 446666666666666666666666666654
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.81 E-value=1e+02 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
-|..++..|...|.+++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888999999999888876
No 414
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.58 E-value=89 Score=21.90 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 97 TVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
++|+.....|+..|+.+|..+++...-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6677777777777777777777666655566666666666643
No 415
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.81 E-value=65 Score=20.12 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (491)
+.-++.+.|++++|.+..+.+.+. +|+......
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 445566666666666666666653 455443333
No 416
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.80 E-value=3.2e+02 Score=28.13 Aligned_cols=184 Identities=10% Similarity=0.081 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHH-HHHHHhcCChhHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 59 EALSLFHRHHQMGSKHSYPSYASL-IYKLARARDFDAVETVLGYIQ-DFNIRCKETLFISLIQHYGKAHLVDKAIEVFNR 136 (491)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 136 (491)
..+...+.+.+....|...+-..+ -..|...|++++|++.--..- ...+.++...+..++.-|... -.+.+.+.++.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~ 119 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKN 119 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcC
Confidence 334444444444434443333222 255777888888876543332 233445555555544443321 12333333332
Q ss_pred hh-hCCCCcC-HHHHHHHHHHHHhCCChhhHHHH---------HHHH-HHCCCCCCHHhHHHHHHHHHhcCC-hHHHHHH
Q 041882 137 MT-SFDCVRT-LQSFNSLLDILVDNDRVDDAKRM---------FDDA-DKMGFRPNLISFNVMIKGRLKKGE-WEEASRV 203 (491)
Q Consensus 137 ~~-~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~---------~~~~-~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 203 (491)
-. ..++.+. ....+.++..|...+++..|+.+ +++. .+....++ ..+.++..+....+ -+--.++
T Consensus 120 ~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~v 197 (929)
T KOG2062|consen 120 PEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKV 197 (929)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHH
Confidence 22 1111111 12345555555555555544433 2221 11111122 23333333333322 3334445
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
++.+...-.+....-|..+..+|.-..+.+.+.++++++.+.
T Consensus 198 lr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 198 LRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 555444211112223556778888889999999999999874
No 417
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.04 E-value=2e+02 Score=25.65 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh----CC
Q 041882 89 ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD----ND 160 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 160 (491)
.+++..+...+......+. ......+...|.. ..+...|.++|+...+.| .......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 3455555555555554331 1222333333322 234566666666555543 22333334444443 23
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----C--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK-----G--EWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR----T 229 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 229 (491)
+..+|..+|...-+.|..+.......+-..|..- - +...|...|.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5666666676666665433212222222222221 0 2235666666665554 33333334433322 2
Q ss_pred CChhHHHHHHHHHHHcCC
Q 041882 230 GEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~ 247 (491)
.++.+|..+|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 355666666666666554
No 418
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.80 E-value=1.4e+02 Score=29.97 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH------HHHHHHHHhhhCCCCcCHHHHHH
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVD------KAIEVFNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 151 (491)
.+|+.+|...|++-.+.++++.+...+- ..-...+|..++.+.+.|.++ .|.+.+++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 3788999999999999999998887652 112356777788888888764 2334444433 3346677777
Q ss_pred HHHHHHhCCChhhHHHHHHHHH
Q 041882 152 LLDILVDNDRVDDAKRMFDDAD 173 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~ 173 (491)
|+.+-..--+-...+-++.+++
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHH
Confidence 7766554333333333444444
No 419
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.80 E-value=70 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041882 365 GFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~ 384 (491)
++.+.|+++.|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455555555555555544
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.49 E-value=43 Score=17.38 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 405 GKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
|+.+.|..+|+++... ..-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 4556667777776654 2235555655544
No 421
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.26 E-value=18 Score=32.68 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=73.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA 165 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (491)
....|.++.|.+.+...+..+ ++....|..-..++.+.+++..|++=++...+.+.. +..-|-.--.+....|+|.+|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 346788999999999988887 677888888888999999999999888877775422 333444444555557999999
Q ss_pred HHHHHHHHHCCCCCCHHhH
Q 041882 166 KRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~ 184 (491)
...+....+.++.+....+
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 9999998888776655444
No 422
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.21 E-value=2.1e+02 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
...++.....|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344445556666666665555443
No 423
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.15 E-value=1.2e+02 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.4
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCC
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMG 71 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~ 71 (491)
.+++..+.+....++|+++.+.|...|
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344555555555666666666666555
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.58 E-value=2.7e+02 Score=26.31 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
...+.-+..-|...|+++.|++.|-+...- ..+-....|..+|..-.-.|+|..+..+..+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356788888999999999999999885543 11223345556666667778888888777776654
No 425
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.47 E-value=3.5e+02 Score=27.62 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=35.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCChhcHHHHHHHHHh---c
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-CKPQLVNFGVLMSDLGK---R 299 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~---~ 299 (491)
..+.-.|+++.|++++-. ..+...+...+...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444567888888888777 2223345555555554433222211111 2221111 01112456677777765 3
Q ss_pred CChHHHHHHHHHHHH
Q 041882 300 GKIEEAKSLLSEMKK 314 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~ 314 (491)
.+..+|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 566666666655544
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.19 E-value=85 Score=22.33 Aligned_cols=71 Identities=11% Similarity=-0.076 Sum_probs=44.8
Q ss_pred HHcCCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHH
Q 041882 401 LLKGGKVDDACFVLEEMEK----RKMRFD----LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWT 471 (491)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~----~~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~ 471 (491)
..+.|++.+|.+.+.+..+ .+.... ....-.+.......|..++++..+++.++..-+-.+..++......
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3578999999766665543 222220 2223334445677789999999999888877666666665554433
No 427
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.17 E-value=2.3e+02 Score=25.32 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=70.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCcCHHHHH
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETL-------FISLIQHYGKAHLVDKAIEVFNRM----TSFDCVRTLQSFN 150 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~ 150 (491)
+.....+.+++++|...+..+...|+..+..+ ...+...|...|+....-+..... ....-+..+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556678899999999999998887666543 446677788888776554443322 2221122333444
Q ss_pred HHHHHHHhC-CChhhHHHHHHHHHHCCCCCCHHh-----HHHHHHHHHhcCChHHHHHHHHHH
Q 041882 151 SLLDILVDN-DRVDDAKRMFDDADKMGFRPNLIS-----FNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 151 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
+|+.-+... ..++..+.+....++...+..... =..++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455444332 335555555555444322211111 133556667777777777655443
No 428
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=2.7e+02 Score=26.10 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCC-CCH
Q 041882 325 NILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM------------VDGFLRVEDFEGSLKVLNAMLTSRHC-PRL 391 (491)
Q Consensus 325 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 391 (491)
..+...+-..|+.++|..++.+.. ..||.++ ++.|...+||-.|.-+-+++...-+. |+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345555566677777777666542 1222221 45566677777777666666554222 332
Q ss_pred -----HhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 041882 392 -----ETFSCLLVGLLKGGKVDDACFVLEEMEKRK-MRFDLKAWEGLVTD 435 (491)
Q Consensus 392 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 435 (491)
.-|..++......+.+=.+.+.++..-+.| +.-|+.-|...+..
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 356777777777888888888888777554 33445555555543
No 429
>PRK10941 hypothetical protein; Provisional
Probab=43.98 E-value=2.3e+02 Score=25.15 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHH
Q 041882 149 FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE-VPPTVVTYNSLIGF 225 (491)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 225 (491)
.+.+-.+|.+.++++.|+...+.+.... +-|..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3445566667777777777777776653 1133334444445667777777777666665542 22344444444443
No 430
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=43.54 E-value=1.3e+02 Score=21.97 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+...|++++|..+.+.+ ..||...|-+|.. .+.|..+++...+.+|...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344445555554444333 2344444443332 2334444444444444433
No 431
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.43 E-value=4e+02 Score=27.66 Aligned_cols=155 Identities=9% Similarity=0.050 Sum_probs=90.3
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKH---SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
..-+.-+.+.+.+++|+..-+.-.. ..+ ........+..+.-.|+++.|-...-.|... +...|..-+..+
T Consensus 360 ~Dhi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 360 EDHIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred chhHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 3457778888999999999876443 233 3345677788888899999998888777754 345566556666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH---------CCCC-------CCHHhHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK---------MGFR-------PNLISFN 185 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~-------p~~~~~~ 185 (491)
...+....... -+.......+...|..++..+.. .+...-.++..+... .... -+...-.
T Consensus 434 ~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e 509 (846)
T KOG2066|consen 434 AELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLE 509 (846)
T ss_pred ccccccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHH
Confidence 66555543322 22222222455667777766665 222222222111000 0000 1112234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
.|+..|...++++.|++++-.+.+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 477778888888888887766543
No 432
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.41 E-value=57 Score=17.88 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 041882 408 DDACFVLEEME 418 (491)
Q Consensus 408 ~~a~~~~~~~~ 418 (491)
+.|..+|++..
T Consensus 4 dRAR~IyeR~v 14 (32)
T PF02184_consen 4 DRARSIYERFV 14 (32)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=2.7e+02 Score=25.55 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 330 YLCKEDRAAEAYKVLTEMQIG---GCKPNAATYR--MMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
..-+.++.++|++.++++.+. --.|+...|. .+.+.+...||..++.+.+++..+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334455666666666666542 1134444332 233445556666666666655554
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.37 E-value=2.2e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHhcCCH-------HHHHHHHHHHHhCCCCC----C-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 362 MVDGFLRVEDF-------EGSLKVLNAMLTSRHCP----R-LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 362 li~~~~~~~~~-------~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
+...|...|+. ..|.+.|.+..+..-.| + ..+.-.+.....+.|+.++|.++|.++...+-.
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34445555553 34666666666542221 2 233444556777899999999999999866543
No 435
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=42.34 E-value=3.2e+02 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=48.8
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhh
Q 041882 390 RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAI 459 (491)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~ 459 (491)
....|.....+|.+.+++..|..-|++..+..-+.-+....-+++ ...|+....+..+.+|.+.-..|
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin--~ieGgpp~dVq~Vrem~dhlak~ 653 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIIN--LIEGGPPRDVQDVREMLDHLAKP 653 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHH--hhcCCCcchHHHHHHHHHHhccC
Confidence 456789999999999999999999999886543322333344454 45677777777888888765555
No 436
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.18 E-value=1.3e+02 Score=22.22 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=10.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~ 242 (491)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455556666666555554
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.17 E-value=2.6e+02 Score=25.25 Aligned_cols=43 Identities=12% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555555455555555555555555543
No 438
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.70 E-value=97 Score=20.10 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=8.6
Q ss_pred HhcCChhHHHHHHHHHHh
Q 041882 87 ARARDFDAVETVLGYIQD 104 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~ 104 (491)
...|++-+|.++++.+-.
T Consensus 10 ~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HcCCCHHHhHHHHHHHHH
Confidence 344555555555555443
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.51 E-value=1.8e+02 Score=25.47 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 362 MVDGFLRVEDFEGSLKVLNAMLTS----RHC-PRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
+..-|...|++++|.++|+.+... |.. +...+...+..++.+.|+.++...+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334455555666665555555321 111 2233344444555555555555544333
No 440
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.87 E-value=1.7e+02 Score=23.77 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333444445555555555544444444333444444443
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.28 E-value=1.7e+02 Score=25.56 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC----C-CCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKM----G-FRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
.+...|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455555666666666666555321 2 223344455555666666666665554433
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.65 E-value=1.5e+02 Score=21.84 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 443
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.04 E-value=2.2e+02 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
..+.++..+...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455566666666666666666666553
No 444
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.03 E-value=1.6e+02 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFN 106 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 106 (491)
..+.+++.|.-.||++.|.++|..+.+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 46777788888888888888888877654
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.97 E-value=96 Score=20.40 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG 365 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 365 (491)
..++.++..+++..-.++++..+.++...| ..+..+|..-++.
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~ 51 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRS 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 334444444444444444444444444444 2333344333333
No 446
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.81 E-value=84 Score=20.67 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
.++.++...++..-.++++..+.+....|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444433
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.29 E-value=3.7e+02 Score=25.77 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
.+++.|+.++..|.+.|..|....-..++.++..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5566666666666666655544444444444333
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.25 E-value=1.4e+02 Score=20.96 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
++|+-....|+..|...|..++....-.--++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444445555555555555554444444444444444443
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.14 E-value=1.4e+02 Score=21.07 Aligned_cols=32 Identities=9% Similarity=-0.060 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 109 CKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
.|......+...+...|+++.|++.+-++...
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555443
No 450
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=2.7e+02 Score=24.18 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=72.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 53 EIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
...+++.|+..|.+.+.. .|+.. -|..-+..+.+..+++.+..--....+.. +........+.........++.|+
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHH
Confidence 345788899988777764 45553 45555666777889988887777776653 334455666777788889999999
Q ss_pred HHHHHhhh----CCCCcCHHHHHHHHHHHHhCCChhhHHHHHH
Q 041882 132 EVFNRMTS----FDCVRTLQSFNSLLDILVDNDRVDDAKRMFD 170 (491)
Q Consensus 132 ~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 170 (491)
..+.+... ..+.+-...+..|..+--..=...+..++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 98887733 2333334455555555433333334444433
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.78 E-value=1.2e+02 Score=29.14 Aligned_cols=52 Identities=10% Similarity=-0.115 Sum_probs=24.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhc-HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVN-FGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
...++++.|..++.+.++. .|+... |..-..++.+.+++..|..=+..+.+.
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 3444555555555555544 232222 222224455555555555555554443
No 452
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.48 E-value=2.9e+02 Score=24.38 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=15.2
Q ss_pred chHHHhhhcCChHHHHHHHHHhhh
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQ 69 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~ 69 (491)
.+++.+.+.+....|+.+.+.+..
T Consensus 87 ~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 87 HILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhcc
Confidence 356666666666777776666554
No 453
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.45 E-value=1.9e+02 Score=22.13 Aligned_cols=43 Identities=9% Similarity=-0.025 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
.+.++|..|...|+-. -...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888887776543 456677777778888888888888765
No 454
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.93 E-value=1.5e+02 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKET 112 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 112 (491)
+..+.++...++|+++++.|.++| ..+..
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 555556666677777777777666 33443
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.75 E-value=3.9e+02 Score=25.61 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 041882 326 ILINYLCK---EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED-----FEGSLKVLNAMLTSRH 387 (491)
Q Consensus 326 ~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~ 387 (491)
.++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++...|. ..-|...++....-|.
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 34444443 46788888888888887777765555555555544443 2233344444444554
No 456
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=3.7e+02 Score=25.32 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=91.3
Q ss_pred cchHHHhhhcCChHHHHHHHHHhh-----hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHH-----QMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
.+....+. .++.+.|++-+-... ..+...+...+..++..|...++|+..-+.+..+.+.... .......++.
T Consensus 17 ~~~~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq 94 (439)
T KOG1498|consen 17 LPKANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQ 94 (439)
T ss_pred hHhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 34444455 677777776554332 2233445556777788888888888766665554433211 1222222222
Q ss_pred HHHh----cCCHHHHHHHHHHh---hhCCCCc---CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHH---
Q 041882 120 HYGK----AHLVDKAIEVFNRM---TSFDCVR---TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNV--- 186 (491)
Q Consensus 120 ~~~~----~~~~~~a~~~~~~~---~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--- 186 (491)
-+.. ..+.+--+.+.+.+ .+-.+-. -...-..|...+-..|+.++|..++.++. +.||..
T Consensus 95 ~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~ 167 (439)
T KOG1498|consen 95 QAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEK 167 (439)
T ss_pred HHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHH
Confidence 2211 11222222222222 1111100 12233445666677788888888877653 223322
Q ss_pred ---------HHHHHHhcCChHHHHHHHHHHHhCCCC-CCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 187 ---------MIKGRLKKGEWEEASRVFDEMLEREVP-PTV-----VTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 187 ---------ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
-++.|...+++-.|.-+-+.+...-+. |+. ..|+.++....+.+.+=.+-+.|+.....
T Consensus 168 ~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 168 SEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 234455556665555444443322111 121 23455555555555555555555555443
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.43 E-value=3.7e+02 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
...++-.+-..+.+.|+.+.|.+++++..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666777788888888877777653
No 458
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.98 E-value=2.2e+02 Score=22.21 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 353 KPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTSRHC-PRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.++..+--.+..++.+.. +..+.+.+++.+.+...+ -.......|.-++.+.|+++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455555555666666554 455667777777763221 12334445666778888888888888877754
No 459
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.87 E-value=1.1e+02 Score=29.24 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=9.8
Q ss_pred HHhhhcCChHHHHHHHHHhhh
Q 041882 49 NDLKEIRDPDEALSLFHRHHQ 69 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~ 69 (491)
+.+...+.++.|+.++.++++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ 32 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE 32 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh
Confidence 334444444445544444444
No 460
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.01 E-value=3.6e+02 Score=24.41 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=35.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
.+.|+.+.|..+|+...... +.++.+..-+....-..+++-+|-++|-+....
T Consensus 127 ~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 35678888888888877765 455666665555555556666777766665543
No 461
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.95 E-value=1.3e+02 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=5.4
Q ss_pred cCCHHHHHHHHHHh
Q 041882 124 AHLVDKAIEVFNRM 137 (491)
Q Consensus 124 ~~~~~~a~~~~~~~ 137 (491)
.|++-+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444443
No 462
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.95 E-value=3.4e+02 Score=24.19 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=98.7
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLAR----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK---- 123 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 123 (491)
...+++..|...+......+.. .....+...+.. ..+...|.+++......|. ......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 3567888888888877764422 344444544443 3467889999997777663 3444446666654
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC-------ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND-------RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK--- 193 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--- 193 (491)
..+..+|...|++....|..+...+...+...|.... +...|...|.+.-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 4489999999999999875432233455555554431 2347888888887776 34444444444433
Q ss_pred -cCChHHHHHHHHHHHhCCC
Q 041882 194 -KGEWEEASRVFDEMLEREV 212 (491)
Q Consensus 194 -~~~~~~a~~~~~~~~~~~~ 212 (491)
..+.++|...|....+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 3478899999999988864
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.92 E-value=7e+02 Score=27.76 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041882 109 CKETLFISLIQHYGKAHLVDKAIEVFN 135 (491)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 135 (491)
.....|..+...+-+.++.++|+..=.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ 997 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQR 997 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcc
Confidence 344555666666666666666665433
No 464
>PRK09857 putative transposase; Provisional
Probab=33.90 E-value=3.6e+02 Score=24.37 Aligned_cols=66 Identities=8% Similarity=-0.000 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN 180 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 180 (491)
+..++....+.++.++..++++.+.+.. +......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4555555566677666667766665542 22333444556666666776778888888888887644
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=3.7e+02 Score=24.15 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLT 345 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~ 345 (491)
..+..+...|++.++.+.+.+...
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444445555555444444433
No 466
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.61 E-value=4.1e+02 Score=24.60 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 373 EGSLKVLNAMLTSRHCPRL----ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
+++..++..++.. .|+. .-|..+++.....|.+++++.+|++++..|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4555555655553 1332 356667777777777777788888777777777666666666543
No 467
>PRK09857 putative transposase; Provisional
Probab=32.46 E-value=3.8e+02 Score=24.21 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
+..++......++.++..++++.+.+. .+.......+++.-+...|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444555555555665555544 222222333455555555655666777777777666543
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.38 E-value=4e+02 Score=24.43 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCChhhHHH
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLE----REVPPTVVTYNS 221 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 221 (491)
.+.....-|++-|+-+.|++.+....+ .|.+.|+..+.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 334444556666666666666555433 244444444433
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.09 E-value=1.6e+02 Score=21.82 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3334444444455555555555544444444444444444444
No 470
>PRK11619 lytic murein transglycosylase; Provisional
Probab=31.81 E-value=5.9e+02 Score=26.24 Aligned_cols=293 Identities=11% Similarity=-0.024 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHH--HHHHHHHHCCCCCCHHhHH
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAK--RMFDDADKMGFRPNLISFN 185 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~p~~~~~~ 185 (491)
+.+...-.....+....|+.++|....+.+=..|. .....++.++..+.+.|...... +-++.+...| +...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45556666777778888888777766666644442 25567777777777666543322 2222222222 111111
Q ss_pred HHHHHHH------------hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcC-CCCC
Q 041882 186 VMIKGRL------------KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLC--RTGEMGKAKGLFEDMIKKG-TYPN 250 (491)
Q Consensus 186 ~ll~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-~~~~ 250 (491)
.+..... -..+...+...+.. +.++...-..++.++. ...+.+.|...+....... ..+.
T Consensus 202 ~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~ 276 (644)
T PRK11619 202 YLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNED 276 (644)
T ss_pred HHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHH
Confidence 1111110 00111111111111 1122211111122221 2345677777777664332 2211
Q ss_pred H--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 251 A--VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILI 328 (491)
Q Consensus 251 ~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 328 (491)
. .+...+.......+..+++...+....... .+......-+....+.++++.+...+..|...... ...-.--+.
T Consensus 277 ~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~a 353 (644)
T PRK11619 277 QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQA 353 (644)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHH
Confidence 1 122333333333322445555555433221 23333334444445667777766666666443221 233333455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------------CCC--------CCH-HH-----HHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 329 NYLCKEDRAAEAYKVLTEMQIG------------GCK--------PNA-AT-----YRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~------------~~~--------~~~-~~-----~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+++...|+.++|...|+.+... |.+ |.. .. -..-+..+...|....|...+..+
T Consensus 354 Ra~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~ 433 (644)
T PRK11619 354 DLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANL 433 (644)
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555567777777776665321 111 000 00 011233455667777777777777
Q ss_pred HhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 383 LTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
... .+......+.......|.++.++....
T Consensus 434 ~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 434 VAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred Hhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 664 233444445555556666666655443
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.80 E-value=2.1e+02 Score=21.15 Aligned_cols=90 Identities=18% Similarity=0.062 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
....++|..+.+++...+ .-....--.-+..+.++|+|+.| +..-.... .||...|.+|-. .+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~-~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCHC-YPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccCC-CccHHHHHHHHH--HhhccHHHHHHH
Q ss_pred HHHhhhCCCCcCHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (491)
+.++...| .|....|..
T Consensus 92 l~rla~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 92 LTRLASSG-SPELQAFAA 108 (116)
T ss_dssp HHHHCT-S-SHHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHHH
No 472
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=31.67 E-value=2.9e+02 Score=22.63 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 340 AYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
..+++..+.+.|.--|...-...+..-.+.| ..-..+..++...|+ +..+....+..+......+.|..++.+
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3444444444444444433333344333333 233444455555553 333333444433333344444444433
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.52 E-value=2.4e+02 Score=21.56 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 164 DAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
.+.++|..|...|+-. -...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5556666665544322 234455555555566666666666543
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.15 E-value=2.9e+02 Score=22.44 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=21.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
.++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444555555555555544444444434444444444
No 475
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=31.10 E-value=4.8e+02 Score=24.97 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHH
Q 041882 62 SLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH--------YGKAHLVDKAIEV 133 (491)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~ 133 (491)
++...+....+.||..+.+-+...++..-..+....+|+...+.+ .|--..+-++|-. -.+...-++++++
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
++.|...=-.-|+.-+-+|...|+..
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHhhc
No 476
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=5.6e+02 Score=25.65 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=52.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL-KKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLCR 228 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~ 228 (491)
|..+.+.|-+..|+++.+-+.+....-|+.....+|+.|+ +..+++-.+++++.....+ .-||-..-.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4555667888888888887777654445666666666654 5567777777777664432 23444333344444444
Q ss_pred cCC---hhHHHHHHHHHHH
Q 041882 229 TGE---MGKAKGLFEDMIK 244 (491)
Q Consensus 229 ~~~---~~~a~~~~~~~~~ 244 (491)
... -+.|...+.+...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALK 447 (665)
T ss_pred cCChhhHHHHHHHHHHHHH
Confidence 433 2344444544444
No 477
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=30.36 E-value=2.4e+02 Score=21.21 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (491)
+.+..++..+.+.|+--|..-....+....+.+. .....+-.++...|+.
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi~ 58 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGID 58 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCCC
Confidence 3455566666666655444444444544443111 2234445555566643
No 478
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.26 E-value=2.2e+02 Score=20.71 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=7.9
Q ss_pred HHhcCCCcchhHHHHH
Q 041882 436 ACIGDGNAGGLVEIRD 451 (491)
Q Consensus 436 ~~~~~~~~~~~~~~~~ 451 (491)
|...|+.+.++.+++.
T Consensus 82 ys~~G~~e~a~~eFet 97 (121)
T COG4259 82 YSNSGKDEQAVREFET 97 (121)
T ss_pred HhhcCChHHHHHHHHH
Confidence 3455555555555543
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.20 E-value=5.1e+02 Score=24.71 Aligned_cols=173 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLERE-------VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTY 254 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (491)
.+...|++.++-.||+..|+++++.+.-.. ..-...++--+.-+|...+++.+|.+.|....-. .
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y--------i 194 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY--------I 194 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Q ss_pred HHHH-HHHHhcCCHhHHHHHHHHHHHc--------CCCCChhcHHHHHHHHH------hcCChHHHHHHHHHHHHcCCCC
Q 041882 255 ALLM-EGLCFKGEYNEAKKMMFDMAYR--------GCKPQLVNFGVLMSDLG------KRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 255 ~~ll-~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
...- ....+..+.+...+.-++|... ....|..+...+=+-|. +.|+.+.-.++|...--+-+.|
T Consensus 195 ~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp 274 (404)
T PF10255_consen 195 QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISP 274 (404)
T ss_pred HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCC
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041882 320 D-VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM 362 (491)
Q Consensus 320 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (491)
. +..+............-....-.++++.....-|+...|..|
T Consensus 275 ~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 275 VSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKL 318 (404)
T ss_pred CCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.19 E-value=1.6e+02 Score=21.76 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=23.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 334444444455566666666665555555555555555555543
No 481
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.91 E-value=2.9e+02 Score=21.74 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRT-GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
+.+.|+..+. .-..++..+... +..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344554332 233344444433 345566666666666655555555544555555544
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.68 E-value=1.5e+02 Score=22.21 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
..++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3445555555556666666666666655555554444444444444
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.25 E-value=4.8e+02 Score=24.13 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 268 NEAKKMMFDMAYRGCKPQL----VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
+++..++..++.. .|+. .-|-.+.......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555544 3332 2244555666667777777777777777777766665555555543
No 484
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.02 E-value=2.9e+02 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=7.2
Q ss_pred HHhcCChHHHHHHHHHHH
Q 041882 191 RLKKGEWEEASRVFDEML 208 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~ 208 (491)
+.+.++++.++++.+.+.
T Consensus 81 ~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 81 HYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 333344444444444333
No 485
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.84 E-value=3.9e+02 Score=22.95 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~ 347 (491)
|......|+.++|.+....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444455555555544443
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.54 E-value=4e+02 Score=22.92 Aligned_cols=19 Identities=5% Similarity=0.251 Sum_probs=8.8
Q ss_pred HHHHhCCChhhHHHHHHHH
Q 041882 154 DILVDNDRVDDAKRMFDDA 172 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~ 172 (491)
......|+.++|.+...++
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3334445555554444443
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.37 E-value=5e+02 Score=24.73 Aligned_cols=22 Identities=9% Similarity=0.005 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
.|++...-.|+.+...+.++.+
T Consensus 240 GLlR~H~lLgDhQat~q~idi~ 261 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIM 261 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcC
Confidence 3444444444444444444444
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=8e+02 Score=26.29 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 226 LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
|......+.++.+++.+....-..+..-.+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455566667777777665544445555555555554
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.93 E-value=3.1e+02 Score=21.52 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 196 EWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555444444444333444444433
No 490
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.65 E-value=5.8e+02 Score=24.48 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
...+.++.+.|+...+..+.+.|
T Consensus 256 ~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 256 REALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHHHHcCCcchHHHHHHHh
Confidence 34444445555544444444433
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.35 E-value=5.6e+02 Score=24.21 Aligned_cols=54 Identities=15% Similarity=-0.019 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHH--hcCCHHHHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAAT----YRMMVDGFL--RVEDFEGSLKVLNA 381 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~--~~~~~~~a~~~~~~ 381 (491)
+..+.+.+++..|.++|+++.....++.... +..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3355677899999999999987755544433 333344443 35677888888875
No 492
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.98 E-value=9.6e+02 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 181 LISFNVMIKGRLKKGEWEEASRVFDEML-------EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
...|..+...+-+.++.++|...-.... .....-+...|..+...+...++...|...+.+..
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 3455555666666666666665443321 11112223344444444444455555555555443
No 493
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.78 E-value=5e+02 Score=23.42 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 291 VLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 291 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
.++....+.++.......+..+. ....-...++.+...|++..|++++.+..+.- -+..-|+++=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---hH
Confidence 34555556666666666666554 23334556777788999999999998876531 011111111111 12
Q ss_pred CHHHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 371 DFEGSLKVLNAMLTSR-----HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
++++-....+.+++.. ..-|+..|..+..||.-.|+...+.+-+...--..+ ...+...+..
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i--~~~~~~vv~~ 238 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAI--HSTTFSVVRS 238 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 2333333333333321 135788999999999999988776654444322212 3345554444
No 494
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.56 E-value=5.4e+02 Score=23.79 Aligned_cols=134 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
+.+.|++.++-+.+..+-+.+... ......++..++-...-.+...+.+.+..+.. +|......++++.+....
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~l----P~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~ 245 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHL----PPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPA 245 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhC----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCc
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVL-MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
.......+..+.......+......+ .+......+.+.+..+++++... +|...|+.+..
T Consensus 246 ~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~---~~~~lF~qlfa 306 (340)
T PF12069_consen 246 SDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQ---DDQALFNQLFA 306 (340)
T ss_pred hhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcc---cHHHHHHHHHH
No 495
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=25.49 E-value=1.9e+02 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcchH---HHhhhcCChHHHHHHHHHhh
Q 041882 35 HKTIRKTKEPIPFV---NDLKEIRDPDEALSLFHRHH 68 (491)
Q Consensus 35 ~~~~~~~~~~~~~~---~~l~~~~~~~~A~~~~~~~~ 68 (491)
..+.....+|.+|= ..+...+....|-++|+.+.
T Consensus 22 ~~~~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k 58 (276)
T PF12037_consen 22 PRTTASGFDPEALERAAKALRELNSSPHAKKAFELMK 58 (276)
T ss_pred CCcccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 33344556666643 33444555556666665554
No 496
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.48 E-value=5.6e+02 Score=23.93 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCcchHHHhhhcCChHHHHHHHHHhhhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 041882 39 RKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGS-KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISL 117 (491)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (491)
......-+++..+--+...-..+.++.-+..... .|++.+.-.++.-+....+-+....+-..+... .+.+
T Consensus 37 k~~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~l--------c~~l 108 (422)
T KOG2582|consen 37 KNSSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEIFFPL--------CHDL 108 (422)
T ss_pred hCcchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHHHHH--------HHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcC---HHHHHHHHHHHHhCCChhhHHHHHHHHHHCC------CCCCHHhHHHHH
Q 041882 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRT---LQSFNSLLDILVDNDRVDDAKRMFDDADKMG------FRPNLISFNVMI 188 (491)
Q Consensus 118 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~ll 188 (491)
..++.+.+.....+....+....-...+ ......++..+.+.+++..++..++.-...- +.|.....-..-
T Consensus 109 ~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yY 188 (422)
T KOG2582|consen 109 TEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYY 188 (422)
T ss_pred HHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHh
Q ss_pred HH--HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 189 KG--RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR--------TGEMGKAKGLFEDMIKKGTYPNAVTYALLM 258 (491)
Q Consensus 189 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (491)
.+ |...++++.|+-+|...... |....-...+.+|.+ .|+.-..-+.-......-.+|-.-.|..+.
T Consensus 189 gg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~ 265 (422)
T KOG2582|consen 189 GGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFL 265 (422)
T ss_pred cceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHH
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhc
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNIL----INYLCKE 334 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~ 334 (491)
.+|.+....+ .+.+..+..++ +.+-++..-+...+..+.++++.--..+|..+ |...++.
T Consensus 266 ~~Y~~~~~~e-Lr~lVk~~~~r---------------F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQL 329 (422)
T KOG2582|consen 266 NVYLKDSSTE-LRTLVKKHSER---------------FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQL 329 (422)
T ss_pred HHHhcCCcHH-HHHHHHHHHHH---------------HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHhCC
Q 041882 335 DRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~ 351 (491)
+..++|.+..-+|.+.|
T Consensus 330 a~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 330 ASAQEVEKYILQMIEDG 346 (422)
T ss_pred cchHHHHHHHHHHhccC
No 497
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.45 E-value=9e+02 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=23.4
Q ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041882 393 TFSCLLVGLLKGG--KVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 393 ~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
....++.+|++.+ ++++|+....++.+. +.......+..+|-.-+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~fLvD 860 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCFLVD 860 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHheeecc
Confidence 3445566666666 666666666666644 33333444443444333
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.44 E-value=1.5e+02 Score=22.19 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
.++......+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444455555555566666666666555555554444444444444
No 499
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.36 E-value=4.8e+02 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVF 134 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~ 134 (491)
++..+..+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555555555555555555444
No 500
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.13 E-value=2.3e+02 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSR-HCPRLETFSCL 397 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 397 (491)
-.+++.|.+.|.+++|.++........ -.|+......+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 367889999999999999887765531 12554444444
Done!