Query 041882
Match_columns 491
No_of_seqs 630 out of 3126
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 20:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-39 1.2E-43 322.0 40.2 430 45-488 88-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.7E-36 1.6E-40 299.4 41.0 417 45-474 121-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-29 1.5E-33 235.0 47.5 361 47-418 5-366 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-28 5E-33 231.5 48.9 384 82-477 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.4E-35 249.6 26.0 212 200-437 9-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-30 4.1E-35 249.8 24.7 203 96-298 10-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.5E-24 2.6E-28 207.0 38.2 415 46-472 11-493 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4E-28 205.7 37.8 374 44-427 42-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.4E-23 2.2E-27 197.0 41.6 304 73-385 23-358 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-22 3.8E-27 195.3 41.3 327 95-433 11-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 5.7E-22 1.9E-26 194.9 36.3 398 45-456 29-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 8.7E-22 3E-26 193.5 35.1 398 76-488 25-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-19 4.2E-24 168.3 39.7 325 76-434 3-348 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.8E-19 1.3E-23 165.0 40.8 334 111-476 3-354 (359)
15 2xm6_A Protein corresponding t 99.9 6.1E-17 2.1E-21 156.8 50.7 367 75-471 38-449 (490)
16 3hym_B Cell division cycle pro 99.9 4.4E-19 1.5E-23 162.6 32.5 269 74-348 20-297 (330)
17 3hym_B Cell division cycle pro 99.9 8.2E-19 2.8E-23 160.8 32.1 286 144-436 20-314 (330)
18 2xm6_A Protein corresponding t 99.9 1.5E-16 5.1E-21 154.1 47.4 339 54-422 56-434 (490)
19 1fch_A Peroxisomal targeting s 99.8 9.7E-19 3.3E-23 163.0 26.5 279 78-382 66-356 (368)
20 2ooe_A Cleavage stimulation fa 99.8 2E-16 6.8E-21 154.8 43.4 410 44-463 16-498 (530)
21 1fch_A Peroxisomal targeting s 99.8 2E-18 6.8E-23 160.9 26.5 266 148-418 66-357 (368)
22 2ooe_A Cleavage stimulation fa 99.8 4.3E-16 1.5E-20 152.5 41.7 415 64-488 2-489 (530)
23 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.5E-23 162.0 21.3 268 145-416 64-352 (365)
24 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.3E-23 162.1 21.0 266 112-381 66-352 (365)
25 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6.3E-22 151.5 24.6 154 261-417 148-312 (327)
26 3cv0_A Peroxisome targeting si 99.8 4.6E-17 1.6E-21 148.8 26.9 229 80-314 25-268 (327)
27 4g1t_A Interferon-induced prot 99.8 5.4E-16 1.9E-20 149.6 35.2 380 73-487 48-455 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.2E-21 142.9 28.2 250 122-385 10-264 (291)
29 1b89_A Protein (clathrin heavy 99.8 7.7E-18 2.6E-22 153.9 20.3 283 52-377 14-303 (449)
30 3mkr_A Coatomer subunit epsilo 99.8 2.7E-16 9.4E-21 140.6 27.8 251 50-314 8-263 (291)
31 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.4E-22 152.4 19.2 283 88-413 15-304 (449)
32 4g1t_A Interferon-induced prot 99.8 4.4E-15 1.5E-19 143.2 37.0 377 47-456 57-460 (472)
33 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.7E-19 147.8 40.5 378 45-482 989-1375(1630)
34 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4E-22 164.9 12.3 151 145-300 126-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.6E-17 1.2E-21 161.5 12.3 169 283-457 124-308 (1134)
36 1xi4_A Clathrin heavy chain; a 99.7 1.2E-12 4.2E-17 133.8 43.8 343 74-475 983-1327(1630)
37 3uq3_A Heat shock protein STI1 99.7 1.4E-14 4.7E-19 127.4 26.4 225 182-420 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.7 9.1E-15 3.1E-19 128.6 24.5 223 77-313 6-234 (258)
39 2pl2_A Hypothetical conserved 99.7 8.2E-15 2.8E-19 125.1 22.5 198 215-418 4-212 (217)
40 2pl2_A Hypothetical conserved 99.7 9.3E-15 3.2E-19 124.8 21.4 197 74-276 3-210 (217)
41 3e4b_A ALGK; tetratricopeptide 99.7 5E-14 1.7E-18 134.3 27.1 349 45-422 7-389 (452)
42 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.3E-18 127.5 27.5 248 76-331 97-363 (382)
43 2ho1_A Type 4 fimbrial biogene 99.6 3E-14 1E-18 124.9 22.3 193 49-245 45-238 (252)
44 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.6E-18 122.2 26.6 233 184-420 6-250 (272)
45 3u4t_A TPR repeat-containing p 99.6 1.1E-13 3.8E-18 122.7 25.9 163 80-245 7-171 (272)
46 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-14 9.6E-19 124.2 21.3 200 42-246 24-223 (243)
47 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.5E-18 126.8 26.6 230 111-347 97-344 (382)
48 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.4E-17 115.4 32.0 220 183-420 8-251 (273)
49 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.6E-17 115.3 31.8 221 76-314 6-250 (273)
50 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-13 6.4E-18 130.3 27.0 347 81-456 8-388 (452)
51 2ho1_A Type 4 fimbrial biogene 99.6 3.3E-13 1.1E-17 118.2 26.6 200 77-280 38-238 (252)
52 2vq2_A PILW, putative fimbrial 99.6 4.9E-13 1.7E-17 114.7 26.3 201 76-279 8-210 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-14 1.1E-18 126.4 19.2 250 50-309 14-269 (275)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-14 1.8E-18 125.0 20.1 221 184-414 46-269 (275)
55 2vq2_A PILW, putative fimbrial 99.6 7E-13 2.4E-17 113.7 26.1 200 217-419 9-210 (225)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-13 4.8E-18 119.8 21.2 59 359-418 162-220 (243)
57 4e6h_A MRNA 3'-END-processing 99.6 2.5E-10 8.6E-15 112.6 42.5 393 57-455 48-570 (679)
58 3sf4_A G-protein-signaling mod 99.5 1.9E-13 6.6E-18 128.7 18.8 300 144-444 7-365 (406)
59 3sf4_A G-protein-signaling mod 99.5 2.2E-13 7.4E-18 128.4 18.8 302 74-407 7-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 5.6E-13 1.9E-17 125.9 20.9 274 79-384 51-371 (411)
61 4a1s_A PINS, partner of inscut 99.5 2.8E-13 9.5E-18 128.0 18.2 276 113-420 50-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.1E-15 113.2 38.2 392 43-441 68-588 (679)
63 3ulq_A Response regulator aspa 99.5 4.7E-12 1.6E-16 118.4 24.0 230 187-419 109-367 (383)
64 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.1E-17 119.7 19.5 275 79-385 8-332 (338)
65 3vtx_A MAMA; tetratricopeptide 99.5 9.5E-12 3.2E-16 103.1 23.1 165 216-384 5-169 (184)
66 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.8E-17 119.9 18.5 278 114-420 8-332 (338)
67 2ond_A Cleavage stimulation fa 99.5 2.3E-11 7.8E-16 109.9 26.7 218 58-280 33-270 (308)
68 2ond_A Cleavage stimulation fa 99.5 6.3E-11 2.2E-15 107.0 29.5 184 233-420 81-270 (308)
69 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-11 3.8E-16 102.6 22.0 167 75-245 4-170 (184)
70 4abn_A Tetratricopeptide repea 99.5 2.9E-12 9.9E-17 122.9 20.3 216 91-312 83-318 (474)
71 3ulq_A Response regulator aspa 99.5 1.2E-11 4E-16 115.6 23.3 294 86-384 22-367 (383)
72 4abn_A Tetratricopeptide repea 99.5 3.8E-12 1.3E-16 122.1 20.0 214 197-417 84-318 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.6E-17 118.0 13.7 168 77-244 28-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-12 4E-17 118.5 13.3 170 110-279 26-223 (311)
75 3q15_A PSP28, response regulat 99.4 9.1E-11 3.1E-15 109.4 25.0 228 188-419 108-364 (378)
76 1hz4_A MALT regulatory protein 99.4 4.6E-10 1.6E-14 104.4 27.7 200 220-419 97-321 (373)
77 1hz4_A MALT regulatory protein 99.4 3.4E-10 1.2E-14 105.2 26.4 264 121-384 24-321 (373)
78 3q15_A PSP28, response regulat 99.3 5.9E-10 2E-14 103.8 26.2 231 151-384 106-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.8E-15 95.3 19.5 164 113-280 10-173 (186)
80 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.7E-15 94.2 20.5 94 323-418 78-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 7.7E-11 2.6E-15 117.7 20.0 167 74-244 7-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.3 2.1E-10 7E-15 114.6 21.4 165 216-384 9-173 (723)
83 4i17_A Hypothetical protein; T 99.3 1.2E-09 4E-14 93.9 22.1 192 217-420 8-209 (228)
84 4i17_A Hypothetical protein; T 99.3 1.1E-09 3.9E-14 93.9 21.6 134 110-245 6-146 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.9E-10 6.6E-15 102.1 15.2 134 146-279 43-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5E-15 102.9 14.0 225 55-280 15-281 (283)
87 1qqe_A Vesicular transport pro 99.2 3.1E-09 1.1E-13 94.9 20.8 192 225-418 46-267 (292)
88 3mv2_B Coatomer subunit epsilo 99.2 1.8E-08 6.3E-13 88.3 23.8 11 52-62 24-34 (310)
89 1qqe_A Vesicular transport pro 99.1 3.7E-09 1.3E-13 94.4 19.5 161 84-244 45-227 (292)
90 3mv2_B Coatomer subunit epsilo 99.1 3.5E-08 1.2E-12 86.5 24.7 249 83-357 20-287 (310)
91 2pzi_A Probable serine/threoni 99.1 2.6E-09 9E-14 107.1 17.3 174 87-266 402-583 (681)
92 2fo7_A Synthetic consensus TPR 99.1 1.4E-08 4.9E-13 78.5 17.8 129 289-420 4-132 (136)
93 3dra_A Protein farnesyltransfe 99.1 2.7E-07 9.1E-12 81.8 27.6 134 93-230 50-194 (306)
94 3qky_A Outer membrane assembly 99.1 1.5E-08 5.1E-13 88.9 19.1 100 75-175 14-126 (261)
95 3dra_A Protein farnesyltransfe 99.1 2.6E-07 9E-12 81.8 27.0 228 47-279 38-286 (306)
96 3qky_A Outer membrane assembly 99.1 1.5E-08 5.2E-13 88.8 19.1 93 47-140 21-126 (261)
97 2uy1_A Cleavage stimulation fa 99.0 1.9E-07 6.6E-12 89.4 27.5 203 233-453 196-411 (493)
98 3urz_A Uncharacterized protein 99.0 1.8E-08 6E-13 85.0 18.1 136 292-433 60-197 (208)
99 3urz_A Uncharacterized protein 99.0 2.1E-08 7.1E-13 84.6 18.3 172 216-396 4-195 (208)
100 2fo7_A Synthetic consensus TPR 99.0 2.7E-08 9.3E-13 76.9 17.8 126 219-347 4-129 (136)
101 3rjv_A Putative SEL1 repeat pr 99.0 6.6E-08 2.3E-12 81.7 20.9 178 58-247 3-199 (212)
102 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.9E-13 83.6 14.8 161 79-243 9-171 (176)
103 2pzi_A Probable serine/threoni 99.0 9.5E-09 3.3E-13 103.1 17.0 173 192-371 402-583 (681)
104 3qou_A Protein YBBN; thioredox 99.0 2.3E-08 7.7E-13 89.0 17.6 164 110-277 116-281 (287)
105 2uy1_A Cleavage stimulation fa 99.0 1.1E-06 3.8E-11 84.1 29.7 345 55-419 28-412 (493)
106 2r5s_A Uncharacterized protein 99.0 9.8E-09 3.4E-13 84.0 12.8 162 44-209 9-172 (176)
107 4ga2_A E3 SUMO-protein ligase 98.9 7.7E-09 2.6E-13 82.0 11.7 141 51-195 7-148 (150)
108 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4.2E-12 80.0 19.7 176 94-281 4-198 (212)
109 4ga2_A E3 SUMO-protein ligase 98.9 4.4E-09 1.5E-13 83.4 9.5 141 121-265 7-148 (150)
110 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 97.2 17.9 155 54-212 2-159 (568)
111 3qou_A Protein YBBN; thioredox 98.9 4.4E-08 1.5E-12 87.1 16.6 165 145-313 116-282 (287)
112 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.8E-07 6.2E-12 79.8 19.7 66 76-141 4-71 (225)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.8E-07 9.6E-12 78.6 20.8 202 182-421 5-214 (225)
114 2vsy_A XCC0866; transferase, g 98.9 6E-08 2E-12 95.5 18.1 155 89-247 2-159 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 6.2E-08 2.1E-12 87.1 15.9 185 225-412 45-253 (307)
116 3q7a_A Farnesyltransferase alp 98.8 4.6E-06 1.6E-10 74.7 26.3 174 87-265 65-256 (349)
117 3q7a_A Farnesyltransferase alp 98.8 5E-06 1.7E-10 74.5 26.5 175 53-232 66-258 (349)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4.1E-12 85.2 15.8 227 54-308 4-254 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.8E-11 74.0 18.9 124 292-420 12-150 (213)
120 2e2e_A Formate-dependent nitri 98.7 1.4E-07 4.9E-12 77.0 12.9 125 49-176 18-145 (177)
121 3u3w_A Transcriptional activat 98.7 3.7E-06 1.3E-10 74.9 23.1 162 117-278 81-264 (293)
122 3u3w_A Transcriptional activat 98.7 3.3E-06 1.1E-10 75.2 22.0 161 152-312 81-263 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.7E-06 5.8E-11 72.9 18.7 125 256-385 11-150 (213)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 3.1E-06 1.1E-10 75.4 21.3 165 254-418 78-264 (293)
125 4gco_A Protein STI-1; structur 98.7 8.7E-07 3E-11 67.6 14.2 96 78-175 15-110 (126)
126 1a17_A Serine/threonine protei 98.6 1.9E-06 6.4E-11 69.2 16.7 94 219-314 16-109 (166)
127 1a17_A Serine/threonine protei 98.6 2E-06 6.9E-11 69.0 16.9 127 289-418 16-144 (166)
128 4gco_A Protein STI-1; structur 98.6 1.5E-06 5.2E-11 66.2 15.0 20 224-243 21-40 (126)
129 2qfc_A PLCR protein; TPR, HTH, 98.6 1.1E-05 3.7E-10 71.9 22.7 167 218-384 77-265 (293)
130 4f3v_A ESX-1 secretion system 98.6 1.6E-06 5.6E-11 75.0 16.4 190 53-246 18-238 (282)
131 2c2l_A CHIP, carboxy terminus 98.6 3E-07 1E-11 81.4 11.8 193 75-279 3-198 (281)
132 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 75.3 12.6 97 148-244 68-175 (203)
133 3gyz_A Chaperone protein IPGC; 98.6 3.3E-06 1.1E-10 66.5 16.1 95 323-419 38-132 (151)
134 2c2l_A CHIP, carboxy terminus 98.6 4.7E-07 1.6E-11 80.1 12.3 192 181-384 4-198 (281)
135 3gw4_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 74.9 12.5 155 124-279 5-175 (203)
136 4f3v_A ESX-1 secretion system 98.6 2.4E-06 8.1E-11 74.0 16.2 188 123-316 18-238 (282)
137 1na0_A Designed protein CTPR3; 98.6 3.2E-06 1.1E-10 63.9 15.5 21 222-242 15-35 (125)
138 2lni_A Stress-induced-phosphop 98.6 1.9E-06 6.4E-11 66.2 14.0 95 78-174 18-112 (133)
139 3dss_A Geranylgeranyl transfer 98.6 0.00011 3.7E-09 65.5 26.7 166 87-257 40-233 (331)
140 3dss_A Geranylgeranyl transfer 98.6 8E-05 2.8E-09 66.4 25.8 193 48-245 36-267 (331)
141 2vyi_A SGTA protein; chaperone 98.6 2.4E-06 8.2E-11 65.2 14.3 95 78-174 14-108 (131)
142 1na0_A Designed protein CTPR3; 98.6 5.3E-06 1.8E-10 62.6 16.1 112 288-402 11-122 (125)
143 3gyz_A Chaperone protein IPGC; 98.6 9.1E-07 3.1E-11 69.7 11.9 95 78-174 38-132 (151)
144 2vgx_A Chaperone SYCD; alterna 98.5 8E-07 2.7E-11 70.0 11.3 99 75-175 20-118 (148)
145 2vyi_A SGTA protein; chaperone 98.5 3.7E-06 1.3E-10 64.2 15.0 90 293-384 19-108 (131)
146 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.2E-11 65.3 14.1 92 184-277 19-110 (133)
147 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 71.4 12.6 19 365-383 124-142 (177)
148 2vgx_A Chaperone SYCD; alterna 98.5 1.2E-06 4.2E-11 69.0 11.5 93 324-418 24-116 (148)
149 1p5q_A FKBP52, FK506-binding p 98.5 4.3E-06 1.5E-10 76.0 16.1 87 252-340 197-283 (336)
150 1p5q_A FKBP52, FK506-binding p 98.5 4E-06 1.4E-10 76.2 15.6 96 321-418 196-292 (336)
151 3upv_A Heat shock protein STI1 98.4 5.4E-06 1.8E-10 63.1 13.4 97 77-175 5-101 (126)
152 2fbn_A 70 kDa peptidylprolyl i 98.4 5.3E-07 1.8E-11 75.1 8.1 123 147-271 39-176 (198)
153 4gcn_A Protein STI-1; structur 98.4 4.4E-06 1.5E-10 63.8 12.4 107 322-431 9-121 (127)
154 2xcb_A PCRH, regulatory protei 98.4 2E-06 6.9E-11 67.2 10.5 95 78-174 20-114 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.4 7.7E-07 2.6E-11 74.2 8.4 27 218-244 40-66 (198)
156 4gcn_A Protein STI-1; structur 98.4 7E-06 2.4E-10 62.6 12.8 96 78-174 10-111 (127)
157 3upv_A Heat shock protein STI1 98.4 1.2E-05 4.2E-10 61.0 13.9 95 323-419 6-100 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-05 5.9E-10 59.0 14.6 96 78-175 6-101 (118)
159 2xcb_A PCRH, regulatory protei 98.4 2.7E-06 9.1E-11 66.5 10.2 98 111-210 18-115 (142)
160 1elw_A TPR1-domain of HOP; HOP 98.4 3.2E-05 1.1E-09 57.5 15.9 91 292-384 10-100 (118)
161 2kck_A TPR repeat; tetratricop 98.3 7.2E-06 2.5E-10 60.5 11.8 96 78-175 8-106 (112)
162 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.6E-10 61.7 13.6 99 74-174 7-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.3 1.3E-05 4.5E-10 64.2 13.7 99 75-175 10-108 (164)
164 2dba_A Smooth muscle cell asso 98.3 2.4E-05 8.4E-10 61.1 15.1 94 45-141 32-129 (148)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 1.7E-05 5.8E-10 63.6 14.1 94 289-384 14-107 (164)
166 2kck_A TPR repeat; tetratricop 98.3 1.5E-05 5E-10 58.8 12.5 96 323-420 8-106 (112)
167 4b4t_Q 26S proteasome regulato 98.3 3.6E-05 1.2E-09 72.7 18.0 59 46-104 9-83 (434)
168 4b4t_Q 26S proteasome regulato 98.3 5.5E-05 1.9E-09 71.4 19.3 197 83-279 11-244 (434)
169 1elr_A TPR2A-domain of HOP; HO 98.3 9.5E-06 3.2E-10 61.8 11.5 98 77-175 5-108 (131)
170 3q49_B STIP1 homology and U bo 98.3 2.8E-05 9.4E-10 60.0 14.1 98 320-419 8-105 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.3 9.9E-06 3.4E-10 61.7 11.4 96 323-419 6-107 (131)
172 2dba_A Smooth muscle cell asso 98.2 5.4E-05 1.8E-09 59.1 15.4 96 146-244 28-127 (148)
173 1dce_A Protein (RAB geranylger 98.2 5.4E-05 1.8E-09 73.7 18.1 175 301-481 44-245 (567)
174 1hxi_A PEX5, peroxisome target 98.2 8.3E-06 2.8E-10 61.5 9.8 94 45-140 21-114 (121)
175 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.9E-10 60.8 10.4 95 79-175 20-114 (121)
176 1wao_1 Serine/threonine protei 98.1 7.8E-06 2.7E-10 78.1 9.3 120 48-170 13-134 (477)
177 3k9i_A BH0479 protein; putativ 98.1 8.4E-06 2.9E-10 61.1 7.5 86 54-140 3-90 (117)
178 2xev_A YBGF; tetratricopeptide 98.1 8.6E-05 2.9E-09 56.4 13.5 92 82-175 8-105 (129)
179 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.6E-10 62.7 10.0 131 289-419 12-157 (164)
180 3ro3_A PINS homolog, G-protein 98.1 2.7E-05 9.1E-10 61.8 10.4 60 78-137 11-75 (164)
181 2xev_A YBGF; tetratricopeptide 98.0 0.00024 8.1E-09 53.9 14.9 60 359-419 42-104 (129)
182 1wao_1 Serine/threonine protei 98.0 1.7E-05 5.7E-10 75.8 9.7 117 296-415 16-134 (477)
183 3rkv_A Putative peptidylprolyl 98.0 7.7E-05 2.6E-09 59.5 12.3 98 77-175 12-126 (162)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00011 3.7E-09 69.8 14.7 86 289-376 320-405 (457)
185 1dce_A Protein (RAB geranylger 98.0 0.00055 1.9E-08 66.6 19.9 170 93-267 46-242 (567)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 9.9E-05 3.4E-09 70.1 14.3 96 321-418 317-413 (457)
187 1ihg_A Cyclophilin 40; ppiase 98.0 9.4E-05 3.2E-09 68.0 13.4 90 145-236 272-361 (370)
188 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.9E-10 59.8 6.5 86 89-175 3-90 (117)
189 3rkv_A Putative peptidylprolyl 98.0 0.00014 4.8E-09 58.0 12.6 61 323-384 65-125 (162)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.3E-09 67.1 13.3 137 218-376 225-361 (370)
191 2hr2_A Hypothetical protein; a 97.9 0.00024 8.1E-09 55.4 11.6 96 78-174 13-130 (159)
192 1klx_A Cysteine rich protein B 97.8 0.00099 3.4E-08 51.3 14.0 111 55-176 9-127 (138)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00011 3.9E-09 66.6 9.9 141 48-210 186-328 (338)
194 1klx_A Cysteine rich protein B 97.8 0.00086 2.9E-08 51.6 13.5 110 126-246 10-127 (138)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4.3E-09 66.3 10.0 114 216-349 179-292 (338)
196 2hr2_A Hypothetical protein; a 97.7 0.0006 2.1E-08 53.1 12.2 24 395-418 106-129 (159)
197 2l6j_A TPR repeat-containing p 97.7 7.8E-05 2.7E-09 54.8 6.6 90 76-167 4-99 (111)
198 3n71_A Histone lysine methyltr 97.7 0.00014 4.9E-09 69.0 9.6 86 122-207 320-419 (490)
199 3n71_A Histone lysine methyltr 97.7 0.00019 6.7E-09 68.1 10.4 125 86-210 319-464 (490)
200 2l6j_A TPR repeat-containing p 97.7 3.7E-05 1.3E-09 56.6 4.4 60 324-384 7-66 (111)
201 2kat_A Uncharacterized protein 97.6 0.00027 9.2E-09 52.4 8.7 78 305-384 4-81 (115)
202 2kat_A Uncharacterized protein 97.6 0.00048 1.7E-08 51.0 9.9 79 59-139 3-81 (115)
203 1na3_A Designed protein CTPR2; 97.6 0.00057 2E-08 47.8 9.7 78 77-156 10-87 (91)
204 1zu2_A Mitochondrial import re 97.5 0.00021 7.3E-09 55.6 7.2 89 50-140 11-120 (158)
205 1zu2_A Mitochondrial import re 97.5 0.00027 9.1E-09 55.0 7.3 99 87-189 13-132 (158)
206 1na3_A Designed protein CTPR2; 97.4 0.0022 7.6E-08 44.7 10.8 61 323-384 11-71 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.7E-08 47.7 7.8 59 323-382 9-67 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.002 7E-08 46.2 8.9 63 75-138 6-68 (100)
209 3ly7_A Transcriptional activat 97.1 0.019 6.6E-07 51.4 15.2 142 283-429 191-346 (372)
210 3ly7_A Transcriptional activat 96.8 0.04 1.4E-06 49.4 14.9 70 320-393 276-345 (372)
211 3qww_A SET and MYND domain-con 96.8 0.0041 1.4E-07 58.0 8.8 87 333-419 310-410 (433)
212 3qwp_A SET and MYND domain-con 96.7 0.0068 2.3E-07 56.6 9.9 92 328-419 294-399 (429)
213 2kc7_A BFR218_protein; tetratr 96.6 0.0061 2.1E-07 43.3 6.9 55 50-105 9-64 (99)
214 3bee_A Putative YFRE protein; 96.5 0.036 1.2E-06 38.8 10.2 68 73-141 3-73 (93)
215 3mkq_A Coatomer beta'-subunit; 96.5 0.056 1.9E-06 55.4 15.6 150 122-310 610-760 (814)
216 3qww_A SET and MYND domain-con 96.5 0.0086 2.9E-07 55.8 8.5 63 147-209 341-410 (433)
217 2kc7_A BFR218_protein; tetratr 96.4 0.029 1E-06 39.6 9.5 59 82-141 6-65 (99)
218 3qwp_A SET and MYND domain-con 96.4 0.018 6.2E-07 53.7 10.1 90 120-209 296-399 (429)
219 3mkq_A Coatomer beta'-subunit; 96.2 0.1 3.5E-06 53.4 16.1 153 227-418 610-763 (814)
220 1pc2_A Mitochondria fission pr 96.2 0.048 1.6E-06 41.9 9.8 80 338-419 15-99 (152)
221 3bee_A Putative YFRE protein; 96.0 0.084 2.9E-06 36.9 9.9 67 108-175 3-72 (93)
222 3mkq_B Coatomer subunit alpha; 95.9 0.39 1.3E-05 37.8 14.2 101 296-417 15-115 (177)
223 2v5f_A Prolyl 4-hydroxylase su 95.9 0.085 2.9E-06 37.8 9.9 66 75-140 4-75 (104)
224 1wy6_A Hypothetical protein ST 95.8 0.37 1.3E-05 35.7 15.5 137 229-387 20-156 (172)
225 3mkq_B Coatomer subunit alpha; 95.7 0.55 1.9E-05 37.0 15.7 45 87-137 16-60 (177)
226 1pc2_A Mitochondria fission pr 95.7 0.11 3.8E-06 39.9 9.9 81 58-139 15-99 (152)
227 3u64_A Protein TP_0956; tetrat 95.5 0.14 4.9E-06 43.9 11.0 96 337-434 179-285 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.4 0.19 6.5E-06 35.9 10.0 63 218-280 7-75 (104)
229 1wy6_A Hypothetical protein ST 95.4 0.57 2E-05 34.7 14.0 68 355-423 90-157 (172)
230 4h7y_A Dual specificity protei 95.2 0.15 5.1E-06 38.7 8.8 118 320-441 12-142 (161)
231 4b4t_P 26S proteasome regulato 94.9 2.5 8.6E-05 39.4 20.0 201 42-244 18-246 (445)
232 3u64_A Protein TP_0956; tetrat 94.7 0.22 7.5E-06 42.8 9.8 83 94-176 181-270 (301)
233 1nzn_A CGI-135 protein, fissio 94.4 0.38 1.3E-05 35.4 9.1 82 337-420 17-103 (126)
234 1nzn_A CGI-135 protein, fissio 93.7 0.54 1.8E-05 34.6 8.9 80 94-174 19-102 (126)
235 4h7y_A Dual specificity protei 93.7 1.7 6E-05 33.0 12.4 51 300-351 74-124 (161)
236 3lvg_A Clathrin heavy chain 1; 93.5 0.00037 1.3E-08 63.8 -9.9 265 40-341 53-324 (624)
237 4gns_B Protein CSD3, chitin bi 93.4 0.44 1.5E-05 47.4 10.4 131 112-243 249-398 (754)
238 3lvg_A Clathrin heavy chain 1; 92.3 1.8E-05 6.1E-10 72.2 -20.1 326 76-448 54-387 (624)
239 4gns_B Protein CSD3, chitin bi 92.3 2.5 8.4E-05 42.2 13.9 127 220-347 252-397 (754)
240 4fhn_B Nucleoporin NUP120; pro 92.0 11 0.00037 40.2 19.5 55 79-138 815-869 (1139)
241 2ff4_A Probable regulatory pro 91.9 0.82 2.8E-05 41.9 9.7 73 360-433 175-252 (388)
242 1v54_E Cytochrome C oxidase po 91.5 2 6.8E-05 29.9 8.6 63 92-155 26-88 (109)
243 1v54_E Cytochrome C oxidase po 91.3 2.7 9.1E-05 29.3 9.0 49 267-315 26-74 (109)
244 2ff4_A Probable regulatory pro 90.7 1.9 6.4E-05 39.5 10.7 74 113-187 173-251 (388)
245 4ady_A RPN2, 26S proteasome re 90.6 17 0.00057 37.3 26.7 258 153-419 381-657 (963)
246 4b4t_P 26S proteasome regulato 90.1 12 0.00041 34.8 20.5 187 160-348 30-245 (445)
247 2y69_E Cytochrome C oxidase su 88.6 4.7 0.00016 29.8 9.0 62 267-329 69-130 (152)
248 2y69_E Cytochrome C oxidase su 88.3 4.2 0.00014 30.1 8.6 62 93-155 70-131 (152)
249 4ady_A RPN2, 26S proteasome re 87.1 29 0.00099 35.6 30.8 26 114-139 233-258 (963)
250 3ffl_A Anaphase-promoting comp 86.8 3.8 0.00013 31.7 8.2 60 45-104 24-91 (167)
251 4fhn_B Nucleoporin NUP120; pro 86.4 13 0.00046 39.4 15.1 147 186-339 817-989 (1139)
252 3o48_A Mitochondria fission 1 86.2 8.5 0.00029 28.5 10.1 71 353-425 37-110 (134)
253 1qsa_A Protein (soluble lytic 85.9 27 0.00093 34.0 28.0 78 113-196 74-151 (618)
254 3ffl_A Anaphase-promoting comp 84.7 6.1 0.00021 30.6 8.4 117 289-418 23-149 (167)
255 1y8m_A FIS1; mitochondria, unk 83.5 12 0.00042 28.1 12.4 71 353-425 36-109 (144)
256 2wpv_A GET4, UPF0363 protein Y 83.1 23 0.00078 30.9 20.7 163 117-313 39-215 (312)
257 3o48_A Mitochondria fission 1 83.1 12 0.00041 27.7 9.7 66 215-280 39-107 (134)
258 1zbp_A Hypothetical protein VP 82.5 5.2 0.00018 33.9 7.8 58 48-106 4-61 (273)
259 4b4t_R RPN7, 26S proteasome re 81.5 16 0.00055 33.8 11.8 60 148-207 133-194 (429)
260 3esl_A Checkpoint serine/threo 81.3 16 0.00056 29.3 9.9 57 369-425 92-149 (202)
261 4b4t_R RPN7, 26S proteasome re 79.9 15 0.00051 34.0 11.0 60 288-347 133-194 (429)
262 1zbp_A Hypothetical protein VP 79.9 7.5 0.00026 32.9 7.9 116 84-210 5-129 (273)
263 3txn_A 26S proteasome regulato 79.3 37 0.0013 30.8 22.5 294 113-421 21-344 (394)
264 3lpz_A GET4 (YOR164C homolog); 77.8 36 0.0012 30.0 21.5 165 116-314 40-215 (336)
265 1y8m_A FIS1; mitochondria, unk 76.5 22 0.00075 26.7 12.2 68 318-385 36-106 (144)
266 2wpv_A GET4, UPF0363 protein Y 75.9 40 0.0014 29.4 22.5 25 320-344 133-157 (312)
267 2uwj_G Type III export protein 74.4 19 0.00065 25.0 7.4 78 91-176 21-98 (115)
268 2p58_C Putative type III secre 73.8 20 0.00068 24.9 8.0 78 91-176 22-99 (116)
269 4a1g_A Mitotic checkpoint seri 70.2 34 0.0011 26.1 9.5 53 374-426 83-136 (152)
270 3esl_A Checkpoint serine/threo 65.2 52 0.0018 26.4 10.2 53 127-179 95-148 (202)
271 3eiq_C Programmed cell death p 64.0 80 0.0027 28.1 11.9 63 290-353 221-285 (358)
272 1wdy_A 2-5A-dependent ribonucl 63.8 31 0.0011 29.1 8.7 11 86-96 12-22 (285)
273 2wvi_A Mitotic checkpoint seri 63.4 50 0.0017 25.5 9.6 54 374-427 78-132 (164)
274 2uwj_G Type III export protein 62.2 37 0.0013 23.6 6.8 78 160-245 20-97 (115)
275 2p58_C Putative type III secre 61.1 39 0.0013 23.5 7.5 78 160-245 21-98 (116)
276 3eiq_C Programmed cell death p 59.8 96 0.0033 27.7 11.8 24 80-103 58-81 (358)
277 1wdy_A 2-5A-dependent ribonucl 59.4 43 0.0015 28.2 8.8 20 117-136 8-27 (285)
278 4fke_A Aminopeptidase N; zinc 57.9 1.7E+02 0.006 30.1 15.6 159 291-455 691-860 (909)
279 3ltm_A Alpha-REP4; protein eng 57.1 73 0.0025 25.4 18.9 17 250-266 94-110 (211)
280 1bpo_A Protein (clathrin); cla 56.3 1.3E+02 0.0043 28.0 12.1 98 105-204 355-452 (494)
281 3lpz_A GET4 (YOR164C homolog); 55.8 1.1E+02 0.0037 27.0 26.0 67 184-265 38-108 (336)
282 3txn_A 26S proteasome regulato 55.0 1.2E+02 0.0042 27.4 24.0 132 146-278 19-166 (394)
283 2d2s_A Exocyst complex compone 53.4 93 0.0032 25.8 9.2 88 153-243 25-118 (235)
284 4g8k_A 2-5A-dependent ribonucl 53.3 1.1E+02 0.0039 26.5 11.9 12 87-98 33-44 (337)
285 3eu9_A Huntingtin-interacting 51.6 52 0.0018 26.7 7.8 9 52-60 17-25 (240)
286 4g8k_A 2-5A-dependent ribonucl 51.1 1.1E+02 0.0037 26.7 10.2 47 47-98 28-78 (337)
287 4aez_C MAD3, mitotic spindle c 50.0 52 0.0018 26.9 6.9 53 373-425 131-184 (223)
288 2fe3_A Peroxide operon regulat 48.9 82 0.0028 23.6 7.8 59 67-126 13-71 (145)
289 2ion_A PDCD4, programmed cell 46.8 93 0.0032 23.6 8.0 63 219-282 12-76 (152)
290 2xig_A Ferric uptake regulatio 46.4 93 0.0032 23.5 7.8 60 206-266 17-76 (150)
291 2d2s_A Exocyst complex compone 45.8 1.3E+02 0.0044 24.9 9.4 21 293-313 25-45 (235)
292 3kea_A K1L; tropism, ANK repea 45.3 66 0.0022 27.4 7.6 51 187-241 132-183 (285)
293 2fe3_A Peroxide operon regulat 44.8 93 0.0032 23.3 7.4 59 206-265 12-70 (145)
294 4a1g_A Mitotic checkpoint seri 43.9 1E+02 0.0036 23.4 9.5 52 130-181 84-136 (152)
295 1k1a_A B-cell lymphoma 3-encod 43.4 1.3E+02 0.0044 24.3 9.0 8 193-200 88-95 (241)
296 3eyy_A Putative iron uptake re 42.9 78 0.0027 23.7 6.7 58 67-126 10-67 (145)
297 3ltm_A Alpha-REP4; protein eng 42.9 1.2E+02 0.0042 24.0 21.3 154 74-244 31-184 (211)
298 1mzb_A Ferric uptake regulatio 42.5 87 0.003 23.1 6.9 59 67-126 9-68 (136)
299 2nsz_A Programmed cell death p 42.1 99 0.0034 22.6 9.3 62 220-282 11-74 (129)
300 3hra_A Ankyrin repeat family p 41.7 96 0.0033 24.2 7.7 12 123-134 14-25 (201)
301 4b4t_S RPN3, 26S proteasome re 41.4 1.5E+02 0.0051 28.0 9.5 66 145-210 230-299 (523)
302 4ets_A Ferric uptake regulatio 40.1 1E+02 0.0034 23.7 7.0 68 58-126 14-84 (162)
303 2ion_A PDCD4, programmed cell 39.4 1.2E+02 0.0042 22.9 8.2 21 292-312 15-35 (152)
304 1qsa_A Protein (soluble lytic 39.0 2.8E+02 0.0096 27.0 35.3 313 80-414 76-436 (618)
305 2w57_A Ferric uptake regulatio 38.6 94 0.0032 23.5 6.6 60 67-127 8-68 (150)
306 2r9g_A AAA ATPase, central reg 38.6 1.5E+02 0.0052 23.7 9.9 17 195-211 28-44 (204)
307 3hra_A Ankyrin repeat family p 38.0 96 0.0033 24.2 7.1 17 49-65 10-26 (201)
308 3bge_A Predicted ATPase; struc 37.1 1.6E+02 0.0054 23.5 8.6 38 333-370 19-56 (201)
309 1mzb_A Ferric uptake regulatio 36.2 1E+02 0.0035 22.7 6.4 58 207-265 9-67 (136)
310 3kae_A CDC27, possible protein 35.7 1.6E+02 0.0054 23.0 7.2 55 190-244 71-142 (242)
311 2wvi_A Mitotic checkpoint seri 35.5 1.5E+02 0.0052 22.8 9.7 51 130-180 79-130 (164)
312 3ctd_A Putative ATPase, AAA fa 35.4 1.8E+02 0.006 23.5 8.9 55 333-387 47-106 (213)
313 3pvs_A Replication-associated 35.2 2.7E+02 0.0093 25.7 13.3 55 228-282 267-326 (447)
314 2zu6_B Programmed cell death p 34.8 2.3E+02 0.0077 24.6 10.1 25 149-173 6-30 (307)
315 3rjo_A Endoplasmic reticulum a 34.2 2.7E+02 0.0092 25.3 17.6 91 254-351 200-297 (419)
316 3bu8_A Telomeric repeat-bindin 34.0 1.9E+02 0.0064 23.5 8.5 85 55-140 33-143 (235)
317 2r9g_A AAA ATPase, central reg 33.9 1.8E+02 0.0062 23.2 10.4 37 228-265 26-62 (204)
318 3eyy_A Putative iron uptake re 33.8 94 0.0032 23.3 5.8 58 206-265 9-66 (145)
319 2jul_A Calsenilin; EF-hand, ca 33.6 2E+02 0.007 23.7 13.0 25 217-241 230-254 (256)
320 2nsz_A Programmed cell death p 33.3 1.4E+02 0.0048 21.8 9.6 21 292-312 13-33 (129)
321 1n11_A Ankyrin; clathrin, BAND 33.2 1.7E+02 0.0059 26.5 8.9 332 47-425 17-371 (437)
322 3jxi_A Vanilloid receptor-rela 32.8 21 0.00073 29.9 2.3 21 86-106 12-32 (260)
323 1k1a_A B-cell lymphoma 3-encod 32.7 1.9E+02 0.0066 23.2 9.1 24 48-71 13-36 (241)
324 2w57_A Ferric uptake regulatio 32.3 1.1E+02 0.0038 23.0 6.1 59 207-266 8-67 (150)
325 3jxi_A Vanilloid receptor-rela 32.3 33 0.0011 28.6 3.5 22 120-141 11-32 (260)
326 1oxz_A ADP-ribosylation factor 32.0 1.5E+02 0.0052 23.4 6.8 25 45-69 35-62 (186)
327 3bge_A Predicted ATPase; struc 31.5 2E+02 0.0068 23.0 8.9 19 195-213 21-39 (201)
328 4ets_A Ferric uptake regulatio 31.3 1.3E+02 0.0045 23.0 6.4 59 207-266 24-84 (162)
329 2xig_A Ferric uptake regulatio 31.2 1.7E+02 0.0057 22.0 8.2 58 137-195 18-75 (150)
330 4gq2_M Nucleoporin NUP120; bet 31.1 3.8E+02 0.013 27.8 11.6 87 327-419 816-925 (950)
331 2ijq_A Hypothetical protein; s 31.0 1.8E+02 0.0061 22.3 7.8 54 86-139 42-103 (161)
332 3kae_A CDC27, possible protein 31.0 1.9E+02 0.0065 22.6 7.4 59 183-247 34-93 (242)
333 2b7e_A PRE-mRNA processing pro 30.6 24 0.00082 21.7 1.6 10 182-191 22-31 (59)
334 1bpo_A Protein (clathrin); cla 30.5 3.3E+02 0.011 25.3 13.0 141 54-207 342-482 (494)
335 4gq2_M Nucleoporin NUP120; bet 30.4 4.8E+02 0.016 27.0 13.9 133 80-230 814-950 (950)
336 4aez_C MAD3, mitotic spindle c 30.1 2.3E+02 0.0077 23.2 8.0 51 163-213 131-182 (223)
337 3kea_A K1L; tropism, ANK repea 28.9 1.7E+02 0.0059 24.7 7.6 11 191-201 102-112 (285)
338 3vu7_H DNA repair protein REV1 28.3 71 0.0024 23.3 4.0 29 76-104 60-88 (124)
339 2ijq_A Hypothetical protein; s 28.3 2E+02 0.0069 22.0 8.3 50 125-174 46-103 (161)
340 1ug3_A EIF4GI, eukaryotic prot 28.0 3.1E+02 0.011 24.1 10.1 25 114-138 14-38 (339)
341 2rfa_A Transient receptor pote 27.9 2.1E+02 0.0072 22.8 7.8 15 297-311 205-219 (232)
342 3t8k_A Uncharacterized protein 27.5 2.2E+02 0.0074 22.2 8.8 13 236-248 94-106 (186)
343 3l6a_A Eukaryotic translation 27.0 3.4E+02 0.012 24.2 11.4 64 183-250 14-82 (364)
344 1wty_A Hypothetical protein TT 26.7 1.8E+02 0.006 20.8 6.3 28 337-366 4-31 (119)
345 3mwm_A ZUR, putative metal upt 26.7 1.3E+02 0.0045 22.3 5.5 48 149-196 16-63 (139)
346 3ctd_A Putative ATPase, AAA fa 26.1 2.6E+02 0.0089 22.6 9.9 32 195-226 49-80 (213)
347 3pvs_A Replication-associated 25.7 4E+02 0.014 24.6 14.6 54 334-387 268-326 (447)
348 3t8k_A Uncharacterized protein 25.2 2.4E+02 0.0082 21.9 8.6 92 122-216 14-109 (186)
349 3mv2_A Coatomer subunit alpha; 25.0 3.5E+02 0.012 23.6 15.7 181 46-248 33-239 (325)
350 2o03_A Probable zinc uptake re 24.8 1.6E+02 0.0054 21.5 5.6 45 151-195 15-59 (131)
351 1ug3_A EIF4GI, eukaryotic prot 24.4 1.6E+02 0.0054 26.0 6.5 25 219-243 14-38 (339)
352 3e3v_A Regulatory protein RECX 23.7 2.4E+02 0.0083 21.9 6.8 52 336-388 48-99 (177)
353 4b4t_S RPN3, 26S proteasome re 23.5 4.7E+02 0.016 24.7 12.8 127 110-241 230-366 (523)
354 2o03_A Probable zinc uptake re 23.4 1.4E+02 0.0049 21.7 5.2 46 221-266 15-60 (131)
355 3ubw_A 14-3-3E, 14-3-3 protein 23.3 3.3E+02 0.011 22.8 10.5 47 373-419 173-227 (261)
356 3ltj_A Alpharep-4; protein eng 23.0 2.7E+02 0.0092 21.6 20.0 186 97-302 14-199 (201)
357 2fu4_A Ferric uptake regulatio 22.3 1.7E+02 0.0057 19.0 6.5 58 67-125 8-66 (83)
358 1bd8_A P19INK4D CDK4/6 inhibit 21.2 1.2E+02 0.0041 22.4 4.6 15 87-101 10-24 (156)
359 2f6m_A Suppressor protein STP2 20.9 1.7E+02 0.0057 18.4 4.5 39 325-364 6-44 (65)
360 1q02_A Sequestosome 1; helical 20.8 1.4E+02 0.0049 17.6 4.6 38 60-99 10-47 (52)
361 2zu6_B Programmed cell death p 20.3 4.2E+02 0.014 22.9 14.2 25 79-103 6-30 (307)
362 2rfa_A Transient receptor pote 20.1 3.3E+02 0.011 21.6 8.2 55 294-349 159-222 (232)
363 2yru_A Steroid receptor RNA ac 20.1 1.8E+02 0.0063 20.9 4.9 20 365-384 70-89 (118)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=322.04 Aligned_cols=430 Identities=10% Similarity=-0.017 Sum_probs=377.5
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
..++..+.+.|++++|+.+|+++.. ..|+..++..++..|.+.|++++|..+++.+... +++..+++.++.+|.+.
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHH
Confidence 4577788889999999999999985 4578889999999999999999999999988654 67899999999999999
Q ss_pred CCHHHHHHHHHHhhhC---------------CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH--
Q 041882 125 HLVDKAIEVFNRMTSF---------------DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-- 187 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-- 187 (491)
|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+.. +...+..+
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999999964332 22346889999999999999999999999999886422 23333322
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 188 ------------------------------------IKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 188 ------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTC
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcC
Confidence 44566788999999999998875 5799999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999987543 77789999999999999999999999998764 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL 391 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 391 (491)
+.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 399 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9886544 78899999999999999999999999998864 5678899999999999999999999999999864 3478
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKR----KMRFD--LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
.+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..++++.|+.+++.+.++++.+.+ |++...+
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 553 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHH
Confidence 89999999999999999999999999876 66787 7899999999999999999999999988776 8889999
Q ss_pred HHHHHHhcCCCcchhhhhHhhhh
Q 041882 466 VDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 466 ~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
..++..|...|+++++..+.++.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999998886653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-36 Score=299.38 Aligned_cols=417 Identities=13% Similarity=0.054 Sum_probs=364.7
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc---------------CCCC
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDF---------------NIRC 109 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~ 109 (491)
..+...+...|++++|+.+|+.+.. .+++..++..++..+.+.|++++|.++|+.+... +.+.
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 3466778889999999999998865 3688999999999999999999999999853221 2234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH-------------------------------------
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL------------------------------------- 152 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------- 152 (491)
+..+++.++..|.+.|++++|+++|+++...+.. +...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 5789999999999999999999999999876532 44444433
Q ss_pred -HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 153 -LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 153 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGE 354 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCC
Confidence 44556778999999999998865 578999999999999999999999999999987644 78899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998763 4478899999999999999999999999998864 45678999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RH 387 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 387 (491)
+.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9987554 78899999999999999999999999998764 567899999999999999999999999999886 55
Q ss_pred CCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 388 CPR--LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 388 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
.|+ ..+|..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..++...|+.+++.+.++++.+.. |++...+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHH
Confidence 677 7899999999999999999999999999864 3478999999999999999999999999888765 9999999
Q ss_pred HHHHHHhcC
Q 041882 466 VDLLWTYLG 474 (491)
Q Consensus 466 ~~l~~~~~~ 474 (491)
..++.+|..
T Consensus 588 ~~l~~~~~~ 596 (597)
T 2xpi_A 588 DLLKRALEE 596 (597)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999988754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.5e-29 Score=235.05 Aligned_cols=361 Identities=16% Similarity=0.074 Sum_probs=177.7
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3444555566666666665555432 3334445555555555666666666665555544 4455556666666666666
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+++|+..|+++.... +.+..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666666666555443 1234455555555555566666666555555442 22 2334444455555555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (491)
++.+.... +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 55544221 3445555555555555555555555555544222 34444444555555555555555555444432 222
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041882 286 LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG 365 (491)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 365 (491)
..++..+..++.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 344444444444444444444444444443222 33444444444444444444444444444332 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444321 1223344444444444444444444444444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-28 Score=231.54 Aligned_cols=384 Identities=12% Similarity=0.031 Sum_probs=338.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...... +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556778999999999999998876 6677888889999999999999999999988765 4488999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998763 224567999999999999999999999999887433 566788889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041882 242 MIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV 321 (491)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (491)
+.+.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 9987433 67899999999999999999999999999875 455778889999999999999999999999887554 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.++..+...|...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999864 4567889999999999999999999999999863 45788999999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCc
Q 041882 402 LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGT 477 (491)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~ 477 (491)
...|++++|...++++.+. .+.+...+..+...++..|+.++++..++++.+. .|++...+..+++++..+|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999975 2345789999999999999999999999988875 49999999999999988774
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.3e-30 Score=249.59 Aligned_cols=212 Identities=13% Similarity=0.198 Sum_probs=110.9
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTV-VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 44455555555544333 246666677777777777777777777777777777777777766655432110
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAAT 358 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (491)
.+.+.++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01112344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 437 (491)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..++
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-30 Score=249.84 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC---------hhhH
Q 041882 96 ETVLGYIQDFNIRCKE-TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR---------VDDA 165 (491)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 165 (491)
..+.+.+.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|+..+. .+.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444443333 34566666666666666666666666666666666666666666665443 4566
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 166 KRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 246 GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
|+.||..||+++|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.5e-24 Score=207.04 Aligned_cols=415 Identities=10% Similarity=0.015 Sum_probs=316.9
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.....+...|++++|+..|+++...+ |+...+..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999865 689999999999999999999999999999887 667889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH----------------------------------
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD---------------------------------- 171 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------------------------------- 171 (491)
++++|+..|+++...+. ++......++..+........+.+.+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999988763 2433444444433332222222111111
Q ss_pred -HHHCCCC--------C-CHHhHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCC--------CCChhhHHHHHHH
Q 041882 172 -ADKMGFR--------P-NLISFNVMIKGRLK---KGEWEEASRVFDEMLE-----REV--------PPTVVTYNSLIGF 225 (491)
Q Consensus 172 -~~~~~~~--------p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~ 225 (491)
+...... | +...+......+.. .|++++|..+|+++.+ ... +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 1000000 1 13333344444443 7899999999999887 311 2235677888889
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHH
Q 041882 226 LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEA 305 (491)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 305 (491)
+...|++++|...++++.+.... ..++..+..++...|++++|...++.+.... +.+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999887544 7788888899999999999999999988764 44667788888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999887554 67788888899999999999999999988753 445678888888999999999999999988874
Q ss_pred CCC-CC----HHhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhh
Q 041882 386 RHC-PR----LETFSCLLVGLLK---GGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSM 457 (491)
Q Consensus 386 ~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~ 457 (491)
... ++ ...+..+..++.. .|++++|...++++.+.. ..+...+..+...+...|+.+++...+++..+..
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 479 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA- 479 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-
Confidence 211 11 3378888899999 999999999999988753 3357788888888999999999999998877765
Q ss_pred hhhhhHHHHHHHHHh
Q 041882 458 AISSVMNVVDLLWTY 472 (491)
Q Consensus 458 ~~~~~~~~~~l~~~~ 472 (491)
|++...+..+.+..
T Consensus 480 -~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 480 -RTMEEKLQAITFAE 493 (514)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHH
Confidence 77666666555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-23 Score=205.66 Aligned_cols=374 Identities=13% Similarity=0.034 Sum_probs=292.9
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
+..+...+...|++++|+..|+.+.+.+ +.+..++..+..++.+.|++++|...|+.+...+ +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHH
Confidence 3446677788999999999999999865 5677899999999999999999999999999887 4444444444444433
Q ss_pred cCCHHHHHHHHHHhh-----------------------------------hCCC---------CcCHHHHHHHHHHHHh-
Q 041882 124 AHLVDKAIEVFNRMT-----------------------------------SFDC---------VRTLQSFNSLLDILVD- 158 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~-----------------------------------~~~~---------~~~~~~~~~ll~~~~~- 158 (491)
......+.+.+..+. .... +.+...+......+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 322222222221110 0000 1124455555555554
Q ss_pred --CCChhhHHHHHHHHHH-----CCCCC--------CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 159 --NDRVDDAKRMFDDADK-----MGFRP--------NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 159 --~~~~~~a~~~~~~~~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
.|++++|...|+++.+ ....| +...+..+...+...|++++|...|+.+.+.... ...+..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHH
Confidence 8999999999999987 31122 3456778888999999999999999999887543 88899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChH
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
.++...|++++|...++.+.+.... +..++..+...+...|++++|...++...+.. +.+...+..+...+...|+++
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999886433 67788899999999999999999999998875 445678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHH
Q 041882 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-KPN----AATYRMMVDGFLR---VEDFEGS 375 (491)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~~~~~~a 375 (491)
+|...++.+.+.... +...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|
T Consensus 356 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 356 DCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 999999999887544 677889999999999999999999999876421 111 3478888999999 9999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
...++++.+.. +.+...+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 435 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 435 TNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999864 346788899999999999999999999999975 44433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.4e-23 Score=196.95 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=195.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+...+...|++++|+..|+++...+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 3445566667777777777777777777777654 45667777777777777777777777777766542 256677777
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCH----HhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNL----ISFNVM------------IKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
..++...|++++|...|+++.+.. |+. ..+..+ ...+...|++++|...|+.+.+... .+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 777777777777777777776643 332 344333 3336667777777777777766532 256
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH----
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL---- 292 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 292 (491)
..+..+..+|...|++++|...|+++.+... .+..++..+..+|...|++++|...++.+.... +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 6677777777777777777777777766532 256677777777777777777777777776552 2223333332
Q ss_pred --------HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 293 --------MSDLGKRGKIEEAKSLLSEMKKRQYKPD----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 293 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
...+.+.|++++|...|+.+.+..+. + ..+|..+...+.+.|++++|...++++.+.. +.+..++.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 55666666666666666666654322 2 2355666666666666666666666665532 33556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+..+|...|++++|...++++.+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666666666663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.1e-22 Score=195.32 Aligned_cols=327 Identities=13% Similarity=0.061 Sum_probs=268.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 95 VETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 95 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+...+..+.... +.+...+..++..+.+.|++++|+.+|+++.... +.+..+|..+..++...|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444443 5677889999999999999999999999998764 34789999999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHhcCChhHHHHHH
Q 041882 175 MGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV---VTYNSL------------IGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 175 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~ 239 (491)
.+ +.+...+..+..++.+.|++++|.+.|+.+.+.... +. ..+..+ ...+...|++++|+..|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 335788899999999999999999999999986432 34 555555 44488999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 240 EDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
+++.+... .+..++..+..+|...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++....+.
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 243 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 243 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99998743 378889999999999999999999999998864 556788999999999999999999999999886544
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 320 DVVTYNIL------------INYLCKEDRAAEAYKVLTEMQIGGCKPN-----AATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 320 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555 78899999999999999999874 344 447888889999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 041882 383 LTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLV 433 (491)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 433 (491)
.+.. +.+...|..+..+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 8853 346889999999999999999999999999974 444 55555555
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.7e-22 Score=194.86 Aligned_cols=398 Identities=11% Similarity=0.037 Sum_probs=275.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
......+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|.+.++.+.+.+ +.+...+..+...+...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 345566788899999999999998765 5678899999999999999999999999999887 66788999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCCCHHhH--------------
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRPNLISF-------------- 184 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~~-------------- 184 (491)
|++++|+..|+.+.. . |+ .....+..+...+....|...++++... ...|+....
T Consensus 107 g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999974422 1 22 1122233444444556666666666432 111221111
Q ss_pred ----------------HHHHHHHH--------hcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChh
Q 041882 185 ----------------NVMIKGRL--------KKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 185 ----------------~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~ 233 (491)
..+...+. ..|++++|..+++.+.+.... +. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11111111 124677788888887765322 22 24556667777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
+|...++.+.+.. |+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888887753 446677777788888888888888888877764 4456677778888888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 041882 314 KRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-----HC 388 (491)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~ 388 (491)
+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76544 56677778888888888888888888877653 4456677777888888888888888888877642 11
Q ss_pred CCHHhHHHHHHHHHcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 389 PRLETFSCLLVGLLKG----------GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
.....+.....++... |++++|...++++.+.. +.+...+..+...+...|+.+++...+++..+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1122244445666666 88888888888887652 2356777778888888888888888887776654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=8.7e-22 Score=193.54 Aligned_cols=398 Identities=12% Similarity=0.055 Sum_probs=308.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|++.|+++...+. .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999887 67889999999999999999999999999988763 478899999999
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCChh------------
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE------VPPTVV------------ 217 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------ 217 (491)
+...|++++|...|+.+ .. .|+. ....+..+...+....|...++.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 22 2332 2223344555555677888887775431 111111
Q ss_pred ------------------hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhc
Q 041882 218 ------------------TYNSLIGFLCR--------TGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFK 264 (491)
Q Consensus 218 ------------------~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~ 264 (491)
....+...+.. .|++++|..+++++.+.... +. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 11222222211 24789999999999876433 32 3466677788899
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
|++++|...++...+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999987 455788888999999999999999999999987654 7889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM-- 422 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 422 (491)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998764 4456788899999999999999999999999864 34577889999999999999999999999875421
Q ss_pred ---CCCHHHHHHHHHHHHhc----------CCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 423 ---RFDLKAWEGLVTDACIG----------DGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 423 ---~~~~~~~~~ll~~~~~~----------~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
......+......+... |+.++++..+++..+.. |++...+..++++|...|++.++..+.++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222233444556666 88889999998877664 888999999999999999999998876653
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.2e-19 Score=168.30 Aligned_cols=325 Identities=12% Similarity=0.054 Sum_probs=169.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|+..|+++..... .+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3455566666666677777777776666654 44566666666666666777777777666665432 255666666666
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCC----CHHhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRP----NLISFNVM------------IKGRLKKGEWEEASRVFDEMLEREVPPTVVTY 219 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 219 (491)
+...|++++|...|+++.+.. | +...+..+ ...+...|++++|.++++.+.+... .+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 666677777777766666542 3 22222222 2344455555555555555544322 244444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKR 299 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (491)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~------- 228 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY------- 228 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH-------
Confidence 555555555555555555555554432 1234444445555555555555555555444432 1111111100
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a 375 (491)
..+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|
T Consensus 229 ----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 229 ----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0000 00011122444556666666666666665532 1122 1233445566666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVT 434 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 434 (491)
...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+ ...+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 66666666642 224556666666666666666666666666654 233 344444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.8e-19 Score=165.00 Aligned_cols=334 Identities=9% Similarity=-0.013 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKG 190 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 190 (491)
...+..+...+...|++++|+..|+++..... .+..++..+..++...|++++|...++++.+.. +-+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34556666667777777777777777665542 256666677777777777777777777766543 2244566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 041882 191 RLKKGEWEEASRVFDEMLEREVP--PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYN 268 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (491)
+...|++++|...|+.+.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 66777777777777766654220 12223322211100 001222345666777777
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
+|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766654 345566666777777777777777777777665433 66677777777777777777777777776
Q ss_pred hCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHcCCCHHHHHH
Q 041882 349 IGGCKPNAATYR------------MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL----ETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 349 ~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~ 412 (491)
+.. +.+...+. .+...+...|++++|...++++.+... .+. ..+..+..++...|++++|..
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 542 22333322 236678899999999999999998642 223 235567889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC
Q 041882 413 VLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
.++++.+.. +.+...|..+...+...|+.+++...+++..+.. |++......+...+...+
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence 999999862 3378899999999999999999999999888765 888888888887766544
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6.1e-17 Score=156.83 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=206.4
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCH
Q 041882 75 SYPSYASLIYKLAR----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTL 146 (491)
Q Consensus 75 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 146 (491)
+..++..+...+.. .++++.|.+.|+...+.+ +...+..|...|.. .+++++|++.|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 566666666666665543 34555556666665 566666666666665543 44
Q ss_pred HHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhh
Q 041882 147 QSFNSLLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 147 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555556666655 556666666666665543 34445555555554 556666666666665543 4555
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHH
Q 041882 219 YNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFG 290 (491)
Q Consensus 219 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (491)
+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|+...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666655 566666666666665543 34455555555554 556666666666655543 233444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 041882 291 VLMSDLGK----RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE-----DRAAEAYKVLTEMQIGGCKPNAATYRM 361 (491)
Q Consensus 291 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (491)
.+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44445554 566666666666665542 444555555555554 56666666666665543 3344444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 362 MVDGFLRVE---DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 362 li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
+...+...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555434 5566666666666643 44555556666655 566666666666666554 3445555555
Q ss_pred HHHh----cCCCcchhHHHHHHhhhhhh-hhhhHHHHHHHHH
Q 041882 435 DACI----GDGNAGGLVEIRDMRDYSMA-ISSVMNVVDLLWT 471 (491)
Q Consensus 435 ~~~~----~~~~~~~~~~~~~m~~~~~~-~~~~~~~~~l~~~ 471 (491)
.+.. .++..++...+++..+.+.. |++......++..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 4444 45555555555555554422 3344444444443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.4e-19 Score=162.57 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=138.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++..... .+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344455555555556666666666666655544 33444455555555566666666666666555432 2445555555
Q ss_pred HHHHhCC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 041882 154 DILVDND-RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM 232 (491)
Q Consensus 154 ~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 232 (491)
..+...| ++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 5666666666655442 123445555555566666666666666655554322 334455555555566666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCChhcHHHHHHHHHhcCChHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG--------CKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
++|...++++.+... .+..++..+...+...|++++|...++...+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 666666665555422 244555555555555555555555555554421 01122344444444444445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
|...++++.+.... +...+..+...+...|++++|.+.+++..
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 54444444443222 33444444444444444444444444443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.2e-19 Score=160.76 Aligned_cols=286 Identities=10% Similarity=-0.018 Sum_probs=183.1
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 355566667777777777777777777776653 224445555666677777777777777777665322 566677777
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 224 GFLCRTG-EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 224 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
..+...| ++++|...|+++.+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777665322 45566667777777777777777777776654 33345555566667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG--------CKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665443 56666777777777777777777777665421 12234566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777766643 2345566666677777777777777777666532 12445555555544
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.5e-16 Score=154.13 Aligned_cols=339 Identities=13% Similarity=0.026 Sum_probs=291.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cC
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLAR----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AH 125 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 125 (491)
.++++.|+..|++..+.| +..++..+...+.. .+++++|.+.|+...+.+ ++..+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999998864 56788889999998 899999999999998875 66778888888888 88
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCh
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEW 197 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~ 197 (491)
++++|+..|++..+.+ +..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999998865 67788889998887 789999999999998864 67788888888888 8999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNE 269 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 269 (491)
++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998875 66788888888886 889999999999998764 45667777777777 899999
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 041882 270 AKKMMFDMAYRGCKPQLVNFGVLMSDLGKR-----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED---RAAEAY 341 (491)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~ 341 (491)
|..+|+...+.+ +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 455667777888877 89999999999998874 5677888888888766 789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHH
Q 041882 342 KVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFV 413 (491)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 413 (491)
+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|..+
T Consensus 352 ~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999999886 467788888888888 899999999999999975 56778888888988 8999999999
Q ss_pred HHHHHHCCC
Q 041882 414 LEEMEKRKM 422 (491)
Q Consensus 414 ~~~~~~~~~ 422 (491)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999998764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=9.7e-19 Score=163.01 Aligned_cols=279 Identities=10% Similarity=-0.034 Sum_probs=156.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|+..|+++...+ +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555543 3445555555555555555555555555554443 124455555555555
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..|++++|...++++...... +...+..+... .. ... ....+.. +..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-----------~~~-~~~~~~~-~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-----------GAG-LGPSKRI-LGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-----------hhc-ccHHHHH-HHHHhhcccHHHHHH
Confidence 555555555555555543211 11111100000 00 000 0000011 222236677777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 238 LFEDMIKKGTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
.++++.+..... +..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777776653221 45666667777777777777777777766653 3345666677777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 317 YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-----------NAATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+. +...+..+..+|.+.|++++|...++++.+.. +. ...+|..+..++...|++++|..++++.
T Consensus 282 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 282 PG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 33 56677777777777777777777777765532 11 1567777777777778777777776543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2e-16 Score=154.83 Aligned_cols=410 Identities=12% Similarity=0.062 Sum_probs=273.4
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-H
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY-G 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 122 (491)
|..++. +.+.|+.++|..+|+++.+.. +.+...|...+..+.+.|+++.|.++|+++.... |+...|...+... .
T Consensus 16 w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 16 WSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 444555 466789999999999988753 6677788888888888899999999999888774 4777777766533 3
Q ss_pred hcCCHHHHHH----HHHHhhh-CCCC-cCHHHHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 041882 123 KAHLVDKAIE----VFNRMTS-FDCV-RTLQSFNSLLDILVD---------NDRVDDAKRMFDDADKMGFRPNLISFNVM 187 (491)
Q Consensus 123 ~~~~~~~a~~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 187 (491)
..|+.+.|.+ +|++... .|.. .+...|...+..... .|+++.|..+|++..+.........|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 4567666654 6666543 2332 356778777776654 67888899999888873111112344333
Q ss_pred HHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCC--------hhhHHHHHHHHHhc----CCh-
Q 041882 188 IKGR-------------LKKGEWEEASRVFDEML------ERE---VPPT--------VVTYNSLIGFLCRT----GEM- 232 (491)
Q Consensus 188 l~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~----~~~- 232 (491)
.... .+.++++.|..++..+. +.. ++|+ ...|...+...... ++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 3211 12345667777666532 221 2333 23455544433222 232
Q ss_pred ---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHh-------HHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 233 ---GKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-------KGEYN-------EAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 233 ---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
..+..+|++.+... +-+...|..+...+.. .|+++ +|..++++..+.-.+.+...+..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 36778888888763 3367778777777765 68876 888888888763224457778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDV-VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG-FLRVEDFE 373 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~ 373 (491)
+.+.|++++|..+|+++.+..+. +. ..|..++..+.+.|++++|.++|++..+.. +.+...+...... +...|+++
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHH
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChh
Confidence 88889999999999998886332 33 578888888888889999999999888642 2233333332222 33578899
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCCcchhHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK-MRFD--LKAWEGLVTDACIGDGNAGGLVEIR 450 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~ 450 (491)
+|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.....
T Consensus 409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888753 2357788888888888999999999999988763 2332 4578887876566676666655555
Q ss_pred HHhhhhhhhhhhH
Q 041882 451 DMRDYSMAISSVM 463 (491)
Q Consensus 451 ~m~~~~~~~~~~~ 463 (491)
++.+.- |++..
T Consensus 488 r~~~~~--p~~~~ 498 (530)
T 2ooe_A 488 RRFTAF--REEYE 498 (530)
T ss_dssp HHHHHT--HHHHT
T ss_pred HHHHHC--chhcc
Confidence 555443 65543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2e-18 Score=160.91 Aligned_cols=266 Identities=11% Similarity=-0.005 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLC 227 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 227 (491)
.+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|+.+.+... .+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 22344445555555555555555555555544432 24445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHH---------------HHHHHHHhcCCHhHHHHHHHHHHHcCCCC-ChhcHHH
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNAVTYA---------------LLMEGLCFKGEYNEAKKMMFDMAYRGCKP-QLVNFGV 291 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 291 (491)
..|++++|...++++...... +...+. ..+..+...|++++|...++.+.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555555543221 111111 12333448899999999999999874221 5778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...++++.+..+. +..+|..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999887544 78899999999999999999999999998764 5567889999999999999
Q ss_pred HHHHHHHHHHHHhCCCC----------CCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 372 FEGSLKVLNAMLTSRHC----------PRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+++|...|+++.+.... ....+|..+..+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999874211 126789999999999999999999887544
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4.3e-16 Score=152.45 Aligned_cols=415 Identities=10% Similarity=0.019 Sum_probs=302.0
Q ss_pred HHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 041882 64 FHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV 143 (491)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 143 (491)
|+..++.. +-+...|..++.. .+.|+++.|..+|+.+.+.. |.+...|..++..+.+.|++++|..+|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444433 5678899999984 78999999999999999875 7788999999999999999999999999998864
Q ss_pred cCHHHHHHHHHHH-HhCCChhhHHH----HHHHHHHC-CCCC-CHHhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 041882 144 RTLQSFNSLLDIL-VDNDRVDDAKR----MFDDADKM-GFRP-NLISFNVMIKGRLK---------KGEWEEASRVFDEM 207 (491)
Q Consensus 144 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 207 (491)
|+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|.++|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888887543 45677777765 77766543 5444 45677777776654 68899999999999
Q ss_pred HhCCCCCChhhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHH
Q 041882 208 LEREVPPTVVTYNSLIGFL-------------CRTGEMGKAKGLFEDMI------KKG---TYPN--------AVTYALL 257 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 257 (491)
.+.........|....... ...+++..|..+++.+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8831111123444332211 13467888888887632 221 2343 2456555
Q ss_pred HHHHHhc----CCH----hHHHHHHHHHHHcCCCCChhcHHHHHHHHHh-------cCChH-------HHHHHHHHHHHc
Q 041882 258 MEGLCFK----GEY----NEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK-------RGKIE-------EAKSLLSEMKKR 315 (491)
Q Consensus 258 l~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 315 (491)
+...... ++. ..+..+|++.+... +.+...|......+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 37788899888763 4567778878777775 68987 999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-A-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET 393 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (491)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+.. +.+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 12236889999999999999999999999999985 454 3 578888888889999999999999999863 223333
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-hhhh-hhHHHHHHHH
Q 041882 394 FSCLLVG-LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-MAIS-SVMNVVDLLW 470 (491)
Q Consensus 394 ~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-~~~~-~~~~~~~l~~ 470 (491)
|...+.. +...|++++|..+|++..+.. .-+...|..++..+...|+.+++...+++..... ..|+ ....+..++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4333322 336899999999999998752 2368899999998888899888988888877653 2343 2335666677
Q ss_pred HhcCCCcchhhhhHhhhh
Q 041882 471 TYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 471 ~~~~~g~~~~~~~~~k~~ 488 (491)
.....|+...+..+.+|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777889988888776654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=161.96 Aligned_cols=268 Identities=10% Similarity=-0.039 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34456667777777777777777777776653 23566677777777777777777777777766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CChhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTY---------PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK-PQLVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 294 (491)
+|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777777777777777777654211 01122333456667777777777777777765311 14566667777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.+...|++++|...|+++.+..+. +..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 777777777777777777665443 56677777777777777777777777776643 3346667777777777777777
Q ss_pred HHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHC-----------PRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 375 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777653100 0245667777777777777766665543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=162.08 Aligned_cols=266 Identities=10% Similarity=-0.053 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
..+..+...+.+.|++++|+..|+++..... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3355556666666666666666666655432 255666666666666666666666666665543 22355666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 041882 192 LKKGEWEEASRVFDEMLEREVP---------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PNAVTYALLMEGL 261 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 261 (491)
...|++++|.+.|+++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666666553211 01223344567777888888888888888776332 1577778888888
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|...+++..+.. +.+..++..+..++...|++++|...|+++.+..+. +..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888887764 445677888888888888888888888888776444 5778888888888888888888
Q ss_pred HHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 342 KVLTEMQIGGC---K--------PNAATYRMMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 342 ~~~~~~~~~~~---~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (491)
..|+++.+..- . .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888765310 0 1256788888888888998888776654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.8e-17 Score=151.51 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=95.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 445566666666666666553 334555666666666666666666666666655333 556666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHcCCCHHH
Q 041882 341 YKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP-----------RLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 409 (491)
...++++.+.. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 77776665542 3345566666666677777777777776666542110 35566666677777777777
Q ss_pred HHHHHHHH
Q 041882 410 ACFVLEEM 417 (491)
Q Consensus 410 a~~~~~~~ 417 (491)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 77666543
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=4.6e-17 Score=148.84 Aligned_cols=229 Identities=10% Similarity=-0.037 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++.... +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444433 2334444444444444455555555444444432 12344444444555555
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVM--------------IK-GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.... +...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 5555555555544443211 11111111 11 134445555555555555543222 4445555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
.+...|++++|...++++.+... .+..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 55555555555555555554321 134444444455555555555555555444432 2233344444444444444444
Q ss_pred HHHHHHHHHH
Q 041882 305 AKSLLSEMKK 314 (491)
Q Consensus 305 a~~~~~~~~~ 314 (491)
|...++++.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.4e-16 Score=149.59 Aligned_cols=380 Identities=9% Similarity=-0.088 Sum_probs=201.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDF--------NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF---- 140 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 140 (491)
......|+.+...+...|++++|++.|+...+. .-+....+|..+..+|...|++++|+..+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334556788888888888888888888776542 11223466777888888888888888887776432
Q ss_pred -C--CCcCHHHHHHHHHHHHh--CCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHH---HHhcCChHHHHHHHHHHHhCC
Q 041882 141 -D--CVRTLQSFNSLLDILVD--NDRVDDAKRMFDDADKMGFRPN-LISFNVMIKG---RLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 141 -~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 211 (491)
+ ......++..+..++.. .+++++|+..|++..+.. |+ ...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 01134555555544444 345777888887777653 33 3333333333 334566677777777776653
Q ss_pred CCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 041882 212 VPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV 287 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (491)
.. +...+..+...+.. .|++++|.+.+++...... .+..++..+...|...|++++|...+++..+.. +.+..
T Consensus 206 p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 PD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp SS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred Cc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 22 45555555544443 3556677777777766533 256667777777777777777777777777653 33344
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
++..+..+|...+.. ..... ...........+.++.|...+++..+.. +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 455554444321100 00000 0000000111123455666666665532 333445566666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 368 RVEDFEGSLKVLNAMLTSRHCPRL--ETFSCLLV-GLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
..|++++|...|++.++....+.. ..+..+.. .+...|++++|+..|++..+. .|+...+...+..+
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l-------- 415 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKL-------- 415 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHH--------
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHH--------
Confidence 777777777777777664322211 11222222 233567777777777776653 34433333222211
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 445 GLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 445 ~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+.+++.. ...|++...+..+|++|..+|++.++..+-++
T Consensus 416 -~~~~~~~l--~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 416 -QKIAKMRL--SKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp -HHHHHHHH--HHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred -HHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11122211 22366777777777777777777766666544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.2e-16 Score=142.86 Aligned_cols=250 Identities=12% Similarity=0.017 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|+++.|+..++++..............+.++|...|+++.|+..++. .-.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34556666666555554432111123444455566666666665554432 12344455555555566666666666
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 202 RVFDEMLEREVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|...++.+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 6666655544322 344445555556666666666666655 234555555666666666666666666666555
Q ss_pred CCCCChhcH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 281 GCKPQLVNF---GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 281 ~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (491)
. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++..+.. +-+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2 332111 1122223334566666666666666533 256666666666666666666666666665543 34555
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 041882 358 TYRMMVDGFLRVEDFEG-SLKVLNAMLTS 385 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~-a~~~~~~~~~~ 385 (491)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66666666666666644 45666666653
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=7.7e-18 Score=153.94 Aligned_cols=283 Identities=12% Similarity=0.107 Sum_probs=119.6
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
.+.|+.++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3567788888888876 22348888888888888888888888542 46667888888888888888888
Q ss_pred HHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
.+++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766553 3456778888888888888888887774 366778888888888888888888888865
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47888888888888888888888887 2678888888888888888888554443 2223333456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI-GGCKP------NAATYRMMVD 364 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~ 364 (491)
++..|.+.|.+++|..+++...... .-....|+.+.-.|++- ++++..+.++.... .+++| +...|..++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887665 33667777777777653 33333333332211 12233 3445677777
Q ss_pred HHHhcCCHHHHHH
Q 041882 365 GFLRVEDFEGSLK 377 (491)
Q Consensus 365 ~~~~~~~~~~a~~ 377 (491)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 7777888887765
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.7e-16 Score=140.60 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=105.7
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
.....|++..|+..++................+.+++...|+++.|...++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3344455555555554433221111112333344455555555555443322 1 13334444444445555555555
Q ss_pred HHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 130 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555544332212 333444444445555555555555443 2234444444444555555555555555544
Q ss_pred hCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 041882 209 EREVPPTVVTY---NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285 (491)
Q Consensus 209 ~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (491)
+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +.+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 432 221100 11112222234444444444444443 22244444444444444444444444444444432 223
Q ss_pred hhcHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 041882 286 LVNFGVLMSDLGKRGKIEE-AKSLLSEMKK 314 (491)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~ 314 (491)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444432 3344444444
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-17 Score=152.45 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=137.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHH
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKR 167 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 167 (491)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678999999998882 2358999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 168 MFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 168 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877664 4567788999999999999999998884 267789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 248 YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNIL 327 (491)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (491)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36889999999999999999999987 36789999999999999999996655542 2355556678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHhHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCP------RLETFSCLLVG 400 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 400 (491)
+..|.+.|++++|..+++...... +-....|+.+..++++- ++++..+.++..... +++| +...|..+.-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988655 55677888887777764 455555555544333 3333 45678899999
Q ss_pred HHcCCCHHHHHHH
Q 041882 401 LLKGGKVDDACFV 413 (491)
Q Consensus 401 ~~~~g~~~~a~~~ 413 (491)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988763
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.4e-15 Score=143.21 Aligned_cols=377 Identities=11% Similarity=-0.026 Sum_probs=215.7
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhC--------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCH
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQM--------GSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-------IRCKE 111 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~ 111 (491)
+...+...|+.++|++.|++..+. ..+....+|..+...+...|++++|...++...+.. .....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 445566789999999999987542 123346689999999999999999999998876531 12235
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH---HHhCCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 041882 112 TLFISLIQHYGKA--HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI---LVDNDRVDDAKRMFDDADKMGFRPNLISFNV 186 (491)
Q Consensus 112 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 186 (491)
.++..+..++... +++++|++.|++..+.++. +...+..+..+ +...++.++|++.+++..+.. +.+...+..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 6777666666554 5799999999999886533 56666666555 345678899999999988764 224555655
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 187 MIKGRLK----KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 187 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
+...+.. .+++++|.+++++...... .+..++..+...|...|++++|...+++..+.... +..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 5555544 4678899999999887653 37788999999999999999999999999987433 5667777766664
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 263 FKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
..+... .... ... ........+..+.|...++...+.++. +...+..+...|...|++++|..
T Consensus 293 ~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 293 AKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHH
Confidence 321110 0000 000 000011112234555555555554332 34445555566666666666666
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 343 VLTEMQIGGCKPNAA--TYRMMVD-GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 343 ~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.|++..+....+... .+..+.. .....|++++|+..|++.++. .|+...... ....+.++++...+
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH
Confidence 666655532211111 1111111 123455666666666666553 233221111 11223333444333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 420 RKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 420 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
.. +.+..+|..+...+...|+.++|++.+++..+.+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 2234455555555555566666666665555443
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.4e-14 Score=147.76 Aligned_cols=378 Identities=12% Similarity=0.101 Sum_probs=276.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGS--KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
.-.++.+...|.+.+|++++++....+. ..+...-+.++....+. +..+..+..+...... ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 3467788899999999999999884321 23455666677776666 6677777666665221 333677888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
..|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998631 3333344433 5688999999988652 46788899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (491)
.|.+. -|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 99664 377888899999999999999999999887764 23333445888899998888654443 1
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM 362 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (491)
.++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345566777889999999999999999985 36889999999999999999999875 456888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG--D 440 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~ 440 (491)
-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 88999999998888876542 3456677788999999999999999998887442 22334454444433333 2
Q ss_pred CCcchhHHHHHHhhhhhhh-----hhhHHHHHHHHHhcCCCcchhhh
Q 041882 441 GNAGGLVEIRDMRDYSMAI-----SSVMNVVDLLWTYLGMGTCVVID 482 (491)
Q Consensus 441 ~~~~~~~~~~~m~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~ 482 (491)
+..+.++.+.. +.+++| +...-+..+...|.+.|.|..|.
T Consensus 1331 klmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33344444432 233333 56667788888888888887654
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=164.89 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADK---MGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNS 221 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (491)
-..+||+||.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------hhcHHHHHH
Q 041882 222 LIGFLCRTGEM-GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ------LVNFGVLMS 294 (491)
Q Consensus 222 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~ 294 (491)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999998874 78889999999999999999999887654443 333333333 2233333 444555666
Q ss_pred HHHhcC
Q 041882 295 DLGKRG 300 (491)
Q Consensus 295 ~~~~~~ 300 (491)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=161.46 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=129.5
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK---RQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 041882 360 RMMVDGFLRVED-FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD------LKAWEGL 432 (491)
Q Consensus 360 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 432 (491)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ +.++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999987 478899999999999999999999988665554 333444444 3345554 3344444
Q ss_pred HHHHHhcCC------CcchhHHHHHHhhhhh
Q 041882 433 VTDACIGDG------NAGGLVEIRDMRDYSM 457 (491)
Q Consensus 433 l~~~~~~~~------~~~~~~~~~~m~~~~~ 457 (491)
.. ++.... ..--+++++.+.+..+
T Consensus 279 ~d-l~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RD-VYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HH-HHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HH-HHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 44 444332 1223455666665544
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.2e-12 Score=133.75 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=229.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (491)
.++.-.....++|...|.+.++.++++.+.-.+. ..+...-+.++.+..+. +..+..++..++... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3444455666677777777777777777763321 13345555566555555 445555555554421 1 233
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 6667777788888888887742 11222233322 667788888777754 156778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888664 267777788888888888888888888776653 33334445778888888777544442
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL 391 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 391 (491)
. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 2 235566667888888888888888888874 36778888888888888888888776 345
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHH
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWT 471 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~ 471 (491)
.+|..+..+|...|++..|...... +..++..+..++..|-+.|.+++++..++... ++++........++..
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHH
Confidence 7788888888888888888776553 23356667788888888888888888886443 4446555555555555
Q ss_pred hcCC
Q 041882 472 YLGM 475 (491)
Q Consensus 472 ~~~~ 475 (491)
|.+-
T Consensus 1324 yaKy 1327 (1630)
T 1xi4_A 1324 YSKF 1327 (1630)
T ss_pred HHhC
Confidence 4443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-14 Score=127.38 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=148.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY--PN----AVTYA 255 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 255 (491)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555566666666666666655554 35556666666666666666666666665543111 11 35566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
.+...+...|++++|...++...... |+. ..+...|++++|...++.+....+. +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 331 3355566777777777777765332 4566777777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
++++|...++++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877653 4456777777888888888888888888887753 2346777778888888888888888888
Q ss_pred HHHHC
Q 041882 416 EMEKR 420 (491)
Q Consensus 416 ~~~~~ 420 (491)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.1e-15 Score=128.57 Aligned_cols=223 Identities=11% Similarity=-0.029 Sum_probs=114.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--C----HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--T----LQSFN 150 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 150 (491)
..+..+...+...|++++|.+.++.+.+.. .+...+..+...+...|++++|+..+++........ + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666555 455666666666666666666666666654432110 1 35555
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
.+..++...|++++|...|+++.+. .|+. ..+...|++++|...++.+..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 5666666666666666666665553 2332 223344455555555555554321 13344445555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++++|...++++.+.... +..++..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543221 34444444455555555555555555444432 2223344444444444444444444444
Q ss_pred HHH
Q 041882 311 EMK 313 (491)
Q Consensus 311 ~~~ 313 (491)
...
T Consensus 232 ~a~ 234 (258)
T 3uq3_A 232 AAR 234 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=8.2e-15 Score=125.15 Aligned_cols=198 Identities=16% Similarity=0.044 Sum_probs=114.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
+...+..+...+.+.|++++|+..|++.++.... +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444555555555555555555555555544222 44455555555555555555555555555443 223444445555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 295 DLGKR-----------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 295 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
++... |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 7777777777777776544 56677777777777788888888887777665 5667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.++...|++++|...|+++++.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777788888888887777753 2356667777777777888888777776654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=9.3e-15 Score=124.82 Aligned_cols=197 Identities=17% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
++...+..+...+.+.|++++|...++...+.. |.+...+..+...+.+.|++++|+..|++..+.++ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455555566666666666666666665554 44555666666666666666666666666555442 2455555555
Q ss_pred HHHHhC-----------CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 154 DILVDN-----------DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 154 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
.++... |++++|+..|++..+... -+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 555555555554444321 123344444444445555555555555544443 244444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
..++...|++++|+..|++..+.... +...+..+...+...|++++|...++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555555554443221 334444444444444554444444443
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=5e-14 Score=134.33 Aligned_cols=349 Identities=11% Similarity=0.019 Sum_probs=238.8
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDF---DAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
..+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|.+.|+...+. ++..+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 446677788999999999999998766 334555666666777777 8999999988754 556666777755
Q ss_pred HhcC-----CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh---hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 122 GKAH-----LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV---DDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 122 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
...+ ++++|+..|++....|. ..++..|...|...+.. .++.+.+......| +......+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78999999999988763 33777788888776553 34555666555544 34556667778888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG---EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK----GE 266 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~ 266 (491)
.+.++.+......+...-...+...+..+...|...| ++++|++.|++..+.|.. +...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 8866555544333332222224558889999999999 999999999999988754 555556677777554 79
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHH
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSD-L--GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-----RAA 338 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 338 (491)
+++|..+|+... . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 344556666665 3 46899999999999999875 7778888888887 55 999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDA 410 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 410 (491)
+|...|++.. +-+......+...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999877 3466677777777766 3499999999999999763 3445566666664 4689999
Q ss_pred HHHHHHHHHCCC
Q 041882 411 CFVLEEMEKRKM 422 (491)
Q Consensus 411 ~~~~~~~~~~~~ 422 (491)
..+|+...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999998874
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.3e-13 Score=127.54 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=177.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL-VDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
...|..+...+...|++++|.+.++.+.+.+ +.+..+|..+...+...|+ +++|+..|++....+.. +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777778888888888888888888876 6677888888888888886 88888888888876633 7788888888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChh
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR-TGEMG 233 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~ 233 (491)
++...|++++|+..|+++++... -+...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888887642 26677888888888888888888888888876544 67788888888888 55546
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC------
Q 041882 234 KA-----KGLFEDMIKKGTYPNAVTYALLMEGLCFKG--EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRG------ 300 (491)
Q Consensus 234 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------ 300 (491)
+| +..|++.+..... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777765333 5667777777777766 567777777666 22 2344556666666666653
Q ss_pred ---ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 041882 301 ---KIEEAKSLLSEM-KKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 301 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 331 (491)
..++|..+|+++ .+.++. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 246677777776 443222 334454444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=3e-14 Score=124.87 Aligned_cols=193 Identities=9% Similarity=-0.000 Sum_probs=95.5
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|+++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHH
Confidence 33444555555555555555432 3344455555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
+|++.|+++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554411112 33444555555555555555555555554432 113444444555555555555555555554
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 202 AQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44322 23444444445555555555555555555443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.3e-13 Score=122.19 Aligned_cols=233 Identities=11% Similarity=0.001 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP--NAVTYALLMEGL 261 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 261 (491)
+......+...|++++|+..|+.+.+.... +...+..+..++...|++++|+..++++.+.+..+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455556666666666666666554322 44456666666666666666666666665532111 123355666666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666553 334456666666677777777777777666665333 5556666662333344777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHcCCCHHHHH
Q 041882 342 KVLTEMQIGGCKPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSR-HCPR------LETFSCLLVGLLKGGKVDDAC 411 (491)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 411 (491)
+.++++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776643 3335566666666666666 666777777666531 1122 245666777777778888888
Q ss_pred HHHHHHHHC
Q 041882 412 FVLEEMEKR 420 (491)
Q Consensus 412 ~~~~~~~~~ 420 (491)
..++++.+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888777764
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.1e-13 Score=122.73 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHH
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILV 157 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~ 157 (491)
......+...|+++.|.+.++.+.+.. +.+...+..+...+...|++++|+..+++.......+ ...+|..+..++.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 333444444455555555555444433 2233344444444445555555555554444421000 1122444444444
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444432 1123344444444444445555544444444431 1133333333312222334444444
Q ss_pred HHHHHHHc
Q 041882 238 LFEDMIKK 245 (491)
Q Consensus 238 ~~~~~~~~ 245 (491)
.|+++.+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.8e-14 Score=124.23 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=145.9
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
..+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344556667788899999999999988754 5567788888888899999999999999888775 55778888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++++|++.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999998887765 2367788888888888888888888888887653 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+.++.+.+... .+..++..+..+|...|++++|...++++.+..
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888777543 356777888888888888888888888887753
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.6e-13 Score=126.85 Aligned_cols=230 Identities=7% Similarity=0.028 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
..++..+...+...|++++|+..++++...+.. +..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 466777888888889999999999998877633 77888889999999996 99999999998886422 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHh
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-KGEYN 268 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~ 268 (491)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888889999999999988887544 7788888888888899999999999998887544 67788888888887 55546
Q ss_pred HH-----HHHHHHHHHcCCCCChhcHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 041882 269 EA-----KKMMFDMAYRGCKPQLVNFGVLMSDLGKRG--KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED------ 335 (491)
Q Consensus 269 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------ 335 (491)
+| +..++..+... +-+...|..+..++...| ++++|.+.+.++ +... .+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 66 46677666653 334556666666666666 567777777766 3322 25666777777776653
Q ss_pred ---CHHHHHHHHHHH
Q 041882 336 ---RAAEAYKVLTEM 347 (491)
Q Consensus 336 ---~~~~a~~~~~~~ 347 (491)
..++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 246777777776
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.6e-12 Score=115.41 Aligned_cols=220 Identities=10% Similarity=-0.039 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLM 258 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (491)
++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3333444444444444444444444442 123344444444444 444444444444444432 334444444
Q ss_pred HHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 259 EGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK----RGKIEEAKSLLSEMKKRQYKPDVVTYNILINY 330 (491)
Q Consensus 259 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 330 (491)
..|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 444444444444444432 33344444444444 455555555555555432 33444445555
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 331 LCK----EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 331 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 554 555555555555555432 33444455555555 556666666666555543 1444455555555
Q ss_pred c----CCCHHHHHHHHHHHHHC
Q 041882 403 K----GGKVDDACFVLEEMEKR 420 (491)
Q Consensus 403 ~----~g~~~~a~~~~~~~~~~ 420 (491)
. .|++++|...|++..+.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 5 56666666666665554
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.6e-12 Score=115.27 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=102.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (491)
..++..+...+...|++++|.+.|+...+. .+...+..+...+.. .+++++|+..|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444455555555555555555555442 233444445555555 555555555555554432 4444555
Q ss_pred HHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 152 LLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 152 ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555554432 34444444444444 455555555555544433 333444444
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 224 GFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 224 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 44444 445555555554444432 23334444444444 444444444444444432 12233333334
Q ss_pred HHh----cCChHHHHHHHHHHHH
Q 041882 296 LGK----RGKIEEAKSLLSEMKK 314 (491)
Q Consensus 296 ~~~----~~~~~~a~~~~~~~~~ 314 (491)
|.. .+++++|...|++..+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHH
Confidence 443 4444444444444443
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.9e-13 Score=130.35 Aligned_cols=347 Identities=11% Similarity=-0.013 Sum_probs=229.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV---DKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+...+.+.|++++|.++|+...+.+ +...+..+...|...|+. ++|+..|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 334455666667777888 8999999998863 6667777877666
Q ss_pred hCC-----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 158 DND-----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE---EASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 158 ~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
..+ ++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 78899999999998763 236667777777665543 4555555555544 456777888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc----CCh
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG---EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKR----GKI 302 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~ 302 (491)
+.++++......+.+.-...++..+..+...|...| +.++|...|+...+.| .++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 866655554333333212223337788888888999 9999999999999887 55555556677777554 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINY-L--CKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE-----DFEG 374 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 374 (491)
++|...|+... . -+...+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999988 3 256667777776 4 46899999999999999866 6677777777776 55 9999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCCcchh
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG----DGNAGGL 446 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~ 446 (491)
|...|++.. . -+...+..+...|.. ..++++|..+|++..+.|. ......|...|... .+...+.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999988 4 356777777777766 4499999999999998763 33444454444432 2344455
Q ss_pred HHHHHHhhhh
Q 041882 447 VEIRDMRDYS 456 (491)
Q Consensus 447 ~~~~~m~~~~ 456 (491)
..+....+.|
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 5555444444
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=3.3e-13 Score=118.18 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|++.|+++..... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 456777778888999999999999988875 55778888888899999999999999988877642 3677888888888
Q ss_pred HhCCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
...|++++|...++++...+..| +...+..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887732334 455677777788888888888888888777543 2567777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
...++.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888776533 35666777777777888888888888877765
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=4.9e-13 Score=114.70 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555666666666666666655544 3345555556666666666666666666655443 1244555555555
Q ss_pred HHhC-CChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 156 LVDN-DRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 156 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 666666666655554211222 344455555555555555555555555543221 3445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555442212444444444445555555555555555443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.3e-14 Score=126.36 Aligned_cols=250 Identities=11% Similarity=-0.056 Sum_probs=176.5
Q ss_pred HhhhcCChHHHHHHHHHhhhCCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGS---KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
.+...|++++|+..|+.+.+... +.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 34556899999999999887532 1245678888888999999999999999988876 5678889999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
+++|+..|++...... .+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999887653 36778888899999999999999999988875 35544455555566777888888888877
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP---NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
..... +++...+ .++..+...++.++|...++......... +..++..+...+...|++++|...++......
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 76653 2243344 36666777777888888888776542110 13556666777777777777777777776553
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
|+. +.....++...|++++|.+.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 122233445555566655544
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.3e-14 Score=125.00 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
+..+..++...|++++|...|+++.+.... +..+|..+...+...|++++|...|+++.+.... +..++..+..++..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHH
Confidence 334444444444444444444444433211 3344444444444444444444444444443211 23344444444444
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 264 KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKV 343 (491)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 343 (491)
.|++++|...++.+.+.. |+.......+..+...|++++|...++........ +...+. ++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHH
Confidence 444444444444444431 22222222222333445555555555444443221 222222 33344444555555555
Q ss_pred HHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 344 LTEMQIGGCK---PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 344 ~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
+++....... .+..++..+...+...|++++|...|+++.+.. |+. +.....++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5554432100 012445555555556666666666666665532 211 122233444555555555443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=7e-13 Score=113.74 Aligned_cols=200 Identities=9% Similarity=-0.041 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344444444444555555555544444321 134444444444455555555555555444432 22334444445555
Q ss_pred Hhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 297 GKR-GKIEEAKSLLSEMKKRQYKP-DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 297 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
... |++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 55555555555554411111 23445555555555566666665555555432 2334555555555566666666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666555532112344455555555566666666666665554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.4e-13 Score=119.78 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333333344444444443333321 1123333334444444444444444444443
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=2.5e-10 Score=112.64 Aligned_cols=393 Identities=9% Similarity=-0.004 Sum_probs=197.4
Q ss_pred hHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 041882 57 PDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL---VDKAIEV 133 (491)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 133 (491)
..+.+..|++.+..+ +-|...|..++..+.+.++++.+..+|+.+...- |.....|...+..-.+.+. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344444555555444 4567777777777777777777777777777653 5566667766666666666 7777777
Q ss_pred HHHhhhCC-CCcCHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHC-CC-CCC-HHhHHHHHHHHHh--------
Q 041882 134 FNRMTSFD-CVRTLQSFNSLLDILVDNDRV--------DDAKRMFDDADKM-GF-RPN-LISFNVMIKGRLK-------- 193 (491)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~p~-~~~~~~ll~~~~~-------- 193 (491)
|++..... ..|++..|...+....+.++. +.+.++|+..... |. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77766543 125666676666655444432 2233555554432 44 343 3455555544321
Q ss_pred -cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------------cCChhH-------------------------
Q 041882 194 -KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR-------------TGEMGK------------------------- 234 (491)
Q Consensus 194 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~------------------------- 234 (491)
.++++.+.++|++++......-..+|......-.. ..+++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23355566666666542111111122111100000 001112
Q ss_pred ------------------------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH-
Q 041882 235 ------------------------------------------AKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK- 271 (491)
Q Consensus 235 ------------------------------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 271 (491)
+..+|++++.. .+-+...|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 22333333332 1123344444444444555555664
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY---------KPD------------VVTYNILINY 330 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~ 330 (491)
.+|+..... ++.+...+-..+....+.|+++.|..+|+.+..... .|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 666666543 233333444555555666666666666666654310 121 2245555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHH
Q 041882 331 LCKEDRAAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLRV-EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (491)
..+.|+.+.|..+|.+..+. + ......|...+..-.+. ++.+.|..+|+..++. ++.+...+..++......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 55566666666666666553 1 11223333222222222 3366666666666664 2234455556666666666666
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCCcchhHHHHHHhhh
Q 041882 409 DACFVLEEMEKRKMRF--DLKAWEGLVTDACIGDGNAGGLVEIRDMRDY 455 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~ 455 (491)
.|..+|++.......+ ....|..++.-=...|+.+.+.+..+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666542211 2345666665444455554444444544443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.9e-13 Score=128.73 Aligned_cols=300 Identities=13% Similarity=0.008 Sum_probs=194.6
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-C
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN----LISFNVMIKGRLKKGEWEEASRVFDEMLER----EVP-P 214 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 214 (491)
.....+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667777888888899999999999988876321 2 246777788888889999999988886543 111 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HhH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGE--------------------YNE 269 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~ 269 (491)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888888889999999888888765111 12 3366777777888888 888
Q ss_pred HHHHHHHHHHc----CCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 041882 270 AKKMMFDMAYR----GCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 270 a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 339 (491)
|...+...... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88877766542 111 11335666777777788888888888776653111 12 2266677777777888888
Q ss_pred HHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHcCCCHHH
Q 041882 340 AYKVLTEMQIGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHCP-RLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 340 a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 409 (491)
|...+++..+... ..+ ..++..+...+...|++++|...++++.+. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888777654310 111 345666677777778888888877777653 1111 14466667777777888888
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCCcc
Q 041882 410 ACFVLEEMEKR----KMRF-DLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 410 a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~ 444 (491)
|...+++..+. +..+ ...++..+...+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 88777776532 1111 13344455555555555433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.2e-13 Score=128.38 Aligned_cols=302 Identities=12% Similarity=0.006 Sum_probs=156.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-c
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSF----DCV-R 144 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 144 (491)
.....+......+...|++++|...++.+.+.. +.+ ..++..+...+...|++++|+..+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555666677777777777777777777664 223 245666777777777777777777765332 111 1
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------hHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGE--------------------WEE 199 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~ 199 (491)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244566677777777777777777776654310 011 2345555666666666 666
Q ss_pred HHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 041882 200 ASRVFDEMLER----EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-YPNAVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 200 a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 66655554331 10 01123445555555555555555555555543200 00100
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00113334444444444444444444444321000 01 3345555556666666666666665554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHcCCCH
Q 041882 349 IGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PRLETFSCLLVGLLKGGKV 407 (491)
Q Consensus 349 ~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 407 (491)
+... ..+ ..++..+...+...|++++|...+++..+. +.. ....++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3210 011 334555566666666666666666665542 111 1234555566666666554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=5.6e-13 Score=125.95 Aligned_cols=274 Identities=14% Similarity=0.024 Sum_probs=148.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCcCHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKE----TLFISLIQHYGKAHLVDKAIEVFNRMTSF----D-CVRTLQSF 149 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 149 (491)
+..+...+...|++++|.+.++.+.+.. +.+. .++..+...+...|++++|+..+++.... + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4445666777888888888888877764 3333 46777777778888888888887776442 1 11234567
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKM----GF-RPNLISFNVMIKGRLKKGE-----------------WEEASRVFDEM 207 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 207 (491)
..+...+...|++++|...+++..+. +- .....++..+...+...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777777788888888777776543 10 1123355566666777777 66666666554
Q ss_pred HhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 208 LER----EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 208 ~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
.+. +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 10 111234555566666666666666666665442100 01 123444444555555555555555444
Q ss_pred HHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 278 AYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GC 352 (491)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 352 (491)
..... ..+. .....++..+...|...|++++|...+++..+. +.
T Consensus 290 l~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 290 LALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 33210 0000 001234444555555555555555555554332 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 353 -KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 353 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.....++..+...+...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00122444555556666666666666666555
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.8e-13 Score=128.04 Aligned_cols=276 Identities=12% Similarity=-0.001 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHh
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKM----GF-RPNLIS 183 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~ 183 (491)
.+..+...+...|++++|+..|++....+.. +. .+|..+..++...|++++|...+++..+. +. ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677778888888888877665422 32 46677777777778888887777766543 11 112345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLERE-----VPPTVVTYNSLIGFLCRTGE-----------------MGKAKGLFED 241 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 241 (491)
+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666667777777777766654421 11123345555555556666 4444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 041882 242 MIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC-KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-P 319 (491)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 319 (491)
..+. .. ..+. ......+..+...+...|++++|...+++..+.... .
T Consensus 209 al~~----------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 209 NLKL----------------------------MR---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----------------------------HH---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 3321 00 0000 011234555556666666666666666655442110 0
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 041882 320 D----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGC----K-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS----R 386 (491)
Q Consensus 320 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ 386 (491)
+ ..++..+...|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23677788888899999999998888765310 0 11457778888999999999999999988764 1
Q ss_pred CC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 387 HC-PRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 387 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.. ....++..+..+|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 12557888999999999999999999999875
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=2.1e-10 Score=113.21 Aligned_cols=392 Identities=10% Similarity=0.038 Sum_probs=264.7
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCCHHHHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD---FDAVETVLGYIQDFN-IRCKETLFISLI 118 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 118 (491)
.|..++..+...+..+.+..+|+++... .+.+...|..-+..-.+.++ ++.+.++|++..... .+|+...|...+
T Consensus 68 ~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 68 LYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4567888888889999999999999975 46677788888888888888 999999999998865 247888888888
Q ss_pred HHHHhcCCH--------HHHHHHHHHhhh-CCC-Cc-CHHHHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCC
Q 041882 119 QHYGKAHLV--------DKAIEVFNRMTS-FDC-VR-TLQSFNSLLDILVD---------NDRVDDAKRMFDDADKMGFR 178 (491)
Q Consensus 119 ~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~ 178 (491)
....+.++. +...++|+.... .|. .+ +...|...+..... .++.+.+..+|+..+.....
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~ 226 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMD 226 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccH
Confidence 776665543 334467776543 344 33 45788888766542 33466777788777753211
Q ss_pred CCHHhHHHHHHHHHh-------------cCChHH----------------------------------------------
Q 041882 179 PNLISFNVMIKGRLK-------------KGEWEE---------------------------------------------- 199 (491)
Q Consensus 179 p~~~~~~~ll~~~~~-------------~~~~~~---------------------------------------------- 199 (491)
.-..+|......-.. ..+++.
T Consensus 227 ~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~ 306 (679)
T 4e6h_A 227 CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL 306 (679)
T ss_dssp SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHH
Confidence 111222111110000 001111
Q ss_pred ---------------------HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHH
Q 041882 200 ---------------------ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK-GLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 200 ---------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 257 (491)
+..+|++++.. .+-+...|...+..+...|+.++|. .+|++.... .+.+...+...
T Consensus 307 ~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~ 384 (679)
T 4e6h_A 307 EWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSL 384 (679)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 12233333332 1224445555566666778888996 999999875 44466677778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcC---------CCCC------------hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRG---------CKPQ------------LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
+......|+++.|..+|+.+.... ..|+ ..+|...+....+.|+.+.|..+|..+.+.-
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888889999999999999988641 0132 2357777787788899999999999998761
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHh
Q 041882 317 YKPDVVTYNILINYLCKE-DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP--RLET 393 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 393 (491)
.......|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.+.....+ ....
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~l 543 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMI 543 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 112334444333333344 4589999999999876 34566667788888888999999999999999874321 3567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041882 394 FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
|..++..-.+.|+.+.+..+.+++.+. .|+......+.. -++.++
T Consensus 544 w~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~-ry~~~~ 588 (679)
T 4e6h_A 544 FQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN-KYKVLD 588 (679)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH-HTCBTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH-HhcCCc
Confidence 888888888999999999999999986 345444444444 344444
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=4.7e-12 Score=118.36 Aligned_cols=230 Identities=9% Similarity=-0.041 Sum_probs=153.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CC----CCHHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER----EVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG--TY----PNAVTYA 255 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 255 (491)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.- .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566778888888888877653 1111 23567777788888888888888888776531 11 1134667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCK-PQ----LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR----QY-KPDVVTYN 325 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 325 (491)
.+..+|...|++++|...+++..+.... .+ ..++..+..+|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776653100 11 235677778888888888888888877662 22 22456777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHhHHHH
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIG----GCKPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCP-RLETFSCL 397 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 397 (491)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888877543 111112234556667777777 66666666654 2222 34466778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 041882 398 LVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.2e-12 Score=119.68 Aligned_cols=275 Identities=12% Similarity=0.032 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCcCHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSF----D-CVRTLQSF 149 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 149 (491)
+......+...|++++|...++.+.+.. +.+ ..++..+...+...|++++|++.+++.... + .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556666777777777777766654 223 245666666777777777777776665332 1 01124456
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGE--------------------WEEASRVF 204 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 204 (491)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666666777777777776666544210 011 2245555556666666 55555555
Q ss_pred HHHHhC----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 205 DEMLER----E-VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 205 ~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
++.... + .......+..+...+...|++++|...+++..+... .++.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 554321 0 001122444455555555555555555555443200 0000
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQIG--- 350 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 350 (491)
.....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000123344444445555555555555444322100 01 334555566666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 351 -GCK-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 351 -~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.. ....++..+...+...|++++|...++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 100 11234555666666777777777777766653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=9.5e-12 Score=103.07 Aligned_cols=165 Identities=12% Similarity=-0.015 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
+.+|..+...|...|++++|++.|++.++.... +..++..+..+|...|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 334444444444444444444444444443222 33444444444444444444444444444332 2223333333344
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+...++++.+...+.......+. +...+..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44444444444444444443222 33444444444444444444444444444332 22333444444444444444444
Q ss_pred HHHHHHHHh
Q 041882 376 LKVLNAMLT 384 (491)
Q Consensus 376 ~~~~~~~~~ 384 (491)
...|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.1e-12 Score=119.93 Aligned_cols=278 Identities=12% Similarity=0.005 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC----HHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHhH
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT----LQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRP-NLISF 184 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~ 184 (491)
+......+...|++++|+..|+++...... + ...+..+...+...|++++|...+++.... +..| ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777776654322 2 345666666777777777777776665432 1111 13344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC-------------hhHHHHHHHHHHHcC
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVP-PT----VVTYNSLIGFLCRTGE-------------MGKAKGLFEDMIKKG 246 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~-------------~~~a~~~~~~~~~~~ 246 (491)
..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 55555666666666666666554432100 01 2244445555555555 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 041882 247 TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GC-KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY---- 317 (491)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 317 (491)
+++|...+++.... +. ......+..+...+...|++++|...+++..+...
T Consensus 159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444443333221 10 11123455666677777777777777776654311
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 318 -KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RH 387 (491)
Q Consensus 318 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 387 (491)
.....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...++++.+. +.
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 01133778888999999999999999998765310 111 456778888999999999999999988764 11
Q ss_pred C-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 388 C-PRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 388 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
. ....++..+...|.+.|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 12447788999999999999999999999865
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=2.3e-11 Score=109.86 Aligned_cols=218 Identities=11% Similarity=0.111 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLAR-------ARDF-------DAVETVLGYIQD-FNIRCKETLFISLIQHYG 122 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 122 (491)
++|+.+|+++.... +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67778888877643 5667777777766653 4665 677777777776 33 445566777777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHH-HHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCChHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQ-SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL-KKGEWEEA 200 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a 200 (491)
+.|++++|..+|++..+.... +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777664311 232 666666666666777777777776665431 22333332222211 24666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYP--NAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
.++|+...+... -+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655422 245566666666666666666666666666542 232 2445555555555666666666666665
Q ss_pred HHc
Q 041882 278 AYR 280 (491)
Q Consensus 278 ~~~ 280 (491)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=6.3e-11 Score=106.96 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hh-cHHHHHHHHHhcCChHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LV-NFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++|..+|++.++.-.+-+...|..++..+...|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211113445555555555555555555555555543 232 22 45555566666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 041882 311 EMKKRQYKPDVVTYNILINYLC-KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HC 388 (491)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~ 388 (491)
+..+.... +...|...+.... ..|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++++... ++
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 66654332 3333433322221 2577777777777776542 3456667777777777788888888888877752 34
Q ss_pred C--CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 389 P--RLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 389 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3557777777777788888888888887764
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.1e-11 Score=102.63 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=94.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...|..+...+...|++++|.+.|+...+.. |.+..++..+...+.+.|++++|+..++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34556666666666666666666666666554 44555566666666666666666666666554432 24455555555
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK 234 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 234 (491)
.+...++++.+...+.+..... +-+...+..+..++.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 5556666666666665555442 223445555555555666666666666655554322 45555555556666666666
Q ss_pred HHHHHHHHHHc
Q 041882 235 AKGLFEDMIKK 245 (491)
Q Consensus 235 a~~~~~~~~~~ 245 (491)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666555543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.9e-12 Score=122.94 Aligned_cols=216 Identities=9% Similarity=-0.029 Sum_probs=169.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV-DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMF 169 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 169 (491)
.++.+.+.++...... +.+...+..+...+...|++ ++|++.|++..+.+. .+..+|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567777777766554 45778888888888888888 888888888877653 36788888888888888888888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCh
Q 041882 170 DDADKMGFRPNLISFNVMIKGRLKK---------GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT--------GEM 232 (491)
Q Consensus 170 ~~~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~ 232 (491)
++..+. .|+...+..+..++... |++++|++.|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 46677788888888888 8888888888888876433 677888888888888 888
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTY--PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876321 377788888888888888888888888888764 4455667777888888888888887665
Q ss_pred HH
Q 041882 311 EM 312 (491)
Q Consensus 311 ~~ 312 (491)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.2e-11 Score=115.63 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=188.2
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHH--HHHHHHHH--HHhcCCHHHHH-----------HHHHHhhhCCCCcCHHH
Q 041882 86 LARARDFDAVETVLGYIQDFN--IRCKET--LFISLIQH--YGKAHLVDKAI-----------EVFNRMTSFDCVRTLQS 148 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 148 (491)
+.+.+++++|..+++.+.+.- +..+.. .|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 445677777777777765431 222332 22333222 11223333333 5555554321 11111
Q ss_pred ------HHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---
Q 041882 149 ------FNSLLDILVDNDRVDDAKRMFDDADKM----GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLERE--V--- 212 (491)
Q Consensus 149 ------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--- 212 (491)
+......+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556677788888888888887654 1111 23567777788888888888888888776531 1
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GC 282 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 282 (491)
.....+++.+...|...|++++|...+++..+.... .+ ..++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112346777888888889999998888887753110 11 246777888888899999999888887762 22
Q ss_pred -CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 041882 283 -KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ----YKPDVVTYNILINYLCKEDR---AAEAYKVLTEMQIGGCKP 354 (491)
Q Consensus 283 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~ 354 (491)
+....++..+..++.+.|++++|...+++..+.. -......+..+...|...|+ +++|+.++++. +..+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 3335567788888889999999999888776531 11122335667777778888 67777777665 2233
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 355 N-AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 355 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+ ...+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 34666788889999999999999998876
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.8e-12 Score=122.10 Aligned_cols=214 Identities=12% Similarity=-0.033 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 197 WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM-GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
++++.+.++...... +.+...+..+..++...|++ ++|++.|++..+.... +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444332 22555566666666666666 6666666666554322 45566666666666666666666666
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKR---------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE--------DRAA 338 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~ 338 (491)
...+. .|+...+..+..++... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 34455555666666666 7777777777777766544 667777777777777 7788
Q ss_pred HHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCK---PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
+|+..|++..+.. + -+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877642 2 367777788888888888888888888887753 2345667777777888888887776554
Q ss_pred HH
Q 041882 416 EM 417 (491)
Q Consensus 416 ~~ 417 (491)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=118.05 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CC
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDF-------NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-------DC 142 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 142 (491)
.++..+...+...|++++|..+++.+.+. ..+....++..+...+...|++++|+..+++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555666666666666555542 11233445555666666666666666666655432 11
Q ss_pred CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 041882 143 VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER----- 210 (491)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 210 (491)
+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223445666666666666666666666665543 1111 2334555666666666666666666665543
Q ss_pred -C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 211 -E-VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 211 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+ .+....++..+..+|...|++++|...++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 111234556666666667777777777666654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=118.45 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------C
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSF-------DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------G 176 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 176 (491)
...++..+...+...|++++|+.+|+++... ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888889999999999999888663 22335667888888888899999999888887654 1
Q ss_pred C-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 041882 177 F-RPNLISFNVMIKGRLKKGEWEEASRVFDEMLER------EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--- 245 (491)
Q Consensus 177 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 245 (491)
- ......+..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456777778888888888888888887653 11 223456777778888888888888888887654
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 246 ---GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 246 ---~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+..| ...++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234566777777788888888888777765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=9.1e-11 Score=109.35 Aligned_cols=228 Identities=8% Similarity=-0.054 Sum_probs=148.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C---CC-CHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREV-PP----TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG--T---YP-NAVTYAL 256 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~ 256 (491)
...+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888887765311 11 24466777778888888888888887776531 1 11 2345667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc----CCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYR----GCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK-----RQYKPDVVTYNI 326 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 326 (491)
+..+|...|++++|...+.+..+. +.. ....++..+..+|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777788888888888888776653 111 1123566677778888888888888887766 3333 3667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHhHHHHH
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGC---KPN-AATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCP-RLETFSCLL 398 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 398 (491)
+...|.+.|++++|...+++..+... .+. ...+..+...+...++ +++|..++++ .+..+ ....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 78888888888888888887765311 122 2344444455556666 6666666655 22222 234556777
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 041882 399 VGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=4.6e-10 Score=104.35 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC----Chhc
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKK----GTY--P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP----QLVN 288 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 288 (491)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34444455555555555555554432 111 1 12233444445555555555555555544332110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP-D-VVTYN----ILINYLCKEDRAAEAYKVLTEMQIGGCKP---NAATY 359 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 359 (491)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 4445555556666666666666554321111 1 11111 12233456666666666666654322111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTS----RHCPRL-ETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..+...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555666667777776666665442 111111 2445556666677777777777766653
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=3.4e-10 Score=105.24 Aligned_cols=264 Identities=11% Similarity=0.026 Sum_probs=133.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGR 191 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~ 191 (491)
+...|++++|...+++........+. .+++.+...+...|++++|...+++...... ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34445555555555544332211111 1233444444555555555555554433200 001 11233444455
Q ss_pred HhcCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Q 041882 192 LKKGEWEEASRVFDEMLER----EVP--P-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY----PNAVTYALLMEG 260 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~ 260 (491)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5556666666655554432 111 1 1233444555566666666666666665543211 112345555566
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCh-hcHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQL-VNFG-----VLMSDLGKRGKIEEAKSLLSEMKKRQYKP---DVVTYNILINYL 331 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 331 (491)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 66666666666666665543111111 1111 12233556777777777776665432211 122455666777
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 332 CKEDRAAEAYKVLTEMQIG----GCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888888877776432 211122 2455556677788888888888887765
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=5.9e-10 Score=103.82 Aligned_cols=231 Identities=12% Similarity=-0.047 Sum_probs=160.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---C-CChhhH
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGEWEEASRVFDEMLERE--V---P-PTVVTY 219 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 219 (491)
.....+...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556678888888888888765411 122 3466777788888888888888888776531 1 1 124567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCChhcHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKK----GTY-PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GCKPQLVNFG 290 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 290 (491)
+.+..+|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888888899999999888887653 111 12346777888888899999999988887761 2123356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 041882 291 VLMSDLGKRGKIEEAKSLLSEMKKRQYK---P-DVVTYNILINYLCKEDR---AAEAYKVLTEMQIGGCKPN-AATYRMM 362 (491)
Q Consensus 291 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 362 (491)
.+..++.+.|++++|...+++..+.... + ....+..+...|...++ +.+|+..+++. +..++ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 7888888999999999999888764211 1 23345556666667777 67777777652 22222 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999988765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.7e-10 Score=95.26 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.+..+...+...|++++|+..++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555544331 244555555555555555555555555555432 223445555555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 041882 193 KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (491)
..|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665555422 2455555566666666666666666666555432 245555566666666666666666
Q ss_pred HHHHHHHc
Q 041882 273 MMFDMAYR 280 (491)
Q Consensus 273 ~~~~~~~~ 280 (491)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66655543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=2.5e-10 Score=94.21 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 33333334444444444444444433321 2233333334444444444444444444444331 122334444444444
Q ss_pred cCCCHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEME 418 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~ 418 (491)
..|++++|...++++.
T Consensus 156 ~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 156 QMGRHEEALPHFKKAN 171 (186)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=7.7e-11 Score=117.69 Aligned_cols=167 Identities=9% Similarity=0.044 Sum_probs=143.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+..+|+.+...+.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|+..|++..+.+.. +..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 346788999999999999999999999998876 667888999999999999999999999998876533 688999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.++...|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988764 225678888999999999999999999998887543 6788899999999999999
Q ss_pred HHHHHHHHHHH
Q 041882 234 KAKGLFEDMIK 244 (491)
Q Consensus 234 ~a~~~~~~~~~ 244 (491)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.1e-10 Score=114.63 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
...|+.+..+|.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|+..|++.++.. +-+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555555566666666666666655554222 34555555555666666666666666555543 2334555556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+...|++++|++.|++..+.+.. +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666555443 55566666666666666666666666665542 33445566666666666666666
Q ss_pred HHHHHHHHh
Q 041882 376 LKVLNAMLT 384 (491)
Q Consensus 376 ~~~~~~~~~ 384 (491)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.2e-09 Score=93.87 Aligned_cols=192 Identities=10% Similarity=-0.079 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 34444444444444444444444444443322344444444444444555555555554444432 22233444444445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKPDV-------VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN---AATYRMMVDGF 366 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 366 (491)
...|++++|...+++..+..+. +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 5555555555555554443322 22 23445555555566666666666665543 333 23444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
... +..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 332 223333333322 11222222222 22334566666666666654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.1e-09 Score=93.90 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
++..+......+...|++++|+..|++.......++...+..+..++...|++++|+..|++..+... -+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 45566666666666667777776666666554324555555566666666666666666666665431 13445556666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
++...|++++|.+.+++..+.... +. ..|..+...+...|++++|+..|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 666666666666666666554322 33 33555555555566666666666655543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.9e-10 Score=102.11 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------C-
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER------E- 211 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 211 (491)
..++..+..++...|++++|+..++++.+. +-.| ...++..+..++...|++++|.+.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555555555555555554432 1111 2334455555555556666665555555432 0
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK------GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
.+....++..+...|...|++++|...++++.+. +..| ...++..+...+...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122445555666666666666666666665543 1111 234555566666666666666666666554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.5e-10 Score=102.86 Aligned_cols=225 Identities=12% Similarity=0.094 Sum_probs=156.5
Q ss_pred CChHHHHHHHHHhhh-------CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCCHHHHHHHHHH
Q 041882 55 RDPDEALSLFHRHHQ-------MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDF------N-IRCKETLFISLIQH 120 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 120 (491)
|+++.|+..|++..+ ...+....++..+...+...|++++|.+.++.+.+. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 555555555554443 233445667889999999999999999999988764 2 13345678899999
Q ss_pred HHhcCCHHHHHHHHHHhhhC------C-CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSF------D-CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNV 186 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ 186 (491)
+...|++++|+..|++.... . .+....++..+..++...|++++|...+++..+. +..| ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998654 1 1234678899999999999999999999998765 1122 3467788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-------CCCC-ChhhHHHHHHHHHhcCChhHHH------HHHHHHHHcCCCCCHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER-------EVPP-TVVTYNSLIGFLCRTGEMGKAK------GLFEDMIKKGTYPNAV 252 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~~~~~~~~~ 252 (491)
+..++...|++++|...++++.+. ...+ ....|..+...+...+....+. ..++.... ..+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 899999999999999999988763 1222 2333444444444333332222 22222111 1122355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++..+...|...|++++|..++++..+.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999987753
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=3.1e-09 Score=94.91 Aligned_cols=192 Identities=10% Similarity=-0.011 Sum_probs=99.1
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CC--ChhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KP--QLVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~ 294 (491)
.|...|++++|...|++..+. |..++ ..+|+.+..+|...|++++|...+++..+... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666555555432 11111 23455555555566666666555555443210 00 0224555556
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 041882 295 DLGKR-GKIEEAKSLLSEMKKRQYKP-D----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA------ATYRMM 362 (491)
Q Consensus 295 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 362 (491)
+|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++..+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 67777776666665431110 1 234666666777777777777777776654211111 144555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--cCCCHHHHHHHHHHHH
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCPRL------ETFSCLLVGLL--KGGKVDDACFVLEEME 418 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 418 (491)
..++...|++++|...|++.++. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 56666677777777777766653 1221 12333444443 3455666666665554
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.8e-08 Score=88.33 Aligned_cols=11 Identities=9% Similarity=-0.133 Sum_probs=5.2
Q ss_pred hhcCChHHHHH
Q 041882 52 KEIRDPDEALS 62 (491)
Q Consensus 52 ~~~~~~~~A~~ 62 (491)
--.|++..++.
T Consensus 24 fy~G~yq~~i~ 34 (310)
T 3mv2_B 24 YYTGNFVQCLQ 34 (310)
T ss_dssp HTTTCHHHHTH
T ss_pred HHhhHHHHHHH
Confidence 33455555544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=3.7e-09 Score=94.44 Aligned_cols=161 Identities=8% Similarity=0.028 Sum_probs=83.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---c--CHHHHHHHH
Q 041882 84 YKLARARDFDAVETVLGYIQDF----NIRC-KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV---R--TLQSFNSLL 153 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll 153 (491)
..+...|++++|.+.|...... +-++ ...+++.+..+|...|++++|+..|++....... + -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667777777777665543 2111 1345666666666777777776666665432100 0 123555556
Q ss_pred HHHHhC-CChhhHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh------hHHH
Q 041882 154 DILVDN-DRVDDAKRMFDDADKMGFR-PN----LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV------TYNS 221 (491)
Q Consensus 154 ~~~~~~-~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 221 (491)
.+|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 6666666666655442100 00 2344555555566666666666666555543221110 3444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+..++...|++++|...|++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555666666666555544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=3.5e-08 Score=86.53 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=158.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
++-..-.|++..+..-. .+...........-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 45555678887777632 3222122334444556777777776632 11234443444443333 222
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV-PPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
++..|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 45566666777888888999999999888766653 23667777888888899999999999988
Q ss_pred HHHcCCCC-----CHHHHHHHHHHH--Hh--cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 242 MIKKGTYP-----NAVTYALLMEGL--CF--KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 242 ~~~~~~~~-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
|.+. .| +..+...++.++ .. .+++.+|..+|+++... .|+..+...++.++.+.|++++|++.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 44 245555566553 22 33888899999888665 454333344555788889999999988876
Q ss_pred HHcC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 313 KKRQ-----Y----KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 313 ~~~~-----~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (491)
.+.. . .-++.++..+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 5431 0 2256666455555555676 788888888875 45443
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=2.6e-09 Score=107.13 Aligned_cols=174 Identities=9% Similarity=-0.094 Sum_probs=133.9
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 87 ARARDFDAVETVLGYIQ--------DFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
...|++++|.+.++... +.. +.+...+..+...+...|++++|+..|++..+.+. .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67888899999888887 443 55677888888888889999999999988877653 377888888888889
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 159 NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
.|++++|+..|++..+... -+...+..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998887642 256677888888888999998 8889888876543 677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
|++..+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9888765322 35666667777665554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.4e-08 Score=78.48 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445566666677777777777776665433 55666666777777777777777777766543 3455566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776643 234566667777777777777777777777653
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=2.7e-07 Score=81.80 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH----HhC---CChh
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAH--LVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL----VDN---DRVD 163 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~ 163 (491)
++|+++++.++..+ |-+..+|+.-...+...+ ++++++..++.+...+++ +..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666655 445555665555555555 666666666666554422 444554444433 333 4445
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE--EASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
+++.+++.+.+... -+..+|+.-.-++.+.|.++ ++++.++.+.+.+.. |...|+.....+...+
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 55555555544331 14444444444444444444 444444444444333 4444444444443333
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.5e-08 Score=88.88 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=55.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cCHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK---ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RTLQSF 149 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 149 (491)
+...+-.+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|++++|+..|++.....+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455555556666666666666666666543 223 455556666666666666666666666553211 113445
Q ss_pred HHHHHHHHh--------CCChhhHHHHHHHHHHC
Q 041882 150 NSLLDILVD--------NDRVDDAKRMFDDADKM 175 (491)
Q Consensus 150 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 175 (491)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555555555 56666666666665554
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.6e-07 Score=81.84 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=166.4
Q ss_pred hHHHhhhcCCh-HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH--
Q 041882 47 FVNDLKEIRDP-DEALSLFHRHHQMGSKHSYPSYASLIYKLARAR--DFDAVETVLGYIQDFNIRCKETLFISLIQHY-- 121 (491)
Q Consensus 47 ~~~~l~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 121 (491)
.+..+.+.|.. ++|+..++.++..+ +.+..+|+.-...+...+ +++++++.++.+...+ +-+..+|+.-...+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 44444555544 68999999998865 556667888888888888 9999999999999887 56677777666665
Q ss_pred --Hhc---CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh--hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 122 --GKA---HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD--DAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 122 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
... +++++++.+++++.+.+.. +..+|+.-.-++...|.++ ++++.++++.+.... |...|+.....+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 555 7899999999999887644 8889999888888889888 999999999987643 777887776666666
Q ss_pred CC------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcC
Q 041882 195 GE------WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK-AKGLFEDMIKKG--TYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 195 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~ 265 (491)
+. ++++++.++.+....+. |...|+-+...+.+.|.... +..+.+++.+.+ -..+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 67777777777766544 67777777777777766433 444555554432 1235566666667777667
Q ss_pred CHhHHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAY 279 (491)
Q Consensus 266 ~~~~a~~~~~~~~~ 279 (491)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777776654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.5e-08 Score=88.84 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHS---YPSYASLIYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHY 121 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 121 (491)
....+...|++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|...|+.+.+... +.....+..+..++
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 3344455566666666666655532 222 44555555566666666666666666555421 11134455555555
Q ss_pred Hh--------cCCHHHHHHHHHHhhhC
Q 041882 122 GK--------AHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 122 ~~--------~~~~~~a~~~~~~~~~~ 140 (491)
.. .|++++|+..|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHH
Confidence 55 56666666666665543
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=1.9e-07 Score=89.38 Aligned_cols=203 Identities=12% Similarity=0.045 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.+..+|++++... +.+...|...+.-+...|+.+.|..++++.... |....... .|+...+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHH
Confidence 45667888877753 335777777777778888888888888888877 33322211 22222221221 2222
Q ss_pred HHcC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 041882 313 KKRQ------------YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR-VEDFEGSLKVL 379 (491)
Q Consensus 313 ~~~~------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 379 (491)
...- .......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2210 0011245666677666778899999999988 321 2344455432222222 33689999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+..++.. +.+...+...++...+.|+.+.|..+|+++.+ ....|...+.-=...|+...+-+.++++.
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9888752 22345566677777888999999999998732 46778887764445565444444455544
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=1.8e-08 Score=84.99 Aligned_cols=136 Identities=10% Similarity=-0.035 Sum_probs=65.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+..++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 445555555566666655555554433 45555555555555666666666666555532 3344455555554443332
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041882 372 --FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLV 433 (491)
Q Consensus 372 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 433 (491)
.+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2233334433322 112222233334444455666666666666654 345544444333
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=2.1e-08 Score=84.56 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCCHhHHHHHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL----------------LMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
...+......+...|++++|+..|++..+.... +...+.. +..++...|++++|...++...+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566777889999999999988876322 3455666 77788888888888888888887
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR--AAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 357 (491)
.. +.+...+..+..++...|++++|...|+++.+..+. +...|..+..+|...|+ .+.+...++... .|+..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 74 456677888888888888888888888888887655 67788888877765543 344555555543 33333
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 041882 358 --TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSC 396 (491)
Q Consensus 358 --~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (491)
.+.....++...|++++|...|+++++. .|+......
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3334455666678888888888888874 466544333
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=2.7e-08 Score=76.87 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++.+...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444455555555555555555555443221 34444444444455555555555555444432 2223333344444444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.|++++|...++.+.+.... +...+..+...+...|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44444444444444433221 3333444444444444444444444443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=6.6e-08 Score=81.67 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH----LVDKAIEV 133 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 133 (491)
.+|++.|++..+.| ++.++..+...+...+++++|.+.|+...+.+ ++..+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777654 56677778888888888888888888887765 56667777777776 5 78888888
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCC-CCHHhHHHHHHHHHh----cCChHHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMGFR-PNLISFNVMIKGRLK----KGEWEEASRVF 204 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~ 204 (491)
|++..+.+ +..++..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88877653 66677777777776 67788888888877766421 015666667777776 66778888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRT-G-----EMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 247 (491)
++..+. ..+...+..|..+|... | ++++|..+|+...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777765 12444566666666543 2 67777777777776654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=1.1e-08 Score=83.60 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH-HH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI-LV 157 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 157 (491)
+......+.+.|++++|...++...+.. |.+...+..+...+...|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4444555666666666666666655544 4455666666666666666666666666665443 233222222111 11
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP-TVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
..+....++..+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122234555666555542 1134555566666666666666666666666553321 2345666666666666666666
Q ss_pred HHHHHHH
Q 041882 237 GLFEDMI 243 (491)
Q Consensus 237 ~~~~~~~ 243 (491)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=9.5e-09 Score=103.06 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=122.3
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 192 LKKGEWEEASRVFDEML--------EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56778888888888877 322 335667777778888888888888888887775333 66777777778888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 264 KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKV 343 (491)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 343 (491)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.++. +...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877764 3455667777777888888888 8888887776554 667777788888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 041882 344 LTEMQIGGCKPN-AATYRMMVDGFLRVED 371 (491)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 371 (491)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8877653 444 3455556566554443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=2.3e-08 Score=89.00 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH-H
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-I 188 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l 188 (491)
+...+..+...+...|++++|+..|++...... .+...+..+..++...|++++|...++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 334444455555555555555555555544432 14455555555555555555555555554433 2332222111 1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 041882 189 KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP-NAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 267 (491)
..+...++.+.|...+++..+.... +...+..+...+...|++++|+..|+++.+..... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1233444455555555555544322 44555555555555555555555555555542221 134455555555555555
Q ss_pred hHHHHHHHHH
Q 041882 268 NEAKKMMFDM 277 (491)
Q Consensus 268 ~~a~~~~~~~ 277 (491)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=1.1e-06 Score=84.09 Aligned_cols=345 Identities=10% Similarity=-0.000 Sum_probs=216.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD-FDAVETVLGYIQDF-NI-RCKETLFISLIQHYG----KAHLV 127 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 127 (491)
|+.+.|..+|++.... .|+...|..-+....+.++ .+....+|+..... |. +.+..+|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999873 5799999998888777763 45677888877753 32 346788888877654 34678
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh-------------CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVD-------------NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
+.+..+|++........-...|......-.. .+.+..|..+++.+...--..+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8899999999874211112233322221111 112233344444433210011334555544442221
Q ss_pred --CC-----hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 195 --GE-----WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 195 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+- .+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++.... +.+...+. .|+...+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 345677898888753 446888999999999999999999999999988 33332222 22222111
Q ss_pred hHHHHHHHHHHHcC---------CCC---ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-c
Q 041882 268 NEAKKMMFDMAYRG---------CKP---QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK-E 334 (491)
Q Consensus 268 ~~a~~~~~~~~~~~---------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 334 (491)
++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ .. ...+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 121 22222110 001 1234556666666788899999999999 32 22344555433322222 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
++.+.|..+|+...+.. +-++..+...++-....|+.+.|..+|+++. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46999999999988753 3345555666777778899999999999972 35778888888888889999999998
Q ss_pred HHHHH
Q 041882 415 EEMEK 419 (491)
Q Consensus 415 ~~~~~ 419 (491)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=9.8e-09 Score=84.00 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=127.7
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YG 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 122 (491)
.......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.... + +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHH
Confidence 3456667888999999999999988754 5677889999999999999999999999988765 3 55544433222 22
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
..+....|+..|++.....+ .+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 32334457888998887653 368899999999999999999999999998875332 3567888999999999999999
Q ss_pred HHHHHHHh
Q 041882 202 RVFDEMLE 209 (491)
Q Consensus 202 ~~~~~~~~ 209 (491)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=7.7e-09 Score=82.03 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=91.1
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+...|+.++|+..++...... +.+...+..+...|.+.|+++.|.+.|+...+.. +.+..++..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 345567777777777666532 2233455566777777777777777777777765 55677777777777777777777
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHH-HHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRM-FDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
+..|++..+.++. +..+|..+..++.+.|+++++... +++..+.. +-+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777777665422 566777777777777777665544 46665542 124455555555555444
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.2e-07 Score=80.01 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC----ChhhHHHHH
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND----RVDDAKRMF 169 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 169 (491)
+|.+.|+...+.+ ++..+..+...|...+++++|++.|++..+.+ +..++..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666654 56677777777777788888888888877654 56677777777766 5 777888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCChhHHHHHHH
Q 041882 170 DDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVP-PTVVTYNSLIGFLCR----TGEMGKAKGLFE 240 (491)
Q Consensus 170 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 240 (491)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 67777777777777766421 015666777777776 667777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHcC
Q 041882 241 DMIKKGTYPNAVTYALLMEGLCFK-G-----EYNEAKKMMFDMAYRG 281 (491)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 281 (491)
+..+.+ .+...+..+...|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776651 1333455555555432 2 6777777777766665
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=4.4e-09 Score=83.44 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+...|++++|+..+++..... +.+...+..+...|...|++++|++.|++.++.. +-+..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334455555555555544322 1123334445555555555555555555555442 11344555555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGL-FEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
...|+...+.... +...|..+...|.+.|++++|.+. +++..+.... ++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 5555555554322 445555555555555555443332 3444443221 4444444444444443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.4e-08 Score=97.23 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=120.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988754 5567889999999999999999999999999886 66788999999999999999999999
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK---GEWEEASRVFDEMLER 210 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 210 (491)
|++..+... .+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988653 378899999999999999999999999998764 23567888899999999 9999999999999886
Q ss_pred CC
Q 041882 211 EV 212 (491)
Q Consensus 211 ~~ 212 (491)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=4.4e-08 Score=87.13 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-HHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTY-NSLI 223 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 223 (491)
+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555666666666777777777777666543 1244556666666677777777777776665542 232222 2222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCh
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP-QLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 302 (491)
..+...++.++|...+++...... .+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234555666666666666666532 255666666666777777777777777666653111 144566666666666776
Q ss_pred HHHHHHHHHHH
Q 041882 303 EEAKSLLSEMK 313 (491)
Q Consensus 303 ~~a~~~~~~~~ 313 (491)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666543
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.8e-07 Score=79.81 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRC--KETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
...+..+...+.+.|++++|...|+.+.+..... ....+..+..++.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3455556666777788888888887777653211 13566677777777788888888777776654
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=2.8e-07 Score=78.63 Aligned_cols=202 Identities=10% Similarity=0.042 Sum_probs=108.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVP-P-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA--VTYALL 257 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 257 (491)
..+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445566677777777777777777764321 1 1245666777777777777777777777765332111 133333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
..++...+.. .+. .+..+...+...|+.++|...|+++.+..+. +...+.......
T Consensus 85 g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~------ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV------ 140 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH------
T ss_pred HHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH------
Confidence 3333332210 000 1112222333456677777777777765332 222222111100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHcCCCHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR----LETFSCLLVGLLKGGKVDDACFV 413 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 413 (491)
.+...+. .....+...+...|++++|...|+++++.. |+ ...+..+..++.+.|++++|.+.
T Consensus 141 ----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 141 ----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp ----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 011234566777888888888888887752 32 24567777888888888888888
Q ss_pred HHHHHHCC
Q 041882 414 LEEMEKRK 421 (491)
Q Consensus 414 ~~~~~~~~ 421 (491)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 88777653
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=6e-08 Score=95.49 Aligned_cols=155 Identities=9% Similarity=-0.033 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHH
Q 041882 89 ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRM 168 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (491)
.|++++|.+.++...+.. +.+...+..+...+...|++++|++.|++..+... .+..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988775 56788999999999999999999999999988763 3788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 041882 169 FDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT---GEMGKAKGLFEDMIKK 245 (491)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 245 (491)
+++..+.. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998864 235778889999999999999999999999886533 678889999999999 9999999999999886
Q ss_pred CC
Q 041882 246 GT 247 (491)
Q Consensus 246 ~~ 247 (491)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=6.2e-08 Score=87.13 Aligned_cols=185 Identities=11% Similarity=-0.011 Sum_probs=98.2
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--hhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKK----GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KPQ--LVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~ 294 (491)
.|...|++++|...|.+..+. +... -..+|..+...|...|++++|...+++..+... .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544332 1000 022444555555555666666555555443210 111 234455556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKP-----DVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKPN-AATYRMMVD 364 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~ 364 (491)
+|.. |++++|+..|++..+..... ...+++.+...|...|++++|+..|++..+. +..++ ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777777776665431110 1346677777788888888888888877652 11111 124555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHHcCCCHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHC-PR---LETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
++...|++++|...|++.+ .... ++ ......++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6667788888888888877 4211 11 12234444444 4666665555
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=4.6e-06 Score=74.73 Aligned_cols=174 Identities=9% Similarity=-0.033 Sum_probs=116.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC-C-Chh
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN-D-RVD 163 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~ 163 (491)
.+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++.+++.+...+.+ +..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33445568999999998887 667788888777777777 588999999988887644 778888877777766 6 778
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE--------EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE---- 231 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---- 231 (491)
+++++++.+.+... -|...|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 88888888887642 26666666555555555555 666677776665544 66666666666666554
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 232 ---MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 232 ---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
++++++.+++++..... |...|+-+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45666666665554333 5555554444444433
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=5e-06 Score=74.46 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=141.4
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 041882 53 EIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARAR-DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA-H-LVDK 129 (491)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 129 (491)
..+..++|+++++.++..+ +.+..+|+.-...+...+ +++++++.++.+...+ +-+..+|+.....+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3456678999999999865 556677888888888888 5999999999999887 66888898888777776 7 8999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-----
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD--------DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGE----- 196 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----- 196 (491)
++++++++.+.+.. |..+|+.-.-++...|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 99999999988744 8889988777777766666 899999999987643 77888888877777776
Q ss_pred --hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 041882 197 --WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM 232 (491)
Q Consensus 197 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 232 (491)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 68899999888887554 888888877777776654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.2e-07 Score=85.24 Aligned_cols=227 Identities=12% Similarity=0.111 Sum_probs=130.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|.+++++..... +.+ + +...++++.|...|... ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467778888887766422 111 0 11135666666665543 3455666777777777
Q ss_pred HHHhhhC----CCC-cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC--C-CCC--HHhHHHHHHHHHhcCChHHHHHH
Q 041882 134 FNRMTSF----DCV-RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG--F-RPN--LISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 134 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~p~--~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
|.+.... +-. .-..+|+.+..+|...|++++|+..|++..+.- . .+. ..+++.+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 6665432 100 013466777777777777777777777654431 0 111 3456666667766 777777777
Q ss_pred HHHHHhCCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHH
Q 041882 204 FDEMLEREVP-----PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 204 ~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|++..+.... ....++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776543110 01356677777788888888888888777653 11111 22455566666777888888888
Q ss_pred HHHHHHcCCCC-Ch---hcHHHHHHHHHhcCChHHHHHH
Q 041882 274 MFDMAYRGCKP-QL---VNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 274 ~~~~~~~~~~~-~~---~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
|++.. ..... +. .....++.++ ..++.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 87776 43111 11 1233444444 45666665553
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.1e-06 Score=74.04 Aligned_cols=124 Identities=15% Similarity=-0.012 Sum_probs=65.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...|++.. .|+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3344445555555555555442 2345555555555555555555555555555432 3344455555555555555
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 372 FEGSLKVLNAMLTSRHC--------------P-RLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+++|...|+++.+.... | ....+..+..+|...|++++|...|+++.+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555553210 0 1245555666666666666666666666644
No 120
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.4e-07 Score=77.00 Aligned_cols=125 Identities=10% Similarity=0.138 Sum_probs=102.1
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YGKAHLV 127 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 127 (491)
..+...|++++|+..|+...... +.+...+..+...+...|+++.|...++...+.. +.+...+..+... +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 44677899999999999988754 5677889999999999999999999999988876 5577888888888 7788998
Q ss_pred --HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 041882 128 --DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 128 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 176 (491)
++|+..|++....+. .+...+..+..++...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999887653 367888889999999999999999999988763
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=3.7e-06 Score=74.88 Aligned_cols=162 Identities=9% Similarity=-0.047 Sum_probs=86.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC-CcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC----HHhHHH
Q 041882 117 LIQHYGKAHLVDKAIEVFNRMTSFDC-VRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PN----LISFNV 186 (491)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 186 (491)
.+..+...|++++|...+++...... .++. ..+..+...+...+++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35556666777777777776655321 1111 12233555555556667777777666653211 12 124566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER-----EVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYA 255 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 255 (491)
+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666666666665531 1111 1225556666666666666666666665532 11111 34555
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHH
Q 041882 256 LLMEGLCFKGE-YNEAKKMMFDMA 278 (491)
Q Consensus 256 ~ll~~~~~~~~-~~~a~~~~~~~~ 278 (491)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55566666663 466666555544
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=3.3e-06 Score=75.23 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCC-CCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHH
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGF-RPNLI----SFNVMIKGRLKKGEWEEASRVFDEMLEREVP-PT----VVTYNS 221 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 221 (491)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...|+...+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35666777777777777777765421 12211 2223444555566777777777777663222 12 224666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-hhcHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKK-----GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GCKPQ-LVNFG 290 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 290 (491)
+..+|...|++++|+..|+++.+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777776631 1111 1224555556666666666666666555432 11111 23444
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHH
Q 041882 291 VLMSDLGKRGK-IEEAKSLLSEM 312 (491)
Q Consensus 291 ~ll~~~~~~~~-~~~a~~~~~~~ 312 (491)
.+..++.+.|+ +++|...+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 45555555552 35555555444
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=1.7e-06 Score=72.90 Aligned_cols=125 Identities=13% Similarity=-0.018 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
.+...+...|++++|...++... .++...+..+..++...|++++|...++...+.... +...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444455555555555555442 334455555555555666666666666655554332 4555666666666666
Q ss_pred CHHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 336 RAAEAYKVLTEMQIGG--------------CKP-NAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~--------------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
++++|...|++..+.. ..| ....+..+..++...|++++|...|+++.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666665532 011 1245666666777777777777777777764
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=3.1e-06 Score=75.38 Aligned_cols=165 Identities=10% Similarity=-0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh-----hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--HHH
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL-----VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK---PD--VVT 323 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 323 (491)
+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455556666666666666655554211110 11223445556667777777777776643211 11 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHH
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIG-GCKPN-----AATYRMMVDGFLRVEDFEGSLKVLNAMLTSR----HCP-RLE 392 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 392 (491)
|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777788888888888888888877621 00111 1467777778888888888888888776531 111 156
Q ss_pred hHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDA-CFVLEEME 418 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 418 (491)
+|..+..+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 677788888888888888 66677655
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=8.7e-07 Score=67.58 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+......+.+.|++++|.+.|+...+.. +.+..++..+..++.+.|++++|+..|++..+.+. .+..+|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 44555666666666666666666666654 45566666666666666666666666666655542 25566666666666
Q ss_pred hCCChhhHHHHHHHHHHC
Q 041882 158 DNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~ 175 (491)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666654
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.9e-06 Score=69.19 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
+..+...+...|++++|...|++..+.... +..++..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 333444444444444444444444433211 33344444444444444444444444444332 2223333333444444
Q ss_pred cCChHHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKK 314 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~ 314 (491)
.|++++|...++++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444433
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=2e-06 Score=69.03 Aligned_cols=127 Identities=12% Similarity=-0.001 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344445555556666666666555554332 45555566666666666666666666655542 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHcCCCHHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFS--CLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.|++++|...++++.+.. +.+...+. ..+..+...|++++|...++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666666542 12233332 22233555666666666666554
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=1.5e-06 Score=66.24 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=7.6
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 041882 224 GFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~ 243 (491)
..|.+.|++++|++.|++.+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al 40 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAV 40 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.1e-05 Score=71.86 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---CC--hh
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-----VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK---PQ--LV 287 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 287 (491)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+....+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566667777777777777776654322111 12333445566777888888888777653211 11 33
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKK---RQYK-P--DVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKP-NA 356 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 356 (491)
+++.+...|...|++++|...++++.+ .... + ...++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888887762 2111 1 1257788888888999999999988887643 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 041882 357 ATYRMMVDGFLRVEDFEGS-LKVLNAMLT 384 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 384 (491)
.+|..+..++...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888888899999998 777777654
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1.6e-06 Score=74.99 Aligned_cols=190 Identities=12% Similarity=-0.044 Sum_probs=134.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhc------------CC------
Q 041882 53 EIRDPDEALSLFHRHHQMGSKHSYPSYASL-------IYKLARARDFDAVETVLGYIQDF------------NI------ 107 (491)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~------ 107 (491)
..+++..|++.|.++.+.. +-....|..+ ...+.+.++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4789999999999999865 5567778777 46666665556655555554441 10
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHh
Q 041882 108 --RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LIS 183 (491)
Q Consensus 108 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~ 183 (491)
.........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0013445567778888999999999999887765 333366666778888999999999998554431 111 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPT--VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+..+-.++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66777888899999999999998875433243 3456677778888999999999999988763
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=3e-07 Score=81.37 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=117.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|+..+++....+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667777788888888888888888888765 55778888888888888888888888888877653 36778888888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNL-ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
++...|++++|...|++..+.. |+. ..+...+....+. ..+.. +........+.+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8888888888888888776542 211 0111111111111 11111 112222233334433333322 2 257777
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CCHhHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAV-TYALLMEGLCFK-GEYNEAKKMMFDMAY 279 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 279 (491)
+|++.++...+. .|+.. ....+...+.+. +.+++|.++|....+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776654 33332 223333333333 556677777776654
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.4e-07 Score=75.28 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCh
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM----GFRP--NLISFNVMIKGRLKKGEWEEASRVFDEMLER----EVP-PTV 216 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 216 (491)
++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444445555444444443322 1011 1223444444555555555555555544321 100 011
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.++..+...+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2234555555566666666665555543
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=3.3e-06 Score=66.47 Aligned_cols=95 Identities=11% Similarity=-0.088 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|+++++.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444555555555555555554432 3334445555555555555555555555555432 123444455555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=4.7e-07 Score=80.13 Aligned_cols=192 Identities=9% Similarity=0.023 Sum_probs=91.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 181 LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEG 260 (491)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (491)
...+..+...+.+.|++++|...|+...+.... +...|..+..+|...|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344445555555666666666666655554222 455556666666666666666666666655422 245555556666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 339 (491)
+...|++++|...|....+.. |+ ...+...+....+. ..+. -+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666555432 11 00111111111110 1111 11112222233333333333222 2466777
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc-CCHHHHHHHHHHHHh
Q 041882 340 AYKVLTEMQIGGCKPNAATYR-MMVDGFLRV-EDFEGSLKVLNAMLT 384 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~-~~~~~a~~~~~~~~~ 384 (491)
|++.+++..+. .|+..... .+...+... +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77776666543 44443322 222223333 456677777776654
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=6.1e-07 Score=74.94 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHhcCChH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFR-PNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~~~~ 198 (491)
.|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +.. .....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333222 11123445555555555555555555555554431 111 12344555566666666666
Q ss_pred HHHHHHHHHHhC----CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCH
Q 041882 199 EASRVFDEMLER----EVP--PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYP-NAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 199 ~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~ 267 (491)
+|.+.+++..+. +.. .....+..+...+...|++++|...+++.... +... -..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666655432 111 12334555666666666666666666665532 1100 112345555666666666
Q ss_pred hHHHHHHHHHHH
Q 041882 268 NEAKKMMFDMAY 279 (491)
Q Consensus 268 ~~a~~~~~~~~~ 279 (491)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=2.4e-06 Score=73.99 Aligned_cols=188 Identities=7% Similarity=-0.046 Sum_probs=105.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHH-------HHHHHhCCChhhHHHHHHHHHHCCCCCCH--------------
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSL-------LDILVDNDRVDDAKRMFDDADKMGFRPNL-------------- 181 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------------- 181 (491)
..++...|.+.|.++...++. ....|..+ ..++...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467777777777777766532 56677666 3445444445555554444332 22211
Q ss_pred --------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--H
Q 041882 182 --------ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN--A 251 (491)
Q Consensus 182 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 251 (491)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122334556667777777777777666543 222244555556677777777777776443321 110 2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ--LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2455566666677777777777776654322132 2233444555666666777777776666653
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=3.2e-06 Score=63.89 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=7.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~ 242 (491)
+...+...|++++|.+.++++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-06 Score=66.17 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...+.. +.+..++..+...+...|++++|+..+++...... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444444432 22344444444444444444444444444433321 13344444444444
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=0.00011 Score=65.54 Aligned_cols=166 Identities=10% Similarity=0.017 Sum_probs=96.6
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 87 ARARDFD-AVETVLGYIQDFNIRCKETLFISLIQHYGKAHL----------VDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 87 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.+.|.++ +|+++++.+...+ |-+..+|+.--..+...+. +++++.+++.+...+++ +..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455554 5677777777665 4455555544333333222 56667777776665533 66677666666
Q ss_pred HHhCC--ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 041882 156 LVDND--RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGE-WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT--- 229 (491)
Q Consensus 156 ~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 229 (491)
+...+ .+++++.+++.+.+... -|...|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 66666 36677777777766542 255666665555566666 46777777777666544 666666655555444
Q ss_pred -----------CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 230 -----------GEMGKAKGLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 230 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (491)
+.++++++.++..+...+. |...|+-+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3355666666666655333 55555433
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=8e-05 Score=66.37 Aligned_cols=193 Identities=8% Similarity=-0.050 Sum_probs=142.9
Q ss_pred HHHhhhcCChH-HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCHHHHHH
Q 041882 48 VNDLKEIRDPD-EALSLFHRHHQMGSKHSYPSYASLIYKLARARD----------FDAVETVLGYIQDFNIRCKETLFIS 116 (491)
Q Consensus 48 ~~~l~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (491)
+....+.|..+ +|+.+++.+...+ +.+..+|+.--..+...+. ++++...++.+...+ +-+..+|+.
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33344556555 8999999999865 4455566655544444433 678999999998877 668889998
Q ss_pred HHHHHHhcC--CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 117 LIQHYGKAH--LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 117 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
-...+...+ .+++++.+++++.+.+.. |..+|+.-.-++...|. ++++++.++.+.+..+. |...|+.....+.+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 888888888 489999999999988744 88999998888888888 58999999999987643 77778777666655
Q ss_pred c--------------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHc
Q 041882 194 K--------------GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT-----------GEMGKAKGLFEDMIKK 245 (491)
Q Consensus 194 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~ 245 (491)
. +.++++++.+.......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 5 4578899999988876544 777787555555444 3456677777777665
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=2.4e-06 Score=65.24 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...... +.+...+..+...+...|++++|+..+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444444555555555555444433 2334444444444444555555555544444332 113344444444444
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=5.3e-06 Score=62.63 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
.+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444555555555555555555555544322 44555555666666666666666666655432 334455555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 368 RVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
..|++++|...++++.+.. +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6666666666666665532 123344444444443
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=9.1e-07 Score=69.70 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|.+.|+.+...+ |.+...|..+..++...|++++|+..|++....++. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444444444555555555555544443 334444444555555555555555555544443321 3444444444555
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544444
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=8e-07 Score=70.02 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=68.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|+..|++....+. .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455666667777777777777777777665 55667777777777777777777777777766542 25566777777
Q ss_pred HHHhCCChhhHHHHHHHHHHC
Q 041882 155 ILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~ 175 (491)
++...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=3.7e-06 Score=64.16 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=36.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (491)
...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCH
Confidence 33333444444444444443333221 33334444444444444444444444443321 22233344444444444444
Q ss_pred HHHHHHHHHHHh
Q 041882 373 EGSLKVLNAMLT 384 (491)
Q Consensus 373 ~~a~~~~~~~~~ 384 (491)
++|...+++..+
T Consensus 97 ~~A~~~~~~~~~ 108 (131)
T 2vyi_A 97 VEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.7e-06 Score=65.28 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+.... +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 333333444444444444444444332211 3333333344444444444444444443332111 23333333333333
Q ss_pred cCCHhHHHHHHHHH
Q 041882 264 KGEYNEAKKMMFDM 277 (491)
Q Consensus 264 ~~~~~~a~~~~~~~ 277 (491)
.|++++|...++..
T Consensus 97 ~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 97 MKDYTKAMDVYQKA 110 (133)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 34444444333333
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.2e-06 Score=71.42 Aligned_cols=19 Identities=0% Similarity=0.244 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~ 383 (491)
.+...|++++|...|+++.
T Consensus 124 ~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 3333333333333333333
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.2e-06 Score=68.97 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++++... +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233344444444444444444444444444431 1123344444444444
Q ss_pred CCCHHHHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEME 418 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~ 418 (491)
.|++++|...|++..
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=4.3e-06 Score=76.02 Aligned_cols=87 Identities=7% Similarity=-0.143 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (491)
..|..+..+|.+.|++++|+..++..++.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554442 223444444455555555555555555555444332 444455555555
Q ss_pred HhcCCHHHH
Q 041882 332 CKEDRAAEA 340 (491)
Q Consensus 332 ~~~~~~~~a 340 (491)
...|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=4e-06 Score=76.18 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041882 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVG 400 (491)
Q Consensus 321 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (491)
...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++++.. +.+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4567777788888888888888888877754 4566777778888888888888888888887753 2356677777788
Q ss_pred HHcCCCHHHH-HHHHHHHH
Q 041882 401 LLKGGKVDDA-CFVLEEME 418 (491)
Q Consensus 401 ~~~~g~~~~a-~~~~~~~~ 418 (491)
+.+.|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877 44566554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.4e-06 Score=63.10 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+.+.|++++|.+.|+...+.. +.+...+..+..++.+.|++++|+..|++....+. .+..+|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345555666666666666666666666654 44566666666666666666666666666665542 2455666666666
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=5.3e-07 Score=75.13 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PN--------------LISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
..+..+...+...|++++|+..|++..+.... |+ ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555555566666666666655543111 10 1445555555556666666666666655542
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
. .+...+..+..+|...|++++|...|++..+.... +...+..+..++...++..++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555555556666666666666666665554222 3444444444444444444333
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=4.4e-06 Score=63.75 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHhHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR--HCPR----LETFS 395 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~ 395 (491)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777776643 4455666777777777777777777777776531 1111 23566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041882 396 CLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431 (491)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (491)
.+..++...|++++|++.|++..+. .||+.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6677777788888888888877653 455554443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2e-06 Score=67.17 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|...|+.+...+ +.+...+..+..++...|++++|+..|++....+. .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34444555555666666666666655554 44555555566666666666666666666555432 24455555555666
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655544
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=7.7e-07 Score=74.16 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.+..+...+...|++++|+..|++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=7e-06 Score=62.61 Aligned_cols=96 Identities=7% Similarity=0.093 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cC----HHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RT----LQSFNS 151 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 151 (491)
++..+...+.+.|++++|.+.|+...+.. |.+...|..+..+|...|++++|++.+++..+.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666667777777777777666655 445666666666777777777777666665543210 00 124555
Q ss_pred HHHHHHhCCChhhHHHHHHHHHH
Q 041882 152 LLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666666554
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-05 Score=61.04 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44455555555666666666666555432 3345555555566666666666666666665542 123455555666666
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.7e-05 Score=59.04 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...... +.+...+..+...+...|++++|...+++...... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44445555555555555555555555543 33445555555555555555555555555544331 23445555555555
Q ss_pred hCCChhhHHHHHHHHHHC
Q 041882 158 DNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~ 175 (491)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=2.7e-06 Score=66.49 Aligned_cols=98 Identities=14% Similarity=0.011 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKG 190 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 190 (491)
...+..+...+.+.|++++|+..|++....+. .+...|..+..++...|++++|+..|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 34445555566666666666666666655442 255666666666666666666666666666543 2234455556666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 041882 191 RLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~ 210 (491)
+...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=3.2e-05 Score=57.51 Aligned_cols=91 Identities=16% Similarity=0.059 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...++......+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 333344444444444444444433222 33444444444444444444444444444321 2233344444444444444
Q ss_pred HHHHHHHHHHHHh
Q 041882 372 FEGSLKVLNAMLT 384 (491)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (491)
+++|...+++..+
T Consensus 88 ~~~A~~~~~~~~~ 100 (118)
T 1elw_A 88 FEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=7.2e-06 Score=60.54 Aligned_cols=96 Identities=8% Similarity=-0.007 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 155 (491)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|+..|++..... +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44444555555555555555555555443 3344455555555555555555555555554432 12 34455555555
Q ss_pred HHhC-CChhhHHHHHHHHHHC
Q 041882 156 LVDN-DRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~-~~~~~a~~~~~~~~~~ 175 (491)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.4e-05 Score=61.75 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..+...+...|+++.|...++...... +.+...+..+..++...|++++|+..+++....+. .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344555555666666666666666666655554 34455566666666666666666666666555432 2455555566
Q ss_pred HHHHhCCChhhHHHHHHHHHH
Q 041882 154 DILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~ 174 (491)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655544
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.3e-05 Score=64.23 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+..++.+.|++++|+..|++....+. .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777778888888888888888888776 55778888888888888888888888888877653 36778888888
Q ss_pred HHHhCCChhhHHHHHHHHHHC
Q 041882 155 ILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~ 175 (491)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887765
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.4e-05 Score=61.09 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=66.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHS----YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
......+...|++++|+..|++..+.. |+ ...+..+...+...|++++|.+.++...+.. +.+...+..+..+
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 108 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence 345556667788888888888777643 44 5566777777777777777777777777664 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhCC
Q 041882 121 YGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~ 141 (491)
+...|++++|...|++.....
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777777776643
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1.7e-05 Score=63.58 Aligned_cols=94 Identities=6% Similarity=-0.004 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+..++..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444555555555555555444332 44455555555555555555555555554432 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 041882 369 VEDFEGSLKVLNAMLT 384 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~ 384 (491)
.|++++|...|++.++
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=1.5e-05 Score=58.82 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP--RLETFSCLLVG 400 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 400 (491)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44445555555555555555555554432 3344455555555555666666666666655542 12 34555555566
Q ss_pred HHcC-CCHHHHHHHHHHHHHC
Q 041882 401 LLKG-GKVDDACFVLEEMEKR 420 (491)
Q Consensus 401 ~~~~-g~~~~a~~~~~~~~~~ 420 (491)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666665543
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.6e-05 Score=72.71 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=36.5
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCH----------------HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSY----------------PSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
.-.+.+...|++++|++.|..+......... .++..++..|...|++++|.+.+..+..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456678889999999999888764322111 1245555666666666666666655443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.5e-05 Score=71.38 Aligned_cols=197 Identities=15% Similarity=0.097 Sum_probs=137.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-cC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCK----------------ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV-RT 145 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 145 (491)
.+.+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+.+.++...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999887542211 134778899999999999999999887543111 11
Q ss_pred H----HHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 041882 146 L----QSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLER--EV-- 212 (491)
Q Consensus 146 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-- 212 (491)
. .+.+.+...+...|+++.+..++...... +..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455568899999988876542 22222 456777888999999999999999887653 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTY-P-N--AVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+....++..++..|...|++++|..++++.... ... | . ...+..+...+...+++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112457888889999999999999999887643 111 1 1 23455566667788899999888777654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=9.5e-06 Score=61.85 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cC----HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RT----LQSFN 150 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 150 (491)
..+..+...+...|+++.|...++...... +.+...+..+...+...|++++|...+++....... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666654 445566666666666677777777666666543211 11 45566
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+..++...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666554
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2.8e-05 Score=59.97 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLV 399 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (491)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666666666666666666665543 3345566666666666666666666666666643 224556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 041882 400 GLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~ 419 (491)
++...|++++|...|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66677777777776666654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=9.9e-06 Score=61.74 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHhHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH--CPR----LETFSC 396 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 396 (491)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444455555555555555544432 23344444445555555555555555555444310 011 344455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..++...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.4e-05 Score=59.07 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN----LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNS 221 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (491)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 334444444444444444444444444433 222 233444444444445555555544444443211 3344444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555554444
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=5.4e-05 Score=73.71 Aligned_cols=175 Identities=9% Similarity=-0.026 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 301 KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR----------AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
..++|.+.++.+.+.++. +..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778888888887666 67777777766766666 888999999888764 567778888777788888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 041882 371 --DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGG-KVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG------ 441 (491)
Q Consensus 371 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------ 441 (491)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++++.+.... |...|+.....+....+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999998864 346778888888888888 889999999988876443 67788877776665322
Q ss_pred --------CcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhh
Q 041882 442 --------NAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 442 --------~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 481 (491)
.+++++.+.+.+.. .|++...+..++|++...|+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~~ 245 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDVL 245 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSCE
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccce
Confidence 24445555544443 499999999999999999987664
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=8.3e-06 Score=61.55 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=63.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344556666777777777777776644 4456667777777777777777777777777665 44566677777777777
Q ss_pred CCHHHHHHHHHHhhhC
Q 041882 125 HLVDKAIEVFNRMTSF 140 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~ 140 (491)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.1e-05 Score=60.80 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|+..|++....+.. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445566667777777777777777765 556677777777777777777777777777665422 56677777777777
Q ss_pred CCChhhHHHHHHHHHHC
Q 041882 159 NDRVDDAKRMFDDADKM 175 (491)
Q Consensus 159 ~~~~~~a~~~~~~~~~~ 175 (491)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=7.8e-06 Score=78.08 Aligned_cols=120 Identities=8% Similarity=0.032 Sum_probs=75.7
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.++...+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344566777777777777777643 4456677777777777777777777777777765 45566777777777777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHH--HHhCCChhhHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDI--LVDNDRVDDAKRMFD 170 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 170 (491)
++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776654321 33344444444 566667777777666
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=8.4e-06 Score=61.10 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
.|++++|+..|++..+.+ .+.+...+..+...+...|++++|.+.++...+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 13344566777777777777777777777777765 455677777777777777777777
Q ss_pred HHHHHhhhC
Q 041882 132 EVFNRMTSF 140 (491)
Q Consensus 132 ~~~~~~~~~ 140 (491)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=8.6e-05 Score=56.40 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC---HHHHHHHHHH
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT---LQSFNSLLDI 155 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 155 (491)
+...+...|++++|.+.++.+.+.. +.+. ..+..+...+...|++++|+..|++....... + ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555556666666665555543 2222 34555555555556666666555555443311 2 3445555555
Q ss_pred HHhCCChhhHHHHHHHHHHC
Q 041882 156 LVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (491)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555543
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.9e-05 Score=62.68 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKP-NAAT 358 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 358 (491)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344445555555666665555554432100 01 135556666666777777777777665432 1001 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666677777777777777766643 111 1134566677777788888888888877664
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=2.7e-05 Score=61.84 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIR-CK----ETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
++..+...+...|++++|.+.++...+.... .+ ..++..+...+...|++++|...+++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555566666666666554432100 01 123444555555555555555555544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=0.00024 Score=53.87 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR---LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..+..++...|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444444321 011 23333444444444444444444444443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=1.7e-05 Score=75.82 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=63.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666666555333 45566666666666666666666666666542 33455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHH--HHcCCCHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVG--LLKGGKVDDACFVLE 415 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 415 (491)
.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 1122333333333 555666666666665
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=7.7e-05 Score=59.49 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDF--------N---------IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
..+......+.+.|+++.|...|...... . -+.+..++..+..+|.+.|++++|+..+++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566677777888888888888776654 1 022335666777777777777777777777766
Q ss_pred CCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 140 FDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+. .+..+|..+..++...|++++|...|++..+.
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 35667777777777777777777777777664
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=0.00011 Score=69.83 Aligned_cols=86 Identities=8% Similarity=-0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
|..+..+|.+.|++++|...++++.+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++..
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444445555555555444444332 44444445555555555555555555554431 1222344444444444
Q ss_pred cCCHHHHH
Q 041882 369 VEDFEGSL 376 (491)
Q Consensus 369 ~~~~~~a~ 376 (491)
.++.+++.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00055 Score=66.60 Aligned_cols=170 Identities=9% Similarity=-0.017 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC--
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL----------VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND-- 160 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 160 (491)
++|.+.++.+...+ +-+..+|+.--..+...|+ ++++++.++++...+.+ +..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 46677777777766 5566667666666665555 78888888888776643 7778877777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG-EWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT---------- 229 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 229 (491)
+++++++.++++.+.... +...|+.-...+.+.| .++++++.++++.+..+. |...|+....++...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 568888888888776533 6677777766777777 778888888888776554 677777776666653
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 230 ----GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 230 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+.++++++.+++.+..... |...|.-.-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4568888888888876443 666777766666666653
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=9.9e-05 Score=70.11 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041882 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVG 400 (491)
Q Consensus 321 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (491)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5678888899999999999999999998764 5567888888999999999999999999998853 2355677888888
Q ss_pred HHcCCCHHHHHH-HHHHHH
Q 041882 401 LLKGGKVDDACF-VLEEME 418 (491)
Q Consensus 401 ~~~~g~~~~a~~-~~~~~~ 418 (491)
+.+.|+.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888887664 455554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=9.4e-05 Score=67.97 Aligned_cols=90 Identities=10% Similarity=0.003 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
+..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555566666666666666666666665542 123455555566666666666666666665554322 4455555555
Q ss_pred HHHhcCChhHHH
Q 041882 225 FLCRTGEMGKAK 236 (491)
Q Consensus 225 ~~~~~~~~~~a~ 236 (491)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.4e-05 Score=59.77 Aligned_cols=86 Identities=7% Similarity=-0.165 Sum_probs=52.8
Q ss_pred cCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHH
Q 041882 89 ARDFDAVETVLGYIQDFN--IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAK 166 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 166 (491)
.|++++|...|+...+.+ -+.+...+..+...+...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1334456666666777777777777777776665422 5666666677777777777777
Q ss_pred HHHHHHHHC
Q 041882 167 RMFDDADKM 175 (491)
Q Consensus 167 ~~~~~~~~~ 175 (491)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666554
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00014 Score=57.95 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22333444444444444444444444444444
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=0.00013 Score=67.10 Aligned_cols=137 Identities=8% Similarity=-0.092 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG 297 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (491)
.+..+...+.+.|++++|+..|++.++.- +.. ......+.+ .... +.+...+..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHH
Confidence 45666777777788888887777776520 000 000000000 0000 112334444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.|++++|...++++.+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554332 45555555555555566666666555555432 223444444444444445444443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00024 Score=55.44 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC------
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRC------KE-----TLFISLIQHYGKAHLVDKAIEVFNRMTSF------ 140 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 140 (491)
.+......+.+.|++++|.+.|+...+..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455556666777777777777766653210 11 25555555556666666666555555543
Q ss_pred -CCCcCHHHH----HHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 141 -DCVRTLQSF----NSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 141 -~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+. .+...| .....++...|++++|+..|++..+
T Consensus 93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21 133444 5555555555555555555555433
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00099 Score=51.28 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 130 (491)
+++++|+..|++..+.| .+.. . +...+...+.++.|.+.|+...+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666777777666655 2222 2 4555555556666666666666654 45555666666655 5666666
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCC
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 176 (491)
++.|++..+.| +..++..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666543 45555666666655 566666666666665554
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=0.00011 Score=66.56 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|++++|+..|++.... .|+... +...+++.++...+ ....+..+..++.+.|++
T Consensus 186 g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 186 GNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcCCH
Confidence 33445567888888888776653 233221 11111122211111 012566666667777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHH-HHhcCChHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKG-RLKKGEWEEASRVFD 205 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~ 205 (491)
++|+..+++....+. .+..+|..+..+|...|++++|...|++..+.. |+ ...+..+... ....+..+.+.+.|.
T Consensus 247 ~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665542 256667777777777777777777777665442 32 2333333333 223345566666666
Q ss_pred HHHhC
Q 041882 206 EMLER 210 (491)
Q Consensus 206 ~~~~~ 210 (491)
.|...
T Consensus 324 ~~l~~ 328 (338)
T 2if4_A 324 GIFKG 328 (338)
T ss_dssp -----
T ss_pred HhhCC
Confidence 66544
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00086 Score=51.63 Aligned_cols=110 Identities=11% Similarity=-0.024 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEAS 201 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 201 (491)
++++|++.|++..+.+ .++. . |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555554443 1121 1 4444444444555555555555442 34444444444544 45555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 246 (491)
++|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34455555555555 555566666665555554
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=0.00012 Score=66.34 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
...+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+. ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666666677777777777777776654 222211 122222333222111 1244555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+.+.|++++|...++...+.... +...|..+..+|...|++++|...|++..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554332 455555555566666666666666655543
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=0.0006 Score=53.14 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.....++...|++++|+..|++..
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHH
Confidence 555556666666666666666554
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=7.8e-05 Score=54.83 Aligned_cols=90 Identities=7% Similarity=-0.102 Sum_probs=50.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC------HHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT------LQSF 149 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 149 (491)
...+..+...+...|++++|.+.++...+.. +.+...+..+..++...|++++|+..+++....... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3455556666666666666666666666554 445566666666666666666666666666554321 2 3344
Q ss_pred HHHHHHHHhCCChhhHHH
Q 041882 150 NSLLDILVDNDRVDDAKR 167 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~ 167 (491)
..+..++...|+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00014 Score=69.01 Aligned_cols=86 Identities=7% Similarity=-0.015 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-CCC-HHhHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-----GF-RPN-LISFNVM 187 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l 187 (491)
...|++++|+.++++.... | .+....+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555444321 1 0112334555555555555555555555544321 10 111 2334444
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~ 207 (491)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00019 Score=68.08 Aligned_cols=125 Identities=9% Similarity=-0.026 Sum_probs=93.4
Q ss_pred HHhcCChhHHHHHHHHHHhcC---C-C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHH
Q 041882 86 LARARDFDAVETVLGYIQDFN---I-R---CKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNS 151 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~---~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 151 (491)
+...|++++|..+++...+.. . + ....+++.|...|...|++++|+.++++.... | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 557899999999998876531 1 1 12467899999999999999999998886542 2 2223567999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHC-----CC-CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKM-----GF-RPN-LISFNVMIKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
|...|...|++++|+.++++..+. |. .|+ ..+.+.+-.++...+.+++|+.+|..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543 32 122 234456667777888888898888887653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=3.7e-05 Score=56.61 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 22333344444444444444444444444443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00027 Score=52.41 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+...|++..+..+. +...+..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443322 44455555555555555555555555554432 23344444555555555555555555555544
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00048 Score=50.99 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 59 EALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
.|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555565555543 3445556666666666666666666666666554 3445556666666666666666666666554
Q ss_pred h
Q 041882 139 S 139 (491)
Q Consensus 139 ~ 139 (491)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00057 Score=47.82 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|+..|++...... .+..++..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344555555556666666666666555543 33455555555556666666666666655554331 1344444444443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=0.00021 Score=55.56 Aligned_cols=89 Identities=10% Similarity=-0.026 Sum_probs=63.2
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChh----------HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFD----------AVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
...+.+.+++|++.++...+.. +.+...|..+..++...++++ +|+..|++.++.+ +.+..+|..+..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 4667788888999998888765 667788888888888777654 7777777777765 456666777777
Q ss_pred HHHhcC-----------CHHHHHHHHHHhhhC
Q 041882 120 HYGKAH-----------LVDKAIEVFNRMTSF 140 (491)
Q Consensus 120 ~~~~~~-----------~~~~a~~~~~~~~~~ 140 (491)
+|...| ++++|++.|++..+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 776553 566666666666554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=0.00027 Score=55.01 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=75.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV----------DKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
.+.+.+++|.+.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.+.. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567888999999888887 67888888888888887765 5888888888887633 677888888888
Q ss_pred HhCC-----------ChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 157 VDND-----------RVDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 157 ~~~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
...| ++++|++.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888887775 566655544443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.41 E-value=0.0022 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444455555555555555544432 22344444444555555555555555555544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.0011 Score=47.67 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
.+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333344444444444444333321 112233333333333444444444433333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.002 Score=46.16 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=32.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
+...+..+...+...|++++|.+.|+...+.+ +.+...+..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555544 3344455555555555555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.019 Score=51.40 Aligned_cols=142 Identities=9% Similarity=-0.037 Sum_probs=88.7
Q ss_pred CCChhcHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHHHHHHHh
Q 041882 283 KPQLVNFGVLMSDLGK--RG---KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK---ED--RAAEA---YKVLTEMQI 349 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~~ 349 (491)
+.+...|...+++... .+ +..+|..+|++..+..+. ....|..+..+|.. .+ ..... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4555666666554432 22 246777777777776443 34444444433321 11 11111 111221111
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041882 350 -GGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKA 428 (491)
Q Consensus 350 -~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (491)
...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1225677788877777777799999999999999875 77777777888888999999999999988875 566665
Q ss_pred H
Q 041882 429 W 429 (491)
Q Consensus 429 ~ 429 (491)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.04 Score=49.36 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET 393 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (491)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 45555555555555566666666666665543 55555555555555566666666666665553 244444
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0041 Score=57.96 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHhHHHHH
Q 041882 333 KEDRAAEAYKVLTEMQIG---GCKP---N-AATYRMMVDGFLRVEDFEGSLKVLNAMLTS-----RH-CP-RLETFSCLL 398 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~---~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 398 (491)
..|++++|+.++++.++. -+.| + ..+++.+..+|...|++++|+.++++.++- |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876552 1122 2 356788888888999999999888887752 21 13 245788889
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 041882 399 VGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0068 Score=56.56 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=66.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHh
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGG---CKPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS-----RH-CP-RLET 393 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 393 (491)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++++.- |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888877531 1222 346778888888889999998888877652 21 12 2456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 394 FSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888999999999999999888764
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0061 Score=43.31 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=25.6
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDF 105 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 105 (491)
.+...|++++|+..|+...+.. +.+.. .+..+...+...|++++|.+.|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555444432 22333 4444444444555555555555544444
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.036 Score=38.82 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=40.0
Q ss_pred CCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 73 KHSYPSYASLIYKLARARD---FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
+.++..+..+..++...++ .++|..+++...+.. +.++.....+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455555555555544333 466666666666655 4555666666666666666666666666666543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.056 Score=55.36 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=78.3
Q ss_pred HhcCCHHHHHH-HHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 122 GKAHLVDKAIE-VFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 122 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
...+++++|.+ ++..+. +......++..+.+.|.++.|+++.++ . ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 34566666655 332211 122235566666666776666655421 1 1112334566777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7765432 2566777777777777777777777777643 233444444455555554444433333
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 281 GCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
| -++....+|.+.|++++|.+++.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH
Confidence 2 12223333444455554444443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.45 E-value=0.0086 Score=55.84 Aligned_cols=63 Identities=5% Similarity=-0.019 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHC-----C-CCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKM-----G-FRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45556666666666666666666554332 1 1122 23455566666666666666666665543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.029 Score=39.59 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKET-LFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
....+.+.|++++|.+.++.+.+.. +.+.. .+..+..++...|++++|+..|++....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456677888888888888888765 55666 78888888888888888888888887754
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.36 E-value=0.018 Score=53.72 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-----C-CCCC-HHhHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-----G-FRPN-LISFN 185 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~ 185 (491)
.+...|++++|+.++++..+. | .+....+++.+..+|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556777777776665432 1 1112456677777777777777777777665432 2 1122 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.24 E-value=0.1 Score=53.37 Aligned_cols=153 Identities=15% Similarity=0.105 Sum_probs=86.7
Q ss_pred HhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHH
Q 041882 227 CRTGEMGKAKG-LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEA 305 (491)
Q Consensus 227 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 305 (491)
...+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. +. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 45666776655 43111 1122235566666677777777655421 11 112334567788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7775432 2667888888888888888888888877653 333444444566666655555555544
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
|. ++....+|.+.|++++|.+++.++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 31 2333344555666666666655443
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.048 Score=41.88 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHcCCCHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTSRHCP--RLETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
..+.+-|.+....+ .++..+...+..++++.+ ++++++.+++...+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444444444 355555555666666655 4456666666666643 12 24444555566666677777777
Q ss_pred HHHHHHH
Q 041882 413 VLEEMEK 419 (491)
Q Consensus 413 ~~~~~~~ 419 (491)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666665
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.02 E-value=0.084 Score=36.91 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 108 RCKETLFISLIQHYGKAHL---VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
+.++..+..+..++...++ .++|..+|++....+.. ++.+...+...+...|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666544433 56777777776665532 5666666667777777777777777776665
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.39 Score=37.84 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777766654 1566777777777777777777777766442 23333445556666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555554443 1344444555667777777766443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.93 E-value=0.085 Score=37.80 Aligned_cols=66 Identities=12% Similarity=-0.047 Sum_probs=38.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFN------IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+...+..+...+.+.+++..|...++...+.. ......++..+..++.+.|+++.|+..+++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666777777777666655431 1223455566666666666666666666665543
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.84 E-value=0.37 Score=35.74 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=68.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+. .|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45566666666655543 13444555554444444444444444443321 121 123344333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
+-.+-. +.......+..+...|.-++-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 334455555556666666666666666432 2355555555666666666666666666666666554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.55 Score=37.02 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444333 13444555555555555555555555444
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.69 E-value=0.11 Score=39.88 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARAR---DFDAVETVLGYIQDFNIR-CKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
..+.+-|+...+.+ +++..+...+..++++.+ +++++..+++.+.+.+.+ .+...+-.+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33344444333333 234444444444444444 333444444444443201 1233333344444444444444444
Q ss_pred HHHhhh
Q 041882 134 FNRMTS 139 (491)
Q Consensus 134 ~~~~~~ 139 (491)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.53 E-value=0.14 Score=43.94 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC-CCH
Q 041882 337 AAEAYKVLTEMQIGGCKPN---AATYRMMVDGFLRV-----EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKG-GKV 407 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 407 (491)
...|..++++..+. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34556666666553 455 34666666666663 77888888888877743211366667777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 041882 408 DDACFVLEEMEKRKMR--FDLKAWEGLVT 434 (491)
Q Consensus 408 ~~a~~~~~~~~~~~~~--~~~~~~~~ll~ 434 (491)
+++.+.+++....... |+....+.+-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 8888888887776655 55555554443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.39 E-value=0.19 Score=35.90 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKG------TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
-+..+...+.+.|+++.|..+|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444444455555555555554444320 1112334444444455555555555555444443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.37 E-value=0.57 Score=34.74 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
+...+...+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445666778888899999999999886553 4678888889999999999999999999999998874
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.17 E-value=0.15 Score=38.66 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 041882 320 DVVTYNILINYLCKEDRA------AEAYKVLTEMQIGGCKPNAA----TYRMMVD---GFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~---~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+-- .+...+|.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666655666 6666677766553 444321 1111111 1234489999999999997652
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041882 387 HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
-.- ..+|......-.++|+...|.+++.+....+.. +...+++.++- .+.|+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n-l~~~~ 142 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN-LNLQK 142 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH-HHTTC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh-hhcCC
Confidence 223 778888888889999999999999999987755 45566666664 34443
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=2.5 Score=39.45 Aligned_cols=201 Identities=15% Similarity=0.205 Sum_probs=108.2
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhh-----CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQ-----MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFIS 116 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (491)
....+-+..+.+ |+++.|++.+-.+.. .+..-.......++..|...++++...+.+..+.+.... .......
T Consensus 18 ~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~ 95 (445)
T 4b4t_P 18 KEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQY 95 (445)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHH
Confidence 333445555654 788999887755442 233445667888999999999999998888776654322 2333334
Q ss_pred HHHHH----HhcCCHH--HHHHHHHHhhhC--C-CCc---CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC--
Q 041882 117 LIQHY----GKAHLVD--KAIEVFNRMTSF--D-CVR---TLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPN-- 180 (491)
Q Consensus 117 l~~~~----~~~~~~~--~a~~~~~~~~~~--~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~-- 180 (491)
+++.+ ......+ .-+.+.+.+... | +.. .......|...+...|++.+|.+++..+... |....
T Consensus 96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 44333 2222222 122222222111 1 111 1223456677777788888888888777543 21111
Q ss_pred -HHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 181 -LISFNVMIKGRLKKGEWEEASRVFDEMLE----REVPPT--VVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 181 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
...+...++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|...|.++..
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23455666777777888877777776532 111111 23445556666667777777766666543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.74 E-value=0.22 Score=42.82 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC-CChhhHH
Q 041882 94 AVETVLGYIQDFNIR-CKETLFISLIQHYGK-----AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN-DRVDDAK 166 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~ 166 (491)
.|..++++..+.... .+...|..+...|.+ .|+.++|.+.|++....+..-+..++......++.. |+.+++.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 344444554444310 023455555555555 255555555555555543222344555555555553 5555555
Q ss_pred HHHHHHHHCC
Q 041882 167 RMFDDADKMG 176 (491)
Q Consensus 167 ~~~~~~~~~~ 176 (491)
+.+++.....
T Consensus 261 ~~L~kAL~a~ 270 (301)
T 3u64_A 261 EALDRALAID 270 (301)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHcCC
Confidence 5555555543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.35 E-value=0.38 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHhHHHHHHHHHcCCCHHHHH
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG---SLKVLNAMLTSRHCP--RLETFSCLLVGLLKGGKVDDAC 411 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 411 (491)
...+.+-|.+....| .++..+-..+..++++..+... ++.+++.+...+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444333 3555555555666666555444 666666665543 12 2334444556666777777777
Q ss_pred HHHHHHHHC
Q 041882 412 FVLEEMEKR 420 (491)
Q Consensus 412 ~~~~~~~~~ 420 (491)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.73 E-value=0.54 Score=34.64 Aligned_cols=80 Identities=6% Similarity=-0.067 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCC-cCHHHHHHHHHHHHhCCChhhHHHHH
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK---AIEVFNRMTSFDCV-RTLQSFNSLLDILVDNDRVDDAKRMF 169 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 169 (491)
.+.+-|......+ .++..+-..+..++++...... ++.+++++...+.+ ......-.|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333343333333 2444444444444444443333 44555554443210 12222333344444445555555555
Q ss_pred HHHHH
Q 041882 170 DDADK 174 (491)
Q Consensus 170 ~~~~~ 174 (491)
+.+.+
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.69 E-value=1.7 Score=32.97 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
+++++|.++|+.+...+-+ =...|-...+.-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 5666666666666554222 25555555555556666666666666666554
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.54 E-value=0.00037 Score=63.80 Aligned_cols=265 Identities=13% Similarity=0.077 Sum_probs=151.9
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
.+.-|..+.++.+..++..+|++.|- + ..|+..|..++.+..+.|.+++-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 33446778888888888888877663 2 2344568888888888888888888877666553 23344457788
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.++..+-++++ ..||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 888888766543332 13566666777777888888877776665432 23334444455555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
|.+.-++ .-++.||..+-.+|...+++.-|.-.--.++-..- ....++..|...|.+++.+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 4432211 12566777777777777776665544433332211 122355556666777776666666553
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYK------PDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
.. ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|..++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 32 34455566665555554 234433333322111 111 02334666666666666666543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.44 Score=47.42 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHC------CCCC-CH-
Q 041882 112 TLFISLIQHYGKAHL-VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKM------GFRP-NL- 181 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~p-~~- 181 (491)
.....++..+...++ .+.|..+|+++...+...+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344556666666666 57788999988775422222222333333333322 22455555444321 1111 11
Q ss_pred ---------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 182 ---------ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 182 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
...+.-.+.+...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223445677899999999999988763 3367889999999999999999999888873
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.30 E-value=1.8e-05 Score=72.20 Aligned_cols=326 Identities=9% Similarity=0.025 Sum_probs=196.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
+..|..|..+..+.+...+|.+.| .+ ..|+..|..++....+.|.+++-+.++.-..+.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 346788888877777777666543 12 2355667777888888888888777776555432 344555677888
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 888887665444432 3666666777777777888777776664332 344455566677777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.+.-++. -++.||..+-.+|...+.+.-|.-.--.++-. + .....++..|...|-+++.+.+++.-...
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 6543332 26678999999999999988876654444422 1 22335677788999999999999887743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCC-
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT------SRHC- 388 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~- 388 (491)
-.....+|+.|.-.|++- ++++..+.++..-. +.| .-.++++|.+..-|.++.-++..-.+ .-+.
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h 330 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 330 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSC
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhC
Confidence 234778888888888874 45555444443211 111 11357778877777777766554322 1111
Q ss_pred -CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHH
Q 041882 389 -PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVE 448 (491)
Q Consensus 389 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 448 (491)
++..--..+-+...+.++.+---+.+.--.+. .+...+-|+.++...-+....++.
T Consensus 331 ~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~ 387 (624)
T 3lvg_A 331 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNY 387 (624)
T ss_dssp HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHH
T ss_pred ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHH
Confidence 12222223334455666666544444443332 222345555544444444434333
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.27 E-value=2.5 Score=42.16 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHc------CCCCCh-----
Q 041882 220 NSLIGFLCRTGE-MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG-EYNEAKKMMFDMAYR------GCKPQL----- 286 (491)
Q Consensus 220 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~----- 286 (491)
..++..+...+. ++.|..+++++.+.....+......++..+...+ +--+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 4778888888877633222222223333333332 222344444443321 111111
Q ss_pred ------hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 287 ------VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 287 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.....-.+.+...|+++.|..+-++.....+. +..+|..|..+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244566789999999999988886443 6889999999999999999999888776
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.97 E-value=11 Score=40.18 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
...++..+...+.++.+.++...+.. ++..--.+..++...|++++|.+.|++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44566777788888888776655432 44444567778889999999999998763
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.91 E-value=0.82 Score=41.87 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME-----KRKMRFDLKAWEGLV 433 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ll 433 (491)
..++.++...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+++. +.|+.|.+.+-...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445667777888888888888877653 3467788888888888888888888888765 348888876654443
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.50 E-value=2 Score=29.91 Aligned_cols=63 Identities=2% Similarity=0.042 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.-+.++-++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .....+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 34455555555555556666666666666666666666666666554321 1123345555444
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.27 E-value=2.7 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555555666666666666666666666666666655544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.69 E-value=1.9 Score=39.46 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHhHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK-----MGFRPNLISFNVM 187 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 187 (491)
+...++..+...|++++|+..+..+.... +.+...|..+|.++...|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556677778888888888888877654 33777888888888888888888888887644 3888887665433
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.62 E-value=17 Score=37.28 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=129.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------CCChhhHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLI--SFNVMIKGRLKKGEWEEASRVFDEMLEREV-------PPTVVTYNSLI 223 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll 223 (491)
--+....|+.++++.++......+-..+.. .-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 444566777788877777655421011222 222333344555555566766666554311 01111222233
Q ss_pred HHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH--HHHh
Q 041882 224 GFLCRTGE-MGKAKGLFEDMIKKGTYPNAVTYA--LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS--DLGK 298 (491)
Q Consensus 224 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~ 298 (491)
-+.+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 33333332 2345555555554311 1111122 22333456677777777777666532 2223333333 3346
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVT-YN---ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.|+.+.+..+.+.+... .++.. |. ++..+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 YGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred CCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 67777777777777664 13222 22 33445667778777777887777531 2222222233334555677666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKV-DDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 419 (491)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777776666543 34444444444455545443 567777777764
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=12 Score=34.82 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=88.1
Q ss_pred CChhhHHHHHHHHHHC-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHH----Hhc
Q 041882 160 DRVDDAKRMFDDADKM-----GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFL----CRT 229 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~~ 229 (491)
|+++.|++.+..+.+. ...........++..|...++++...+.+..+... |.. ......++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 6677777776665532 22334555667777888888888777766655443 222 12222233222 122
Q ss_pred CChhHHH--HHHHHHHH--cC-CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-----hhcHHHHHHHH
Q 041882 230 GEMGKAK--GLFEDMIK--KG-TYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-----LVNFGVLMSDL 296 (491)
Q Consensus 230 ~~~~~a~--~~~~~~~~--~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~ 296 (491)
...+.-. .+.+.... .| +... ......+...+...|++.+|.+++..+...-...+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111100 01 1111 11223455556666666666666666553211111 22344445556
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKR----QYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
...+++..|..++.++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666655321 11111 1234445555555666666665555543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.57 E-value=4.7 Score=29.81 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
.-+..+-++.+...++.|++....+.+.+|.+.+|+..|.++|+-++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455555666666667777777777777777777777777777666542 223344555543
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.28 E-value=4.2 Score=30.06 Aligned_cols=62 Identities=2% Similarity=0.055 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
-+.++-++.+...+..|++.+..+.+++|.+.+++..|.++|+-++..- .+....|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 3455555555555556666666666666666666666666666654331 1223345555544
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.11 E-value=29 Score=35.56 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
|..++.+..+.++.+.+.++|.++..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777888888888888888764
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.77 E-value=3.8 Score=31.74 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=45.4
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCC-CCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSY-------PSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
..-++.+...+.++.|..+.+.+.... ..++. .++..+..++...|+|..|...|+...+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 567788899999999999988765321 22331 2567777889999999999999998654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.42 E-value=13 Score=39.44 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=85.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------------------c
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK--------------------K 245 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------~ 245 (491)
.++..+...+.++.+.++...... +...--.+..+|...|++++|.+.|++... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556666666666554433222 333444556667777777777777755311 0
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 246 --GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL----VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 246 --~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
....-..-|..++..+.+.+.++.+.++-...++.....+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00112345666777777777777777776665554322221 2466677777788888888777777665433
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 041882 320 DVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~ 339 (491)
-......++...+..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34556666666665555443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.21 E-value=8.5 Score=28.51 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 353 KPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.|+..+--.+..++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+. .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 5666665556666666554 3456677777766541123445556667777788888888877777753 554
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.85 E-value=27 Score=34.01 Aligned_cols=78 Identities=6% Similarity=-0.025 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.-..-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334445555666666655554332 12355555556666666666666665555554443 223344555555555
Q ss_pred hcCC
Q 041882 193 KKGE 196 (491)
Q Consensus 193 ~~~~ 196 (491)
+.|.
T Consensus 148 ~~g~ 151 (618)
T 1qsa_A 148 ASGK 151 (618)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 4443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.67 E-value=6.1 Score=30.61 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPD-------VVTYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAAT 358 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 358 (491)
+..-+..+...+.++.|+-+.+.+... +..|+ ..++..+.+++...+++.+|...|++.+... +.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334455556666666666665554332 11122 1234455566666666666666666653321 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
...+.. . ..... ......+...---+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~~---~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGN---S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc---c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111100 0 00000 00112233444457778888888888888888654
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.53 E-value=12 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 353 KPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.|+..+--....++++..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+. +|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4555555555566665544 3456666666666432223344455666777777777777777777763 454
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.11 E-value=23 Score=30.92 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=80.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 117 LIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKR----MFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-+.+.+.+++......++..+.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445666777777766544321 2223344443333 2334444566666666666665554
Q ss_pred hcCChH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 041882 193 KKGEWE-EASRVFDEML----ERE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK- 264 (491)
Q Consensus 193 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 264 (491)
....-+ .-.++++.+. +.| ..-++..+..+...|.+.|++.+|...|-.- -.-+...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhc
Confidence 432111 1122333332 121 2236677778888888888888877766421 111344454444433333
Q ss_pred --CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 265 --GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 265 --~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
|...++ +...-.+++ -|...++...|..+++...
T Consensus 180 ~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332222 111122222 3445677777777777654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.06 E-value=12 Score=27.69 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=29.1
Q ss_pred ChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 215 TVVTYNSLIGFLCRTGEM---GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+..+--....++.++.+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444444444433 234445555444332112233333444455555555555555555543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.49 E-value=5.2 Score=33.88 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=40.8
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN 106 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 106 (491)
+..+.+.|++++|+.....-++.. +-|...-..+++.+|-.|+|+.|.+-++...+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445667777777777777766654 5566666777777777777777777777766654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.49 E-value=16 Score=33.77 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555443 11222334444555555555555555555544
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.34 E-value=16 Score=29.31 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 369 VEDFEGSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.++...+..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444678888888888876543 456777888888888888888888888888877774
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.93 E-value=15 Score=33.98 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=29.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQ--YKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
+...+...|.+.|+++.|.+.+.++.... ...-...+-.+++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555555555555555554431 1112334444555555555555555555554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.89 E-value=7.5 Score=32.92 Aligned_cols=116 Identities=11% Similarity=-0.015 Sum_probs=70.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cCHHHHHHHHHHHHhCCC
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~ 161 (491)
..+.+.|+++++++....-.+.. |.|...-..++..+|-.|++++|..-++...+.+.. +....|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567888888888888877776 778888888889999999999998888877665321 1223444444431
Q ss_pred hhhHHHHHHHHHHCCCCC-----CHHhHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 041882 162 VDDAKRMFDDADKMGFRP-----NLISFNVMIKGRL--KKGEWEEASRVFDEMLER 210 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p-----~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 210 (491)
..=.++...+-.| ...-...++.+.. ..|+.+.|..+-..+.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111222222111 1222334444433 458888888877777553
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.27 E-value=37 Score=30.83 Aligned_cols=294 Identities=10% Similarity=0.042 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCcCHHHHHHHHHHHHhC-CChhhHHHHHHHHHHCCCCCCHHhH---
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSF----DCVRTLQSFNSLLDILVDN-DRVDDAKRMFDDADKMGFRPNLISF--- 184 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~--- 184 (491)
....|...|.+.|+.++..+++...... .-.........++..+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445566666666666666666554332 0001223344555555543 2233333444333322100 11222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHH
Q 041882 185 ---NVMIKGRLKKGEWEEASRVFDEMLEREVPPT-----VVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTY 254 (491)
Q Consensus 185 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 254 (491)
..+...|...|++.+|.+++..+.+.-...| ...+-.-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2466777788888888777777765311111 233555566777888888888888776543 222344332
Q ss_pred HHH----HHHHH-hcCCHhHHHHHHHHHHHcCCCCC------hhcHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCCHH
Q 041882 255 ALL----MEGLC-FKGEYNEAKKMMFDMAYRGCKPQ------LVNFGVLMSDLGKRGKIEEAKSLLS-EMKKRQYKPDVV 322 (491)
Q Consensus 255 ~~l----l~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 322 (491)
..+ ...+. ..++|..|...|-+..+.=-... ...|..+ .+.. .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCCccHH
Confidence 221 12234 67888888777766542100111 1122222 2222 233223223222 111111234444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.+..++.+| ..+++.+...++..... .+..|......+ ..+.+ .--...+.++.+ +-...++..+...+.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i~~---pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD----TMLEQNLCRIIE---PYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH----HHHHHHHHHHHT---TCSEEEHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH----HHHHHHHHHHhH---hhceeeHHHHHHHHC
Confidence 555666654 34677766666665432 234444321111 00000 000111122222 123445555555553
Q ss_pred cCCCHHHHHHHHHHHHHCC
Q 041882 403 KGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~ 421 (491)
- ..+++...+-+|...|
T Consensus 328 l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp C--CHHHHHHHHHHHHHTT
T ss_pred c--CHHHHHHHHHHHHHCC
Confidence 3 5677777777777654
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.79 E-value=36 Score=29.95 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHH----HHHHHHCCCCCCHHhHHHHHHHH
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRM----FDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
.+..-|.+.+++++|++++..-. ..+.+.|+...+-++ ++-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34445677788888887764432 122333444443333 23444456666766666666665
Q ss_pred HhcCChH-HHHHHHHHHHh----CC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 192 LKKGEWE-EASRVFDEMLE----RE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 192 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
.....-+ .=.++.+.+.. .| ..-|+.....+...|.+.+++.+|...|- .|..+....|..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 5544311 11222222221 12 23356677777788888888888777662 23333335665555444333
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
+...+ .+...-.+++ -|...++...|..+++...+
T Consensus 181 ~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 32111 1222223333 34456677777776665543
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.46 E-value=22 Score=26.72 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 318 KPDVVTYNILINYLCKEDRA---AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 318 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.|+..+--.+..++.+..+. .+++.+++++...+-.-.....-.+.-++.+.|+++.|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45666666666677766543 457777777766431112334445556788888888888888888884
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.91 E-value=40 Score=29.42 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
++.....+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5555566666666666666655544
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.41 E-value=19 Score=25.00 Aligned_cols=78 Identities=8% Similarity=0.042 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFD 170 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 170 (491)
.-++|..|-+++...+. ...+--.-+..+...|++++|..+.+... .||...|-.|... +.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 44555555555555431 11111122233455666666666555444 3555555444332 4455555555555
Q ss_pred HHHHCC
Q 041882 171 DADKMG 176 (491)
Q Consensus 171 ~~~~~~ 176 (491)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.79 E-value=20 Score=24.95 Aligned_cols=78 Identities=6% Similarity=0.040 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFD 170 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 170 (491)
.-++|..|-+++...+. ...+--.-+..+...|++++|..+.+... .||...|-.|... +.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 44555555555555431 11111122233445566666666555544 2555555444332 3455555555554
Q ss_pred HHHHCC
Q 041882 171 DADKMG 176 (491)
Q Consensus 171 ~~~~~~ 176 (491)
.+...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.24 E-value=34 Score=26.08 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 041882 374 GSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL 426 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (491)
.+.++|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3778888888776543 3566777778888888888888888888877777743
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.22 E-value=52 Score=26.41 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 041882 127 VDKAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP 179 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 179 (491)
...+.++|.-|...|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444445555443332211 23344444555555555555555555555444333
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.96 E-value=80 Score=28.14 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 041882 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR--AAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 290 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 353 (491)
..++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 44555566666666666666666432111 12233333334333222 23455555555555433
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.76 E-value=31 Score=29.06 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.6
Q ss_pred HHhcCChhHHH
Q 041882 86 LARARDFDAVE 96 (491)
Q Consensus 86 ~~~~~~~~~a~ 96 (491)
.++.|+.+...
T Consensus 12 A~~~g~~~~v~ 22 (285)
T 1wdy_A 12 AVQNEDVDLVQ 22 (285)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 34444444333
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.36 E-value=50 Score=25.53 Aligned_cols=54 Identities=7% Similarity=-0.065 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 374 GSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
.+.++|..|..+|+-. -...|......+...|++.+|.++|+.-++.+-+|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3667888888886654 45677888888888999999999999988888777543
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.23 E-value=37 Score=23.62 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
...++|..+-+-+...+. ....--+-+..+...|++++|..+.+... .||...|-+|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566555555554432 11111222334455566666655443322 445555544433 3455555555555
Q ss_pred HHHHHc
Q 041882 240 EDMIKK 245 (491)
Q Consensus 240 ~~~~~~ 245 (491)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555444
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.07 E-value=39 Score=23.53 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=37.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
...++|..+-+-+...+. ....--+-+..+...|++++|..+.+... .||...|-+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566665555555432 11111222334555566666665554332 455555554433 2445555555555
Q ss_pred HHHHHc
Q 041882 240 EDMIKK 245 (491)
Q Consensus 240 ~~~~~~ 245 (491)
.++...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 555444
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.81 E-value=96 Score=27.66 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQ 103 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~ 103 (491)
..++.-|...++.+++...++.+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455566666677777777666654
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.37 E-value=43 Score=28.18 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 041882 117 LIQHYGKAHLVDKAIEVFNR 136 (491)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~ 136 (491)
.+...++.|+.+....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445666776665555544
No 278
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=57.85 E-value=1.7e+02 Score=30.05 Aligned_cols=159 Identities=9% Similarity=-0.013 Sum_probs=90.3
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 291 VLMSDLGKRGK---IEEAKSLLSEMKKRQ----YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 291 ~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
.++...|..|. .+.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 45666677776 456777777766532 344432 33334445667777767777777663 3344445677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhc
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKG-GKVDDACFVLEEMEK---RKMRFDLKAWEGLVTDACIG 439 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~ 439 (491)
.+++...+.+...++++..+............ ++.+.... -..+.|.+.+..=-+ ..+......+..++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 88888888888888888776543222223323 33333332 223444454443211 11222334567788776666
Q ss_pred CCCcchhHHHHHHhhh
Q 041882 440 DGNAGGLVEIRDMRDY 455 (491)
Q Consensus 440 ~~~~~~~~~~~~m~~~ 455 (491)
-..++.+++++...+.
T Consensus 845 ~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 845 FSSEFELQQLEQFKKN 860 (909)
T ss_dssp CCSHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhh
Confidence 6667777777776654
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.11 E-value=73 Score=25.41 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 041882 250 NAVTYALLMEGLCFKGE 266 (491)
Q Consensus 250 ~~~~~~~ll~~~~~~~~ 266 (491)
+..+-...+.++...++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.34 E-value=1.3e+02 Score=27.96 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=54.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhH
Q 041882 105 FNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 184 (491)
.|++--...|..-.+.+...|++++|-++--.... |+-.+..+.+.+-.+=...|+..-.+.+|..+.+.| +.+..--
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 34444445555555566666777666666555443 334466666555554445566666667777666665 3344333
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 041882 185 NVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~ 204 (491)
--+++.....|+.+..++++
T Consensus 433 lEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHH
Confidence 44555555566655555444
No 281
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.81 E-value=1.1e+02 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH----HHHHHHHHcCCCCCHHHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK----GLFEDMIKKGTYPNAVTYALLME 259 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~ll~ 259 (491)
|.++..-|.+.+++++|.+++..-. ..+.+.|+..-|- -+++-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444445666777777776653321 1223334443333 33344555667777766666666
Q ss_pred HHHhcC
Q 041882 260 GLCFKG 265 (491)
Q Consensus 260 ~~~~~~ 265 (491)
.+....
T Consensus 103 L~~~~~ 108 (336)
T 3lpz_A 103 CLRLFQ 108 (336)
T ss_dssp HHTTSC
T ss_pred HHHhCC
Confidence 665444
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.98 E-value=1.2e+02 Score=27.41 Aligned_cols=132 Identities=8% Similarity=0.021 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhhH-
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRP---NLISFNVMIKGRLKKG-EWEEASRVFDEMLEREVPPTVVTY- 219 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 219 (491)
..+...|...|.+.|+.++..+++...... +.-| .......++..+.... ..+.-.++..+..+.... ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345666777777778777777777765432 1111 1223344555554432 222223333332221000 11222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 220 -----NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-----AVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 220 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
.-++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++..+...+....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1355566666666666666665554311111 1223333444555555555555555443
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.37 E-value=93 Score=25.77 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC--CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDDADKM--GFRP----NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 55666667777777666655432 1111 011111222222222222233333333322 22344445555666
Q ss_pred HhcCChhHHHHHHHHHH
Q 041882 227 CRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 227 ~~~~~~~~a~~~~~~~~ 243 (491)
.+.|+.++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 66666666666665443
No 284
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.35 E-value=1.1e+02 Score=26.52 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.2
Q ss_pred HhcCChhHHHHH
Q 041882 87 ARARDFDAVETV 98 (491)
Q Consensus 87 ~~~~~~~~a~~~ 98 (491)
++.|+.+.+..+
T Consensus 33 v~~g~~~~V~~L 44 (337)
T 4g8k_A 33 VQNEDVDLVQQL 44 (337)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 344554433333
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.64 E-value=52 Score=26.72 Aligned_cols=9 Identities=0% Similarity=-0.116 Sum_probs=3.6
Q ss_pred hhcCChHHH
Q 041882 52 KEIRDPDEA 60 (491)
Q Consensus 52 ~~~~~~~~A 60 (491)
.+.|+.+..
T Consensus 17 ~~~g~~~~~ 25 (240)
T 3eu9_A 17 TQYGIYERC 25 (240)
T ss_dssp HHTTCHHHH
T ss_pred HHcCChHHH
Confidence 333444333
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.09 E-value=1.1e+02 Score=26.67 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=25.4
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCH----HhHHHHHHHHHhcCChhHHHHH
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSY----PSYASLIYKLARARDFDAVETV 98 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~ 98 (491)
.+....+.|+.+.+..+++. |..++. .-++. +...+..|+.+-+.-+
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~Tp-Lh~A~~~g~~~iv~~L 78 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTP-LHNAVQMSREDIVELL 78 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCH-HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCH-HHHHHHcCCHHHHHHH
Confidence 45556777998877777654 433321 12233 3444567776544333
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.01 E-value=52 Score=26.93 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 373 EGSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
+.+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46667888888876653 456677788888888888888888888887777773
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.93 E-value=82 Score=23.60 Aligned_cols=59 Identities=5% Similarity=0.063 Sum_probs=33.0
Q ss_pred hhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 67 HHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 67 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+.+.|.+.+. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4456666655 3334455555555556677777777666544555555555555555543
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.82 E-value=93 Score=23.63 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCC
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE--YNEAKKMMFDMAYRGC 282 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 282 (491)
.+.++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666777777776666632111 122333344444444322 3345555555555543
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.38 E-value=93 Score=23.49 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=34.8
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
.+.+.|+.+ +..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345566653 334445556666666666777777777766655566665555666655553
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.78 E-value=1.3e+02 Score=24.92 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=12.3
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~ 313 (491)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455555666666666665544
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.35 E-value=66 Score=27.38 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=23.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLEREVPP-TVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
.+...+..|+.+- ++.+.+.|..+ +...-...+...+..|+.+-+.-+++.
T Consensus 132 ~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 132 SFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 3444455565443 33333444322 111233344444566666665555554
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.78 E-value=93 Score=23.27 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
.+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455655433 333445555555555666777777766655555555555555555554
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.92 E-value=1e+02 Score=23.37 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=36.8
Q ss_pred HHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH
Q 041882 130 AIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL 181 (491)
Q Consensus 130 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 181 (491)
+.++|.-|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 667777776654432 4556777777888888888888888888777656543
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.40 E-value=1.3e+02 Score=24.34 Aligned_cols=8 Identities=0% Similarity=-0.342 Sum_probs=3.2
Q ss_pred hcCChHHH
Q 041882 193 KKGEWEEA 200 (491)
Q Consensus 193 ~~~~~~~a 200 (491)
..|+.+-+
T Consensus 88 ~~~~~~~~ 95 (241)
T 1k1a_A 88 EHRSPTCL 95 (241)
T ss_dssp HTTCHHHH
T ss_pred HcCCHHHH
Confidence 34444333
No 296
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.94 E-value=78 Score=23.72 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=32.8
Q ss_pred hhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 67 HHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 67 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34566666553 233444555555 55677777777766555555555555555555553
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.92 E-value=1.2e+02 Score=23.96 Aligned_cols=154 Identities=14% Similarity=0.007 Sum_probs=76.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
++...-...+..+.+.++.+....+.+ +.. .++..+-...+.++.+.++.+. ...+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 455555666666666666433333333 332 2456666666666666665433 333333332 24555656666
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.++...++.+ +...+..+.. .++...-...+.++...++.+ +...+..+... ++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-h
Confidence 6666666543 3333333433 345555555566666665543 33333333322 355555555555555554 3
Q ss_pred HHHHHHHHHHH
Q 041882 234 KAKGLFEDMIK 244 (491)
Q Consensus 234 ~a~~~~~~~~~ 244 (491)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 298
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.48 E-value=87 Score=23.10 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=31.7
Q ss_pred hhhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 67 HHQMGSKHSYPSYASLIYKLARAR-DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 67 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34556666552 334445555544 556677777777666545555555445555555443
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.15 E-value=99 Score=22.63 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCC
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE--YNEAKKMMFDMAYRGC 282 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 282 (491)
..++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4456666666666666666666532111 122333334444444322 3445555555555543
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.66 E-value=96 Score=24.21 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.3
Q ss_pred hcCCHHHHHHHH
Q 041882 123 KAHLVDKAIEVF 134 (491)
Q Consensus 123 ~~~~~~~a~~~~ 134 (491)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444444
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.45 E-value=1.5e+02 Score=27.98 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCH--HhHH-HHHHHHHhcCChHHHHHHHHHHHhC
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPNL--ISFN-VMIKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
....+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+.+.+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356789999999999999999999988742100 1111 1221 2345566788999999998887765
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.09 E-value=1e+02 Score=23.72 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHHH-hhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC
Q 041882 58 DEALSLFHR-HHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDF--NIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 58 ~~A~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+.+++-++. +.+.|.+.+. --..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334443333 3345666554 3344455555555666666666666655 444455444444555555543
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.43 E-value=1.2e+02 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~ 312 (491)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.04 E-value=2.8e+02 Score=26.95 Aligned_cols=313 Identities=12% Similarity=-0.005 Sum_probs=156.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
..-+..+.+.+++......+.. .+.+...-.....+....|+..+|.....++=..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4445667777777766654322 24566666677777888898877777766664444 23455777788777766
Q ss_pred CChhh--HHHHHHHHHHCC-----------CCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh---hHHHH
Q 041882 160 DRVDD--AKRMFDDADKMG-----------FRPNLISF-NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV---TYNSL 222 (491)
Q Consensus 160 ~~~~~--a~~~~~~~~~~~-----------~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 222 (491)
|.... ...-++.+...| +.++.... ..++... .+...+...... +.++.. .+...
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVA 221 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHH
Confidence 65433 333333333332 11111111 1111111 111222211111 111211 11112
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALL----MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
+.-+.+ .+.+.|...+....+.... +......+ ...+...+...++...+...... ..+.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 222223 3678888888777654322 33222222 22223344244555555554433 2333333344444556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCC-------C----
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG------------GCKP-------N---- 355 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~---- 355 (491)
.|+++.|...|+.|...... ...-.--+..++...|+.++|..+|..+... |.++ +
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 78888888888777653221 2333344555667778888888877776431 2110 0
Q ss_pred -HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 356 -AAT---YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 356 -~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
... -..-+..+...|....|...|..+... . +......+.......|.++.++...
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 112234566678888888777777654 2 2232334444445566666655443
No 305
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.59 E-value=94 Score=23.46 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=32.5
Q ss_pred hhhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 67 HHQMGSKHSYPSYASLIYKLARAR-DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 67 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44556666553 233444444444 4556777777776665455555555555555555533
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.55 E-value=1.5e+02 Score=23.70 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=7.6
Q ss_pred CChHHHHHHHHHHHhCC
Q 041882 195 GEWEEASRVFDEMLERE 211 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~~ 211 (491)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.04 E-value=96 Score=24.23 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=10.3
Q ss_pred HHhhhcCChHHHHHHHH
Q 041882 49 NDLKEIRDPDEALSLFH 65 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~ 65 (491)
......|+.+....++.
T Consensus 10 ~~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHH
Confidence 34455577777666664
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.12 E-value=1.6e+02 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
+-.+.+.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566666666666666665555555455555555444
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.23 E-value=1e+02 Score=22.68 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTG-EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
+.+.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555433 3334455555554 55667777777766655556555555555555544
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.66 E-value=1.6e+02 Score=23.03 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-----------------hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPT-----------------VVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+|-+.+++..|+..++.+.+..+..| ...++.+...+.+.|+.++|+..+..--.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 45566777777777777665433311 12345555566666666666666655443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.50 E-value=1.5e+02 Score=22.82 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 041882 130 AIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN 180 (491)
Q Consensus 130 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 180 (491)
+.++|..|...|+-. -...|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 444555555443322 334555556666666666666666666666554543
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.44 E-value=1.8e+02 Score=23.53 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCC
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF-----EGSLKVLNAMLTSRH 387 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~ 387 (491)
+-.+.+.|+-.+-+|++.|-.|....-..++.+.-..|.- ..|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3467777777777777777666655555555555555432 234444444444454
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.17 E-value=2.7e+02 Score=25.66 Aligned_cols=55 Identities=18% Similarity=0.011 Sum_probs=36.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HhHHHHHHHHHHHcCC
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE-----YNEAKKMMFDMAYRGC 282 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 282 (491)
+.++.+.|+.++.+|.+.|..|....-..+..+...-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888899999999888877666555555666655553 2345555666666664
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.75 E-value=2.3e+02 Score=24.60 Aligned_cols=25 Identities=8% Similarity=0.364 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 041882 149 FNSLLDILVDNDRVDDAKRMFDDAD 173 (491)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~ 173 (491)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777777888888888777753
No 315
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.21 E-value=2.7e+02 Score=25.33 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCH---hHHHHHHHHHHHcC----CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 254 YALLMEGLCFKGEY---NEAKKMMFDMAYRG----CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI 326 (491)
Q Consensus 254 ~~~ll~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (491)
-..++...|..|+. +.|.+.|+.....+ ++||.. ..+...-. +..++-..+++..... .+..--..
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~~~~--~~~~~~~~l~~~y~~s---~~~~ek~~ 272 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGA--QSTEGWDFLYSKYQFS---LSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHHHHT--TSHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEeeee--CCHHHHHHHHHHHhcC---CCHHHHHH
Confidence 34556666777763 45666777665542 333322 12211111 1233333444444443 24444566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
++.+++...+.....++++......
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 6677766777777777776665543
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.04 E-value=1.9e+02 Score=23.48 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHh--HHHHHHHHHh--cCC--------------hhHHHHHHHHHHhcCCCCCHHH---
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPS--YASLIYKLAR--ARD--------------FDAVETVLGYIQDFNIRCKETL--- 113 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~--~~~--------------~~~a~~~~~~~~~~~~~~~~~~--- 113 (491)
+++.+-..+++.+...+..-.... --.++..+.+ .|+ ++.|..+|+.+.+.. +.+...
T Consensus 33 ~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~-~l~~~l~e~ 111 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEF-TLTEAVVES 111 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhh-cCcHHHHHH
Confidence 345566666777665665555432 1122222322 221 566888888887654 222222
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 114 -----FISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 114 -----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
-...+-.|.+.|.+++|.++|++....
T Consensus 112 i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 112 SRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 124456678888888888888887764
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.92 E-value=1.8e+02 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
+-.+++.|+-++-+|++.| .|.-..-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567888888888888877 555544455555554444
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.77 E-value=94 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=30.8
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
.+.+.|++++. .-..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555433 2333444444444 5566677777666655555555555555555544
No 319
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=33.65 E-value=2e+02 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
.++.-++..+.+....-+++..|+.
T Consensus 230 Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 230 VTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp BCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred EeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 3455555555555455454444443
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.30 E-value=1.4e+02 Score=21.79 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=9.9
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~ 312 (491)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444555554444444
No 321
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.21 E-value=1.7e+02 Score=26.53 Aligned_cols=332 Identities=12% Similarity=0.117 Sum_probs=143.4
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYP--SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
.+...+..|+.+-+..+++ .|..++.. .....+...+..|+.+-+.-+++.-...+. .+..- ...+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD-QTPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTS-CCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCC-CCHHHHHHHC
Confidence 3445566788776666554 34433321 112335556677887766665553221111 11111 1233444567
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCChHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP---NLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
|+.+-+..+++.-...+.. +..-+ +.+...+..|+.+.+..+++ .+..+ +...++ .+...+..|+.+-+
T Consensus 91 g~~~~v~~Ll~~ga~~~~~-~~~g~-t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~v- 162 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLA-TTAGH-TPLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRVA- 162 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCC-CTTCC-CHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHHH-
T ss_pred CCHHHHHHHHhCCCCCCCC-CCCCC-cHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHHH-
Confidence 7777666555543221111 11112 23344455677665555443 33222 111222 33445566776544
Q ss_pred HHHHHHHhCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 202 RVFDEMLEREVPPTVV---TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA---VTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
+.+.+.|..++.. ..+ .+...+..|+.+ +++.+.+.|..++. ..++ .+...+..|+.+-+..+
T Consensus 163 ---~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L-- 231 (437)
T 1n11_A 163 ---ELLLERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSL-- 231 (437)
T ss_dssp ---HHHHHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHH--
T ss_pred ---HHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHH--
Confidence 3444455443321 122 233445566654 34444555543322 1112 23334556665544443
Q ss_pred HHHHcCCCCChh---cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 276 DMAYRGCKPQLV---NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPD---VVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 276 ~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
.+.|..++.. ..+. +...+..|..+-+..+ .+.+..++ ..-.+. +...++.|+.+-+..+++
T Consensus 232 --l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~---- 299 (437)
T 1n11_A 232 --LQYGGSANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIK---- 299 (437)
T ss_dssp --HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----
T ss_pred --HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh----
Confidence 4444333321 1222 3334456665544433 33333222 111222 223345566654444443
Q ss_pred CCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 350 GGCKPNA---ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL---ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 350 ~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
.|..++. .-.+.+ ...+..|+.+ +.+.+++.|..++. .-.+.|.. .+..|..+ +.+.+.+.|..
T Consensus 300 ~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ga~ 369 (437)
T 1n11_A 300 HGVMVDATTRMGYTPL-HVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKNGAS 369 (437)
T ss_dssp HTCCTTCCCSSCCCHH-HHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCC
T ss_pred CCccCCCCCCCCCCHH-HHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHCcCC
Confidence 3333221 112222 2334456654 34445555544432 22233333 34556654 34445556665
Q ss_pred CC
Q 041882 424 FD 425 (491)
Q Consensus 424 ~~ 425 (491)
|+
T Consensus 370 ~~ 371 (437)
T 1n11_A 370 PN 371 (437)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.81 E-value=21 Score=29.85 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=10.1
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 041882 86 LARARDFDAVETVLGYIQDFN 106 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~ 106 (491)
.++.|+.+....+++.+.+.+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 334455555555555444433
No 323
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.65 E-value=1.9e+02 Score=23.18 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=13.5
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCC
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMG 71 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~ 71 (491)
+...+..|+.+.+..+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444455567666666666544444
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.34 E-value=1.1e+02 Score=23.03 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTG-EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
+.+.|+.++. .-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455555433 2333444444444 455566666666666555555555555555555553
No 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.30 E-value=33 Score=28.60 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
..++.|+.+....+++.+...+
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC
Confidence 3455666666666666544433
No 326
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.98 E-value=1.5e+02 Score=23.40 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=13.8
Q ss_pred cchHHHhhhcCChH---HHHHHHHHhhh
Q 041882 45 IPFVNDLKEIRDPD---EALSLFHRHHQ 69 (491)
Q Consensus 45 ~~~~~~l~~~~~~~---~A~~~~~~~~~ 69 (491)
.+.+..|.+.|+++ +|-++...|..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~ 62 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQ 62 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhc
Confidence 44555666666554 55555555553
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.51 E-value=2e+02 Score=22.97 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=8.2
Q ss_pred CChHHHHHHHHHHHhCCCC
Q 041882 195 GEWEEASRVFDEMLEREVP 213 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~ 213 (491)
.+.+.|+-++-+|++.|-.
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 3444444444444444433
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.32 E-value=1.3e+02 Score=23.01 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=34.0
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~ 266 (491)
+.+.|+..+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445655433 3445556666666666677777777665 555555555555556655553
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.18 E-value=1.7e+02 Score=22.02 Aligned_cols=58 Identities=5% Similarity=0.005 Sum_probs=28.8
Q ss_pred hhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 137 MTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 137 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
+.+.|.. .+..-..++..+...+.+-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344443 333344455555555556666666666665544444444444455555444
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.11 E-value=3.8e+02 Score=27.76 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR---------------- 390 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 390 (491)
++..+...|.++-|.++..- ++.++..--.+..+|...|++++|...|+++-. |+..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45556666666655543322 233443333455677778888888888876532 11110
Q ss_pred -------HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 391 -------LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 391 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..-|..++..+-+.|-++-+.++-+...+
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11344555555666666666666665554
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.05 E-value=1.8e+02 Score=22.33 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHhhh
Q 041882 86 LARARDFDAVETVLGYIQDFNIRC--KETLFISLIQ-H-----YGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 139 (491)
+...|+|-+|.++++.+-.....+ ....+..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334577777877777776654344 3455566665 2 2345777777777666533
No 332
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.01 E-value=1.9e+02 Score=22.58 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=34.4
Q ss_pred hHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 183 SFNVMIKG-RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 183 ~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
-|..|+.. +.-.|.+..++-++...- ..+..-|.. -+|.+.+++..|+..++.++...+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444432 334677777765553311 112222222 356788999999999999986544
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.56 E-value=24 Score=21.71 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=4.1
Q ss_pred HhHHHHHHHH
Q 041882 182 ISFNVMIKGR 191 (491)
Q Consensus 182 ~~~~~ll~~~ 191 (491)
.+|...|+..
T Consensus 22 wsweqamr~i 31 (59)
T 2b7e_A 22 WSFSRIISEL 31 (59)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 3444444433
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.48 E-value=3.3e+02 Score=25.26 Aligned_cols=141 Identities=10% Similarity=0.033 Sum_probs=86.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
..+++-|+++-. +.|++--...|..-+..+...|++++|.++-....+ |+-.+..+.+.+-..-...|...-.+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 367887777765 566666777888889999999999999998876654 3455666666555544455666667777
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
|..+.+.| ..+..----+++.....|+.+-..+++.+ ..+..+...=. ++ +..+...|+.+|.+.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 77776665 33544444455555566665555555443 22333333222 22 333455566555543
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.36 E-value=4.8e+02 Score=27.01 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
..++..|...+.++.+.++..++. .++..--.+..+|...|++++|.+.|++... |+..+.....
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~--------- 878 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA--------- 878 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG---------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc---------
Confidence 346777888888887776554443 3444445678888999999999999988642 2211110000
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcC
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT----VVTYNSLIGFLCRTG 230 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~ 230 (491)
.......++..... ......-|..++..+-+.+.++.+.++-+...+.--.-| ...|+.+.++.+..|
T Consensus 879 -~~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -VLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GGHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -chhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011111111110 011223677788888888888888888777776422212 235666666666544
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.09 E-value=2.3e+02 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 041882 163 DDAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP 213 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 213 (491)
+.+.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 35555666665554322 2334555555555666666666666665555433
No 337
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.92 E-value=1.7e+02 Score=24.67 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=4.8
Q ss_pred HHhcCChHHHH
Q 041882 191 RLKKGEWEEAS 201 (491)
Q Consensus 191 ~~~~~~~~~a~ 201 (491)
.+..|+.+-+.
T Consensus 102 A~~~g~~~~v~ 112 (285)
T 3kea_A 102 AVDSGNMQTVK 112 (285)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 34445544333
No 338
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=28.32 E-value=71 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
...+...+..+...++++.+..+++.+..
T Consensus 60 V~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 60 ILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 33444445556678899988888776654
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.29 E-value=2e+02 Score=22.04 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhhhCCCCc--CHHHHHHHHH-H-----HHhCCChhhHHHHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVR--TLQSFNSLLD-I-----LVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 174 (491)
|++-+|.++|+.+=.....+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777764433233 3455666666 2 2235777777777776644
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.04 E-value=3.1e+02 Score=24.09 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3445666666677777777776664
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.91 E-value=2.1e+02 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=6.8
Q ss_pred HhcCChHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSE 311 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~ 311 (491)
++.|+.+-+..+++.
T Consensus 205 ~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344554444444443
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.53 E-value=2.2e+02 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHHHHHHHcCCC
Q 041882 236 KGLFEDMIKKGTY 248 (491)
Q Consensus 236 ~~~~~~~~~~~~~ 248 (491)
.++.+.+++.|..
T Consensus 94 ~~iv~~Ll~~Gad 106 (186)
T 3t8k_A 94 TELCKIFLEKGAD 106 (186)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3444444444433
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.97 E-value=3.4e+02 Score=24.20 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCC
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT---VVTYNSLIGFLCRTGEM--GKAKGLFEDMIKKGTYPN 250 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~ 250 (491)
....++.-|...|+.++|.+.++++.. |+ ......++......++. +.+-.++..+...++.+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 346677778888888888888888643 22 12223333333333322 345555666666555433
No 344
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=26.75 E-value=1.8e+02 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
+.+|+.-+++.... ++|......++..+
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~f 31 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRF 31 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 44455555544332 33444444444433
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.68 E-value=1.3e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 041882 149 FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGE 196 (491)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 196 (491)
-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555555666777777777666555555555555555555553
No 346
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.14 E-value=2.6e+02 Score=22.57 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 195 GEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
.+.+.|+-++-+|++.|-.|.-..-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555555554444333333333333
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.73 E-value=4e+02 Score=24.56 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 041882 334 EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED-----FEGSLKVLNAMLTSRH 387 (491)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~ 387 (491)
..+.+.|+.++.+|.+.|..|....-..+..+....|. ...|...++....-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 45667777777777766655555444445555555443 2234445555555554
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.21 E-value=2.4e+02 Score=21.88 Aligned_cols=92 Identities=9% Similarity=-0.005 Sum_probs=42.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH---hHHHHHHHHHh-cCCh
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI---SFNVMIKGRLK-KGEW 197 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~ll~~~~~-~~~~ 197 (491)
++.|+++....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. ..+.
T Consensus 14 a~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 455666665555443211 0110111233444455565555556666666666555432 12222222221 2233
Q ss_pred HHHHHHHHHHHhCCCCCCh
Q 041882 198 EEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~ 216 (491)
....++.+.+.+.|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 4445666677777655543
No 349
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.01 E-value=3.5e+02 Score=23.63 Aligned_cols=181 Identities=10% Similarity=0.021 Sum_probs=85.3
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHH-----HH-------HHHHhcC---CCCC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVET-----VL-------GYIQDFN---IRCK 110 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-----~~-------~~~~~~~---~~~~ 110 (491)
++.-++...|+++.|.+++++-. |+..=...-..++..|....-+-.+.. +. +.-...+ ..++
T Consensus 33 ~laadhvAAGsFetAm~lLnrQv--Givnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~ 110 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQV--GVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPG 110 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHH--CBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCC
T ss_pred CcHHHHHHccCHHHHHHHHHHHh--CccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCC
Confidence 56778899999999999998744 433222233444555543211100000 00 0000000 0112
Q ss_pred HHHHH-HHHH--HHHhcCCHHHHHHHHHHhhhCC---C---CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH
Q 041882 111 ETLFI-SLIQ--HYGKAHLVDKAIEVFNRMTSFD---C---VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL 181 (491)
Q Consensus 111 ~~~~~-~l~~--~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 181 (491)
..... .|=. -+...|++++|+..|+.+...- + ..+..-...++..+. ++--|+.+ ++.++.+..
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~Rr~l~~-- 183 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELERRSLKE-- 183 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHHHHTCCT--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcCc--
Confidence 22222 2222 2367899999999998875420 0 001111122222211 11111111 121111111
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV--VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (491)
.+.....++-..+...++.|.. -+...-|....+.+++..|-.+-+++++.+..
T Consensus 184 -------------~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 184 -------------GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp -------------TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred -------------ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2333444444445544444332 23455566777888888888888888877543
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.82 E-value=1.6e+02 Score=21.48 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455555556666666666666554445555444555555444
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.40 E-value=1.6e+02 Score=26.00 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888877764
No 352
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.75 E-value=2.4e+02 Score=21.92 Aligned_cols=52 Identities=6% Similarity=-0.049 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (491)
..+.+..++..+.+.|+--|..--...+....+.|.+ ....+-.++...|+.
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 3455666777777777655554445555555544332 234555666666764
No 353
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.52 E-value=4.7e+02 Score=24.68 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CcCH--HH-HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH----
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC-VRTL--QS-FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL---- 181 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---- 181 (491)
-..+++.+++.|...+.++.|..+..+..-... .++. .. +-.+...+.-.+++.+|.+.+....+.-.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 366788888888888889999888888742111 1121 12 234567777788888888888887654211110
Q ss_pred --HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 182 --ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 182 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
..+..++-+-.-.|++.. ..+|. ..+.......|..+..++ +.|+..+....++.
T Consensus 310 r~~a~K~lI~V~LLlG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhcCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 111112222122465543 22221 111111234566676665 66777766555544
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.37 E-value=1.4e+02 Score=21.70 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555555566667777777666555566555555565555553
No 355
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.26 E-value=3.3e+02 Score=22.84 Aligned_cols=47 Identities=19% Similarity=0.043 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh---CCCCCCHHhHHHHHH-----HHHcCCCHHHHHHHHHHHHH
Q 041882 373 EGSLKVLNAMLT---SRHCPRLETFSCLLV-----GLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 373 ~~a~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 419 (491)
+.+.+.|+.+.+ ..++|+..+...|+- .|--.++.++|..+-++..+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555433 235665544433332 23457888888887776553
No 356
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.96 E-value=2.7e+02 Score=21.64 Aligned_cols=186 Identities=7% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 041882 97 TVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 176 (491)
.....+.+.=-.++..+-...+..+.+.+..+....+.+.+.. ++...-...+.++...+..+..-.+...+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~--- 86 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALK--- 86 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHc---
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 177 FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL 256 (491)
Q Consensus 177 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (491)
.++...-...+.++.+.++.+....+.+.+... +..+-...+.++...++.+....+.+.+... +..+-..
T Consensus 87 -d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~ 157 (201)
T 3ltj_A 87 -DEDGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQS 157 (201)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----SHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----CHHHHHH
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
.+.++...|+.+....+...+. .++...-...+.++.+.+..
T Consensus 158 A~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 158 AADALGEIGGERVRAAMEKLAE----TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhCchhHHHHHHHHHh----CCCHHHHHHHHHHHHHHHhh
No 357
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.28 E-value=1.7e+02 Score=18.96 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=28.6
Q ss_pred hhhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 67 HHQMGSKHSYPSYASLIYKLARAR-DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 67 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
+.+.|.+.+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334555555433 33444444433 34456666666655544445555544555554444
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.23 E-value=1.2e+02 Score=22.38 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=6.2
Q ss_pred HhcCChhHHHHHHHH
Q 041882 87 ARARDFDAVETVLGY 101 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~ 101 (491)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444433
No 359
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.87 E-value=1.7e+02 Score=18.44 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 325 NILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 325 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+.++..++...-.++++..+.++.+.| ..+..+|..-++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR 44 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGR 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 334444444444444444444444444 334444433333
No 360
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.79 E-value=1.4e+02 Score=17.65 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 041882 60 ALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVL 99 (491)
Q Consensus 60 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 99 (491)
..+.+..|...|+....--.+.++.. +.||...|++++
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHh
Confidence 33445666677766544444555543 667777776655
No 361
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.33 E-value=4.2e+02 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQ 103 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~ 103 (491)
...++.-|...|+.++|...++.+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3556777777788888777777654
No 362
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.14 E-value=3.3e+02 Score=21.60 Aligned_cols=55 Identities=5% Similarity=-0.141 Sum_probs=28.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYKP---------DVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
...+..|+.+.+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++.-..
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 33445566666655666665554322 2222222 3334556777766666665443
No 363
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.13 E-value=1.8e+02 Score=20.87 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041882 365 GFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+...++++.|..+...+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666655
Done!