Query 041883
Match_columns 33
No_of_seqs 59 out of 61
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eqb_A Spermidine/putrescine A 98.2 3.7E-07 1.3E-11 52.7 0.6 24 10-33 102-125 (330)
2 1pot_A POTD, spermidine/putres 98.1 1.4E-06 4.7E-11 50.1 1.9 24 10-33 98-121 (325)
3 4gl0_A LMO0810 protein; struct 98.1 1.2E-06 4.3E-11 50.8 1.6 24 10-33 104-127 (333)
4 1elj_A Maltodextrin-binding pr 98.0 3.1E-06 1.1E-10 49.7 2.5 25 9-33 104-128 (381)
5 3ttm_A Polyamine transport pro 97.9 1.1E-06 3.8E-11 50.7 -1.0 23 10-32 103-125 (346)
6 3ttn_A Polyamine transport pro 97.9 1.3E-06 4.5E-11 50.0 -0.8 23 10-32 100-122 (340)
7 4hs7_A Bacterial extracellular 97.8 8.7E-06 3E-10 48.3 2.5 25 9-33 137-161 (420)
8 2gha_A Maltose ABC transporter 97.8 7.4E-06 2.5E-10 48.1 2.2 25 9-33 97-121 (382)
9 2v84_A Spermidine/putrescine A 97.8 8.2E-06 2.8E-10 47.5 1.7 24 10-33 119-142 (343)
10 2xd3_A MALX, maltose/maltodext 97.8 1.2E-05 4.1E-10 47.8 2.3 25 9-33 129-153 (416)
11 1mh3_A Maltose binding-A1 home 97.8 1.1E-05 3.6E-10 47.9 2.0 25 9-33 99-123 (421)
12 4hw8_A Bacterial extracellular 97.7 1.8E-05 6E-10 47.0 2.5 25 9-33 137-161 (420)
13 2zyo_A Solute-binding protein; 97.7 2.1E-05 7.1E-10 46.2 2.5 25 9-33 117-141 (397)
14 3thi_A Protein (thiaminase I); 97.7 1.4E-05 4.7E-10 46.3 1.7 23 10-32 94-116 (371)
15 3dm0_A Maltose-binding peripla 97.7 1.5E-05 5.3E-10 49.5 2.0 24 10-33 100-123 (694)
16 1urs_A Maltose-binding protein 97.7 1.7E-05 5.7E-10 46.9 2.0 25 9-33 129-153 (402)
17 1a99_A POTF, putrescine-bindin 97.7 4E-06 1.4E-10 48.3 -0.8 23 10-32 99-121 (344)
18 3iot_A Maltose-binding protein 97.7 1.7E-05 5.8E-10 48.1 1.9 25 9-33 99-123 (449)
19 3mq9_A Bone marrow stromal ant 97.6 2.7E-05 9.3E-10 48.2 2.5 25 9-33 113-137 (471)
20 2gh9_A Maltose/maltodextrin-bi 97.6 2.4E-05 8.3E-10 45.9 2.0 25 9-33 101-125 (386)
21 3o3u_N Maltose-binding peripla 97.6 2.4E-05 8.2E-10 47.6 2.0 25 9-33 99-123 (581)
22 3oai_A Maltose-binding peripla 97.6 2.5E-05 8.4E-10 47.0 2.0 25 9-33 99-123 (507)
23 3csg_A MBP, maltose-binding pr 97.6 2.6E-05 8.8E-10 47.4 2.0 25 9-33 97-121 (461)
24 3n94_A Fusion protein of malto 97.6 2.6E-05 9E-10 47.6 2.0 25 9-33 101-125 (475)
25 4dxb_A RG13, maltose-binding p 97.6 2.6E-05 8.9E-10 50.2 2.0 24 10-33 100-123 (637)
26 2xz3_A Maltose ABC transporter 97.6 2.8E-05 9.6E-10 48.1 2.0 25 9-33 100-124 (463)
27 3ob4_A Conglutin, maltose ABC 97.6 2.8E-05 9.5E-10 48.5 2.0 25 9-33 99-123 (500)
28 1hsj_A Fusion protein consisti 97.6 2.9E-05 9.8E-10 47.4 1.9 25 9-33 99-123 (487)
29 3oo8_A ABC transporter binding 97.6 9.4E-06 3.2E-10 47.8 -0.3 23 10-32 129-151 (415)
30 4exk_A Maltose-binding peripla 97.5 3.5E-05 1.2E-09 48.5 2.0 24 10-33 104-127 (487)
31 4b3n_A Maltose-binding peripla 97.5 4.8E-05 1.6E-09 48.7 2.5 24 10-33 114-137 (602)
32 2pt1_A Iron transport protein; 97.5 9.3E-05 3.2E-09 42.4 3.3 24 8-33 108-131 (334)
33 2vgq_A Maltose-binding peripla 97.5 4.4E-05 1.5E-09 47.0 2.0 25 9-33 114-138 (477)
34 1r6z_P Chimera of maltose-bind 97.5 4.7E-05 1.6E-09 47.2 2.0 25 9-33 100-124 (509)
35 3k01_A Acarbose/maltose bindin 97.5 1.1E-05 3.7E-10 47.7 -0.9 24 9-32 129-152 (412)
36 2zxt_A Maltose-binding peripla 97.5 3.1E-05 1.1E-09 47.9 1.1 25 9-33 99-123 (465)
37 1y4c_A Maltose binding protein 97.5 4.9E-05 1.7E-09 48.3 2.0 25 9-33 99-123 (494)
38 3py7_A Maltose-binding peripla 97.4 5.6E-05 1.9E-09 47.1 2.0 25 9-33 100-124 (523)
39 4aq4_A SN-glycerol-3-phosphate 97.4 1.4E-05 4.8E-10 46.4 -0.8 25 8-32 112-136 (419)
40 3quf_A Extracellular solute-bi 97.4 1.3E-05 4.5E-10 47.2 -1.0 24 9-32 125-148 (414)
41 2nvu_B Maltose binding protein 97.4 6.9E-05 2.4E-09 49.6 2.2 25 9-33 103-127 (805)
42 2z8f_A Galacto-N-biose/lacto-N 97.4 2.5E-05 8.6E-10 46.4 0.0 24 9-32 118-141 (412)
43 4h1g_A Maltose binding protein 97.4 6.9E-05 2.4E-09 49.5 2.0 24 10-33 101-124 (715)
44 3mp6_A MBP, SGF29, maltose-bin 97.4 7.5E-05 2.6E-09 46.8 2.0 25 9-33 100-124 (522)
45 3h3g_A Fusion protein of malto 97.4 7.7E-05 2.6E-09 46.8 2.0 25 9-33 101-125 (539)
46 4gqo_A LMO0859 protein; virule 97.3 1.3E-05 4.5E-10 47.3 -1.5 24 9-32 135-158 (433)
47 2heu_A Sugar ABC transporter, 97.3 2.1E-05 7.1E-10 46.6 -0.6 24 9-32 115-138 (401)
48 2uvj_A TOGB, ABC type periplas 97.3 2.2E-05 7.5E-10 46.3 -0.6 24 9-32 107-130 (408)
49 4g68_A ABC transporter; transp 97.3 2.8E-05 9.5E-10 47.0 -0.6 23 10-32 166-188 (456)
50 3h4z_A Maltose-binding peripla 97.3 0.00011 3.7E-09 47.2 2.0 24 10-33 100-123 (568)
51 3f5f_A Maltose-binding peripla 97.3 0.00011 3.9E-09 47.2 2.0 25 9-33 99-123 (658)
52 3rpw_A ABC transporter; struct 97.3 7.9E-05 2.7E-09 43.3 1.2 23 11-33 129-151 (365)
53 1eu8_A Trehalose/maltose bindi 97.2 2.7E-05 9.4E-10 45.9 -0.9 24 9-32 110-133 (409)
54 3osr_A Maltose-binding peripla 97.2 0.00012 4.1E-09 48.4 2.0 25 9-33 135-159 (653)
55 3uor_A ABC transporter sugar b 97.2 3E-05 1E-09 47.0 -0.9 24 9-32 131-154 (458)
56 2w7y_A FCSSBP, probable sugar 97.2 2.3E-05 8E-10 46.6 -1.4 24 9-32 145-168 (430)
57 2b3f_A Glucose-binding protein 97.2 3.2E-05 1.1E-09 45.8 -0.9 24 9-32 107-131 (400)
58 4i1d_A ABC transporter substra 97.2 0.00013 4.4E-09 41.7 1.5 23 11-33 95-117 (324)
59 3i3v_A Probable secreted solut 97.2 2.2E-05 7.5E-10 46.1 -1.9 23 10-32 113-135 (405)
60 3osq_A Maltose-binding peripla 97.1 0.00019 6.4E-09 47.5 2.0 24 10-33 136-159 (661)
61 3pu5_A Extracellular solute-bi 96.9 0.00029 1E-08 40.3 1.4 22 12-33 102-123 (333)
62 1xvx_A YFUA; periplasmic iron 96.9 0.00046 1.6E-08 39.2 2.1 24 8-33 93-116 (312)
63 4euo_A ABC transporter, substr 96.7 0.00038 1.3E-08 40.0 0.6 22 12-33 92-113 (320)
64 2qry_A Thiamine-binding peripl 96.6 0.00071 2.4E-08 39.1 1.6 22 12-33 117-138 (330)
65 1y9u_A Putative iron binding p 96.6 0.00073 2.5E-08 38.4 1.6 24 8-33 94-118 (323)
66 1q35_A Iron binding protein FB 96.6 0.0018 6E-08 36.8 3.1 24 8-33 90-113 (320)
67 3a09_A ALGQ1; sugar binding pr 96.5 0.00033 1.1E-08 41.6 -0.3 25 8-32 119-146 (490)
68 1nnf_A Iron-utilization peripl 96.3 0.0023 8E-08 36.1 2.5 24 8-33 90-113 (309)
69 4edp_A ABC transporter, substr 96.3 0.00029 1E-08 39.8 -1.3 22 10-31 128-149 (351)
70 3vlv_A ALGQ1; sugar binding pr 96.3 0.00061 2.1E-08 41.9 -0.3 25 8-32 119-146 (502)
71 3omb_A Extracellular solute-bi 96.2 0.00043 1.5E-08 42.7 -1.1 24 9-32 145-174 (535)
72 2voz_A FUTA2, periplasmic iron 96.0 0.0048 1.6E-07 35.3 2.8 24 8-33 118-141 (346)
73 3e13_X Putative iron-uptake AB 95.5 0.014 4.7E-07 32.8 3.2 26 6-33 89-115 (322)
74 3c9h_A ABC transporter, substr 92.4 0.096 3.3E-06 30.4 2.6 22 10-33 126-147 (355)
75 1sbp_A Sulfate-binding protein 83.7 0.6 2E-05 26.1 1.8 16 15-31 90-105 (310)
76 3cg1_A UPF0100 protein PF0080; 82.6 0.59 2E-05 26.6 1.6 18 14-31 83-100 (296)
77 2k1g_A Lipoprotein SPR; soluti 80.2 0.3 1E-05 27.2 -0.3 9 15-23 18-26 (135)
78 3cfx_A UPF0100 protein MA_0280 78.0 1.3 4.5E-05 25.3 2.0 18 14-31 78-95 (296)
79 3cij_A UPF0100 protein AF_0094 77.6 1.1 3.9E-05 25.5 1.7 18 14-31 78-95 (295)
80 2jyx_A Lipoprotein SPR; soluti 74.0 0.74 2.5E-05 25.1 0.2 10 15-24 18-27 (136)
81 3arc_H Photosystem II reaction 73.9 0.2 6.8E-06 26.3 -2.0 15 9-26 16-30 (65)
82 1tz7_A 4-alpha-glucanotransfer 68.8 2.2 7.5E-05 28.4 1.6 15 7-21 264-279 (505)
83 3gt2_A Putative uncharacterize 68.5 1 3.4E-05 24.7 -0.1 8 15-22 28-35 (142)
84 3cfz_A UPF0100 protein MJ1186; 66.5 3 0.0001 23.8 1.7 18 14-31 78-95 (292)
85 3npf_A Putative dipeptidyl-pep 61.4 2.1 7.2E-05 25.5 0.4 9 15-23 168-176 (306)
86 3h41_A NLP/P60 family protein; 59.1 2.1 7.1E-05 25.9 0.1 10 15-24 201-210 (311)
87 3pbi_A Invasion protein; pepti 58.2 2 6.9E-05 25.5 -0.1 10 14-23 96-105 (214)
88 3m1u_A Putative gamma-D-glutam 55.3 2.4 8.3E-05 27.4 -0.0 9 15-23 289-297 (434)
89 3ne0_A Resuscitation promoting 55.0 2.5 8.4E-05 25.3 -0.1 10 14-23 96-105 (214)
90 3t37_A Probable dehydrogenase; 53.9 2.9 0.0001 25.5 0.1 16 2-17 472-487 (526)
91 2hbw_A NLP/P60 protein; NLP/P6 52.1 3 0.0001 24.8 0.0 9 15-23 112-120 (235)
92 4hpe_A Putative cell WALL hydr 51.0 3.2 0.00011 25.4 -0.0 10 15-24 199-208 (308)
93 4fdy_A Similar to lipoprotein, 49.0 3.7 0.00013 25.6 0.0 10 15-24 203-212 (313)
94 3eyi_A Z-DNA-binding protein 1 42.8 4 0.00014 21.6 -0.4 18 3-21 51-70 (72)
95 2zdj_A Hypothetical protein TT 39.9 12 0.00042 19.6 1.2 17 12-28 50-67 (69)
96 1atg_A MODA, periplasmic molyb 39.5 18 0.0006 18.5 1.8 18 14-31 73-90 (231)
97 3hxi_C Eukaryotic translation 35.6 14 0.00049 15.4 0.9 10 21-30 2-11 (21)
98 3e5z_A Putative gluconolactona 35.4 38 0.0013 18.2 2.8 20 7-29 225-244 (296)
99 3snv_A Symfoil-4T/permutation 34.0 18 0.0006 20.0 1.3 13 6-18 65-77 (143)
100 4aay_B AROB; oxidoreductase, r 33.6 19 0.00065 20.5 1.4 13 7-19 152-164 (175)
101 3bpk_A Nitrilotriacetate monoo 29.2 43 0.0015 18.7 2.4 17 8-24 37-53 (206)
102 2jbv_A Choline oxidase; alcoho 29.0 13 0.00045 23.6 0.2 16 2-17 478-493 (546)
103 2x8n_A CV0863; non-uniform sam 28.9 25 0.00086 19.0 1.4 12 9-20 44-55 (111)
104 3q7x_A De novo designed beta-t 28.6 25 0.00085 19.1 1.3 13 6-18 62-74 (132)
105 3sql_A Glycosyl hydrolase fami 28.6 15 0.00051 24.5 0.5 9 13-21 483-491 (535)
106 3p6j_A De novo designed beta-t 28.6 25 0.00084 19.6 1.3 13 6-18 87-99 (142)
107 3k8r_A Uncharacterized protein 28.2 27 0.00091 19.3 1.4 12 9-20 44-55 (124)
108 1q7f_A NHL, brain tumor CG1071 27.5 65 0.0022 17.1 2.8 23 7-31 258-280 (286)
109 1kdg_A CDH, cellobiose dehydro 25.6 16 0.00054 22.8 0.1 15 3-17 492-506 (546)
110 3fge_A Putative flavin reducta 25.2 56 0.0019 18.2 2.4 18 7-24 36-53 (203)
111 2b4l_A Glycine betaine-binding 24.8 15 0.00052 21.6 -0.0 15 10-24 11-25 (268)
112 3p6i_A De novo designed beta-t 24.7 32 0.0011 19.4 1.3 13 6-18 97-109 (142)
113 1rq8_A Conserved hypothetical 24.5 43 0.0015 18.0 1.8 11 21-31 78-88 (104)
114 3g4e_A Regucalcin; six bladed 23.8 88 0.003 17.1 3.0 23 7-30 206-228 (297)
115 2p9w_A MAL S 1 allergenic prot 22.6 56 0.0019 20.5 2.2 25 7-31 164-196 (334)
116 3f2v_A General stress protein 22.5 38 0.0013 19.1 1.3 17 8-24 58-74 (192)
117 2vov_A MOPE, surface-associate 21.2 10 0.00036 24.3 -1.3 21 2-23 308-328 (336)
118 1esw_A Amylomaltase; (beta,alp 21.1 24 0.00084 23.3 0.4 15 7-21 251-266 (500)
119 1rli_A Trp repressor binding p 20.6 34 0.0012 17.7 0.9 16 8-23 71-86 (184)
No 1
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=98.15 E-value=3.7e-07 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+||.|++++|+||+|.|+
T Consensus 102 ~g~~y~vP~~~~~~~l~Ynkd~~~ 125 (330)
T 4eqb_A 102 PGNKFSIPYFWGTLGIVYNETMVD 125 (330)
T ss_dssp GGGSSCEEEEEEEEEEEEEGGGCS
T ss_pred CCCeEEEEEecccEEEEEEHHHcC
Confidence 589999999999999999999874
No 2
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=98.07 E-value=1.4e-06 Score=50.08 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+||.|++++|+||++.|+
T Consensus 98 ~g~~y~vP~~~~~~~l~Ynkd~~~ 121 (325)
T 1pot_A 98 PNNDYSIPYIWGATAIGVNGDAVD 121 (325)
T ss_dssp TTCSSCEEEEEEEEEEEEETTTSC
T ss_pred CCCcEEeeEeeeeEEEEEEHHHcC
Confidence 799999999999999999999884
No 3
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=98.06 E-value=1.2e-06 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|+.|++||.||+++|+||+++|.
T Consensus 104 ~~~~y~vp~~~~~~~i~yn~~~~~ 127 (333)
T 4gl0_A 104 DDNKYSMPYFWGTLGIIYNKEMFP 127 (333)
T ss_dssp GGGSSEEEEEEEEEEEEEETTTCT
T ss_pred CCCceEeceeeeeeeeeechhhcc
Confidence 589999999999999999999873
No 4
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=98.00 E-value=3.1e-06 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
-+|++||+|+.+++.++.||||.|+
T Consensus 104 ~dGk~ygvP~~~~~~~l~YNkdlf~ 128 (381)
T 1elj_A 104 YKGHYYALPFAAETVAIIYNKEMVS 128 (381)
T ss_dssp ETTEECEEEEEEEECEEEEETTTCS
T ss_pred ECCEEEEeccccceeEEEEehHhhc
Confidence 3799999999999999999999984
No 5
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=97.86 E-value=1.1e-06 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+||.|++++|+||++.|
T Consensus 103 ~g~~y~vP~~~~~~~l~Ynkd~~ 125 (346)
T 3ttm_A 103 PGNEHAIPYMWGTIGIGYNPDKV 125 (346)
T ss_dssp GGGCSEEEEEEEEEEEEECHHHH
T ss_pred CCCeEEeEEeeccEEEEEEhHHh
Confidence 69999999999999999999876
No 6
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=97.86 E-value=1.3e-06 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.6
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+||.|++++|+||++.|
T Consensus 100 ~g~~y~vP~~~~~~~l~Ynkd~~ 122 (340)
T 3ttn_A 100 PGNQYAVPYLWGTNGIGYNVAKV 122 (340)
T ss_dssp GGGCSEEEEEEEEEEEEEEHHHH
T ss_pred CCCeEEeEEEeeeeEEEEehHHh
Confidence 69999999999999999999876
No 7
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=97.84 E-value=8.7e-06 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
-||++||+|+..++.+|.||+|.|+
T Consensus 137 ~dGk~y~vP~~~~~~~l~Ynkdl~~ 161 (420)
T 4hs7_A 137 YDNKQLALPAIVETTALFYNKKLVK 161 (420)
T ss_dssp ETTEECEEEEEEECCEEEEETTTCC
T ss_pred ECCEEEEEeccccceEEEEEccccc
Confidence 3899999999999999999999885
No 8
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=97.83 E-value=7.4e-06 Score=48.07 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 97 ~dG~~y~vP~~~~~~~l~YNkdl~~ 121 (382)
T 2gha_A 97 YGGKLYGIPYAMEAIALIYNKDYVP 121 (382)
T ss_dssp ETTEECCEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEehhhcc
Confidence 4899999999999999999999884
No 9
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=97.77 E-value=8.2e-06 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+|+.+++.+|+||++.|+
T Consensus 119 ~G~~y~vP~~~~~~~l~YNkd~~~ 142 (343)
T 2v84_A 119 PKMEYSVPYYLGAAGIAVNKKAVP 142 (343)
T ss_dssp TTCSSCEEEEEECCEEEEETTTCC
T ss_pred CCceEEeeeEeccEEEEEEhHhcC
Confidence 699999999999999999999884
No 10
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=97.76 E-value=1.2e-05 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+..++.+|.||+|.|+
T Consensus 129 ~dG~~ygvP~~~~~~~l~YNkdl~~ 153 (416)
T 2xd3_A 129 ANGKVYGAPAVIESLVMYYNKDLVK 153 (416)
T ss_dssp TTCCBCCEEEEEECCEEEEETTTCS
T ss_pred eCCeEEEEeeecCceEEEEEhhhhc
Confidence 5899999999999999999999885
No 11
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=97.76 E-value=1.1e-05 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 99 ~dG~~y~vP~~~~~~~l~Ynkdl~~ 123 (421)
T 1mh3_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (421)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCeEEEeeeeccceEEEEehhhcc
Confidence 3899999999999999999999884
No 12
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=97.72 E-value=1.8e-05 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+.+.+|.||+|.|+
T Consensus 137 ~dG~~y~vP~~~~~~~l~Ynkdl~~ 161 (420)
T 4hw8_A 137 YDNKQLALPAIVETTALFYNKKLVK 161 (420)
T ss_dssp ETTEECEEEEEEECCEEEEETTTCC
T ss_pred ECCEEEEeeeeccceEEEEEhhhhh
Confidence 3899999999999999999999985
No 13
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=97.69 E-value=2.1e-05 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+...+.+|.||+|.|+
T Consensus 117 ~dG~~y~~P~~~~~~~l~Ynkdl~~ 141 (397)
T 2zyo_A 117 YGGKLYGLPKAIESVALIYNKKLMG 141 (397)
T ss_dssp ETTEECEEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEecccccceEEEEehhhhc
Confidence 4899999999999999999999885
No 14
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=97.69 E-value=1.4e-05 Score=46.33 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+|+.+++.+|.||+|++
T Consensus 94 ~G~~ygvP~~~~~~~l~YNkd~~ 116 (371)
T 3thi_A 94 NGEVYGLPQILCTNLLFYRKGDL 116 (371)
T ss_dssp TTEECCEEEEEECEEEEEETTCH
T ss_pred CCEEEEecccCceeEEEEeCccc
Confidence 79999999999999999999964
No 15
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.69 E-value=1.5e-05 Score=49.55 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+||.+++.++.||||.|.
T Consensus 100 ~Gk~ygvP~~~~~~~l~YNkdl~~ 123 (694)
T 3dm0_A 100 NGKLIAYPIAVEALSLIYNKDLLP 123 (694)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEEEeeeeEEEEchHHcc
Confidence 799999999999999999999873
No 16
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=97.68 E-value=1.7e-05 Score=46.86 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+...+.+|.||+|.|+
T Consensus 129 ~dG~~y~vP~~~~~~~l~YNkdl~~ 153 (402)
T 1urs_A 129 VNGTMYSVPVSVQVAAIYYNKKLVP 153 (402)
T ss_dssp ETTEECSEEEEEEECEEEEETTTCS
T ss_pred ECCEEEEecccCcccEEEEehhhhc
Confidence 4899999999999999999999985
No 17
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=97.67 E-value=4e-06 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+|+.+++.+|+||+|.|
T Consensus 99 ~g~~y~vP~~~~~~~l~Ynkd~~ 121 (344)
T 1a99_A 99 PDNKFAMPYMWATTGIGYNVDKV 121 (344)
T ss_dssp GGGCSEEEEEEEEEEEEEEHHHH
T ss_pred CCCcEEeeEEeeeEEEEEEhHHc
Confidence 69999999999999999999876
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=97.66 E-value=1.7e-05 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 99 ~dGk~ygvP~~~~~~~l~YNkdl~~ 123 (449)
T 3iot_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (449)
T ss_dssp SSSCBCCEEEEEEECEEEEETTTCS
T ss_pred ECCEEEEeccccceeEEEEehHHhc
Confidence 4899999999999999999999884
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.63 E-value=2.7e-05 Score=48.20 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 113 ~dGk~YglP~~~~~~~l~YNkdl~~ 137 (471)
T 3mq9_A 113 YNGKLIAYPIAVEALSLIYNKDLLP 137 (471)
T ss_dssp ETTEECEEEEEEEECEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEEhHHhc
Confidence 3899999999999999999999884
No 20
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=97.61 E-value=2.4e-05 Score=45.93 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+..++.++.||+|.|+
T Consensus 101 ~dG~~y~vP~~~~~~~l~YNkdl~~ 125 (386)
T 2gh9_A 101 FGGRLMGLPAFAESVALIYNKKYVK 125 (386)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEeccccceeEEEEehhhhc
Confidence 4899999999999999999999884
No 21
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=97.61 E-value=2.4e-05 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 99 ~dG~~y~~P~~~~~~~l~ynkdl~~ 123 (581)
T 3o3u_N 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (581)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEEhHHhh
Confidence 3899999999999999999999985
No 22
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=97.61 E-value=2.5e-05 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+.+.++.||+|.|+
T Consensus 99 ~~G~~y~~P~~~~~~~l~ynkdl~~ 123 (507)
T 3oai_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (507)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEeeccccceEEEEehHhhc
Confidence 3899999999999999999999984
No 23
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=97.59 E-value=2.6e-05 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 97 ~dGk~y~vP~~~~~~~l~YNkdl~~ 121 (461)
T 3csg_A 97 YNGKLIAYPIAVEALSLIYNKDLLP 121 (461)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEeeccccceEEEEEhhhhc
Confidence 4899999999999999999999985
No 24
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=97.59 E-value=2.6e-05 Score=47.58 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 101 ~dGk~yglP~~~~~~~l~YNkdl~~ 125 (475)
T 3n94_A 101 YNGKLIAYPIAVEALSLIYNKDLLP 125 (475)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEeeeeccceEEEEehHHhc
Confidence 3899999999999999999999884
No 25
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=97.58 E-value=2.6e-05 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
||++||+|+.+++.+|.||+|.|+
T Consensus 100 dGk~YgvP~~~~~~~l~YNkdlf~ 123 (637)
T 4dxb_A 100 NGKLIAYPIAVEALSLIYNKDLLP 123 (637)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEEecceEEEEEEcHHhc
Confidence 799999999999999999999984
No 26
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=97.57 E-value=2.8e-05 Score=48.05 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 100 ~dGk~YgvP~~~~~~~l~YNkdlf~ 124 (463)
T 2xz3_A 100 YNGKLIAYPIAVEALSLIYNKDLLP 124 (463)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEEhHhhh
Confidence 4899999999999999999999885
No 27
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=97.57 E-value=2.8e-05 Score=48.48 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 99 ~dGk~YgvP~~~~~~~l~YNkdl~~ 123 (500)
T 3ob4_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (500)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEecccCceEEEEEhHHhc
Confidence 4799999999999999999999984
No 28
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=97.56 E-value=2.9e-05 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 99 ~dGk~ygvP~~~~~~~l~YNkdl~~ 123 (487)
T 1hsj_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (487)
T ss_dssp ETTEECEEEEEEECCEEEEEGGGCS
T ss_pred ECCEEEEeeeecceeEEEEEhhhhc
Confidence 4899999999999999999999884
No 29
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=97.55 E-value=9.4e-06 Score=47.82 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=21.9
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+|+.+.+.+|.||+|.|
T Consensus 129 ~G~~y~vP~~~~~~~l~Ynkdl~ 151 (415)
T 3oo8_A 129 DGHYYLVPLYNYPWVVFYNKSVF 151 (415)
T ss_dssp TSCBCEEEEEECCEEEEEEHHHH
T ss_pred CCcEEEEecccceEEEEEeHHHH
Confidence 89999999999999999999876
No 30
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=97.53 E-value=3.5e-05 Score=48.47 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
||++||+|+.+++.++.||+|.|+
T Consensus 104 dGk~YgvP~~~~~~~l~YNkdlf~ 127 (487)
T 4exk_A 104 NGKLIAYPIAVEALSLIYNKDLLP 127 (487)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEecCeEeccEEEEEEeeccc
Confidence 899999999999999999999884
No 31
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=97.51 E-value=4.8e-05 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
||++||+|+.+.+.+|.||+|.|+
T Consensus 114 dGk~YgvP~~~~~~~l~YNkdlf~ 137 (602)
T 4b3n_A 114 NGKLIAYPIAVEALSLIYNKDLLP 137 (602)
T ss_dssp TTEECEEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEEecceEEEEEEhHHhc
Confidence 899999999999999999999884
No 32
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=97.49 E-value=9.3e-05 Score=42.43 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCCcEEEeeecccceEEEEeCCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.+|++||+|+ ++.+|+||++.|+
T Consensus 108 ~~dG~~y~~p~--~~~~l~Ynkd~~~ 131 (334)
T 2pt1_A 108 SPDGMWFGFTK--RARVIMYNKGKVK 131 (334)
T ss_dssp CTTSSCEEEEE--EEEEEEEETTTCC
T ss_pred CCCCcEEeecc--ccEEEEEeccccc
Confidence 57899999997 8999999999884
No 33
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=97.49 E-value=4.4e-05 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 114 ~dGk~ygvP~~~~~~~l~YNkdl~~ 138 (477)
T 2vgq_A 114 YNGKLIAYPIAVEALSLIYNKDLLP 138 (477)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEecccCceEEEEehHhhc
Confidence 4899999999999999999999884
No 34
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=97.47 E-value=4.7e-05 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 100 ~dGk~YgvP~~~~~~~l~YNkdl~~ 124 (509)
T 1r6z_P 100 YNGKLIAYPIAVEALSLIYNKDLLP 124 (509)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEeccccCceEEEEEhHhhc
Confidence 4899999999999999999999884
No 35
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=97.46 E-value=1.1e-05 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.+|++||+|+.+++.+|.||+|.|
T Consensus 129 ~dG~~y~vP~~~~~~~l~ynkdl~ 152 (412)
T 3k01_A 129 YEGKTYAVPQVIDTLALFYNKELL 152 (412)
T ss_dssp ETTEECCEEEEEEECEEEEEHHHH
T ss_pred cCCcEEEeeeecceeEEEEEHHHH
Confidence 389999999999999999999876
No 36
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=97.46 E-value=3.1e-05 Score=47.88 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.4
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 99 ~dGk~YgvP~~~~~~~l~YNkdlf~ 123 (465)
T 2zxt_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (465)
T ss_dssp SSSSBCSEEEEEECCEEECBTTTBS
T ss_pred ECCEEEEeeccccceEEEEEhHhhc
Confidence 4899999999999999999999884
No 37
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=97.46 E-value=4.9e-05 Score=48.34 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 99 ~dGk~YgvP~~~~~~~l~YNkdlf~ 123 (494)
T 1y4c_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (494)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeCCeeEEEEEhHHhh
Confidence 4899999999999999999999984
No 38
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=97.43 E-value=5.6e-05 Score=47.09 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.||++||+|+.+++.++.||+|.|+
T Consensus 100 ~dGk~YglP~~~~~~~l~YNkdl~~ 124 (523)
T 3py7_A 100 YNGKLIAYPIAVEALSLIYNKDLLP 124 (523)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEEhHHhh
Confidence 4899999999999999999999885
No 39
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=97.41 E-value=1.4e-05 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCCCcEEEeeecccceEEEEeCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
..+|++||+|+...+.++.||+|.|
T Consensus 112 ~~dGk~y~vP~~~~~~~l~Ynkdlf 136 (419)
T 4aq4_A 112 SKTGHLLSQPFNSSTPVLYYNKDAF 136 (419)
T ss_dssp TTTCCBSSEEEEEECEEEEEEHHHH
T ss_pred CcCCEEEeccccccceEEEEEhHHH
Confidence 3489999999999999999999876
No 40
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=97.40 E-value=1.3e-05 Score=47.20 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=22.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.+|++||+|+.+++.+|.||+|.|
T Consensus 125 ~dG~~y~vP~~~~~~~l~ynkdl~ 148 (414)
T 3quf_A 125 QDGKTYGMPVSAWVGAFFYNKDIL 148 (414)
T ss_dssp ETTEECCBCCEEEEEEEEEEHHHH
T ss_pred cCCeEEEeccccceeEEEEeHHHH
Confidence 489999999999999999999876
No 41
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=97.39 E-value=6.9e-05 Score=49.56 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 103 ~dGk~YgvP~~~~~~~l~YNkdlf~ 127 (805)
T 2nvu_B 103 YNGKLIAYPIAVEALSLIYNKDLLP 127 (805)
T ss_dssp ETTEECEEEEEEEECEEEECTTTCS
T ss_pred ECCEEEEEecccceeEEEEEhHhhc
Confidence 3899999999999999999999884
No 42
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=97.38 E-value=2.5e-05 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.+|++||+|+...+.++.||+|.|
T Consensus 118 ~~G~~y~vP~~~~~~~l~Ynkdl~ 141 (412)
T 2z8f_A 118 VGGKAYGLPQDTGPLVYFYNKAEF 141 (412)
T ss_dssp ETTEECEEECBCCBEEEEEEHHHH
T ss_pred cCCeEEEeeccCCceEEEEeHHHH
Confidence 489999999999999999999876
No 43
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=97.37 E-value=6.9e-05 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
||++||+|+.+++.++.||+|.|+
T Consensus 101 dGk~YgvP~~~~~~~l~YNkdlf~ 124 (715)
T 4h1g_A 101 NGKLIAYPIAVEALSLIYNKDLLP 124 (715)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEEecceEEEEEEhHHhc
Confidence 799999999999999999999884
No 44
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=97.36 E-value=7.5e-05 Score=46.77 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 100 ~dGk~YglP~~~~~~~l~YNkdl~~ 124 (522)
T 3mp6_A 100 YNGKLIAYPIAVEALSLIYNKDLLP 124 (522)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeeccceEEEEEhHhhc
Confidence 3799999999999999999999884
No 45
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=97.36 E-value=7.7e-05 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+.+.++.||+|.|+
T Consensus 101 ~dGk~YglP~~~~~~~l~YNkdl~~ 125 (539)
T 3h3g_A 101 YNGKLIAYPIAVEALSLIYNKDLLP 125 (539)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEeeecCceEEEEEhHHhc
Confidence 3799999999999999999999884
No 46
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=97.35 E-value=1.3e-05 Score=47.30 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=22.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.||++||+|+...+.++.||+|.|
T Consensus 135 ~dGk~y~~P~~~~~~~l~Ynkdlf 158 (433)
T 4gqo_A 135 SDGNQYVLPVYSNPILFAWRLDTL 158 (433)
T ss_dssp TTSCCCCEEEEEEECEEEECHHHH
T ss_pred cCCEEEEEeccCceEEEEEehhhH
Confidence 489999999999999999999876
No 47
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=97.35 E-value=2.1e-05 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.||++||+|+...+.+|.||+|.|
T Consensus 115 ~dG~~y~vP~~~~~~~l~Ynkdl~ 138 (401)
T 2heu_A 115 VNEKVYNVPFTANAYGIYYNKDKF 138 (401)
T ss_dssp BTTBCCCEECBBCCEEEEEEHHHH
T ss_pred eCCEEEEEecccCceEEEEeHHHH
Confidence 489999999999999999999876
No 48
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=97.33 E-value=2.2e-05 Score=46.29 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=22.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.+|++||+|+...+.++.||+|.|
T Consensus 107 ~dGk~y~vP~~~~~~~l~YNkdl~ 130 (408)
T 2uvj_A 107 VNGKLNGIPISVTARIFYFNDATW 130 (408)
T ss_dssp ETTEECCEEEEEEEEEEEEEHHHH
T ss_pred ECCEEEEeeccccceEEEEcHHHH
Confidence 489999999999999999999876
No 49
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=97.28 E-value=2.8e-05 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.9
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
||++||+|+...+.++.||+|.|
T Consensus 166 dGk~Y~~P~~~~~~~l~Ynkdl~ 188 (456)
T 4g68_A 166 NGKIYGIPFDQQASVLYINKELF 188 (456)
T ss_dssp TTEECCEEEEEEEEEEEEEHHHH
T ss_pred CCEEEEEEeeccceeeeccHHHH
Confidence 89999999999999999999876
No 50
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=97.27 E-value=0.00011 Score=47.15 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+|+.+++.++.||+|.|+
T Consensus 100 dGk~YgvP~~~~~~~l~YNkdl~~ 123 (568)
T 3h4z_A 100 NGKLIAYPIAVEALSLIYNKDLLP 123 (568)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEeccCceEEEEEhHHhh
Confidence 799999999999999999999884
No 51
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=97.26 E-value=0.00011 Score=47.23 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.++.||+|.|+
T Consensus 99 ~dGk~YglP~~~~~~~l~YNkdl~~ 123 (658)
T 3f5f_A 99 YNGKLIAYPIAVEALSLIYNKDLLP 123 (658)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEecccCeEEEEEEhHHhh
Confidence 3899999999999999999999884
No 52
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=97.26 E-value=7.9e-05 Score=43.32 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=21.6
Q ss_pred CcEEEeeecccceEEEEeCCCCC
Q 041883 11 DKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 11 G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
|+.||+||.+++++|+||++.|+
T Consensus 129 ~~~y~~p~~~~~~~l~ynk~~~~ 151 (365)
T 3rpw_A 129 KRKKGVALQVIGVGLVYNKDKFK 151 (365)
T ss_dssp EETTEEEEEEEEEEEEEETTTSC
T ss_pred cCCeEEeeeeeeEEEEEEhhhcC
Confidence 78999999999999999999884
No 53
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=97.24 E-value=2.7e-05 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=22.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
-+|++||+|+...+.++.||||.|
T Consensus 110 ~dGk~ygvP~~~~~~~l~Ynkdlf 133 (409)
T 1eu8_A 110 QGGKLYALPVYIDAGLLYYRKDLL 133 (409)
T ss_dssp ETTEECCEEEEEEECEEEEEHHHH
T ss_pred CCCEEEEEeeeccceEEEEEHHHH
Confidence 489999999999999999999876
No 54
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=97.24 E-value=0.00012 Score=48.42 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCcEEEeeecccceEEEEeCCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
.+|++||+|+.+++.+|.||+|.|+
T Consensus 135 ~dGk~YglP~~~~~~~l~YNkdlfe 159 (653)
T 3osr_A 135 YNGKLIAYPIAVEALSLIYNKDLLP 159 (653)
T ss_dssp ETTEECSEEEEEECCEEEEETTTCS
T ss_pred ECCEEEEEEecCceeEEEEEhHHhh
Confidence 3899999999999999999999884
No 55
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=97.23 E-value=3e-05 Score=47.00 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.+|++||+|+.+.+.+|.||+|.|
T Consensus 131 ~dG~~y~vP~~~~~~~l~Ynkdl~ 154 (458)
T 3uor_A 131 VDGTLYGVPWYVDTRLLFYRKDLL 154 (458)
T ss_dssp ETTEECCEEEEEECCEEEEEHHHH
T ss_pred ECCEEEEecccCcccEEEEeHHHH
Confidence 489999999999999999999876
No 56
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=97.21 E-value=2.3e-05 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCCcEEEeeecccceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
.||++||+|+...+.++.||+|.|
T Consensus 145 ~dGk~ygvP~~~~~~~l~YNkdl~ 168 (430)
T 2w7y_A 145 KDGKIYTVHEQLFTMGLWYNKDIF 168 (430)
T ss_dssp ETTEECCBCSBCEEECEEEEHHHH
T ss_pred cCCeEEEeeccccceEEEEeHHHH
Confidence 489999999999999999999876
No 57
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=97.20 E-value=3.2e-05 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCCcEEEeeecc-cceEEEEeCCCC
Q 041883 9 PRDKIWAASHRW-GTVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrW-G~t~IaYr~dkf 32 (33)
.||++||+|+.. ++.++.||+|.|
T Consensus 107 ~dG~~y~vP~~~~~~~~l~Ynkdl~ 131 (400)
T 2b3f_A 107 YKGGIWSVPVNIHRSNVMWYLPAKL 131 (400)
T ss_dssp ETTEECCEECCBEESCEEEECHHHH
T ss_pred ECCEEEEEEEeeccCceEEEcHHHH
Confidence 489999999999 899999999876
No 58
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=97.18 E-value=0.00013 Score=41.66 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.2
Q ss_pred CcEEEeeecccceEEEEeCCCCC
Q 041883 11 DKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 11 G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
|+.||+||.+++.+|+||++.|.
T Consensus 95 ~~~y~vp~~~~~~~l~yn~~~~~ 117 (324)
T 4i1d_A 95 RSPYSVSYEFYSSVLAYSQKTFP 117 (324)
T ss_dssp BCSSCEEEEEEEEEEEEETTTCS
T ss_pred ccCceeeeecceEEEEEehhhcC
Confidence 57899999999999999999884
No 59
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=97.15 E-value=2.2e-05 Score=46.12 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=21.4
Q ss_pred CCcEEEeeecccceEEEEeCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKAS 32 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf 32 (33)
+|++||+|+.+.+.++.||+|.|
T Consensus 113 dG~~y~~P~~~~~~~l~Ynkdl~ 135 (405)
T 3i3v_A 113 EGRVRAFPYFATNWPVAYNRALL 135 (405)
T ss_dssp TSCBCSBCCEEEEECEEEEHHHH
T ss_pred CCcEEEEeccCceEEEEEeHHHH
Confidence 49999999999999999999876
No 60
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=97.12 E-value=0.00019 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++||+|+.+++.+|+||+|.|+
T Consensus 136 dGk~YgvP~~~~~~~l~YNkdl~~ 159 (661)
T 3osq_A 136 NGKLIAYPIAVEALSLIYNKDLLP 159 (661)
T ss_dssp TTEECSEEEEEECCEEEEETTTCS
T ss_pred CCEEEEEEEecCeEEEEEEhHHhc
Confidence 799999999999999999999884
No 61
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=96.93 E-value=0.00029 Score=40.33 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.3
Q ss_pred cEEEeeecccceEEEEeCCCCC
Q 041883 12 KIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 12 ~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.||+|+.+++.+|+||++.|+
T Consensus 102 ~~y~vP~~~~~~~l~ynkd~~~ 123 (333)
T 3pu5_A 102 EGCGSLYDYSSVGIAYRPDKIQ 123 (333)
T ss_dssp TTSCEECCBEEEEEEECTTTST
T ss_pred CCccceeEeeeeEEEEchhhcC
Confidence 5699999999999999999884
No 62
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=96.90 E-value=0.00046 Score=39.18 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=20.8
Q ss_pred CCCCcEEEeeecccceEEEEeCCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.+| |++|+.+++.+|+||++.|+
T Consensus 93 ~~~g--y~~P~~~~~~~l~ynk~~~~ 116 (312)
T 1xvx_A 93 PEHG--RWTGIAARSTVFVYNPEKIS 116 (312)
T ss_dssp CSSS--SCEEEEEEEEEEEECTTTSC
T ss_pred CCCC--eEEEEeccceEEEEEhhhcc
Confidence 3455 99999999999999999884
No 63
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=96.68 E-value=0.00038 Score=40.01 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.8
Q ss_pred cEEEeeecccceEEEEeCCCCC
Q 041883 12 KIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 12 ~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.||+||.+++++|+||++.|.
T Consensus 92 ~~y~~p~~~~~~~l~yn~~~~~ 113 (320)
T 4euo_A 92 TDYSVGSFYYSFVIGCNVDSVS 113 (320)
T ss_dssp BTTBEEEEEEEEEEEECGGGSS
T ss_pred ccceeeeeeeeEEEEEEhhhhC
Confidence 4699999999999999999874
No 64
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=96.64 E-value=0.00071 Score=39.14 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.0
Q ss_pred cEEEeeecccceEEEEeCCCCC
Q 041883 12 KIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 12 ~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.||+|+.+++.+|+||++.|+
T Consensus 117 ~~y~vP~~~~~~~l~YNkd~~~ 138 (330)
T 2qry_A 117 NDTFVPFDYGYFAFVYDKNKLK 138 (330)
T ss_dssp CSSCEEEEEEEEEEEEETTTCS
T ss_pred cCeEEEEeccceEEEEehhhcc
Confidence 4699999999999999999884
No 65
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=96.64 E-value=0.00073 Score=38.40 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=21.0
Q ss_pred CCCCcEEEeeecccceEEEEeCC-CCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKK-ASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~d-kf~ 33 (33)
+.+| |++|+.+++.+|+||++ .|+
T Consensus 94 ~~~g--~~~p~~~~~~~l~yNkd~~~~ 118 (323)
T 1y9u_A 94 GAEG--SWYALSLRDRVLYVEKDLKLD 118 (323)
T ss_dssp CGGG--SCEEEEEEEEEEEEETTCCCC
T ss_pred CCCC--eEEEEecceeEEEEcCccccC
Confidence 4567 89999999999999999 874
No 66
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=96.63 E-value=0.0018 Score=36.76 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.6
Q ss_pred CCCCcEEEeeecccceEEEEeCCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.+|++||+| +++.+|+||++.|+
T Consensus 90 ~~~G~~~~~~--~~~~~l~ynkd~~~ 113 (320)
T 1q35_A 90 DSNDQWFGLT--TRARVIYTSKDRVG 113 (320)
T ss_dssp CTTSSCEEEE--EEEEEEEEETTTTC
T ss_pred CCCCeEEeee--cceEEEEEehHHhh
Confidence 5689999888 47999999999884
No 67
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=96.54 E-value=0.00033 Score=41.64 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=20.7
Q ss_pred CCCCcEEEeee---cccceEEEEeCCCC
Q 041883 8 DPRDKIWAASH---RWGTVVIAYKKKAS 32 (33)
Q Consensus 8 d~~G~iwgvPy---rWG~t~IaYr~dkf 32 (33)
..||++||+|+ .+.+.++.||+|-|
T Consensus 119 ~~dGkiY~lP~~~~~~~~~~~~ynkd~l 146 (490)
T 3a09_A 119 APDGNIYYLPYVPDGLVSRGYFIRQDWL 146 (490)
T ss_dssp CTTSCBCCEEEECCCSCCEEEEEEHHHH
T ss_pred ccCCeEEEEEeecCCCcceEEEEEHHHH
Confidence 45899999998 46677899999865
No 68
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=96.35 E-value=0.0023 Score=36.07 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.7
Q ss_pred CCCCcEEEeeecccceEEEEeCCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.+| +++|+.+++.+|+||++.|+
T Consensus 90 ~~~g--~~~P~~~~~~~l~YNk~~~~ 113 (309)
T 1nnf_A 90 APKK--DWIALSGRSRVVVYDHTKLS 113 (309)
T ss_dssp CTTS--CCEEEEEEEEEEEEETTTCC
T ss_pred CCCC--eEEEeeeeEEEEEEehhhcc
Confidence 4567 58999999999999999884
No 69
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=96.32 E-value=0.00029 Score=39.82 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=20.3
Q ss_pred CCcEEEeeecccceEEEEeCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dk 31 (33)
+|++||+|+..++.+|+||+|.
T Consensus 128 ~g~~y~~P~~~~~~~l~ynkd~ 149 (351)
T 4edp_A 128 VEAGYGPAYTLNSIGIVVDPSA 149 (351)
T ss_dssp HHHTSSCEEEEEEEEEEECGGG
T ss_pred CCCeeEEEEEeeEEEEEEcCCC
Confidence 4899999999999999999983
No 70
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=96.26 E-value=0.00061 Score=41.91 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.8
Q ss_pred CCCCcEEEeee---cccceEEEEeCCCC
Q 041883 8 DPRDKIWAASH---RWGTVVIAYKKKAS 32 (33)
Q Consensus 8 d~~G~iwgvPy---rWG~t~IaYr~dkf 32 (33)
..||++||+|+ ...+.++.||+|-|
T Consensus 119 ~~dGk~Y~lP~~~~~~~~~~~~ynkd~l 146 (502)
T 3vlv_A 119 APDGNIYYLPYVPDGLVSRGYFIRQDWL 146 (502)
T ss_dssp CTTSCBCCEEEECCCSCCEEEEEEHHHH
T ss_pred CCCCCEEEeccccCCCcCcceEEeHHHH
Confidence 46899999999 67889999999865
No 71
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=96.23 E-value=0.00043 Score=42.69 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCCcEEEeeeccc------ceEEEEeCCCC
Q 041883 9 PRDKIWAASHRWG------TVVIAYKKKAS 32 (33)
Q Consensus 9 ~~G~iwgvPyrWG------~t~IaYr~dkf 32 (33)
.||++||+|+.++ +.++.||+|.|
T Consensus 145 ~dG~~Y~lP~~~~~~~~~~~~~l~ynkdll 174 (535)
T 3omb_A 145 SKGRIYAIADGRGKAYSGTGQHMLINKAWL 174 (535)
T ss_dssp TTSCCSSEEEECCGGGCSCSCEEEEEHHHH
T ss_pred CCCCEEEeecccCcCccccccceEeeHHHH
Confidence 6999999999954 58999999865
No 72
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=96.04 E-value=0.0048 Score=35.30 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred CCCCcEEEeeecccceEEEEeCCCCC
Q 041883 8 DPRDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+.+|+++ |+.+++.+|+||+|.|+
T Consensus 118 ~~~G~~~--p~~~~~~~l~YNkd~~~ 141 (346)
T 2voz_A 118 HPDGLWY--GFTQRARVLYYSRDRVN 141 (346)
T ss_dssp CTTSSCE--EEEEEEEEEEEETTTCC
T ss_pred CCCCcEE--eeeccceEEEEehhhcC
Confidence 5688874 78899999999999884
No 73
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=95.49 E-value=0.014 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=20.2
Q ss_pred ccCCCCcEEEeeecccceEEEEeCCC-CC
Q 041883 6 EIDPRDKIWAASHRWGTVVIAYKKKA-SH 33 (33)
Q Consensus 6 ~id~~G~iwgvPyrWG~t~IaYr~dk-f~ 33 (33)
..+++|+.++ +.+++.+|+||++. |+
T Consensus 89 ~~~~~g~~~~--~~~~~~~l~yn~~~~~~ 115 (322)
T 3e13_X 89 LRDKDKEWFA--ITKRARIIAYNKNTNID 115 (322)
T ss_dssp GBCTTSSCEE--EEEEEEEEEEETTSCCC
T ss_pred hCCCCCcEEE--eeceeEEEEECCccccC
Confidence 3467888755 45889999999998 74
No 74
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=92.41 E-value=0.096 Score=30.42 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.1
Q ss_pred CCcEEEeeecccceEEEEeCCCCC
Q 041883 10 RDKIWAASHRWGTVVIAYKKKASH 33 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~IaYr~dkf~ 33 (33)
+|++| |+..++++|+||++.|+
T Consensus 126 ~~~~~--~~~~~~~~l~YNk~~~~ 147 (355)
T 3c9h_A 126 RNTAY--ALTFEPAVFVYHKPSFT 147 (355)
T ss_dssp TTTEE--ECBCEEEEEEEEGGGCS
T ss_pred CCeEE--EEecCcEEEEEEHHhcC
Confidence 57776 56789999999999874
No 75
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=83.66 E-value=0.6 Score=26.12 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.8
Q ss_pred EeeecccceEEEEeCCC
Q 041883 15 AASHRWGTVVIAYKKKA 31 (33)
Q Consensus 15 gvPyrWG~t~IaYr~dk 31 (33)
++|| |++++|+||++.
T Consensus 90 ~~p~-~~~~~l~yn~~~ 105 (310)
T 1sbp_A 90 SAPY-TSTIVFLVRKGN 105 (310)
T ss_dssp HCSE-EBCEEEEEETTC
T ss_pred CCce-eEEEEEEEeCCC
Confidence 4788 899999999975
No 76
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=82.64 E-value=0.59 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=16.3
Q ss_pred EEeeecccceEEEEeCCC
Q 041883 14 WAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 14 wgvPyrWG~t~IaYr~dk 31 (33)
|.+||.|+.++|+||++.
T Consensus 83 ~~~~~~~~~~vi~~~~~~ 100 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKS 100 (296)
T ss_dssp CCEEEEECCEEEEECTTS
T ss_pred cceecccccEEEEEcCCC
Confidence 678999999999999874
No 77
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=80.16 E-value=0.3 Score=27.25 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=7.8
Q ss_pred Eeeecccce
Q 041883 15 AASHRWGTV 23 (33)
Q Consensus 15 gvPyrWG~t 23 (33)
|+||+||.+
T Consensus 18 G~PY~wGG~ 26 (135)
T 2k1g_A 18 GVRYRLGGS 26 (135)
T ss_dssp TCCCCSSCC
T ss_pred CCCccCCCc
Confidence 789999975
No 78
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=77.98 E-value=1.3 Score=25.29 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=16.4
Q ss_pred EEeeecccceEEEEeCCC
Q 041883 14 WAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 14 wgvPyrWG~t~IaYr~dk 31 (33)
|.+||.|+.++|+|+++.
T Consensus 78 ~~~~~~~~~l~i~~~~~~ 95 (296)
T 3cfx_A 78 WYAAFARNQMILAYTNES 95 (296)
T ss_dssp CEEEEEECCEEEEECTTS
T ss_pred ceeeeEeeeEEEEEeCCC
Confidence 789999999999999874
No 79
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=77.65 E-value=1.1 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=16.3
Q ss_pred EEeeecccceEEEEeCCC
Q 041883 14 WAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 14 wgvPyrWG~t~IaYr~dk 31 (33)
|.+||.|+.++|+|+++.
T Consensus 78 ~~~~~~~~~lvl~~~~~~ 95 (295)
T 3cij_A 78 WTIMFAKNQIVLAYRNDS 95 (295)
T ss_dssp CCEEEEECCEEEEECTTS
T ss_pred eeeEEEeeeEEEEEeCCC
Confidence 778999999999999874
No 80
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=73.96 E-value=0.74 Score=25.05 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=8.5
Q ss_pred EeeecccceE
Q 041883 15 AASHRWGTVV 24 (33)
Q Consensus 15 gvPyrWG~t~ 24 (33)
|+||+||.+.
T Consensus 18 G~pY~~Gg~~ 27 (136)
T 2jyx_A 18 GVRYRLGGST 27 (136)
T ss_dssp SCCBCTTCEE
T ss_pred CCCccCCCCC
Confidence 7899999864
No 81
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=73.94 E-value=0.2 Score=26.32 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=11.0
Q ss_pred CCCcEEEeeecccceEEE
Q 041883 9 PRDKIWAASHRWGTVVIA 26 (33)
Q Consensus 9 ~~G~iwgvPyrWG~t~Ia 26 (33)
+-||+ || .||+|+++
T Consensus 16 eyGKv--aP-GWGTtplM 30 (65)
T 3arc_H 16 EYGKV--AP-GWGTTPLM 30 (65)
T ss_dssp CTTCC--BS-TTTTHHHH
T ss_pred ccCcc--cC-CccChhHH
Confidence 35787 77 89998753
No 82
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1
Probab=68.84 E-value=2.2 Score=28.35 Aligned_cols=15 Identities=13% Similarity=0.698 Sum_probs=12.1
Q ss_pred cCCCCcEEEee-eccc
Q 041883 7 IDPRDKIWAAS-HRWG 21 (33)
Q Consensus 7 id~~G~iwgvP-yrWG 21 (33)
.+++|+.||-| |+|-
T Consensus 264 Fs~~GQ~WG~P~y~w~ 279 (505)
T 1tz7_A 264 FSKTGQLWGNPVYNWE 279 (505)
T ss_dssp SSSSCEEEEEECBCHH
T ss_pred CCcccCcCCCCCcCHH
Confidence 47889999998 6664
No 83
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=68.54 E-value=1 Score=24.67 Aligned_cols=8 Identities=13% Similarity=0.596 Sum_probs=6.9
Q ss_pred Eeeecccc
Q 041883 15 AASHRWGT 22 (33)
Q Consensus 15 gvPyrWG~ 22 (33)
|.||+||.
T Consensus 28 G~pY~wGG 35 (142)
T 3gt2_A 28 GVPFSWAG 35 (142)
T ss_dssp TCBBCTTC
T ss_pred CCCeeCCC
Confidence 68999986
No 84
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=66.48 E-value=3 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.614 Sum_probs=16.0
Q ss_pred EEeeecccceEEEEeCCC
Q 041883 14 WAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 14 wgvPyrWG~t~IaYr~dk 31 (33)
|-.||.++.++|+|+++.
T Consensus 78 ~~~~~~~~~lvi~~~~~~ 95 (292)
T 3cfz_A 78 WYVMFARNEIVLAYTDKS 95 (292)
T ss_dssp CCEEEEECCEEEEECTTS
T ss_pred ceeeeEeccEEEEEcCCC
Confidence 678999999999999874
No 85
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=61.40 E-value=2.1 Score=25.47 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=7.9
Q ss_pred Eeeecccce
Q 041883 15 AASHRWGTV 23 (33)
Q Consensus 15 gvPyrWG~t 23 (33)
|.||+||.+
T Consensus 168 G~pY~wGg~ 176 (306)
T 3npf_A 168 GIPYLWAGT 176 (306)
T ss_dssp TCBBCTTCE
T ss_pred CCceECCCc
Confidence 799999975
No 86
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=59.07 E-value=2.1 Score=25.93 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=8.3
Q ss_pred EeeecccceE
Q 041883 15 AASHRWGTVV 24 (33)
Q Consensus 15 gvPyrWG~t~ 24 (33)
|.||+||.+.
T Consensus 201 G~pY~wGg~~ 210 (311)
T 3h41_A 201 GLPYIWAGTS 210 (311)
T ss_dssp TCBCCTTCEE
T ss_pred CCCcCCCCCC
Confidence 7899999864
No 87
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=58.25 E-value=2 Score=25.54 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=7.8
Q ss_pred EEeeecccce
Q 041883 14 WAASHRWGTV 23 (33)
Q Consensus 14 wgvPyrWG~t 23 (33)
-|+||+||..
T Consensus 96 lG~PY~wGG~ 105 (214)
T 3pbi_A 96 MGVPYSWGGG 105 (214)
T ss_dssp TTCBBCTTCC
T ss_pred CCCCccCCCc
Confidence 3799999963
No 88
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=55.34 E-value=2.4 Score=27.43 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=7.5
Q ss_pred Eeeecccce
Q 041883 15 AASHRWGTV 23 (33)
Q Consensus 15 gvPyrWG~t 23 (33)
|+||+||.+
T Consensus 289 G~PY~wGG~ 297 (434)
T 3m1u_A 289 GQPYGWGGL 297 (434)
T ss_dssp TCBBCGGGG
T ss_pred CCCcccCCc
Confidence 679999975
No 89
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=55.01 E-value=2.5 Score=25.27 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=7.8
Q ss_pred EEeeecccce
Q 041883 14 WAASHRWGTV 23 (33)
Q Consensus 14 wgvPyrWG~t 23 (33)
-|+||+||-.
T Consensus 96 lG~PY~wGG~ 105 (214)
T 3ne0_A 96 IGVPYSWGGG 105 (214)
T ss_dssp TTCBBCTTCC
T ss_pred cCCCccCCCc
Confidence 3799999953
No 90
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=53.86 E-value=2.9 Score=25.48 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=13.6
Q ss_pred CCCCccCCCCcEEEee
Q 041883 2 NDAGEIDPRDKIWAAS 17 (33)
Q Consensus 2 ~~~G~id~~G~iwgvP 17 (33)
|.+|-+|++++|||++
T Consensus 472 d~~sVVD~~~rV~Gv~ 487 (526)
T 3t37_A 472 DPDAVVDANLRLKALD 487 (526)
T ss_dssp STTCSBCTTCBBTTCS
T ss_pred CCCccCCCCCEEcCCC
Confidence 4568899999999986
No 91
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=52.11 E-value=3 Score=24.83 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.8
Q ss_pred Eeeecccce
Q 041883 15 AASHRWGTV 23 (33)
Q Consensus 15 gvPyrWG~t 23 (33)
|.||+||.+
T Consensus 112 G~pY~wGG~ 120 (235)
T 2hbw_A 112 SNYYLWGGT 120 (235)
T ss_dssp CCCCCTTCC
T ss_pred CCCCCCCCc
Confidence 789999965
No 92
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=51.00 E-value=3.2 Score=25.43 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=8.2
Q ss_pred EeeecccceE
Q 041883 15 AASHRWGTVV 24 (33)
Q Consensus 15 gvPyrWG~t~ 24 (33)
|+||+||.+.
T Consensus 199 G~PY~~Gg~~ 208 (308)
T 4hpe_A 199 GWKYVYGGSN 208 (308)
T ss_dssp TCCCCTTCEE
T ss_pred CCCccCCCCC
Confidence 7899999853
No 93
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=49.02 E-value=3.7 Score=25.58 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=8.2
Q ss_pred EeeecccceE
Q 041883 15 AASHRWGTVV 24 (33)
Q Consensus 15 gvPyrWG~t~ 24 (33)
|+||+||...
T Consensus 203 G~PY~wGG~~ 212 (313)
T 4fdy_A 203 GFPYVFGGAS 212 (313)
T ss_dssp TCCBCTTCEE
T ss_pred CCccccCCCC
Confidence 7899999753
No 94
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=42.81 E-value=4 Score=21.63 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=10.4
Q ss_pred CCCcc--CCCCcEEEeeeccc
Q 041883 3 DAGEI--DPRDKIWAASHRWG 21 (33)
Q Consensus 3 ~~G~i--d~~G~iwgvPyrWG 21 (33)
.+|.+ |...++|++ |||-
T Consensus 51 ~~~lL~~Dek~~~W~i-y~~~ 70 (72)
T 3eyi_A 51 SRHLLDMDEQSKAWTI-YRWT 70 (72)
T ss_dssp HTTSEEECTTTCEEEE-C---
T ss_pred HccCcCCCCCCCceeE-EEee
Confidence 35555 555899987 8884
No 95
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=39.87 E-value=12 Score=19.60 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=11.3
Q ss_pred cEEEe-eecccceEEEEe
Q 041883 12 KIWAA-SHRWGTVVIAYK 28 (33)
Q Consensus 12 ~iwgv-PyrWG~t~IaYr 28 (33)
+|||+ |+.==.+.-|||
T Consensus 50 EVWg~~~f~pY~~~~AYR 67 (69)
T 2zdj_A 50 EVWGIDSFVPYNFLEAYR 67 (69)
T ss_dssp EEEEESSSSCCTTCEEEE
T ss_pred hhccccCcceehhhhhhh
Confidence 78998 554445556777
No 96
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=39.48 E-value=18 Score=18.51 Aligned_cols=18 Identities=17% Similarity=0.050 Sum_probs=15.4
Q ss_pred EEeeecccceEEEEeCCC
Q 041883 14 WAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 14 wgvPyrWG~t~IaYr~dk 31 (33)
...|+.++.++|+|+++.
T Consensus 73 ~~~~~~~~~~vlv~~~~~ 90 (231)
T 1atg_A 73 SRFTYAIGKLVLWSAKPG 90 (231)
T ss_dssp CCEEEEECCEEEEESSTT
T ss_pred ceeEeeeeeEEEEEcCCC
Confidence 458999999999999864
No 97
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=35.64 E-value=14 Score=15.44 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.0
Q ss_pred cceEEEEeCC
Q 041883 21 GTVVIAYKKK 30 (33)
Q Consensus 21 G~t~IaYr~d 30 (33)
|-|-|+|.++
T Consensus 2 GGTrIiYdR~ 11 (21)
T 3hxi_C 2 GSGRIIYDRK 11 (26)
T ss_pred CceEEEEeHH
Confidence 6688999875
No 98
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=35.43 E-value=38 Score=18.23 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=13.6
Q ss_pred cCCCCcEEEeeecccceEEEEeC
Q 041883 7 IDPRDKIWAASHRWGTVVIAYKK 29 (33)
Q Consensus 7 id~~G~iwgvPyrWG~t~IaYr~ 29 (33)
+|++|.+|.+= +..+..|+.
T Consensus 225 ~d~~G~l~v~~---~~~v~~~~~ 244 (296)
T 3e5z_A 225 VDAGGLIWASA---GDGVHVLTP 244 (296)
T ss_dssp EBTTSCEEEEE---TTEEEEECT
T ss_pred ECCCCCEEEEc---CCeEEEECC
Confidence 47889999776 445556654
No 99
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=33.96 E-value=18 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.5
Q ss_pred ccCCCCcEEEeee
Q 041883 6 EIDPRDKIWAASH 18 (33)
Q Consensus 6 ~id~~G~iwgvPy 18 (33)
.++++|+|+|.+.
T Consensus 65 ~m~~~G~v~Gs~~ 77 (143)
T 3snv_A 65 RINPDGTVDGTRD 77 (143)
T ss_dssp EECTTSBEEEECC
T ss_pred eECCCCCEeeccc
Confidence 3688999999875
No 100
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=33.55 E-value=19 Score=20.47 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.0
Q ss_pred cCCCCcEEEeeec
Q 041883 7 IDPRDKIWAASHR 19 (33)
Q Consensus 7 id~~G~iwgvPyr 19 (33)
+|+||.||++.+.
T Consensus 152 vd~dG~V~avg~~ 164 (175)
T 4aay_B 152 VADNGDIFAEGVD 164 (175)
T ss_dssp ECTTSEEEEEEES
T ss_pred EEcCCEEEEEEcc
Confidence 4678999998754
No 101
>3bpk_A Nitrilotriacetate monooxygenase component B; structural genomics, APC25244, PSI-2, protein structure initiative; 1.56A {Bacillus cereus atcc 14579}
Probab=29.19 E-value=43 Score=18.65 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=15.0
Q ss_pred CCCCcEEEeeecccceE
Q 041883 8 DPRDKIWAASHRWGTVV 24 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~ 24 (33)
+++|+.-|+|..|.+.+
T Consensus 37 ~~~g~~n~~t~s~~~~v 53 (206)
T 3bpk_A 37 TKEGVLNGAPYSYFNIV 53 (206)
T ss_dssp CTTCCEEEEEESSEEEE
T ss_pred CCCCCEEEEEeeeeecc
Confidence 57899999999999876
No 102
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=29.02 E-value=13 Score=23.57 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=13.2
Q ss_pred CCCCccCCCCcEEEee
Q 041883 2 NDAGEIDPRDKIWAAS 17 (33)
Q Consensus 2 ~~~G~id~~G~iwgvP 17 (33)
|..+-+|++++|||++
T Consensus 478 d~~~VVD~~lrV~Gv~ 493 (546)
T 2jbv_A 478 DEMSPLDPELRVKGVT 493 (546)
T ss_dssp CTTCSBCTTCBBTTSB
T ss_pred CCCceECCCCEEECCC
Confidence 3468899999999986
No 103
>2x8n_A CV0863; non-uniform sampling, multidimensional decomposition, abacus, fragment monte carlo, structural genomics; NMR {Chromobacterium violaceum atcc 12472}
Probab=28.91 E-value=25 Score=18.97 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=10.9
Q ss_pred CCCcEEEeeecc
Q 041883 9 PRDKIWAASHRW 20 (33)
Q Consensus 9 ~~G~iwgvPyrW 20 (33)
.||...++|+.|
T Consensus 44 ~dGr~l~~Pl~~ 55 (111)
T 2x8n_A 44 ANDRELKFRPDD 55 (111)
T ss_dssp TTCCEEEECTTT
T ss_pred CCCCEEEeeHHH
Confidence 589999999988
No 104
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=28.61 E-value=25 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.0
Q ss_pred ccCCCCcEEEeee
Q 041883 6 EIDPRDKIWAASH 18 (33)
Q Consensus 6 ~id~~G~iwgvPy 18 (33)
.++++|+|+|.+.
T Consensus 62 ~m~~~G~v~Gs~~ 74 (132)
T 3q7x_A 62 RINPDGTVDGTRD 74 (132)
T ss_dssp EECTTSBEEEECC
T ss_pred EECCCCCEeeccC
Confidence 3578899999864
No 105
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=28.57 E-value=15 Score=24.55 Aligned_cols=9 Identities=0% Similarity=0.010 Sum_probs=7.8
Q ss_pred EEEeeeccc
Q 041883 13 IWAASHRWG 21 (33)
Q Consensus 13 iwgvPyrWG 21 (33)
|||-||.|-
T Consensus 483 ~yg~py~~~ 491 (535)
T 3sql_A 483 FYGSPYFLE 491 (535)
T ss_dssp EEECCTTHH
T ss_pred EeCChhHHH
Confidence 899999984
No 106
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=28.55 E-value=25 Score=19.59 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.4
Q ss_pred ccCCCCcEEEeee
Q 041883 6 EIDPRDKIWAASH 18 (33)
Q Consensus 6 ~id~~G~iwgvPy 18 (33)
.++++|+|+|.+.
T Consensus 87 ~mn~~G~l~Gs~~ 99 (142)
T 3p6j_A 87 RINPDGTVDGTRD 99 (142)
T ss_dssp EECTTSBEEEECC
T ss_pred eECCCCCEeeccc
Confidence 3688999999865
No 107
>3k8r_A Uncharacterized protein; unknown function, structural genomics, joint center for STRU genomics, JCSG; 2.75A {Rhodospirillum rubrum atcc 11170}
Probab=28.21 E-value=27 Score=19.30 Aligned_cols=12 Identities=17% Similarity=0.100 Sum_probs=10.9
Q ss_pred CCCcEEEeeecc
Q 041883 9 PRDKIWAASHRW 20 (33)
Q Consensus 9 ~~G~iwgvPyrW 20 (33)
.||...++|+.|
T Consensus 44 ~dGr~l~~Pl~~ 55 (124)
T 3k8r_A 44 ENGCTFAFPPRL 55 (124)
T ss_dssp TTSCEEEECGGG
T ss_pred CCCCEEEecHHH
Confidence 589999999988
No 108
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=27.47 E-value=65 Score=17.08 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=16.2
Q ss_pred cCCCCcEEEeeecccceEEEEeCCC
Q 041883 7 IDPRDKIWAASHRWGTVVIAYKKKA 31 (33)
Q Consensus 7 id~~G~iwgvPyrWG~t~IaYr~dk 31 (33)
++++|++|.+- +...+.+|+-..
T Consensus 258 ~~~~g~l~vs~--~~~~v~v~~~~~ 280 (286)
T 1q7f_A 258 LMDDGSVVLAS--KDYRLYIYRYVQ 280 (286)
T ss_dssp EETTTEEEEEE--TTTEEEEEECSC
T ss_pred ECCCCcEEEEC--CCCeEEEEEccc
Confidence 46789999883 467777777543
No 109
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=25.57 E-value=16 Score=22.81 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.8
Q ss_pred CCCccCCCCcEEEee
Q 041883 3 DAGEIDPRDKIWAAS 17 (33)
Q Consensus 3 ~~G~id~~G~iwgvP 17 (33)
..+-+|++++|||++
T Consensus 492 ~~~VVD~~lrV~Gv~ 506 (546)
T 1kdg_A 492 QSAVVDSNVKVFGTN 506 (546)
T ss_dssp TTCSBCTTCBBTTCS
T ss_pred CCeeECCCCeEccCC
Confidence 457889999999985
No 110
>3fge_A Putative flavin reductase with split barrel domai; YP_750721.1; 1.74A {Shewanella frigidimarina ncimb 400}
Probab=25.15 E-value=56 Score=18.21 Aligned_cols=18 Identities=6% Similarity=-0.208 Sum_probs=14.9
Q ss_pred cCCCCcEEEeeecccceE
Q 041883 7 IDPRDKIWAASHRWGTVV 24 (33)
Q Consensus 7 id~~G~iwgvPyrWG~t~ 24 (33)
.+++|+.-|+|..|.+.+
T Consensus 36 ~~~~G~~n~~t~s~~~~v 53 (203)
T 3fge_A 36 QDRQGNTNLSIVSSVIHL 53 (203)
T ss_dssp ECTTCCEEEEEESCCEEE
T ss_pred eCCCCceeEEEeeeeehh
Confidence 367899999999998754
No 111
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=24.78 E-value=15 Score=21.59 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred CCcEEEeeecccceE
Q 041883 10 RDKIWAASHRWGTVV 24 (33)
Q Consensus 10 ~G~iwgvPyrWG~t~ 24 (33)
+|+|+|+|=.|||+.
T Consensus 11 ~~~i~gi~pG~g~~~ 25 (268)
T 2b4l_A 11 NKTIIGIDPGSGIMS 25 (268)
T ss_dssp TTEEECCCTTSHHHH
T ss_pred CCeEEecCCChhHHH
Confidence 699999999999874
No 112
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A
Probab=24.66 E-value=32 Score=19.38 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.5
Q ss_pred ccCCCCcEEEeee
Q 041883 6 EIDPRDKIWAASH 18 (33)
Q Consensus 6 ~id~~G~iwgvPy 18 (33)
.++++|+++|.+.
T Consensus 97 ~Mn~dG~l~Gs~~ 109 (142)
T 3p6i_A 97 RINPDGTVDGTRD 109 (142)
T ss_dssp EECTTSBEEEECC
T ss_pred eECCCCCCccccC
Confidence 3688999999875
No 113
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=24.48 E-value=43 Score=17.98 Aligned_cols=11 Identities=18% Similarity=0.803 Sum_probs=9.4
Q ss_pred cceEEEEeCCC
Q 041883 21 GTVVIAYKKKA 31 (33)
Q Consensus 21 G~t~IaYr~dk 31 (33)
|-+.+.||+++
T Consensus 78 G~~~VLYR~~~ 88 (104)
T 1rq8_A 78 GSMIVIYRESK 88 (104)
T ss_dssp TTEEEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 88999999874
No 114
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=23.79 E-value=88 Score=17.12 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=15.3
Q ss_pred cCCCCcEEEeeecccceEEEEeCC
Q 041883 7 IDPRDKIWAASHRWGTVVIAYKKK 30 (33)
Q Consensus 7 id~~G~iwgvPyrWG~t~IaYr~d 30 (33)
+|++|.+|-+=+. |..+..|+.+
T Consensus 206 ~d~~G~lwva~~~-~~~v~~~d~~ 228 (297)
T 3g4e_A 206 IDAEGKLWVACYN-GGRVIRLDPV 228 (297)
T ss_dssp EBTTSCEEEEEET-TTEEEEECTT
T ss_pred ECCCCCEEEEEcC-CCEEEEEcCC
Confidence 5788999987654 3446666654
No 115
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=22.55 E-value=56 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.1
Q ss_pred cCCCCc---EEE-----eeecccceEEEEeCCC
Q 041883 7 IDPRDK---IWA-----ASHRWGTVVIAYKKKA 31 (33)
Q Consensus 7 id~~G~---iwg-----vPyrWG~t~IaYr~dk 31 (33)
+|+||+ +|. .+.+.|.+.|||..|.
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg 196 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHS 196 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTT
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCC
Confidence 467775 355 4456788899998653
No 116
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=22.45 E-value=38 Score=19.08 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=14.2
Q ss_pred CCCCcEEEeeecccceE
Q 041883 8 DPRDKIWAASHRWGTVV 24 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t~ 24 (33)
+.|+-|++.|-.|+++.
T Consensus 58 ~AD~iv~~~P~y~~~~p 74 (192)
T 3f2v_A 58 THDSLVWQFPIYWFNCP 74 (192)
T ss_dssp TSSSEEEEEECBTTBCC
T ss_pred hCCEEEEEcChhhcCCC
Confidence 56889999999998763
No 117
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=21.19 E-value=10 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.582 Sum_probs=16.5
Q ss_pred CCCCccCCCCcEEEeeecccce
Q 041883 2 NDAGEIDPRDKIWAASHRWGTV 23 (33)
Q Consensus 2 ~~~G~id~~G~iwgvPyrWG~t 23 (33)
|.+|.+...|+||-||-. ||-
T Consensus 308 dadgkltttgevwevpak-gcw 328 (336)
T 2vov_A 308 DADGKLTTTGEVWEVPAK-GCW 328 (336)
T ss_dssp CTTCCEEEESCCCCSSSS-EEE
T ss_pred ccCCceeecceEEeccCC-ceE
Confidence 567888888999999975 443
No 118
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Probab=21.12 E-value=24 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.702 Sum_probs=11.3
Q ss_pred cCCCCcEEEee-eccc
Q 041883 7 IDPRDKIWAAS-HRWG 21 (33)
Q Consensus 7 id~~G~iwgvP-yrWG 21 (33)
.+++|+.||-| |+|-
T Consensus 251 Fs~~GQ~WG~P~y~w~ 266 (500)
T 1esw_A 251 FSETGQRWGNPLYRWD 266 (500)
T ss_dssp SCSSCEECCCCCBCHH
T ss_pred CCcccCCCCCCCcCHH
Confidence 46789999986 5653
No 119
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=20.64 E-value=34 Score=17.72 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.6
Q ss_pred CCCCcEEEeeecccce
Q 041883 8 DPRDKIWAASHRWGTV 23 (33)
Q Consensus 8 d~~G~iwgvPyrWG~t 23 (33)
+.|+-|+|.|-.||.+
T Consensus 71 ~aD~ii~~~P~y~~~~ 86 (184)
T 1rli_A 71 QCHILIFATPIYWFGM 86 (184)
T ss_dssp TCSEEEEEEECBTTBC
T ss_pred hCCEEEEEeCccccCC
Confidence 5688999999999875
Done!