BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041887
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
           Aminotransferase From Listeria Innocua Clip11262.
 pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
           Aminotransferase From Listeria Innocua Clip11262
          Length = 363

 Score = 34.3 bits (77), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 10/72 (13%)

Query: 53  IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
           I+  L +V       L +  I+ VT + ++HEKL+R++      KNL+++R++ +   L 
Sbjct: 177 IQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTY------KNLIITRTFSKIYGLA 230

Query: 112 ---VGNGLTEEE 120
              VG G+ ++E
Sbjct: 231 SARVGYGIADKE 242


>pdb|2R6P|E Chain E, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
           Resolution Cryoem Map Of Fab Complexed With Dengue 2
           Virus.
 pdb|2R6P|G Chain G, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
           Resolution Cryoem Map Of Fab Complexed With Dengue 2
           Virus
          Length = 206

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 21/117 (17%)

Query: 101 VSRSYCQKI----WLVGNGLTEEEQSKAERGTMFVPFSQFPPAKKRRKDCTYHLTPAMAT 156
           V+  YCQ+     W  G G   E     +R       S FPP+ ++       LT   A+
Sbjct: 87  VATYYCQQTNVDPWAFGGGTKLE----IKRADAAPTVSIFPPSSEQ-------LTSGGAS 135

Query: 157 PAALENVDSCENWLPRRVMSAWRIGGIVHALEGWNEHECGYTISNVDTVW-DAALRH 212
                N     N+ P+ +   W+I      L  W + +  Y++S+  T+  D   RH
Sbjct: 136 VVCFLN-----NFYPKDINVKWKIDRQNGVLNSWTDQDSTYSMSSTLTLTKDEYERH 187


>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
           P.69 Pertactin
          Length = 539

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 136 FPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIGGIVHALEGWNEHEC 195
            PP++   +D      PA   PAA+  + + E  L    ++  R  G V A++G   H  
Sbjct: 162 LPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAG-VAAMQGAVVHLQ 220

Query: 196 GYTISNVDTVWDAALRHGFV 215
             TI   D +   A+  G V
Sbjct: 221 RATIRRGDALAGGAVPGGAV 240


>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
 pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
          Length = 388

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 145 DCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIG---GIVHALEGWNEHECGYTISN 201
           D   HL+   A+P A E    C  +     M+ WR+G   G V  ++   + + G++ SN
Sbjct: 211 DDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQ-GHSTSN 269

Query: 202 VDT 204
           V T
Sbjct: 270 VCT 272


>pdb|2MHR|A Chain A, Structure Of Myohemerythrin In The Azidomet State At
           1.7(Slash)1.3 Angstroms Resolution
          Length = 118

 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 133 FSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRV 174
           +S+  P KK  KD    +   ++ P   +NVD C+ WL   +
Sbjct: 67  YSEVVPHKKMHKDFLEKIG-GLSAPVDAKNVDYCKEWLVNHI 107


>pdb|1A7D|A Chain A, Chloromet Myohemerythrin From Themiste Zostericola
          Length = 118

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 133 FSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRV 174
           +S+  P KK  KD    +   ++ P   +NVD C+ WL   +
Sbjct: 67  YSEVVPHKKMHKDFLEKIG-GLSAPVDAKNVDYCKEWLVNHI 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,814,412
Number of Sequences: 62578
Number of extensions: 265101
Number of successful extensions: 743
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 7
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)