BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041887
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4HVX7|CERL1_ARATH Protein CER1-like 1 OS=Arabidopsis thaliana GN=At1g02190 PE=2 SV=1
Length = 627
Score = 256 bits (655), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/214 (59%), Positives = 157/214 (73%), Gaps = 10/214 (4%)
Query: 9 EELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFAL 68
EELN G ++V K P+LKI++VDGSS+A V+ N+IP T++V RG LTKVA A FAL
Sbjct: 414 EELNGSGEMYVQKYPKLKIRLVDGSSMAATVVINNIPKEATEIVFRGNLTKVASAVVFAL 473
Query: 69 CQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRS---YCQKIWLVGNGLTEEEQSKAE 125
CQKG++VV LRE+EH KLI+S KNL++S S Y K+WLVG+G+ EEQ KA+
Sbjct: 474 CQKGVKVVVLREEEHSKLIKS----GVDKNLVLSTSNSYYSPKVWLVGDGIENEEQMKAK 529
Query: 126 RGTMFVPFSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIGGIVH 185
GT+FVPFS FPP K RKDC Y TPAM P + +N+DSCENWL RRVMSAW+IGGIVH
Sbjct: 530 EGTLFVPFSHFPP-NKLRKDCFYQSTPAMRVPKSAQNIDSCENWLGRRVMSAWKIGGIVH 588
Query: 186 ALEGWNEHECGYT--ISNVDTVWDAALRHGFVPL 217
ALEGW EH+CG T + + +W+AALRH F PL
Sbjct: 589 ALEGWEEHDCGNTCNVLRLHAIWEAALRHDFQPL 622
>sp|F4IR05|CERL2_ARATH Protein CER1-like 2 OS=Arabidopsis thaliana GN=At2g37700 PE=2 SV=1
Length = 613
Score = 250 bits (638), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 157/218 (72%), Gaps = 14/218 (6%)
Query: 7 QGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAF 66
QGEELN YG ++V ++P+LKI++VDG SLA V+ +SIP GT +V+ RG +TKVA A F
Sbjct: 404 QGEELNGYGEMYVRRHPKLKIRIVDGGSLAAEVVLHSIPVGTKEVLFRGQITKVARAIVF 463
Query: 67 ALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAER 126
+LCQ I+V+ LR++EH L K + +NL IWLVG+GL+ +EQ A+
Sbjct: 464 SLCQNAIKVMVLRKEEHSMLAEFLDDKCK-ENL---------IWLVGDGLSTKEQKMAKD 513
Query: 127 GTMFVPFSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIGGIVHA 186
GT+F+PFSQFPP K RKDC YH TPAM P + +N+DSCENWL RRVMSAWR+GGIVHA
Sbjct: 514 GTLFLPFSQFPP-KTLRKDCFYHTTPAMIIPHSAQNIDSCENWLGRRVMSAWRVGGIVHA 572
Query: 187 LEGWNEHECGY---TISNVDTVWDAALRHGFVPLTIPT 221
LEGW EHECG +I N VW+AALR+GF PL +P+
Sbjct: 573 LEGWKEHECGLDDNSIINPPRVWEAALRNGFQPLLLPS 610
>sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
Length = 625
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 158/219 (72%), Gaps = 7/219 (3%)
Query: 7 QGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAF 66
QGEELNR G +++H +P++K+++VDGS LA AV+ NS+P TT VV+ G LTKVAY A
Sbjct: 407 QGEELNRNGEVYIHNHPDMKVRLVDGSRLAAAVVINSVPKATTSVVMTGNLTKVAYTIAS 466
Query: 67 ALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYC---QKIWLVGNGLTEEEQSK 123
ALCQ+G+QV TLR DE+EK IRS + +L+ S K+WLVG G T EEQ K
Sbjct: 467 ALCQRGVQVSTLRLDEYEK-IRSCVPQECRDHLVYLTSEALSSNKVWLVGEGTTREEQEK 525
Query: 124 AERGTMFVPFSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIGGI 183
A +GT+F+PFSQF P K+ R+DC YH TPA+ P +L NV SCENWLPR+ MSA R+ GI
Sbjct: 526 ATKGTLFIPFSQF-PLKQLRRDCIYHTTPALIVPKSLVNVHSCENWLPRKAMSATRVAGI 584
Query: 184 VHALEGWNEHECGYT--ISNVDTVWDAALRHGFVPLTIP 220
+HALEGW HECG + +S++D VW+A L HGF PL +P
Sbjct: 585 LHALEGWEMHECGTSLLLSDLDQVWEACLSHGFQPLLLP 623
>sp|Q8H1Z0|CER3_ARATH Protein ECERIFERUM 3 OS=Arabidopsis thaliana GN=CER3 PE=1 SV=1
Length = 632
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 123/216 (56%), Gaps = 13/216 (6%)
Query: 7 QGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAF 66
+ E LN G LFV+K+P+L+++VV G++L AV+ IP +V + G +K+ A A
Sbjct: 412 KNEALNGGGTLFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATSKLGRAIAL 471
Query: 67 ALCQKGIQV--VTLREDEHEKLIRSFGGKSESKNLLV------SRSYCQKIWLVGNGLTE 118
LC++G++V +TL + +K+ + E +N LV + +C K W+VG LT
Sbjct: 472 YLCRRGVRVLMLTLSMERFQKIQKE--APVEFQNNLVQVTKYNAAQHC-KTWIVGKWLTP 528
Query: 119 EEQSKAERGTMFVPFSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAW 178
EQS A GT F F PP K R++CTY AM P +E + +CE + R V+ A
Sbjct: 529 REQSWAPAGTHFHQFV-VPPILKFRRNCTYGDLAAMKLPKDVEGLGTCEYTMERGVVHAC 587
Query: 179 RIGGIVHALEGWNEHECG-YTISNVDTVWDAALRHG 213
GG+VH LEGW HE G + +D VW+AA+++G
Sbjct: 588 HAGGVVHMLEGWKHHEVGAIDVDRIDLVWEAAMKYG 623
>sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=hisC PE=3
SV=1
Length = 360
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L KV L + I+ VT + +HEKLIR++ KNL+++R++ + L
Sbjct: 174 IQAFLDKVPSDILVVLDEAYIEYVTPQPKKHEKLIRTY------KNLIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEEE 120
VG G+ ++E
Sbjct: 228 SARVGYGIADKE 239
>sp|A0AK37|HIS8_LISW6 Histidinol-phosphate aminotransferase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=hisC PE=3 SV=1
Length = 360
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L KV L + I+ VT + ++HEKLIR++ KN++++R++ + L
Sbjct: 174 IQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTY------KNVIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEEE 120
VG G+ ++E
Sbjct: 228 SARVGYGIADKE 239
>sp|C1KWM5|HIS8_LISMC Histidinol-phosphate aminotransferase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=hisC PE=3 SV=1
Length = 360
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L KV L + I+ VT + ++HEKLIR++ KNL+++R++ + L
Sbjct: 174 IQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTY------KNLIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEE 119
VG G+ ++
Sbjct: 228 SARVGYGIADK 238
>sp|Q71Y90|HIS8_LISMF Histidinol-phosphate aminotransferase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=hisC PE=3 SV=1
Length = 360
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L KV L + I+ VT + ++HEKLIR++ KNL+++R++ + L
Sbjct: 174 IQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTY------KNLIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEE 119
VG G+ ++
Sbjct: 228 SARVGYGIADK 238
>sp|Q92A83|HIS8_LISIN Histidinol-phosphate aminotransferase OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=hisC PE=1 SV=1
Length = 360
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L +V L + I+ VT + ++HEKL+R++ KNL+++R++ + L
Sbjct: 174 IQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTY------KNLIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEEE 120
VG G+ ++E
Sbjct: 228 SARVGYGIADKE 239
>sp|B2A5W5|DNLJ_NATTJ DNA ligase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=ligA PE=3 SV=1
Length = 663
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 124 AERGTMFVPFS----------QFPPAKKRRKDCTYHLTPAMATPAALENVDS-CENWLPR 172
A+R F P+S A K KD + + P + +E V S CE W +
Sbjct: 213 AKRDLDFFPYSVPYIRGENLDSHYSAVKELKDLGFKINPYIRKFETMEEVISYCEEWQEK 272
Query: 173 RVMSAWRIGGIVHALEGWN-EHECGYTISN 201
R + I G+V L +N + + G T N
Sbjct: 273 RTKLPYEIDGVVIKLNDYNLQQQLGATSKN 302
>sp|Q8YQL2|CARB_NOSS1 Carbamoyl-phosphate synthase large chain OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=carB PE=3 SV=1
Length = 1104
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MEIINYQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKV 60
MEI+ Y EL RY V PE I + A+ V ++I D T +VVI GI+ +
Sbjct: 749 MEIV-YSDTELERYMTFAVQVEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIMEHI 807
Query: 61 AYA 63
A
Sbjct: 808 EQA 810
>sp|Q1RKF9|DPO3A_RICBR DNA polymerase III subunit alpha OS=Rickettsia bellii (strain
RML369-C) GN=dnaE PE=3 SV=1
Length = 1172
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 16 GLFVHKNPELKIKVVDG--SSLAVAVLTNSIPDGTTQVVIRGILTK 59
GLF+ +P + K + + L+ A L N++PDGT +V+I G++ K
Sbjct: 978 GLFISNHPLTEYKEIFNRLNILSSADLHNNLPDGTNRVMIAGVIQK 1023
>sp|B8DC01|HIS8_LISMH Histidinol-phosphate aminotransferase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=hisC PE=3 SV=1
Length = 360
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 53 IRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL- 111
I+ L KV L + I+ VT + ++HE LIR++ KNL+++R++ + L
Sbjct: 174 IQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEHLIRTY------KNLIITRTFSKIYGLA 227
Query: 112 ---VGNGLTEE 119
VG G+ ++
Sbjct: 228 SARVGYGIADK 238
>sp|Q1I0U6|VP6_MPRVN Uncharacterized protein VP6 OS=Micromonas pusilla reovirus (isolate
Netherlands/2005) GN=S6 PE=4 SV=1
Length = 521
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 13 RYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKG 72
RYGG H N + + + + ++P T+Q + G T +C+K
Sbjct: 162 RYGGNLTHVNVNTRSSASVQDDIPIVLTVMNLPGKTSQAYVVGDDT----VNLKLICRKS 217
Query: 73 IQVVTLREDEHEKLIRSFGGKSESK 97
V + D+ E +R+F K+E++
Sbjct: 218 TSVYNMNPDDEE--MRTFENKTETR 240
>sp|Q55756|CARB_SYNY3 Carbamoyl-phosphate synthase large chain OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=carB PE=3 SV=2
Length = 1081
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MEIINYQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKV 60
MEI+ Y EEL RY V P+ I + A+ V +S+ D T +VVI I+ +
Sbjct: 732 MEIV-YSDEELERYMTYAVQIEPDHPILIDKFLENAIEVDVDSLTDSTGKVVIGSIMEHI 790
Query: 61 AYA 63
A
Sbjct: 791 EEA 793
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,933,323
Number of Sequences: 539616
Number of extensions: 3301478
Number of successful extensions: 7561
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7546
Number of HSP's gapped (non-prelim): 18
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)