Query 041887
Match_columns 223
No_of_seqs 73 out of 75
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 11:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 9E-110 2E-114 803.1 14.3 216 4-220 404-619 (620)
2 PF12076 Wax2_C: WAX2 C-termin 100.0 6.4E-98 1E-102 626.3 11.0 164 51-216 1-164 (164)
3 PRK14982 acyl-ACP reductase; P 98.8 2E-08 4.3E-13 92.9 8.7 192 21-219 116-339 (340)
4 PRK05867 short chain dehydroge 95.2 0.11 2.5E-06 43.2 7.8 43 47-89 8-52 (253)
5 PRK06924 short chain dehydroge 95.1 0.064 1.4E-06 44.3 6.1 31 49-79 2-32 (251)
6 PRK07454 short chain dehydroge 95.1 0.12 2.5E-06 42.6 7.6 32 48-79 6-37 (241)
7 PF13460 NAD_binding_10: NADH( 95.1 0.1 2.3E-06 41.2 7.0 69 51-138 1-70 (183)
8 PRK12825 fabG 3-ketoacyl-(acyl 94.7 0.13 2.8E-06 41.5 6.9 29 49-77 7-35 (249)
9 PRK12429 3-hydroxybutyrate deh 94.7 0.13 2.9E-06 42.2 6.9 30 49-78 5-34 (258)
10 TIGR01963 PHB_DH 3-hydroxybuty 94.5 0.15 3.2E-06 41.9 6.8 30 49-78 2-31 (255)
11 PRK07523 gluconate 5-dehydroge 94.5 0.21 4.6E-06 41.6 7.8 33 48-80 10-42 (255)
12 cd01078 NAD_bind_H4MPT_DH NADP 94.5 0.015 3.3E-07 48.0 0.9 49 31-79 2-59 (194)
13 PRK06482 short chain dehydroge 94.4 0.11 2.4E-06 43.8 6.1 42 48-89 2-45 (276)
14 PRK07890 short chain dehydroge 94.4 0.14 3.1E-06 42.3 6.5 31 49-79 6-36 (258)
15 PRK05653 fabG 3-ketoacyl-(acyl 94.4 0.18 4E-06 40.7 7.0 32 49-80 6-37 (246)
16 PRK05557 fabG 3-ketoacyl-(acyl 94.3 0.24 5.2E-06 40.1 7.6 29 49-77 6-34 (248)
17 PRK06949 short chain dehydroge 94.3 0.23 5.1E-06 41.0 7.5 46 44-89 5-52 (258)
18 PRK07478 short chain dehydroge 94.3 0.18 3.9E-06 41.9 6.9 41 49-89 7-49 (254)
19 COG4221 Short-chain alcohol de 94.2 0.097 2.1E-06 47.6 5.4 44 49-92 7-52 (246)
20 PRK06124 gluconate 5-dehydroge 94.1 0.25 5.5E-06 41.0 7.5 37 43-79 6-42 (256)
21 PRK08063 enoyl-(acyl carrier p 94.1 0.27 5.9E-06 40.4 7.5 29 49-77 5-33 (250)
22 KOG1014 17 beta-hydroxysteroid 94.0 0.077 1.7E-06 49.7 4.6 45 49-93 50-96 (312)
23 COG5322 Predicted dehydrogenas 94.0 0.14 3.1E-06 48.2 6.4 179 27-217 137-350 (351)
24 TIGR01832 kduD 2-deoxy-D-gluco 93.9 0.12 2.7E-06 42.5 5.2 33 48-80 5-37 (248)
25 PRK12826 3-ketoacyl-(acyl-carr 93.8 0.28 6E-06 40.0 7.1 32 49-80 7-38 (251)
26 PRK08265 short chain dehydroge 93.8 0.15 3.3E-06 43.0 5.7 31 49-79 7-37 (261)
27 PRK06947 glucose-1-dehydrogena 93.6 0.29 6.3E-06 40.3 6.9 29 49-77 3-31 (248)
28 PRK06194 hypothetical protein; 93.6 0.3 6.6E-06 41.3 7.2 30 49-78 7-36 (287)
29 PRK09186 flagellin modificatio 93.5 0.18 4E-06 41.6 5.6 30 49-78 5-34 (256)
30 PRK12481 2-deoxy-D-gluconate 3 93.5 0.26 5.7E-06 41.5 6.5 31 49-79 9-39 (251)
31 PRK06935 2-deoxy-D-gluconate 3 93.4 0.27 5.9E-06 41.1 6.5 32 47-78 14-45 (258)
32 PRK09291 short chain dehydroge 93.3 0.44 9.4E-06 39.4 7.5 30 49-78 3-32 (257)
33 COG0300 DltE Short-chain dehyd 93.3 0.21 4.6E-06 45.4 6.1 47 47-93 5-53 (265)
34 PRK08643 acetoin reductase; Va 93.2 0.36 7.8E-06 40.1 6.9 31 49-79 3-33 (256)
35 PRK08085 gluconate 5-dehydroge 93.2 0.41 8.8E-06 39.8 7.2 33 47-79 8-40 (254)
36 PRK07063 short chain dehydroge 93.2 0.22 4.8E-06 41.5 5.7 42 49-90 8-51 (260)
37 PRK12939 short chain dehydroge 93.1 0.4 8.7E-06 39.2 7.0 32 48-79 7-38 (250)
38 PRK07577 short chain dehydroge 93.1 0.12 2.5E-06 42.1 3.8 31 49-79 4-34 (234)
39 PRK07774 short chain dehydroge 93.1 0.41 8.8E-06 39.4 7.0 32 49-80 7-38 (250)
40 PRK06196 oxidoreductase; Provi 93.0 0.27 5.8E-06 43.1 6.1 39 40-78 18-56 (315)
41 PRK08213 gluconate 5-dehydroge 93.0 0.45 9.7E-06 39.7 7.2 29 49-77 13-41 (259)
42 PRK05854 short chain dehydroge 93.0 0.23 4.9E-06 43.9 5.7 29 49-77 15-43 (313)
43 PRK06841 short chain dehydroge 93.0 0.14 3E-06 42.4 4.1 33 48-80 15-47 (255)
44 KOG1208 Dehydrogenases with di 93.0 0.3 6.5E-06 44.9 6.7 55 35-89 22-78 (314)
45 PRK05993 short chain dehydroge 92.9 0.24 5.2E-06 42.3 5.6 30 49-78 5-34 (277)
46 PRK08264 short chain dehydroge 92.9 0.14 2.9E-06 42.0 3.9 31 49-79 7-38 (238)
47 PRK06179 short chain dehydroge 92.8 0.15 3.2E-06 42.8 4.1 31 49-79 5-35 (270)
48 PRK08340 glucose-1-dehydrogena 92.7 0.27 5.9E-06 41.2 5.6 30 50-79 2-31 (259)
49 PRK07097 gluconate 5-dehydroge 92.7 0.54 1.2E-05 39.6 7.3 37 42-78 4-40 (265)
50 PLN02780 ketoreductase/ oxidor 92.5 0.28 6.1E-06 43.9 5.7 41 49-89 54-96 (320)
51 PRK07109 short chain dehydroge 92.5 0.44 9.5E-06 42.8 6.9 31 48-78 8-38 (334)
52 PRK06182 short chain dehydroge 92.5 0.3 6.6E-06 41.3 5.6 30 49-78 4-33 (273)
53 PRK07806 short chain dehydroge 92.5 0.49 1.1E-05 39.0 6.6 30 49-78 7-36 (248)
54 PRK08177 short chain dehydroge 92.4 0.18 3.9E-06 41.4 4.0 31 49-79 2-32 (225)
55 PRK12742 oxidoreductase; Provi 92.4 0.36 7.7E-06 39.4 5.7 41 48-88 6-49 (237)
56 PRK07825 short chain dehydroge 92.3 0.36 7.7E-06 40.7 5.8 30 49-78 6-35 (273)
57 PRK07062 short chain dehydroge 92.3 0.34 7.3E-06 40.6 5.6 31 48-78 8-38 (265)
58 PRK05884 short chain dehydroge 92.3 0.33 7.3E-06 40.4 5.5 29 50-78 2-30 (223)
59 TIGR02415 23BDH acetoin reduct 92.3 0.63 1.4E-05 38.4 7.0 31 49-79 1-31 (254)
60 TIGR03325 BphB_TodD cis-2,3-di 92.2 0.35 7.6E-06 40.6 5.6 31 48-78 5-35 (262)
61 PLN02662 cinnamyl-alcohol dehy 92.2 0.38 8.3E-06 41.3 5.9 29 49-77 5-33 (322)
62 PRK05876 short chain dehydroge 92.2 0.61 1.3E-05 40.2 7.2 30 49-78 7-36 (275)
63 PRK06077 fabG 3-ketoacyl-(acyl 92.2 0.26 5.6E-06 40.5 4.7 29 49-77 7-35 (252)
64 PRK06483 dihydromonapterin red 92.2 0.26 5.6E-06 40.6 4.7 31 49-79 3-33 (236)
65 PRK06180 short chain dehydroge 92.1 0.36 7.7E-06 41.2 5.6 31 49-79 5-35 (277)
66 PRK08589 short chain dehydroge 92.0 0.27 5.9E-06 41.9 4.8 31 49-79 7-37 (272)
67 PRK12827 short chain dehydroge 92.0 0.69 1.5E-05 37.7 6.9 29 49-77 7-35 (249)
68 PRK06197 short chain dehydroge 92.0 0.24 5.2E-06 42.9 4.5 36 43-78 10-46 (306)
69 PRK08993 2-deoxy-D-gluconate 3 92.0 0.38 8.2E-06 40.3 5.6 37 41-77 3-39 (253)
70 PRK12824 acetoacetyl-CoA reduc 92.0 0.3 6.6E-06 39.8 4.8 32 49-80 3-34 (245)
71 PRK12823 benD 1,6-dihydroxycyc 92.0 0.62 1.3E-05 38.8 6.7 32 49-80 9-40 (260)
72 PLN02986 cinnamyl-alcohol dehy 91.9 0.49 1.1E-05 41.1 6.3 29 49-77 6-34 (322)
73 PRK07856 short chain dehydroge 91.9 0.23 5E-06 41.4 4.1 33 48-80 6-38 (252)
74 PRK06398 aldose dehydrogenase; 91.9 0.21 4.5E-06 42.3 3.9 30 49-78 7-36 (258)
75 PRK09135 pteridine reductase; 91.9 0.4 8.7E-06 39.1 5.4 31 48-78 6-36 (249)
76 PRK12829 short chain dehydroge 91.8 0.42 9.1E-06 39.5 5.6 31 49-79 12-42 (264)
77 PRK05650 short chain dehydroge 91.8 0.71 1.5E-05 39.0 7.0 28 50-77 2-29 (270)
78 PF00106 adh_short: short chai 91.7 0.55 1.2E-05 36.2 5.8 43 49-91 1-48 (167)
79 PRK06200 2,3-dihydroxy-2,3-dih 91.7 0.52 1.1E-05 39.5 6.0 42 49-90 7-50 (263)
80 PRK05717 oxidoreductase; Valid 91.7 0.59 1.3E-05 39.0 6.3 36 43-78 5-40 (255)
81 PRK07102 short chain dehydroge 91.6 0.26 5.7E-06 40.7 4.1 31 49-79 2-32 (243)
82 CHL00194 ycf39 Ycf39; Provisio 91.6 0.75 1.6E-05 40.4 7.2 29 50-78 2-30 (317)
83 PRK07231 fabG 3-ketoacyl-(acyl 91.6 0.49 1.1E-05 38.7 5.6 31 49-79 6-36 (251)
84 PRK08339 short chain dehydroge 91.5 0.46 1E-05 40.5 5.6 30 49-78 9-38 (263)
85 PRK07024 short chain dehydroge 91.5 0.57 1.2E-05 39.3 6.1 31 49-79 3-33 (257)
86 PRK06523 short chain dehydroge 91.5 0.24 5.3E-06 41.2 3.9 32 48-79 9-40 (260)
87 PRK05786 fabG 3-ketoacyl-(acyl 91.4 0.53 1.1E-05 38.4 5.7 30 49-78 6-35 (238)
88 PRK06500 short chain dehydroge 91.3 0.54 1.2E-05 38.5 5.7 31 49-79 7-37 (249)
89 PRK05872 short chain dehydroge 91.3 0.68 1.5E-05 40.3 6.5 43 48-90 9-53 (296)
90 PRK06101 short chain dehydroge 91.2 0.54 1.2E-05 39.1 5.6 31 49-79 2-32 (240)
91 PRK08017 oxidoreductase; Provi 91.2 0.53 1.2E-05 38.8 5.5 30 49-78 3-32 (256)
92 PRK08936 glucose-1-dehydrogena 91.1 0.94 2E-05 37.9 7.0 30 48-77 7-36 (261)
93 PRK05866 short chain dehydroge 91.1 0.54 1.2E-05 41.1 5.7 30 49-78 41-70 (293)
94 PRK08226 short chain dehydroge 91.0 0.83 1.8E-05 38.1 6.6 32 49-80 7-38 (263)
95 TIGR01746 Thioester-redct thio 91.0 0.34 7.3E-06 41.5 4.3 27 51-77 2-30 (367)
96 PRK08277 D-mannonate oxidoredu 90.9 1 2.2E-05 38.1 7.1 31 49-79 11-41 (278)
97 PRK08220 2,3-dihydroxybenzoate 90.7 0.38 8.1E-06 39.6 4.2 34 48-81 8-41 (252)
98 PRK13394 3-hydroxybutyrate deh 90.7 1.2 2.5E-05 36.8 7.1 31 49-79 8-38 (262)
99 PRK07023 short chain dehydroge 90.7 0.36 7.8E-06 39.9 4.1 30 49-78 2-31 (243)
100 PRK08267 short chain dehydroge 90.6 0.69 1.5E-05 38.6 5.7 31 49-79 2-32 (260)
101 PRK07326 short chain dehydroge 90.5 0.71 1.5E-05 37.7 5.6 32 49-80 7-38 (237)
102 PRK06057 short chain dehydroge 90.5 0.71 1.5E-05 38.5 5.7 30 49-78 8-37 (255)
103 PRK08251 short chain dehydroge 90.4 0.74 1.6E-05 37.9 5.7 29 49-77 3-31 (248)
104 PRK12384 sorbitol-6-phosphate 90.4 0.72 1.6E-05 38.4 5.7 31 49-79 3-33 (259)
105 PRK08945 putative oxoacyl-(acy 90.4 0.6 1.3E-05 38.7 5.2 33 47-79 11-43 (247)
106 PRK06914 short chain dehydroge 90.4 0.7 1.5E-05 39.0 5.7 30 49-78 4-33 (280)
107 PRK12937 short chain dehydroge 90.3 0.77 1.7E-05 37.5 5.7 29 49-77 6-34 (245)
108 PRK07814 short chain dehydroge 90.3 1.5 3.2E-05 37.1 7.5 32 48-79 10-41 (263)
109 PRK07060 short chain dehydroge 90.3 0.97 2.1E-05 37.0 6.3 33 47-79 8-40 (245)
110 PRK09134 short chain dehydroge 90.3 1.2 2.5E-05 37.3 6.8 30 48-77 9-38 (258)
111 PRK06079 enoyl-(acyl carrier p 90.3 0.51 1.1E-05 39.9 4.7 31 49-79 8-40 (252)
112 PLN02253 xanthoxin dehydrogena 90.2 0.74 1.6E-05 39.0 5.7 31 49-79 19-49 (280)
113 TIGR03206 benzo_BadH 2-hydroxy 90.2 0.8 1.7E-05 37.5 5.7 30 49-78 4-33 (250)
114 PRK07677 short chain dehydroge 90.2 0.75 1.6E-05 38.3 5.6 31 49-79 2-32 (252)
115 PRK06953 short chain dehydroge 90.2 0.68 1.5E-05 38.0 5.2 30 49-78 2-31 (222)
116 PRK08263 short chain dehydroge 90.1 0.86 1.9E-05 38.7 6.0 30 49-78 4-33 (275)
117 PRK08862 short chain dehydroge 90.1 0.75 1.6E-05 38.8 5.6 30 49-78 6-35 (227)
118 PRK07985 oxidoreductase; Provi 90.1 0.41 8.8E-06 41.8 4.1 30 49-78 50-79 (294)
119 PRK12938 acetyacetyl-CoA reduc 90.0 0.48 1E-05 39.0 4.2 29 49-77 4-32 (246)
120 PRK08416 7-alpha-hydroxysteroi 89.9 0.58 1.3E-05 39.4 4.8 30 49-78 9-38 (260)
121 PRK07069 short chain dehydroge 89.9 0.47 1E-05 38.9 4.1 29 51-79 2-30 (251)
122 PRK09072 short chain dehydroge 89.9 0.84 1.8E-05 38.3 5.7 31 49-79 6-36 (263)
123 PRK05565 fabG 3-ketoacyl-(acyl 89.8 0.5 1.1E-05 38.4 4.2 30 49-78 6-35 (247)
124 PRK06463 fabG 3-ketoacyl-(acyl 89.8 0.8 1.7E-05 38.2 5.5 29 49-77 8-36 (255)
125 PRK12745 3-ketoacyl-(acyl-carr 89.8 0.59 1.3E-05 38.6 4.6 30 49-78 3-32 (256)
126 PRK06114 short chain dehydroge 89.7 0.54 1.2E-05 39.3 4.4 30 49-78 9-38 (254)
127 PRK07067 sorbitol dehydrogenas 89.7 0.89 1.9E-05 37.9 5.7 30 49-78 7-36 (257)
128 PRK12936 3-ketoacyl-(acyl-carr 89.7 0.65 1.4E-05 37.8 4.7 29 49-77 7-35 (245)
129 PRK08703 short chain dehydroge 89.6 0.88 1.9E-05 37.5 5.6 30 49-78 7-36 (239)
130 PRK07074 short chain dehydroge 89.6 0.93 2E-05 37.7 5.7 31 49-79 3-33 (257)
131 PRK07889 enoyl-(acyl carrier p 89.6 0.92 2E-05 38.5 5.8 31 49-79 8-40 (256)
132 PRK12828 short chain dehydroge 89.6 0.5 1.1E-05 38.1 3.9 32 49-80 8-39 (239)
133 PRK10538 malonic semialdehyde 89.5 1 2.2E-05 37.5 5.9 29 50-78 2-30 (248)
134 PRK05875 short chain dehydroge 89.5 0.92 2E-05 38.2 5.7 32 48-79 7-38 (276)
135 PRK07035 short chain dehydroge 89.4 1 2.2E-05 37.4 5.7 31 49-79 9-39 (252)
136 PRK07576 short chain dehydroge 89.4 1.5 3.2E-05 37.3 6.8 32 48-79 9-40 (264)
137 TIGR01831 fabG_rel 3-oxoacyl-( 89.3 0.51 1.1E-05 38.6 3.9 28 51-78 1-28 (239)
138 PRK06125 short chain dehydroge 89.3 0.99 2.1E-05 37.8 5.7 41 49-89 8-50 (259)
139 PRK07453 protochlorophyllide o 89.1 0.98 2.1E-05 39.6 5.7 41 49-89 7-49 (322)
140 PRK06139 short chain dehydroge 89.1 0.9 2E-05 41.0 5.6 42 48-89 7-50 (330)
141 TIGR03649 ergot_EASG ergot alk 89.0 0.43 9.4E-06 40.7 3.4 28 51-78 2-29 (285)
142 PLN03209 translocon at the inn 88.7 0.85 1.8E-05 45.8 5.7 46 32-77 59-109 (576)
143 PRK06181 short chain dehydroge 88.7 1.2 2.5E-05 37.2 5.7 31 49-79 2-32 (263)
144 PRK08628 short chain dehydroge 88.7 0.72 1.6E-05 38.3 4.4 31 48-78 7-37 (258)
145 PRK12746 short chain dehydroge 88.7 0.67 1.4E-05 38.3 4.2 29 49-77 7-35 (254)
146 PRK05693 short chain dehydroge 88.7 1.1 2.4E-05 37.9 5.6 30 49-78 2-31 (274)
147 PRK08642 fabG 3-ketoacyl-(acyl 88.6 0.81 1.8E-05 37.6 4.7 29 49-77 6-34 (253)
148 PLN00141 Tic62-NAD(P)-related 88.6 0.71 1.5E-05 39.0 4.4 30 48-77 17-46 (251)
149 PRK06484 short chain dehydroge 88.4 1.3 2.9E-05 41.2 6.4 43 47-89 268-312 (520)
150 PRK06138 short chain dehydroge 88.3 1.3 2.8E-05 36.4 5.6 30 49-78 6-35 (252)
151 PRK06171 sorbitol-6-phosphate 88.1 0.75 1.6E-05 38.5 4.2 30 49-78 10-39 (266)
152 PRK06128 oxidoreductase; Provi 88.0 0.7 1.5E-05 40.2 4.1 29 49-77 56-84 (300)
153 PRK07666 fabG 3-ketoacyl-(acyl 88.0 1.4 3.1E-05 36.2 5.7 31 49-79 8-38 (239)
154 COG1028 FabG Dehydrogenases wi 88.0 0.85 1.9E-05 37.6 4.4 31 47-77 4-34 (251)
155 PRK12743 oxidoreductase; Provi 87.9 0.94 2E-05 37.9 4.7 29 49-77 3-31 (256)
156 PRK06550 fabG 3-ketoacyl-(acyl 87.9 0.71 1.5E-05 37.7 3.8 32 49-80 6-37 (235)
157 PRK08594 enoyl-(acyl carrier p 87.8 1.3 2.7E-05 37.8 5.4 30 49-78 8-39 (257)
158 PLN02583 cinnamoyl-CoA reducta 87.7 1 2.2E-05 39.3 4.9 30 48-77 6-35 (297)
159 TIGR01830 3oxo_ACP_reduc 3-oxo 87.6 0.78 1.7E-05 37.1 3.9 29 51-79 1-29 (239)
160 PRK07201 short chain dehydroge 87.5 1.7 3.7E-05 41.6 6.7 41 49-89 372-414 (657)
161 TIGR02685 pter_reduc_Leis pter 87.5 1 2.2E-05 38.1 4.7 30 49-78 2-31 (267)
162 PRK12747 short chain dehydroge 87.4 1.1 2.3E-05 37.3 4.7 29 49-77 5-33 (252)
163 PLN00198 anthocyanidin reducta 87.3 0.97 2.1E-05 39.7 4.6 33 45-77 6-38 (338)
164 PRK06113 7-alpha-hydroxysteroi 87.3 1.6 3.5E-05 36.4 5.7 31 48-78 11-41 (255)
165 PRK06505 enoyl-(acyl carrier p 87.1 0.87 1.9E-05 39.3 4.1 30 49-78 8-39 (271)
166 PRK09242 tropinone reductase; 87.1 1.7 3.7E-05 36.2 5.7 31 48-78 9-39 (257)
167 PRK12935 acetoacetyl-CoA reduc 87.0 1.3 2.7E-05 36.5 4.9 29 49-77 7-35 (247)
168 PRK07832 short chain dehydroge 87.0 1.7 3.6E-05 36.9 5.7 29 50-78 2-30 (272)
169 PRK12744 short chain dehydroge 86.9 0.89 1.9E-05 38.0 4.0 29 49-77 9-37 (257)
170 PF00258 Flavodoxin_1: Flavodo 86.9 0.72 1.6E-05 35.7 3.2 40 54-93 7-46 (143)
171 PRK06198 short chain dehydroge 86.9 2.6 5.6E-05 35.0 6.7 31 49-79 7-38 (260)
172 PRK07533 enoyl-(acyl carrier p 86.6 2 4.3E-05 36.4 5.9 30 49-78 11-42 (258)
173 PRK08303 short chain dehydroge 86.5 0.97 2.1E-05 40.1 4.2 30 49-78 9-38 (305)
174 PLN02695 GDP-D-mannose-3',5'-e 86.5 1.9 4E-05 39.3 6.1 33 47-79 20-52 (370)
175 PRK07792 fabG 3-ketoacyl-(acyl 86.2 1.6 3.5E-05 38.3 5.4 31 48-78 12-42 (306)
176 PRK06172 short chain dehydroge 86.1 2 4.4E-05 35.6 5.7 30 49-78 8-37 (253)
177 PRK07041 short chain dehydroge 86.1 1.4 3E-05 35.9 4.6 29 52-80 1-29 (230)
178 PRK06701 short chain dehydroge 85.9 1.2 2.7E-05 38.7 4.5 31 49-79 47-77 (290)
179 PRK09009 C factor cell-cell si 85.9 1.2 2.6E-05 36.5 4.1 29 49-77 1-31 (235)
180 TIGR01289 LPOR light-dependent 85.6 2 4.4E-05 37.9 5.7 30 49-78 4-34 (314)
181 PRK12367 short chain dehydroge 85.5 1.2 2.7E-05 38.2 4.2 31 49-79 15-45 (245)
182 KOG1205 Predicted dehydrogenas 85.4 1.5 3.2E-05 40.5 4.9 41 49-89 13-55 (282)
183 PLN02730 enoyl-[acyl-carrier-p 85.2 1.2 2.6E-05 40.4 4.1 40 48-87 9-51 (303)
184 PRK08217 fabG 3-ketoacyl-(acyl 85.1 2.6 5.5E-05 34.4 5.7 31 49-79 6-36 (253)
185 PRK07370 enoyl-(acyl carrier p 85.1 1.3 2.7E-05 37.8 4.0 30 49-78 7-38 (258)
186 PRK07904 short chain dehydroge 85.1 2 4.3E-05 36.5 5.3 30 49-78 9-39 (253)
187 PRK09730 putative NAD(P)-bindi 85.1 1.4 3E-05 36.0 4.1 29 49-77 2-30 (247)
188 PRK07831 short chain dehydroge 85.1 2.3 5E-05 35.6 5.5 30 49-78 18-48 (262)
189 PRK06123 short chain dehydroge 85.0 1.7 3.8E-05 35.6 4.7 29 49-77 3-31 (248)
190 PRK08159 enoyl-(acyl carrier p 84.7 2 4.3E-05 37.1 5.1 30 49-78 11-42 (272)
191 COG0451 WcaG Nucleoside-diphos 84.6 1.3 2.7E-05 37.4 3.8 28 51-78 3-30 (314)
192 PRK09496 trkA potassium transp 84.4 13 0.00029 34.0 10.7 68 22-90 195-274 (453)
193 PRK06484 short chain dehydroge 84.3 2.2 4.8E-05 39.7 5.6 42 49-90 6-49 (520)
194 PRK08415 enoyl-(acyl carrier p 84.2 2.4 5.2E-05 36.8 5.5 30 49-78 6-37 (274)
195 PRK07424 bifunctional sterol d 84.0 1.4 3.1E-05 41.9 4.3 30 49-78 179-208 (406)
196 PRK06300 enoyl-(acyl carrier p 83.9 1.8 4E-05 38.9 4.8 31 48-78 8-40 (299)
197 PRK06603 enoyl-(acyl carrier p 83.9 1.5 3.3E-05 37.3 4.1 30 49-78 9-40 (260)
198 PRK08219 short chain dehydroge 83.9 2.7 5.9E-05 33.8 5.3 30 49-79 4-33 (227)
199 COG0702 Predicted nucleoside-d 83.8 5 0.00011 33.2 6.9 66 50-134 2-70 (275)
200 TIGR01829 AcAcCoA_reduct aceto 83.7 2.2 4.7E-05 34.7 4.7 30 49-78 1-30 (242)
201 PRK08690 enoyl-(acyl carrier p 83.6 1.6 3.5E-05 37.1 4.1 30 49-78 7-38 (261)
202 PRK10675 UDP-galactose-4-epime 83.6 1.6 3.5E-05 37.9 4.1 29 50-78 2-30 (338)
203 PLN02650 dihydroflavonol-4-red 83.3 1.7 3.6E-05 38.5 4.2 30 48-77 5-34 (351)
204 TIGR03466 HpnA hopanoid-associ 83.3 1.6 3.4E-05 37.2 3.9 29 50-78 2-30 (328)
205 TIGR01179 galE UDP-glucose-4-e 83.2 1.6 3.4E-05 36.9 3.8 29 50-78 1-29 (328)
206 PRK08278 short chain dehydroge 83.2 1.8 3.9E-05 37.0 4.2 31 49-79 7-37 (273)
207 PRK07984 enoyl-(acyl carrier p 83.2 1.7 3.7E-05 37.5 4.1 30 49-78 7-38 (262)
208 PLN02686 cinnamoyl-CoA reducta 83.1 1.7 3.6E-05 39.6 4.2 32 46-77 51-82 (367)
209 PRK05599 hypothetical protein; 83.1 2.8 6.1E-05 35.2 5.3 40 50-90 2-43 (246)
210 PLN02214 cinnamoyl-CoA reducta 82.8 1.8 3.9E-05 38.7 4.2 30 48-77 10-39 (342)
211 PRK12548 shikimate 5-dehydroge 82.6 0.84 1.8E-05 40.8 2.1 32 48-80 126-158 (289)
212 TIGR01500 sepiapter_red sepiap 82.5 3 6.5E-05 35.0 5.2 30 50-79 2-35 (256)
213 PLN02896 cinnamyl-alcohol dehy 82.5 2.4 5.1E-05 37.7 4.8 30 48-77 10-39 (353)
214 PRK06997 enoyl-(acyl carrier p 82.4 3.2 7E-05 35.4 5.5 30 49-78 7-38 (260)
215 TIGR01181 dTDP_gluc_dehyt dTDP 82.4 1.7 3.6E-05 36.7 3.7 29 50-78 1-31 (317)
216 PRK05579 bifunctional phosphop 82.2 1.8 3.9E-05 41.2 4.2 32 48-79 188-235 (399)
217 PRK06720 hypothetical protein; 82.0 3.9 8.5E-05 33.8 5.7 32 48-79 16-47 (169)
218 PF05368 NmrA: NmrA-like famil 81.6 3 6.4E-05 34.6 4.8 27 51-77 1-27 (233)
219 PRK12859 3-ketoacyl-(acyl-carr 81.5 2.2 4.7E-05 36.0 4.0 30 49-78 7-38 (256)
220 PLN02657 3,8-divinyl protochlo 81.4 2.6 5.7E-05 39.0 4.9 37 43-79 55-91 (390)
221 PLN02240 UDP-glucose 4-epimera 81.0 2.4 5.1E-05 37.0 4.2 30 49-78 6-35 (352)
222 PRK07791 short chain dehydroge 81.0 2.4 5.2E-05 36.8 4.3 30 49-78 7-36 (286)
223 PRK10217 dTDP-glucose 4,6-dehy 80.7 2.1 4.6E-05 37.6 3.8 29 49-77 2-30 (355)
224 KOG0725 Reductases with broad 80.3 4.1 8.9E-05 36.4 5.6 31 48-78 8-38 (270)
225 PRK05855 short chain dehydroge 79.9 5 0.00011 37.0 6.1 33 47-79 314-346 (582)
226 PLN02166 dTDP-glucose 4,6-dehy 79.7 2.9 6.3E-05 39.6 4.7 38 41-78 109-150 (436)
227 PLN02989 cinnamyl-alcohol dehy 79.5 2.8 6.1E-05 36.4 4.2 29 49-77 6-34 (325)
228 PF01370 Epimerase: NAD depend 79.4 2.8 6.1E-05 33.8 3.9 27 51-77 1-27 (236)
229 TIGR02622 CDP_4_6_dhtase CDP-g 79.4 2.8 6E-05 37.2 4.2 31 49-79 5-35 (349)
230 PRK07775 short chain dehydroge 79.4 5.3 0.00011 34.1 5.7 29 49-77 11-39 (274)
231 TIGR02632 RhaD_aldol-ADH rhamn 78.7 4.3 9.3E-05 40.6 5.7 31 48-78 414-444 (676)
232 KOG1200 Mitochondrial/plastidi 78.6 4.6 0.0001 37.0 5.3 45 48-92 14-60 (256)
233 TIGR01777 yfcH conserved hypot 78.5 1.9 4.2E-05 36.0 2.8 29 51-79 1-29 (292)
234 PF01695 IstB_IS21: IstB-like 78.1 3.9 8.4E-05 34.3 4.5 42 49-90 48-94 (178)
235 TIGR02114 coaB_strep phosphopa 77.9 2.6 5.7E-05 36.7 3.5 28 52-79 18-46 (227)
236 PRK12748 3-ketoacyl-(acyl-carr 77.4 3.3 7.2E-05 34.6 3.9 31 49-79 6-38 (256)
237 PRK13656 trans-2-enoyl-CoA red 77.3 3.7 8E-05 39.8 4.6 35 43-78 36-72 (398)
238 PLN02653 GDP-mannose 4,6-dehyd 77.1 3.2 6.9E-05 36.5 3.9 30 49-78 7-36 (340)
239 TIGR01214 rmlD dTDP-4-dehydror 77.1 3.3 7.2E-05 35.0 3.8 28 50-77 1-28 (287)
240 KOG1201 Hydroxysteroid 17-beta 76.9 3.9 8.5E-05 38.4 4.5 40 50-89 40-81 (300)
241 PF13561 adh_short_C2: Enoyl-( 76.5 5.2 0.00011 33.3 4.8 20 58-77 6-25 (241)
242 PLN02206 UDP-glucuronate decar 76.4 4.2 9.1E-05 38.6 4.7 37 42-78 109-149 (442)
243 PLN02572 UDP-sulfoquinovose sy 76.2 3.6 7.8E-05 38.9 4.2 30 49-78 48-77 (442)
244 PRK06732 phosphopantothenate-- 75.9 3.2 6.9E-05 36.2 3.5 28 52-79 19-47 (229)
245 TIGR01472 gmd GDP-mannose 4,6- 75.6 4 8.8E-05 36.0 4.1 29 49-77 1-29 (343)
246 smart00822 PKS_KR This enzymat 75.5 4.8 0.0001 30.1 3.9 28 50-77 2-30 (180)
247 TIGR00521 coaBC_dfp phosphopan 75.3 3.8 8.3E-05 39.0 4.1 31 48-78 185-231 (390)
248 PRK08261 fabG 3-ketoacyl-(acyl 75.2 8.1 0.00017 35.7 6.1 31 48-78 210-240 (450)
249 PLN02778 3,5-epimerase/4-reduc 74.7 6 0.00013 35.0 5.0 36 42-77 2-38 (298)
250 COG1484 DnaC DNA replication p 74.3 6.6 0.00014 34.9 5.1 51 42-93 100-155 (254)
251 PRK08309 short chain dehydroge 74.0 9.5 0.00021 32.0 5.8 38 50-88 2-41 (177)
252 TIGR03589 PseB UDP-N-acetylglu 73.5 4.8 0.0001 35.7 4.1 30 49-78 5-36 (324)
253 PRK07578 short chain dehydroge 73.3 5.1 0.00011 32.2 3.9 27 50-77 2-28 (199)
254 PRK14106 murD UDP-N-acetylmura 72.7 6.1 0.00013 36.5 4.6 34 48-82 5-38 (450)
255 PRK05568 flavodoxin; Provision 71.5 3.8 8.2E-05 31.9 2.6 24 54-77 12-35 (142)
256 PLN00015 protochlorophyllide r 71.4 7.1 0.00015 34.2 4.6 27 52-78 1-28 (308)
257 PRK08324 short chain dehydroge 70.9 9 0.0002 38.1 5.7 31 49-79 423-453 (681)
258 PRK06756 flavodoxin; Provision 70.6 3.8 8.2E-05 32.4 2.5 25 54-78 12-36 (148)
259 PLN00016 RNA-binding protein; 70.6 4.3 9.4E-05 36.7 3.2 34 46-79 50-87 (378)
260 PRK15181 Vi polysaccharide bio 70.3 6.5 0.00014 35.1 4.2 30 49-78 16-45 (348)
261 PF11017 DUF2855: Protein of u 70.2 5.3 0.00011 37.5 3.7 32 46-77 134-167 (314)
262 PF00857 Isochorismatase: Isoc 69.6 12 0.00026 29.7 5.1 32 46-77 110-142 (174)
263 PRK06940 short chain dehydroge 69.3 12 0.00026 32.2 5.5 27 50-78 4-30 (275)
264 PRK09271 flavodoxin; Provision 69.1 4.3 9.3E-05 33.0 2.6 25 53-77 10-34 (160)
265 PRK00258 aroE shikimate 5-dehy 68.8 5.7 0.00012 35.1 3.5 59 31-90 105-167 (278)
266 PF02254 TrkA_N: TrkA-N domain 68.7 17 0.00036 27.0 5.5 56 51-124 1-58 (116)
267 KOG4169 15-hydroxyprostaglandi 68.7 7.9 0.00017 35.9 4.4 45 49-93 6-55 (261)
268 cd00431 cysteine_hydrolases Cy 68.4 9.9 0.00021 29.9 4.4 31 47-77 109-140 (161)
269 KOG1610 Corticosteroid 11-beta 66.9 15 0.00032 35.0 6.0 47 45-91 26-74 (322)
270 cd05188 MDR Medium chain reduc 66.6 20 0.00042 29.1 5.9 42 45-88 133-176 (271)
271 COG3967 DltE Short-chain dehyd 66.4 13 0.00028 34.2 5.2 42 50-91 7-50 (245)
272 PF08643 DUF1776: Fungal famil 66.3 9.9 0.00021 35.4 4.6 40 51-90 6-48 (299)
273 PRK09620 hypothetical protein; 66.1 9.4 0.0002 33.6 4.2 20 58-77 29-48 (229)
274 PRK10084 dTDP-glucose 4,6 dehy 65.9 7.3 0.00016 34.2 3.5 28 50-77 2-29 (352)
275 PF04321 RmlD_sub_bind: RmlD s 65.8 6 0.00013 34.9 3.0 29 50-78 2-30 (286)
276 cd08253 zeta_crystallin Zeta-c 65.6 17 0.00038 30.1 5.5 45 42-87 140-186 (325)
277 PF01488 Shikimate_DH: Shikima 64.8 18 0.00038 28.7 5.2 43 47-90 11-56 (135)
278 cd01065 NAD_bind_Shikimate_DH 64.2 11 0.00023 29.4 3.8 42 47-89 18-62 (155)
279 TIGR00715 precor6x_red precorr 63.6 7.2 0.00015 35.1 3.1 32 50-82 2-33 (256)
280 TIGR01753 flav_short flavodoxi 63.3 6.6 0.00014 29.9 2.5 26 54-79 9-34 (140)
281 cd05288 PGDH Prostaglandin deh 63.1 25 0.00054 30.0 6.2 45 43-88 142-188 (329)
282 TIGR00507 aroE shikimate 5-deh 62.6 8.7 0.00019 33.7 3.4 42 47-89 116-159 (270)
283 PRK05569 flavodoxin; Provision 62.1 7.1 0.00015 30.4 2.5 25 54-78 12-36 (141)
284 PF03033 Glyco_transf_28: Glyc 62.1 7.8 0.00017 29.4 2.7 29 61-89 15-43 (139)
285 PRK07308 flavodoxin; Validated 61.7 6.6 0.00014 31.1 2.3 24 54-77 12-35 (146)
286 PF03853 YjeF_N: YjeF-related 61.4 11 0.00025 31.1 3.7 38 40-77 16-57 (169)
287 PF01073 3Beta_HSD: 3-beta hyd 61.2 14 0.0003 32.9 4.4 66 52-129 1-68 (280)
288 PRK09987 dTDP-4-dehydrorhamnos 61.2 10 0.00022 33.2 3.6 27 50-77 2-28 (299)
289 PRK09496 trkA potassium transp 60.8 18 0.0004 33.1 5.3 38 50-88 2-41 (453)
290 cd01080 NAD_bind_m-THF_DH_Cycl 59.4 23 0.0005 29.9 5.2 100 34-148 28-134 (168)
291 PLN02427 UDP-apiose/xylose syn 59.2 16 0.00035 32.9 4.6 37 42-78 8-45 (386)
292 KOG1502 Flavonol reductase/cin 58.5 14 0.0003 35.0 4.1 31 47-77 5-35 (327)
293 PLN02520 bifunctional 3-dehydr 57.6 23 0.0005 34.8 5.7 42 48-90 379-422 (529)
294 PRK11150 rfaD ADP-L-glycero-D- 57.3 13 0.00029 32.0 3.6 27 51-77 2-28 (308)
295 PRK08939 primosomal protein Dn 57.3 22 0.00049 32.5 5.2 43 48-90 156-203 (306)
296 cd01075 NAD_bind_Leu_Phe_Val_D 57.3 41 0.0009 28.6 6.5 30 47-77 27-56 (200)
297 TIGR01754 flav_RNR ribonucleot 56.8 8.1 0.00018 30.5 2.0 23 54-76 11-33 (140)
298 PRK06849 hypothetical protein; 56.7 15 0.00033 33.5 4.0 31 48-78 4-34 (389)
299 PF07287 DUF1446: Protein of u 55.5 30 0.00065 33.1 5.9 75 63-147 62-142 (362)
300 cd01015 CSHase N-carbamoylsarc 54.9 21 0.00045 29.3 4.2 31 47-77 113-144 (179)
301 PF02374 ArsA_ATPase: Anion-tr 54.8 15 0.00033 33.5 3.7 41 49-89 2-46 (305)
302 cd05284 arabinose_DH_like D-ar 54.7 28 0.00061 30.0 5.2 40 48-88 168-210 (340)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 54.6 21 0.00046 28.8 4.1 30 60-89 10-41 (157)
304 PRK06703 flavodoxin; Provision 54.1 10 0.00023 30.0 2.3 26 54-79 12-37 (151)
305 PF11886 DUF3406: Domain of un 54.1 8.1 0.00018 36.0 1.8 36 151-197 10-54 (273)
306 PLN03194 putative disease resi 54.1 18 0.00039 31.9 3.9 86 49-143 27-125 (187)
307 PRK10669 putative cation:proto 53.6 45 0.00098 32.4 6.9 43 44-87 412-457 (558)
308 PRK02472 murD UDP-N-acetylmura 53.5 18 0.00039 33.4 4.0 30 49-79 6-35 (447)
309 PRK03692 putative UDP-N-acetyl 53.2 6.1 0.00013 35.3 0.9 89 4-93 58-156 (243)
310 PRK09004 FMN-binding protein M 51.9 11 0.00024 30.6 2.1 27 54-80 12-38 (146)
311 COG0132 BioD Dethiobiotin synt 51.3 22 0.00047 31.8 4.0 30 48-77 2-36 (223)
312 COG4982 3-oxoacyl-[acyl-carrie 51.1 49 0.0011 35.0 6.9 97 41-139 389-505 (866)
313 PRK12377 putative replication 51.0 28 0.00062 31.1 4.7 45 46-90 99-148 (248)
314 PRK08105 flavodoxin; Provision 50.9 10 0.00022 30.9 1.8 30 54-83 12-41 (149)
315 PRK06835 DNA replication prote 49.5 33 0.00071 31.9 5.0 43 47-89 182-229 (329)
316 PRK08181 transposase; Validate 49.2 29 0.00063 31.4 4.5 43 47-89 105-152 (269)
317 PF02558 ApbA: Ketopantoate re 49.1 53 0.0011 25.5 5.5 36 53-89 3-39 (151)
318 TIGR03614 RutB pyrimidine util 48.6 31 0.00066 29.7 4.4 32 46-77 149-181 (226)
319 cd05276 p53_inducible_oxidored 48.6 65 0.0014 26.6 6.2 42 44-86 137-180 (323)
320 PRK11199 tyrA bifunctional cho 48.6 29 0.00062 32.4 4.5 44 41-84 91-134 (374)
321 PF12641 Flavodoxin_3: Flavodo 48.2 8.6 0.00019 32.3 1.0 18 53-70 7-24 (160)
322 KOG1371 UDP-glucose 4-epimeras 48.0 24 0.00051 34.0 3.9 42 48-89 2-46 (343)
323 PRK14192 bifunctional 5,10-met 47.4 51 0.0011 30.1 5.8 37 43-79 154-190 (283)
324 cd08259 Zn_ADH5 Alcohol dehydr 47.3 53 0.0012 27.8 5.6 38 49-86 164-203 (332)
325 TIGR02197 heptose_epim ADP-L-g 47.3 21 0.00045 30.4 3.2 27 51-77 1-28 (314)
326 PRK12320 hypothetical protein; 46.2 26 0.00056 36.2 4.2 30 50-79 2-31 (699)
327 PRK11440 putative hydrolase; P 46.2 37 0.0008 28.0 4.4 32 46-77 119-151 (188)
328 PF13477 Glyco_trans_4_2: Glyc 46.1 28 0.00061 26.1 3.4 27 51-77 2-29 (139)
329 COG4635 HemG Flavodoxin [Energ 46.0 17 0.00037 32.0 2.4 24 54-77 11-34 (175)
330 cd08289 MDR_yhfp_like Yhfp put 45.8 71 0.0015 27.2 6.2 42 47-88 146-189 (326)
331 PRK07952 DNA replication prote 45.7 47 0.001 29.6 5.2 49 42-90 93-146 (244)
332 cd01012 YcaC_related YcaC rela 45.4 40 0.00087 27.1 4.4 32 46-77 86-118 (157)
333 PRK08116 hypothetical protein; 45.4 43 0.00094 29.8 5.0 42 50-91 116-162 (268)
334 PF04127 DFP: DNA / pantothena 45.1 29 0.00062 29.8 3.7 20 58-77 29-48 (185)
335 smart00829 PKS_ER Enoylreducta 45.0 83 0.0018 25.5 6.2 44 43-87 101-146 (288)
336 PRK08125 bifunctional UDP-gluc 44.9 37 0.00081 33.7 4.9 46 34-79 297-347 (660)
337 cd05286 QOR2 Quinone oxidoredu 44.8 63 0.0014 26.6 5.5 44 43-87 133-178 (320)
338 KOG1209 1-Acyl dihydroxyaceton 44.7 27 0.00058 32.6 3.6 33 47-79 6-39 (289)
339 PF08659 KR: KR domain; Inter 44.6 33 0.00071 28.1 3.8 27 51-77 3-30 (181)
340 cd05280 MDR_yhdh_yhfp Yhdh and 44.4 79 0.0017 26.8 6.2 41 47-87 146-188 (325)
341 PRK12749 quinate/shikimate deh 44.3 19 0.0004 32.7 2.5 30 49-79 125-155 (288)
342 PF03808 Glyco_tran_WecB: Glyc 44.2 55 0.0012 27.1 5.1 65 28-93 29-100 (172)
343 TIGR03638 cas1_ECOLI CRISPR-as 44.0 39 0.00084 30.4 4.5 63 12-79 9-75 (269)
344 cd08245 CAD Cinnamyl alcohol d 43.8 61 0.0013 27.9 5.5 39 49-88 164-204 (330)
345 cd08270 MDR4 Medium chain dehy 43.6 67 0.0015 27.0 5.6 41 48-88 133-175 (305)
346 cd01014 nicotinamidase_related 43.6 38 0.00083 27.1 4.0 32 46-77 97-129 (155)
347 PF06564 YhjQ: YhjQ protein; 43.5 24 0.00053 31.9 3.1 72 58-138 16-89 (243)
348 PRK06921 hypothetical protein; 43.4 47 0.001 29.7 4.9 42 48-89 117-164 (266)
349 TIGR01915 npdG NADPH-dependent 43.4 67 0.0014 27.2 5.6 38 51-88 3-42 (219)
350 cd03591 CLECT_collectin_like C 43.3 98 0.0021 23.1 6.0 81 57-150 8-94 (114)
351 cd08294 leukotriene_B4_DH_like 43.2 67 0.0015 27.4 5.6 41 49-89 145-187 (329)
352 PRK06718 precorrin-2 dehydroge 43.2 37 0.00081 29.1 4.1 41 47-88 9-49 (202)
353 COG0426 FpaA Uncharacterized f 43.1 24 0.00051 34.3 3.2 40 54-93 257-298 (388)
354 PRK06526 transposase; Provisio 43.1 31 0.00066 30.7 3.7 39 49-87 99-142 (254)
355 cd07099 ALDH_DDALDH Methylomon 42.7 29 0.00063 32.5 3.6 51 23-77 175-225 (453)
356 cd08268 MDR2 Medium chain dehy 42.6 76 0.0016 26.4 5.7 38 49-86 146-185 (328)
357 PF13579 Glyco_trans_4_4: Glyc 42.1 24 0.00053 25.8 2.5 24 55-78 1-24 (160)
358 TIGR02823 oxido_YhdH putative 41.5 83 0.0018 26.9 6.0 44 44-87 142-187 (323)
359 PRK08727 hypothetical protein; 41.4 41 0.0009 29.0 4.1 34 49-82 42-79 (233)
360 PRK09529 bifunctional acetyl-C 41.4 51 0.0011 34.6 5.3 54 24-89 125-178 (711)
361 COG1832 Predicted CoA-binding 41.3 19 0.00041 30.6 2.0 39 42-80 10-51 (140)
362 PLN02725 GDP-4-keto-6-deoxyman 41.3 18 0.0004 30.6 1.9 26 52-77 1-26 (306)
363 PLN02621 nicotinamidase 40.7 49 0.0011 27.8 4.4 32 46-77 125-157 (197)
364 TIGR00696 wecB_tagA_cpsF bacte 39.6 21 0.00044 30.5 1.9 62 30-92 31-98 (177)
365 cd01013 isochorismatase Isocho 39.5 49 0.0011 28.0 4.2 32 46-77 140-172 (203)
366 COG0003 ArsA Predicted ATPase 39.4 37 0.00081 31.8 3.8 40 48-87 2-45 (322)
367 PRK05865 hypothetical protein; 39.3 39 0.00084 35.8 4.2 29 50-78 2-30 (854)
368 PRK11609 nicotinamidase/pyrazi 39.1 54 0.0012 27.6 4.4 32 46-77 140-172 (212)
369 cd08288 MDR_yhdh Yhdh putative 39.0 1.1E+02 0.0023 26.1 6.2 41 47-87 146-188 (324)
370 TIGR02825 B4_12hDH leukotriene 39.0 82 0.0018 27.3 5.6 44 44-88 136-181 (325)
371 COG4693 PchG Oxidoreductase (N 38.9 14 0.0003 35.5 0.9 88 42-132 58-151 (361)
372 cd08293 PTGR2 Prostaglandin re 38.7 1.2E+02 0.0027 26.3 6.6 48 44-91 150-201 (345)
373 cd06184 flavohem_like_fad_nad_ 38.6 34 0.00073 28.9 3.1 37 37-74 198-234 (247)
374 PF02737 3HCDH_N: 3-hydroxyacy 38.6 91 0.002 26.1 5.6 26 51-77 2-27 (180)
375 PF00356 LacI: Bacterial regul 38.5 21 0.00045 24.5 1.5 16 201-216 30-45 (46)
376 PLN02260 probable rhamnose bio 38.4 45 0.00098 32.8 4.4 32 48-79 6-39 (668)
377 PRK10754 quinone oxidoreductas 38.3 1.1E+02 0.0023 26.3 6.2 44 43-87 137-182 (327)
378 cd01917 ACS_2 Acetyl-CoA synth 38.1 52 0.0011 31.0 4.5 43 24-77 117-159 (287)
379 COG0429 Predicted hydrolase of 38.0 73 0.0016 30.7 5.5 50 26-77 53-109 (345)
380 PF01583 APS_kinase: Adenylyls 37.9 57 0.0012 27.6 4.3 32 51-82 5-40 (156)
381 cd08250 Mgc45594_like Mgc45594 37.9 87 0.0019 26.8 5.5 44 44-88 137-182 (329)
382 PRK11908 NAD-dependent epimera 37.9 47 0.001 29.4 4.0 30 49-78 2-32 (347)
383 PLN02260 probable rhamnose bio 37.7 39 0.00084 33.3 3.8 29 49-77 381-409 (668)
384 cd07145 ALDH_LactADH_F420-Bios 37.5 40 0.00086 31.7 3.7 52 23-77 179-231 (456)
385 cd01011 nicotinamidase Nicotin 37.4 61 0.0013 27.2 4.4 32 46-77 136-168 (196)
386 PF06057 VirJ: Bacterial virul 37.3 53 0.0012 29.0 4.2 52 47-100 2-55 (192)
387 cd08295 double_bond_reductase_ 37.3 89 0.0019 27.3 5.6 40 49-88 153-194 (338)
388 PRK07201 short chain dehydroge 37.3 57 0.0012 31.4 4.8 29 50-78 2-32 (657)
389 cd08242 MDR_like Medium chain 37.2 1E+02 0.0022 26.4 5.9 43 44-88 153-197 (319)
390 cd08241 QOR1 Quinone oxidoredu 37.0 96 0.0021 25.7 5.5 44 43-87 136-181 (323)
391 COG1090 Predicted nucleoside-d 36.9 31 0.00068 32.6 2.8 28 51-78 1-28 (297)
392 COG0169 AroE Shikimate 5-dehyd 36.5 35 0.00076 31.4 3.1 61 31-92 107-172 (283)
393 PRK13982 bifunctional SbtC-lik 36.4 35 0.00077 33.7 3.3 21 58-78 282-302 (475)
394 PRK00141 murD UDP-N-acetylmura 36.3 70 0.0015 30.6 5.1 38 41-79 7-45 (473)
395 KOG2380 Prephenate dehydrogena 36.2 22 0.00047 35.1 1.8 137 11-160 11-175 (480)
396 COG0623 FabI Enoyl-[acyl-carri 36.0 80 0.0017 29.4 5.2 51 49-100 7-60 (259)
397 PF00670 AdoHcyase_NAD: S-aden 35.9 49 0.0011 28.4 3.6 87 49-139 24-115 (162)
398 PRK04308 murD UDP-N-acetylmura 35.8 54 0.0012 30.6 4.2 29 49-78 6-34 (445)
399 PTZ00381 aldehyde dehydrogenas 35.6 38 0.00083 32.9 3.3 52 22-77 163-214 (493)
400 cd05282 ETR_like 2-enoyl thioe 35.3 96 0.0021 26.3 5.3 40 49-88 140-181 (323)
401 PRK06719 precorrin-2 dehydroge 35.2 66 0.0014 26.5 4.3 40 47-87 12-51 (157)
402 TIGR02824 quinone_pig3 putativ 35.2 1.4E+02 0.003 24.8 6.2 34 43-77 136-169 (325)
403 PF13439 Glyco_transf_4: Glyco 35.1 36 0.00078 25.3 2.5 24 54-77 11-34 (177)
404 PF01113 DapB_N: Dihydrodipico 34.8 64 0.0014 25.3 3.9 28 50-77 2-30 (124)
405 cd06209 BenDO_FAD_NAD Benzoate 34.7 43 0.00093 27.9 3.1 52 21-74 157-218 (228)
406 KOG1203 Predicted dehydrogenas 34.5 58 0.0013 31.9 4.3 52 26-77 56-108 (411)
407 PLN02174 aldehyde dehydrogenas 34.4 50 0.0011 32.3 3.9 52 22-77 166-217 (484)
408 PRK03767 NAD(P)H:quinone oxido 34.3 34 0.00073 28.8 2.4 24 54-77 12-36 (200)
409 TIGR03640 cas1_DVULG CRISPR-as 34.2 83 0.0018 29.1 5.1 37 41-78 31-68 (340)
410 PF08032 SpoU_sub_bind: RNA 2' 34.1 15 0.00033 25.6 0.3 41 48-88 18-59 (76)
411 cd08297 CAD3 Cinnamyl alcohol 34.0 1.1E+02 0.0024 26.5 5.6 38 49-86 167-206 (341)
412 COG1335 PncA Amidases related 33.8 77 0.0017 26.1 4.4 32 46-77 131-163 (205)
413 PTZ00354 alcohol dehydrogenase 33.7 1.1E+02 0.0025 25.9 5.5 40 49-88 142-183 (334)
414 PRK03562 glutathione-regulated 33.7 81 0.0018 31.6 5.3 46 42-88 394-441 (621)
415 COG0569 TrkA K+ transport syst 33.6 1.5E+02 0.0032 25.8 6.3 61 50-124 2-62 (225)
416 cd01983 Fer4_NifH The Fer4_Nif 33.0 85 0.0018 21.2 3.9 22 58-79 13-34 (99)
417 PRK06129 3-hydroxyacyl-CoA deh 32.9 1.1E+02 0.0023 27.4 5.5 35 50-85 4-40 (308)
418 PRK07417 arogenate dehydrogena 32.5 1.1E+02 0.0023 27.0 5.4 37 51-88 3-41 (279)
419 TIGR03641 cas1_HMARI CRISPR-as 32.5 88 0.0019 28.8 5.0 37 42-79 27-64 (322)
420 TIGR00745 apbA_panE 2-dehydrop 32.2 57 0.0012 27.9 3.5 30 60-89 2-32 (293)
421 cd08260 Zn_ADH6 Alcohol dehydr 32.2 1.2E+02 0.0026 26.4 5.6 39 49-88 167-207 (345)
422 PHA03112 IL-18 binding protein 32.1 29 0.00064 29.5 1.7 46 109-157 58-109 (141)
423 PRK04017 hypothetical protein; 31.9 36 0.00077 28.5 2.1 55 29-85 48-106 (132)
424 PRK12404 stage V sporulation p 31.8 35 0.00076 32.6 2.3 26 50-75 227-253 (334)
425 cd02034 CooC The accessory pro 31.5 64 0.0014 25.3 3.4 38 51-89 2-43 (116)
426 cd01336 MDH_cytoplasmic_cytoso 30.9 71 0.0015 29.4 4.1 29 50-78 4-39 (325)
427 COG4741 Predicted secreted end 30.7 24 0.00051 31.0 0.9 24 127-153 92-116 (175)
428 cd00550 ArsA_ATPase Oxyanion-t 30.4 51 0.0011 28.8 3.0 38 51-88 3-44 (254)
429 cd08261 Zn_ADH7 Alcohol dehydr 30.3 1.7E+02 0.0037 25.4 6.2 44 43-88 156-201 (337)
430 PF07451 SpoVAD: Stage V sporu 30.2 42 0.00091 32.2 2.5 26 50-75 224-250 (329)
431 cd08244 MDR_enoyl_red Possible 30.2 1.5E+02 0.0032 25.1 5.7 40 49-88 144-185 (324)
432 PLN03154 putative allyl alcoho 30.1 1.5E+02 0.0033 26.6 6.0 42 49-90 160-203 (348)
433 PRK05642 DNA replication initi 30.0 81 0.0018 27.3 4.1 36 49-84 46-85 (234)
434 PRK09183 transposase/IS protei 30.0 85 0.0018 27.8 4.3 44 44-88 99-147 (259)
435 TIGR03443 alpha_am_amid L-amin 29.9 77 0.0017 33.6 4.6 30 48-77 971-1004(1389)
436 PRK08304 stage V sporulation p 29.9 41 0.00088 32.2 2.4 26 50-75 229-255 (337)
437 PF00455 DeoRC: DeoR C termina 29.9 66 0.0014 26.4 3.4 45 40-87 13-58 (161)
438 PRK09260 3-hydroxybutyryl-CoA 29.7 1.3E+02 0.0027 26.5 5.3 38 50-88 3-42 (288)
439 cd08235 iditol_2_DH_like L-idi 29.7 1.3E+02 0.0028 26.0 5.3 42 44-87 163-207 (343)
440 cd07132 ALDH_F3AB Aldehyde deh 29.5 53 0.0012 31.2 3.2 51 23-77 155-205 (443)
441 TIGR03574 selen_PSTK L-seryl-t 29.4 96 0.0021 26.6 4.4 33 51-83 2-38 (249)
442 PF13399 LytR_C: LytR cell env 29.4 86 0.0019 22.8 3.6 32 46-77 2-34 (90)
443 PF01494 FAD_binding_3: FAD bi 29.4 52 0.0011 27.8 2.8 28 50-78 3-30 (356)
444 PRK14498 putative molybdopteri 29.2 1.2E+02 0.0027 30.1 5.7 79 2-90 156-246 (633)
445 cd08243 quinone_oxidoreductase 29.1 1.6E+02 0.0034 24.7 5.6 39 49-87 144-184 (320)
446 PRK09310 aroDE bifunctional 3- 29.1 59 0.0013 31.6 3.4 31 47-78 331-361 (477)
447 cd05289 MDR_like_2 alcohol deh 29.0 1.8E+02 0.0039 24.0 5.8 33 44-77 142-174 (309)
448 TIGR02845 spore_V_AD stage V s 28.9 43 0.00093 31.9 2.4 26 50-75 223-249 (327)
449 PRK11259 solA N-methyltryptoph 28.8 47 0.001 29.3 2.5 30 50-80 5-34 (376)
450 cd06533 Glyco_transf_WecG_TagA 28.7 41 0.00089 27.9 2.0 50 27-77 26-77 (171)
451 TIGR01279 DPOR_bchN light-inde 28.5 1.4E+02 0.0031 28.1 5.8 46 47-93 273-323 (407)
452 COG0373 HemA Glutamyl-tRNA red 28.4 1.5E+02 0.0032 29.1 6.0 98 47-148 177-290 (414)
453 PRK13604 luxD acyl transferase 28.4 1.9E+02 0.0041 27.1 6.5 51 27-77 14-69 (307)
454 PRK03659 glutathione-regulated 28.4 1.1E+02 0.0024 30.5 5.2 42 46-88 398-441 (601)
455 PF01266 DAO: FAD dependent ox 28.3 59 0.0013 27.5 2.9 20 60-79 10-29 (358)
456 PLN02203 aldehyde dehydrogenas 28.2 61 0.0013 31.5 3.4 52 22-77 162-213 (484)
457 cd08292 ETR_like_2 2-enoyl thi 28.2 1.5E+02 0.0034 25.1 5.5 40 49-88 141-182 (324)
458 cd08266 Zn_ADH_like1 Alcohol d 28.1 1.7E+02 0.0037 24.6 5.7 38 49-86 168-207 (342)
459 PF04430 DUF498: Protein of un 27.9 96 0.0021 24.0 3.8 40 50-89 55-101 (110)
460 TIGR02817 adh_fam_1 zinc-bindi 27.7 1.6E+02 0.0034 25.3 5.5 41 48-88 149-192 (336)
461 PF01656 CbiA: CobQ/CobB/MinD/ 27.7 65 0.0014 25.4 2.9 21 58-78 13-33 (195)
462 smart00034 CLECT C-type lectin 27.7 1.6E+02 0.0035 20.8 4.8 35 59-93 19-55 (126)
463 PF03721 UDPG_MGDP_dh_N: UDP-g 27.7 95 0.002 26.2 4.0 32 58-89 9-42 (185)
464 cd03592 CLECT_selectins_like C 27.6 2.4E+02 0.0052 20.8 5.8 35 58-92 8-44 (115)
465 PRK14175 bifunctional 5,10-met 27.5 1.6E+02 0.0035 27.3 5.8 91 44-149 154-246 (286)
466 PF03446 NAD_binding_2: NAD bi 27.4 1.2E+02 0.0027 24.4 4.5 102 51-157 4-124 (163)
467 PRK06141 ornithine cyclodeamin 27.2 1.3E+02 0.0028 27.3 5.1 63 26-89 95-169 (314)
468 PF05240 APOBEC_C: APOBEC-like 27.1 56 0.0012 23.7 2.2 20 66-85 9-28 (55)
469 COG3019 Predicted metal-bindin 27.1 61 0.0013 28.0 2.8 32 62-93 40-73 (149)
470 COG2217 ZntA Cation transport 27.0 1.6E+02 0.0035 30.7 6.3 13 107-119 600-612 (713)
471 cd05195 enoyl_red enoyl reduct 26.9 2E+02 0.0043 23.2 5.6 40 49-88 110-151 (293)
472 TIGR02883 spore_cwlD N-acetylm 26.9 55 0.0012 27.4 2.5 26 58-83 29-54 (189)
473 PF03807 F420_oxidored: NADP o 26.8 1.6E+02 0.0035 21.0 4.7 35 58-92 8-48 (96)
474 cd03603 CLECT_VCBS A bacterial 26.2 1.7E+02 0.0036 22.3 4.9 34 58-91 8-43 (118)
475 cd03593 CLECT_NK_receptors_lik 26.2 1.7E+02 0.0037 21.3 4.8 32 59-90 19-52 (116)
476 cd03522 MoeA_like MoeA_like. T 26.1 1.1E+02 0.0024 28.6 4.5 69 5-90 139-212 (312)
477 PRK11104 hemG protoporphyrinog 26.0 51 0.0011 27.6 2.1 23 54-77 11-33 (177)
478 PF00056 Ldh_1_N: lactate/mala 26.0 90 0.0019 25.1 3.5 28 50-77 2-31 (141)
479 PRK00421 murC UDP-N-acetylmura 25.8 1E+02 0.0022 29.1 4.2 30 50-80 9-39 (461)
480 CHL00073 chlN photochlorophyll 25.8 1.4E+02 0.0031 29.4 5.4 29 48-77 314-342 (457)
481 PRK06522 2-dehydropantoate 2-r 25.6 1.1E+02 0.0023 26.4 4.1 38 51-89 3-42 (304)
482 COG1023 Gnd Predicted 6-phosph 25.5 96 0.0021 29.4 4.0 53 57-112 8-66 (300)
483 PRK13771 putative alcohol dehy 25.5 1.9E+02 0.004 25.0 5.5 40 49-88 164-205 (334)
484 PRK11921 metallo-beta-lactamas 25.4 52 0.0011 30.6 2.2 24 54-77 258-283 (394)
485 PRK11241 gabD succinate-semial 25.4 1.1E+02 0.0024 29.6 4.5 53 22-77 201-254 (482)
486 PF13380 CoA_binding_2: CoA bi 25.3 1.2E+02 0.0026 23.7 4.0 31 50-80 2-35 (116)
487 PRK01077 cobyrinic acid a,c-di 25.1 73 0.0016 30.5 3.2 29 49-77 4-37 (451)
488 KOG1207 Diacetyl reductase/L-x 25.1 1.3E+02 0.0029 27.5 4.7 41 49-89 8-50 (245)
489 PLN00093 geranylgeranyl diphos 25.1 1.1E+02 0.0025 29.2 4.5 40 39-79 30-69 (450)
490 PF02882 THF_DHG_CYH_C: Tetrah 25.0 1.4E+02 0.0031 25.2 4.6 34 44-77 32-65 (160)
491 PF13450 NAD_binding_8: NAD(P) 25.0 48 0.0011 23.5 1.6 18 61-78 8-25 (68)
492 TIGR00197 yjeF_nterm yjeF N-te 24.9 62 0.0013 27.8 2.5 39 39-77 37-77 (205)
493 cd07102 ALDH_EDX86601 Uncharac 24.9 1.1E+02 0.0023 28.8 4.2 53 22-77 171-223 (452)
494 cd07108 ALDH_MGR_2402 Magnetos 24.8 99 0.0021 29.2 4.0 54 22-77 171-224 (457)
495 COG4938 Uncharacterized conser 24.8 69 0.0015 31.0 2.9 19 58-77 279-297 (374)
496 TIGR01755 flav_wrbA NAD(P)H:qu 24.8 63 0.0014 27.3 2.5 24 54-77 11-35 (197)
497 cd08230 glucose_DH Glucose deh 24.7 4E+02 0.0087 23.6 7.6 39 49-88 174-217 (355)
498 TIGR01377 soxA_mon sarcosine o 24.7 61 0.0013 28.7 2.4 29 51-80 3-31 (380)
499 PRK12549 shikimate 5-dehydroge 24.6 1.9E+02 0.004 26.1 5.6 40 49-89 128-170 (284)
500 cd06215 FNR_iron_sulfur_bindin 24.6 79 0.0017 26.2 3.0 52 21-73 158-221 (231)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=9.1e-110 Score=803.07 Aligned_cols=216 Identities=67% Similarity=1.170 Sum_probs=211.0
Q ss_pred cccccccccccceeeEeecCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecchhHH
Q 041887 4 INYQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEH 83 (223)
Q Consensus 4 ~LNq~e~LN~~Gelyv~k~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y 83 (223)
+|||||+|||||||||+|||+||||||||||||||||||+||+||+||||||++||||||||+|||+|||||+++++|||
T Consensus 404 ~LNk~~~LN~~G~l~v~k~p~L~vrvv~G~tLtaAvvln~ip~~~~~vfl~G~~sK~~raia~~lc~r~i~~~t~~~~~~ 483 (620)
T PLN02869 404 LLNQGEELNRYGELYIHRNPKLKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNLSKVAYFIASALCQRGIQVATFREDEY 483 (620)
T ss_pred hcchhhhhcCCceEeeecCCCcceEEEeCCchHHHHHHHhcCCCCceEEEecCccHHHHHHHHHHHhcCCeEeecCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999777999999
Q ss_pred HHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhccCCCceeeeccccCCCccCCCCcccccCCcccCCcccccc
Q 041887 84 EKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAERGTMFVPFSQFPPAKKRRKDCTYHLTPAMATPAALENV 163 (223)
Q Consensus 84 ~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ApkGt~FipfsQfPp~~~~RkDC~Y~~tPAM~~P~~~~n~ 163 (223)
++||+++|++++|+||+++|+|+||+||||||+|++||+|||+||+||||||||| +++||||||++||||++||++||+
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~~~~~k~w~vg~~~~~~eq~~A~~gt~f~~~~~~p~-~~~R~dC~Y~~~pam~~p~~~~~~ 562 (620)
T PLN02869 484 EKLNKKLPNTECGSKLLLSKNYSEKIWLVGDGLTEEEQKKASKGTLFIPFSQFPP-KRLRKDCFYHTTPAMMSPKSFENV 562 (620)
T ss_pred HHHHHhccchhhhhhEEEeeccCceeEEecCCCCHHHHhhCCCCCeecccccCCc-hhhhccccccCCccccCChhhccc
Confidence 9999999994499999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred hhhhcccccccchheeeccceeeccCCCcccccCccCChHHHHHHHHHcCCccccCC
Q 041887 164 DSCENWLPRRVMSAWRIGGIVHALEGWNEHECGYTISNVDTVWDAALRHGFVPLTIP 220 (223)
Q Consensus 164 ~sCEnwlpRrvmsA~r~aGivHaLEgW~~hEcG~~id~id~vW~AAl~HGF~P~~~~ 220 (223)
|||||||||||||||||||||||||||++||||.++|+||+||+|||+|||+|+++|
T Consensus 563 ~sce~~l~r~v~~a~~~~givh~legw~~he~g~~v~~id~~W~aal~hgf~p~~~~ 619 (620)
T PLN02869 563 DSCENWLPRRAMSAWRVAGILHALEGWNVHECGYTMFDIEKIWEASLQHGFRPLLIP 619 (620)
T ss_pred chhhccccchhhhHhhhcceeeeecCccccccccccccHHHHHHHHHHcCCccCCCC
Confidence 999999999999999999999999999999999778899999999999999999876
No 2
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=100.00 E-value=6.4e-98 Score=626.33 Aligned_cols=164 Identities=61% Similarity=1.062 Sum_probs=162.2
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhccCCCcee
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAERGTMF 130 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ApkGt~F 130 (223)
|||+|++||||||||+|||+|||||+|+++|+|++||+++|++ +++||++|++|+.|+||||||||++||+|||+||+|
T Consensus 1 V~L~G~~sKvaraiA~~LC~rgv~V~m~~~~~y~~lk~~~~~~-~~~~Lv~~~~~~~K~WlVGd~l~~~EQ~~Ap~Gt~F 79 (164)
T PF12076_consen 1 VFLTGNTSKVARAIALALCRRGVQVVMLSKERYESLKSEAPEE-CQSNLVQSTSYQAKTWLVGDGLTEEEQKWAPKGTHF 79 (164)
T ss_pred CeecccccHHHHHHHHHHHhcCCEEEEecHHHHHHHHHHcCHH-hhccEEeecCCCceeEEeCCCCCHHHHhcCCCCCEE
Confidence 7999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeccccCCCccCCCCcccccCCcccCCcccccchhhhcccccccchheeeccceeeccCCCcccccCccCChHHHHHHHH
Q 041887 131 VPFSQFPPAKKRRKDCTYHLTPAMATPAALENVDSCENWLPRRVMSAWRIGGIVHALEGWNEHECGYTISNVDTVWDAAL 210 (223)
Q Consensus 131 ipfsQfPp~~~~RkDC~Y~~tPAM~~P~~~~n~~sCEnwlpRrvmsA~r~aGivHaLEgW~~hEcG~~id~id~vW~AAl 210 (223)
|||||||| +++||||||++||||++|++++|+|||||||||||||||||||||||||||++||||++|++||+||+|||
T Consensus 80 ipfsqfP~-~~~RkDC~Y~~tPAM~~P~~~~nl~sCEnwlpRrVmsAwr~aGivHaLEgW~~HEcG~~v~~idkvW~AAl 158 (164)
T PF12076_consen 80 IPFSQFPP-KKVRKDCTYHSTPAMKVPKSMENLHSCENWLPRRVMSAWRAAGIVHALEGWNHHECGDDVDRIDKVWEAAL 158 (164)
T ss_pred eeccCCCc-HHHhCCCcccCcccccCChhhhhhhhhhccchhhHHHHHhhhhhhhhhcCCcccccCcccccHHHHHHHHH
Confidence 99999999 78999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HcCCcc
Q 041887 211 RHGFVP 216 (223)
Q Consensus 211 ~HGF~P 216 (223)
+|||+|
T Consensus 159 ~HGF~P 164 (164)
T PF12076_consen 159 KHGFRP 164 (164)
T ss_pred HcCCCC
Confidence 999998
No 3
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.79 E-value=2e-08 Score=92.89 Aligned_cols=192 Identities=16% Similarity=0.303 Sum_probs=127.3
Q ss_pred ecCCceE---EEecCCceeeeeeeccCCC---------CCceEEEecccchHHHHHHHHHHhc-Cc-EEEecc--hhHHH
Q 041887 21 KNPELKI---KVVDGSSLAVAVLTNSIPD---------GTTQVVIRGILTKVAYATAFALCQK-GI-QVVTLR--EDEHE 84 (223)
Q Consensus 21 k~P~Lkv---rvVdGssLaaAvVlnsIP~---------gt~qV~L~G~~sKva~aiA~aLC~r-gv-qV~~~~--~~~y~ 84 (223)
+-.++.+ ++-.|||+||++....+.. ..+.|+++|++-.+|+.+|..|+++ |+ ++++.+ .++.+
T Consensus 116 ~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~ 195 (340)
T PRK14982 116 QVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ 195 (340)
T ss_pred ccccceeccccccCCchhHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH
Confidence 3355666 6889999999987754432 3468999999999999999999865 65 666633 34555
Q ss_pred HHHhhcCCcccccceeeeccc-ee--eEEEecC----CCCHHHhhccCCCceeeeccccCCC--ccCC-CCcccccCCcc
Q 041887 85 KLIRSFGGKSESKNLLVSRSY-CQ--KIWLVGN----GLTEEEQSKAERGTMFVPFSQFPPA--KKRR-KDCTYHLTPAM 154 (223)
Q Consensus 85 ~lk~~~~~~~~~~~L~~~~~~-~~--K~WlVGd----~l~~~eQ~~ApkGt~FipfsQfPp~--~~~R-kDC~Y~~tPAM 154 (223)
.|..++... .-..+- ..+ .+ =+|+.|. -++++ . ..++..++-.+ +|.. +.+. .|+.+..-==.
T Consensus 196 ~La~el~~~-~i~~l~--~~l~~aDiVv~~ts~~~~~~I~~~-~--l~~~~~viDiA-vPRDVd~~v~~~~V~v~~gG~V 268 (340)
T PRK14982 196 ELQAELGGG-KILSLE--EALPEADIVVWVASMPKGVEIDPE-T--LKKPCLMIDGG-YPKNLDTKVQGPGIHVLKGGIV 268 (340)
T ss_pred HHHHHhccc-cHHhHH--HHHccCCEEEECCcCCcCCcCCHH-H--hCCCeEEEEec-CCCCCCcccCCCCEEEEeCCcc
Confidence 555554321 000000 000 11 1133332 14443 3 36889999998 8876 4443 56665443344
Q ss_pred cCCcccc-cchh-hhcccccccchheeeccceeeccCCCcc-cccCc-cC--ChHHHHHHHHHcCCccccC
Q 041887 155 ATPAALE-NVDS-CENWLPRRVMSAWRIGGIVHALEGWNEH-ECGYT-IS--NVDTVWDAALRHGFVPLTI 219 (223)
Q Consensus 155 ~~P~~~~-n~~s-CEnwlpRrvmsA~r~aGivHaLEgW~~h-EcG~~-id--~id~vW~AAl~HGF~P~~~ 219 (223)
.+|-++. ++.+ .+.-+|.|.+.||.|--||=+||||.+| -.|.. |. +|+.+=+.|.+|||+|+..
T Consensus 269 ~~p~~vd~~l~~~v~~~~~~r~~~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~kHGf~~~~~ 339 (340)
T PRK14982 269 EHSLDIDWKIMEIAEMDNPQRQMFACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVKHGFSPLLL 339 (340)
T ss_pred ccCCCcCccHHHHHhccchhhHHHHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHHcCCccccC
Confidence 4666666 5433 3345999999999999999999999866 45643 55 9999999999999999754
No 4
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.11 Score=43.22 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~ 89 (223)
.-+-+++||+++=+|+++|..|.++|.+|++. +.+..+.+..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE 52 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 34679999999999999999999999999983 33444444433
No 5
>PRK06924 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.064 Score=44.30 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=28.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++-+|++||..|+++|.+|++..
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~ 32 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISIS 32 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEe
Confidence 5799999999999999999999999999843
No 6
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.12 Score=42.63 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=29.0
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+-++++|.++.+|+++|..|+++|.+|++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 36799999999999999999999999999843
No 7
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.07 E-value=0.1 Score=41.23 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=50.6
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCcccccceeeeccceeeE-EEecCCCCHHHhhccCCCce
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKI-WLVGNGLTEEEQSKAERGTM 129 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~-WlVGd~l~~~eQ~~ApkGt~ 129 (223)
|+++|++.++|+.++..|.++|++|....+..- ++.. ..++ ++.||..+.+.=..|.+|..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~-~~~~-----------------~~~~~~~~~d~~d~~~~~~al~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS-KAED-----------------SPGVEIIQGDLFDPDSVKAALKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG-GHHH-----------------CTTEEEEESCTTCHHHHHHHHTTSS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch-hccc-----------------ccccccceeeehhhhhhhhhhhhcc
Confidence 789999999999999999999999998322100 1111 2234 89999999877777778877
Q ss_pred eeeccccCC
Q 041887 130 FVPFSQFPP 138 (223)
Q Consensus 130 FipfsQfPp 138 (223)
.+=+. +++
T Consensus 63 ~vi~~-~~~ 70 (183)
T PF13460_consen 63 AVIHA-AGP 70 (183)
T ss_dssp EEEEC-CHS
T ss_pred hhhhh-hhh
Confidence 66666 554
No 8
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.75 E-value=0.13 Score=41.49 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||+++.+|+++|..|.++|.+|++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVV 35 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 57999999999999999999999999876
No 9
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.66 E-value=0.13 Score=42.18 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++.+|+++|..|.++|.+|+++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 579999999999999999999999999883
No 10
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.50 E-value=0.15 Score=41.85 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-||+||.++-||+++|..|+++|.+|++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~ 31 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVN 31 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEE
Confidence 358999999999999999999999999883
No 11
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.48 E-value=0.21 Score=41.56 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=29.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
-+.|++||.++-+|+++|..|+++|.+|++.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 368999999999999999999999999998443
No 12
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.46 E-value=0.015 Score=47.95 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=39.6
Q ss_pred cCCceeeeeeeccCCC---------CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 31 DGSSLAVAVLTNSIPD---------GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 31 dGssLaaAvVlnsIP~---------gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.||++|||+.+.-+.+ ..+.|++.|.+-.+|+++|.+|+++|.+|.+.+
T Consensus 2 ~G~~~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 2 NGSNTTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 4888888776655443 236899999999999999999999999998843
No 13
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.11 Score=43.84 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=32.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
++.||+||.++-+|+++|.+|.++|.+|+... .+..+.++..
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR 45 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 35799999999999999999999999998832 3334444443
No 14
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.14 Score=42.29 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=28.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.||+||+++=||+++|..|+++|..|++.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~ 36 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAA 36 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 5799999999999999999999999999843
No 15
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.37 E-value=0.18 Score=40.68 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+.|++||+++.+|+.+|..|.++|++|++..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 56999999999999999999999999988443
No 16
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.34 E-value=0.24 Score=40.06 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=27.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||.++.+|++++..|+++|.+|++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~ 34 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVI 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999966
No 17
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.23 Score=41.00 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhh
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~ 89 (223)
++..-+.|++||.++=||+++|..|+++|.+|+.. +.++.+.+..+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 52 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAE 52 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 33445789999999999999999999999999983 34555555544
No 18
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.18 Score=41.93 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
+-+++||.++-+|+++|..|+++|.+|++.+ .+..+.+..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 49 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAE 49 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 5689999999999999999999999999833 3444444443
No 19
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=94.15 E-value=0.097 Score=47.60 Aligned_cols=44 Identities=34% Similarity=0.426 Sum_probs=39.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcCC
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFGG 92 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~~ 92 (223)
|=|++||++|=+|.|+|..|++.|++|++ =+.|+-+.|+.++++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~ 52 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA 52 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc
Confidence 56889999999999999999999999999 556778888888775
No 20
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.13 E-value=0.25 Score=40.98 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=31.4
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
++.-.-+.+++||+++-+|+++|..|+++|.+|++.+
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 3444456799999999999999999999999999943
No 21
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.07 E-value=0.27 Score=40.42 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||+++.+|+++|..|+++|.+|++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999876
No 22
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.02 E-value=0.077 Score=49.71 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=37.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch--hHHHHHHhhcCCc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE--DEHEKLIRSFGGK 93 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~--~~y~~lk~~~~~~ 93 (223)
+=...||+++++|++.|.-||+||..|++.++ +.-+.++++..+.
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~ 96 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEK 96 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999443 7778888885444
No 23
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.00 E-value=0.14 Score=48.24 Aligned_cols=179 Identities=20% Similarity=0.316 Sum_probs=102.3
Q ss_pred EEEecCCceeeeeeeccCCC-----C----CceEEEecccchHHHHHHHHHHhcC-cEEEecch-hHHHHHHhh-cCCcc
Q 041887 27 IKVVDGSSLAVAVLTNSIPD-----G----TTQVVIRGILTKVAYATAFALCQKG-IQVVTLRE-DEHEKLIRS-FGGKS 94 (223)
Q Consensus 27 vrvVdGssLaaAvVlnsIP~-----g----t~qV~L~G~~sKva~aiA~aLC~rg-vqV~~~~~-~~y~~lk~~-~~~~~ 94 (223)
+|.-.|||+||=+....|=+ | ...|=+.|++--||.+||..|.-++ +..++.+. +..+.-.-. ++++
T Consensus 137 ~~~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~- 215 (351)
T COG5322 137 TRFTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEE- 215 (351)
T ss_pred EecccCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccc-
Confidence 46778999999876655543 2 2378999999999999999999985 44444211 111111111 3333
Q ss_pred cccceeeeccc-ee----eEEEecCCCCHHHhhccCCCceeeeccc----------cCCC-ccCCCCcc-cccCCcccCC
Q 041887 95 ESKNLLVSRSY-CQ----KIWLVGNGLTEEEQSKAERGTMFVPFSQ----------FPPA-KKRRKDCT-YHLTPAMATP 157 (223)
Q Consensus 95 ~~~~L~~~~~~-~~----K~WlVGd~l~~~eQ~~ApkGt~FipfsQ----------fPp~-~~~RkDC~-Y~~tPAM~~P 157 (223)
...-.+-+++| .| .+|.- --|+|..--|+.= .|-. ...+||-- .+-.|.=.+-
T Consensus 216 ~~~~~i~s~d~~~~~e~i~v~vA----------s~~~g~~I~pq~lkpg~~ivD~g~P~dvd~~vk~~~~V~Ii~GGlV~ 285 (351)
T COG5322 216 LGRGKIMSLDYALPQEDILVWVA----------SMPKGVEIFPQHLKPGCLIVDGGYPKDVDTSVKNVGGVRIIPGGLVE 285 (351)
T ss_pred cCCCeeeeccccccccceEEEEe----------ecCCCceechhhccCCeEEEcCCcCcccccccccCCCeEEecCcccc
Confidence 22223334444 11 44764 1355555444431 1222 11112221 1222221111
Q ss_pred ccc---ccchhhhcccccccchheeeccceeeccCCCcc-cccCc--cCChHHHHHHHHHcCCccc
Q 041887 158 AAL---ENVDSCENWLPRRVMSAWRIGGIVHALEGWNEH-ECGYT--ISNVDTVWDAALRHGFVPL 217 (223)
Q Consensus 158 ~~~---~n~~sCEnwlpRrvmsA~r~aGivHaLEgW~~h-EcG~~--id~id~vW~AAl~HGF~P~ 217 (223)
.+. -++.+- .-||-|-|.||-|--++=++|||-.+ --|.. .|+|+.+=++|-+|||+|+
T Consensus 286 ~s~~it~gi~~~-~~~p~~~l~aClAEtlil~~eg~~~~fS~Grq~~~dk~~~ig~~aekhGF~p~ 350 (351)
T COG5322 286 HSLDITWGIMKI-VGMPVRQLFACLAETLILEFEGEHTNFSWGRQILVDKMEFIGDAAEKHGFKPL 350 (351)
T ss_pred CccccchhHHHH-cccchhhHHHHHHHHHHHHhcchhhhccccccccHHHHHHHHHHHHHcCCCCC
Confidence 111 012222 23599999999999999999999744 34433 3489999999999999996
No 24
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.90 E-value=0.12 Score=42.51 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
-+.|++||.++-+|+++|..|+++|.+|++..+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 367999999999999999999999999998444
No 25
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.83 E-value=0.28 Score=40.05 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=28.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+-|++||+++-+|+++|.+|.++|.+|+++.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46999999999999999999999999988443
No 26
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.15 Score=43.03 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=28.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||.++-+|++||..|+++|.+|++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVD 37 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 6789999999999999999999999999843
No 27
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.63 E-value=0.29 Score=40.34 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=27.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||+++-+|+++|..|+++|.+|++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~ 31 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGI 31 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEE
Confidence 56899999999999999999999999976
No 28
>PRK06194 hypothetical protein; Provisional
Probab=93.62 E-value=0.3 Score=41.34 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++=+|+++|..|+++|.+|++.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 569999999999999999999999999884
No 29
>PRK09186 flagellin modification protein A; Provisional
Probab=93.52 E-value=0.18 Score=41.57 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++-+|+++|..|+++|.+|++.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 679999999999999999999999999984
No 30
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.47 E-value=0.26 Score=41.49 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|-+++||.++=+|+++|..|+++|.+|++.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 6789999999999999999999999999843
No 31
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.45 E-value=0.27 Score=41.11 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.-+.|++||+++=+|++||..|.++|.+|++.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 34789999999999999999999999999883
No 32
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.44 Score=39.38 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||+++-+|+++|..|+++|.+|+..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 358999999999999999999999999883
No 33
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.28 E-value=0.21 Score=45.43 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=39.5
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcCCc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFGGK 93 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~~~ 93 (223)
.-+-+++||++|.+|+++|..|.+||..|++ =++|+-+.|++++..+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~ 53 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK 53 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999 4557788888876554
No 34
>PRK08643 acetoin reductase; Validated
Probab=93.23 E-value=0.36 Score=40.08 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||.++=+|++||.+|+++|.+|++.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~ 33 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVD 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999998843
No 35
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.22 E-value=0.41 Score=39.84 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
..+-+++||+++-+|+++|..|+++|.+|++..
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 346799999999999999999999999999943
No 36
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.22 E-value=0.22 Score=41.55 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhhc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRSF 90 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~~ 90 (223)
+.|++||.++=+|+++|..|+++|.+|++. +++..+.+..++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 579999999999999999999999999883 344455554443
No 37
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.4 Score=39.18 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=29.0
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.+.|++||+++-+|+++|..|+++|.+|++..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEe
Confidence 36799999999999999999999999998843
No 38
>PRK07577 short chain dehydrogenase; Provisional
Probab=93.12 E-value=0.12 Score=42.15 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++-+|+++|.+|+++|.+|+...
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5799999999999999999999999998843
No 39
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.41 Score=39.39 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=29.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+.|++||+++-+|+++|.+|.++|.+|++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 67999999999999999999999999998443
No 40
>PRK06196 oxidoreductase; Provisional
Probab=93.04 E-value=0.27 Score=43.06 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=32.3
Q ss_pred eeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 40 LTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 40 VlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
++|.++-.-+-|++||.++-+|+++|..|.++|.+|++.
T Consensus 18 ~~~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 18 VLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred HhcCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 345554334689999999999999999999999999983
No 41
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.02 E-value=0.45 Score=39.71 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.+++||.++-+|+++|..|.++|.+|++
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~ 41 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVL 41 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 67999999999999999999999999988
No 42
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.23 Score=43.87 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-+++||+++-+|+++|..|+++|.+|++
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil 43 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVIL 43 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999999998
No 43
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.14 Score=42.38 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=29.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
-+-|++||+++-+|+++|..|+++|.+|++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 357999999999999999999999999998544
No 44
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.98 E-value=0.3 Score=44.95 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=42.3
Q ss_pred eeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 35 LAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 35 LaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
..+-.+.+.++---+-++.||++|-+|+++|..|++||.+|+|.. .++-+..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~ 78 (314)
T KOG1208|consen 22 TTALEVTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQ 78 (314)
T ss_pred eecceeeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 344456777776557889999999999999999999999999932 2355555555
No 45
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.94 E-value=0.24 Score=42.31 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||+++-+|+++|..|+++|.+|+..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~ 34 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFAT 34 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999983
No 46
>PRK08264 short chain dehydrogenase; Validated
Probab=92.90 E-value=0.14 Score=42.01 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCc-EEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGI-QVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgv-qV~~~~ 79 (223)
+-|++||.++.+|+++|..|+++|. +|+...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 5699999999999999999999999 888743
No 47
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.15 Score=42.81 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||+++-+|+++|..|+++|.+|+...
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4699999999999999999999999999843
No 48
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.75 E-value=0.27 Score=41.23 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.|++||+.+-+|++||..|+++|..|++.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 589999999999999999999999999843
No 49
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.69 E-value=0.54 Score=39.61 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 42 NSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
|..+-..+-+++||.++=+|++||..|.++|.+|++.
T Consensus 4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~ 40 (265)
T PRK07097 4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN 40 (265)
T ss_pred cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4445556789999999999999999999999999983
No 50
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.52 E-value=0.28 Score=43.90 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=33.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~ 89 (223)
+-|++||+++-+|+++|..|+++|.+|++. +++.-+.+..+
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~ 96 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS 96 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence 579999999999999999999999999983 34444444444
No 51
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.44 Score=42.76 Aligned_cols=31 Identities=42% Similarity=0.476 Sum_probs=28.3
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+-|++||.++=+|+++|..|+++|.+|+..
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~ 38 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLL 38 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3579999999999999999999999999883
No 52
>PRK06182 short chain dehydrogenase; Validated
Probab=92.50 E-value=0.3 Score=41.26 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++.+|+++|..|+++|.+|+..
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999983
No 53
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.49 Score=38.99 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=27.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.+++||.++-+|++++..|.++|.+|++.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~ 36 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVN 36 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999873
No 54
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.18 Score=41.45 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++.+|+++|..|+++|.+|+..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEe
Confidence 5699999999999999999999999999833
No 55
>PRK12742 oxidoreductase; Provisional
Probab=92.37 E-value=0.36 Score=39.41 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=32.4
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec---chhHHHHHHh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL---REDEHEKLIR 88 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~---~~~~y~~lk~ 88 (223)
.+.|++||.++-||+++|..|.++|.+|++. +++..+.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~ 49 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ 49 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH
Confidence 3689999999999999999999999999773 2344444433
No 56
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.36 Score=40.74 Aligned_cols=30 Identities=33% Similarity=0.264 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.+++||+++-+|+++|..|.++|.+|+..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999883
No 57
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.31 E-value=0.34 Score=40.58 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=28.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+-+++||.++-+|+++|..|.++|.+|++.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999999999999999999883
No 58
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.33 Score=40.45 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=27.2
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+|++||.++-+|+++|..|+++|.+|+..
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~ 30 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLV 30 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999999999999883
No 59
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=92.26 E-value=0.63 Score=38.39 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||.++=+|+++|..|.++|.+|++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 31 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVAD 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999998843
No 60
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.22 E-value=0.35 Score=40.64 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=28.7
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+.+++||.++-+|+++|..|.++|.+|++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 3689999999999999999999999999984
No 61
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.21 E-value=0.38 Score=41.30 Aligned_cols=29 Identities=24% Similarity=0.183 Sum_probs=27.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.||+||.+.-||+.++.+|.++|.+|..
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~ 33 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKA 33 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999976
No 62
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.20 E-value=0.61 Score=40.22 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++=+|+++|..|.++|.+|++.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 569999999999999999999999999983
No 63
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.18 E-value=0.26 Score=40.48 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||+++-||+++|..|+++|.+|+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVV 35 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999876
No 64
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.17 E-value=0.26 Score=40.56 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||.++-+|+++|..|+++|.+|++..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 33 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSY 33 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999843
No 65
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.36 Score=41.16 Aligned_cols=31 Identities=26% Similarity=0.198 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++-+|+++|..|.++|.+|++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 5699999999999999999999999999833
No 66
>PRK08589 short chain dehydrogenase; Validated
Probab=92.04 E-value=0.27 Score=41.87 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||.++-+|++||..|+++|.+|++..
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~ 37 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVD 37 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999999999999843
No 67
>PRK12827 short chain dehydrogenase; Provisional
Probab=92.03 E-value=0.69 Score=37.67 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.+++||.++=+|+++|..|+++|.+|++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIV 35 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 67999999999999999999999999987
No 68
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.24 Score=42.92 Aligned_cols=36 Identities=42% Similarity=0.546 Sum_probs=30.5
Q ss_pred cCCC-CCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 43 SIPD-GTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 43 sIP~-gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+|. ..+-|++||+++-+|+++|..|.++|.+|++.
T Consensus 10 ~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~ 46 (306)
T PRK06197 10 DIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLA 46 (306)
T ss_pred ccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 3454 33689999999999999999999999999873
No 69
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.00 E-value=0.38 Score=40.34 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=31.1
Q ss_pred eccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 41 TNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 41 lnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+++..-.-+-+++||.++-+|+++|..|.++|.+|+.
T Consensus 3 ~~~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~ 39 (253)
T PRK08993 3 LDAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVG 39 (253)
T ss_pred ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4444333468999999999999999999999999987
No 70
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=91.97 E-value=0.3 Score=39.78 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+-|++||.++-+|+++|..|+++|.+|++...
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r 34 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYF 34 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 46899999999999999999999999999433
No 71
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.96 E-value=0.62 Score=38.78 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=29.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+.|++||.++=+|+++|..|.++|.+|++.+.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 67999999999999999999999999998543
No 72
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=91.91 E-value=0.49 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=27.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.||+||++.-||++++..|.++|++|..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~ 34 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKA 34 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 58999999999999999999999999975
No 73
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.90 E-value=0.23 Score=41.39 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
.+.+++||.++-+|+++|..|+++|.+|++...
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 477999999999999999999999999998443
No 74
>PRK06398 aldose dehydrogenase; Validated
Probab=91.90 E-value=0.21 Score=42.27 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||.++-+|+++|..|+++|.+|++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 679999999999999999999999999984
No 75
>PRK09135 pteridine reductase; Provisional
Probab=91.88 E-value=0.4 Score=39.05 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=28.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+.||+||+++=||+.+|..|+++|.+|+..
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~ 36 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIH 36 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3679999999999999999999999999883
No 76
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.42 Score=39.51 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++-+|+++|..|+++|.+|+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 6899999999999999999999999998844
No 77
>PRK05650 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.71 Score=38.98 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=26.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|++||.++-+|+++|..|.++|.+|+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~ 29 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLAL 29 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999999988
No 78
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.74 E-value=0.55 Score=36.24 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=31.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCc-EEEecc----hhHHHHHHhhcC
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGI-QVVTLR----EDEHEKLIRSFG 91 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgv-qV~~~~----~~~y~~lk~~~~ 91 (223)
|-|++||.++-+|+++|..|+++|- +|++.+ .+..+.+..+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~ 48 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK 48 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc
Confidence 4589999999999999999999954 555532 244555544444
No 79
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.66 E-value=0.52 Score=39.54 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=33.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhhc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRSF 90 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~~ 90 (223)
+.+++||+++=+|+++|..|.++|.+|++. +++..+.+..+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF 50 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 579999999999999999999999999883 334445554443
No 80
>PRK05717 oxidoreductase; Validated
Probab=91.66 E-value=0.59 Score=39.01 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=31.0
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+++..-+-|++||.++-+|+++|..|.++|.+|++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 344445679999999999999999999999999984
No 81
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.59 E-value=0.26 Score=40.68 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++-+|+++|.+|.++|.+|++..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAA 32 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999999998843
No 82
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.58 E-value=0.75 Score=40.38 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=27.1
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|++||++..+|+.++.+|.++|++|...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l 30 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCL 30 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 59999999999999999999999999873
No 83
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.57 E-value=0.49 Score=38.73 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++-+|+++|..|.++|.+|+++.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999998843
No 84
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.46 Score=40.49 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++-+|++||..|.++|.+|++.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 568999999999999999999999999983
No 85
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.57 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++=+|+++|..|.++|.+|++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~ 33 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVA 33 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5699999999999999999999999999843
No 86
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.49 E-value=0.24 Score=41.18 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.0
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+.|++||.++-||+++|.+|+++|.+|+...
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 36799999999999999999999999998843
No 87
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.43 E-value=0.53 Score=38.43 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||.++.+|.++|..|.++|.+|+..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999983
No 88
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.34 E-value=0.54 Score=38.51 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++-+|+++|..|.++|.+|++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITG 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 5799999999999999999999999998843
No 89
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.29 E-value=0.68 Score=40.26 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=34.1
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhhc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRSF 90 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~~ 90 (223)
-+-|++||.++-+|+++|..|.++|.+|++.. .++-+.+..++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 36799999999999999999999999998833 34445555544
No 90
>PRK06101 short chain dehydrogenase; Provisional
Probab=91.21 E-value=0.54 Score=39.11 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++=+|+++|..|+++|.+|++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~ 32 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACG 32 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEE
Confidence 4589999999999999999999999999843
No 91
>PRK08017 oxidoreductase; Provisional
Probab=91.18 E-value=0.53 Score=38.84 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=27.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++-+|+++|..|.++|.+|++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~ 32 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA 32 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 469999999999999999999999999883
No 92
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=91.11 E-value=0.94 Score=37.93 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=27.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+-+++||+.+-+|+++|..|+++|.+|++
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi 36 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVI 36 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 367999999999999999999999999987
No 93
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.54 Score=41.13 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||+++-+|+++|..|+++|.+|++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999983
No 94
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.04 E-value=0.83 Score=38.09 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+.+++||.++=+|+++|..|+++|.+|++.+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecC
Confidence 67899999999999999999999999998543
No 95
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=90.96 E-value=0.34 Score=41.45 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=24.9
Q ss_pred EEEecccchHHHHHHHHHHhcC--cEEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKG--IQVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rg--vqV~~ 77 (223)
||+||++.-+|+.++..|.++| .+|.+
T Consensus 2 vlvtGatG~lG~~l~~~L~~~g~~~~V~~ 30 (367)
T TIGR01746 2 VLLTGATGFLGAYLLEELLRRSTQAKVIC 30 (367)
T ss_pred EEEeccchHHHHHHHHHHHhCCCCCEEEE
Confidence 8999999999999999999999 66776
No 96
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.90 E-value=1 Score=38.11 Aligned_cols=31 Identities=29% Similarity=0.211 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||+++=+|++||..|.++|.+|++.+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~ 41 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILD 41 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5799999999999999999999999999843
No 97
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=90.71 E-value=0.38 Score=39.65 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.1
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecchh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRED 81 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~ 81 (223)
.+.+++||+++=+|+++|.+|+++|.+|++...+
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 3679999999999999999999999999985443
No 98
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.70 E-value=1.2 Score=36.83 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-||+||.++=+|+++|.+|.++|.+|++..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~ 38 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIAD 38 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 5799999999999999999999999999843
No 99
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.69 E-value=0.36 Score=39.88 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
..+++||.++-+|+++|..|+++|.+|++.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEE
Confidence 358999999999999999999999999884
No 100
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.60 E-value=0.69 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||.++=+|+++|..|+++|.+|++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~ 32 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYD 32 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999999999843
No 101
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.50 E-value=0.71 Score=37.67 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=28.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+-|+++|+++.+|+++|.+|.++|.+|++..+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 57999999999999999999999999998543
No 102
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.45 E-value=0.71 Score=38.53 Aligned_cols=30 Identities=33% Similarity=0.274 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||+++=+|+++|.+|.++|.+|++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 579999999999999999999999999883
No 103
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.44 E-value=0.74 Score=37.92 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=27.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-|++||+++-+|+++|..|.++|.+|++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~ 31 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLAL 31 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 45899999999999999999999999988
No 104
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.43 E-value=0.72 Score=38.35 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++-+|+++|.+|.++|.+|++.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4699999999999999999999999998843
No 105
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.43 E-value=0.6 Score=38.66 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=29.2
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.-+-||+||.++-+|.++|..|.++|.+|+..+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 345799999999999999999999999998844
No 106
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.43 E-value=0.7 Score=39.01 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||+++-+|+++|..|.++|.+|++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~ 33 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIAT 33 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEE
Confidence 458999999999999999999999999883
No 107
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.33 E-value=0.77 Score=37.52 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=27.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-|++||.++=+|+++|..|+++|.+|++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~ 34 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAV 34 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999987
No 108
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.32 E-value=1.5 Score=37.05 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+-|++||.++=||+++|..|.++|.+|++.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 35699999999999999999999999998833
No 109
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.31 E-value=0.97 Score=36.95 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=29.4
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.-+.++++|.++-+|+++|..|.++|.+|++.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 346799999999999999999999999999843
No 110
>PRK09134 short chain dehydrogenase; Provisional
Probab=90.26 E-value=1.2 Score=37.31 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=27.7
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
-+.+|+||+++-+|+++|..|.++|.+|++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~ 38 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAV 38 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 357999999999999999999999999977
No 111
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.26 E-value=0.51 Score=39.85 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.8
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|-|++||.. +=+|+++|..|+++|.+|++.+
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 578999999 5799999999999999999843
No 112
>PLN02253 xanthoxin dehydrogenase
Probab=90.25 E-value=0.74 Score=38.96 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=28.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||.++=+|+++|.+|.++|.+|++..
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~ 49 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVD 49 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 5799999999999999999999999999843
No 113
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.21 E-value=0.8 Score=37.54 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.+++||+++-+|+++|.+|.++|.+|++.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 578999999999999999999999999883
No 114
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.75 Score=38.31 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||.++=+|+++|..|.++|.+|++.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999999999998843
No 115
>PRK06953 short chain dehydrogenase; Provisional
Probab=90.15 E-value=0.68 Score=37.96 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.++-||+++|..|.++|.+|++.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~ 31 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIAT 31 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEE
Confidence 468999999999999999999999999884
No 116
>PRK08263 short chain dehydrogenase; Provisional
Probab=90.12 E-value=0.86 Score=38.69 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||+++-+|+++|.+|.++|.+|+..
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~ 33 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVAT 33 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999883
No 117
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.12 E-value=0.75 Score=38.84 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++=+|+++|..|+++|.+|++.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999999999999994
No 118
>PRK07985 oxidoreductase; Provisional
Probab=90.08 E-value=0.41 Score=41.81 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||+++-+|++||..|+++|.+|++.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 579999999999999999999999999984
No 119
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.96 E-value=0.48 Score=38.99 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=27.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-|++||.++-+|+++|..|+++|.+|++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 56899999999999999999999999987
No 120
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=89.91 E-value=0.58 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.++=+|++||..|+++|.+|++.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 38 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFT 38 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 678999999999999999999999999873
No 121
>PRK07069 short chain dehydrogenase; Validated
Probab=89.90 E-value=0.47 Score=38.91 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|++||.++-+|+++|..|.++|.+|++.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~ 30 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTD 30 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 79999999999999999999999998843
No 122
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.89 E-value=0.84 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||+++=+|+++|..|+++|.+|++.+
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 4589999999999999999999999999843
No 123
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.84 E-value=0.5 Score=38.43 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.++++|.++-+|+++|..|+++|.+|++.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999885
No 124
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.82 E-value=0.8 Score=38.22 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-+++||.++=+|+++|..|+++|.+|++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999987
No 125
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.78 E-value=0.59 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||.++=+|+++|..|+++|.+|+..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~ 32 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAIN 32 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999999883
No 126
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.73 E-value=0.54 Score=39.34 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++=+|+++|..|.++|.+|++.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~ 38 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALF 38 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999999999999984
No 127
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.68 E-value=0.89 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-||+||.++=+|++||.+|.++|.+|++.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 569999999999999999999999999983
No 128
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=89.65 E-value=0.65 Score=37.85 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||.++=+|+++|..|+++|..|.+
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~ 35 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGL 35 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999987
No 129
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.65 E-value=0.88 Score=37.49 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-||+||.++=+|+++|..|+++|.+|++.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 579999999999999999999999999983
No 130
>PRK07074 short chain dehydrogenase; Provisional
Probab=89.58 E-value=0.93 Score=37.66 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||+++-+|+++|..|.++|.+|++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~ 33 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALD 33 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999999843
No 131
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.57 E-value=0.92 Score=38.52 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=27.8
Q ss_pred ceEEEecc--cchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGI--LTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~--~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||+ .+=+|+++|..|.++|.+|++..
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 56899999 78999999999999999999843
No 132
>PRK12828 short chain dehydrogenase; Provisional
Probab=89.55 E-value=0.5 Score=38.14 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=28.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+-|++||+++-+|+++|..|+++|.+|+..++
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGR 39 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeC
Confidence 45999999999999999999999999988443
No 133
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.54 E-value=1 Score=37.55 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=27.0
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|++||.++=+|+++|.+|+++|.+|+..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~ 30 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIAT 30 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 48999999999999999999999999983
No 134
>PRK05875 short chain dehydrogenase; Provisional
Probab=89.52 E-value=0.92 Score=38.20 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+.|++||+++=+|+++|..|.++|.+|+..+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999999999999844
No 135
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.40 E-value=1 Score=37.36 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=28.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|++||.++=+|+++|..|.++|.+|++.+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5799999999999999999999999999843
No 136
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.38 E-value=1.5 Score=37.27 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=28.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.+.+++||+++-||+++|..|.++|.+|++..
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 45799999999999999999999999998843
No 137
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=89.34 E-value=0.51 Score=38.65 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=26.0
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
|++||.++=+|+++|..|+++|.+|+..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~ 28 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVH 28 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 5899999999999999999999999873
No 138
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.29 E-value=0.99 Score=37.76 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=32.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
+-|++||.++=+|++||..|+++|.+|++.+ .++.+.+..+
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAAD 50 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 6799999999999999999999999998833 3444444443
No 139
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=89.08 E-value=0.98 Score=39.56 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=32.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~ 89 (223)
+-|++||.++=+|+++|..|.++|.+|++. +.+.-+.+..+
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~ 49 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQE 49 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999984 33444444443
No 140
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.08 E-value=0.9 Score=41.05 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=32.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
.+-|++||+++=+|+++|..|+++|.+|++.. ++.-+.+..+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~ 50 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE 50 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 36799999999999999999999999999833 3444444333
No 141
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.04 E-value=0.43 Score=40.70 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
|++||++.+||+.++.+|.++|++|...
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~ 29 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVA 29 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEE
Confidence 7899999999999999999999998883
No 142
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.75 E-value=0.85 Score=45.81 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=37.2
Q ss_pred CCceeeeeeeccCCC-----CCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 32 GSSLAVAVLTNSIPD-----GTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 32 GssLaaAvVlnsIP~-----gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|.+...+.++.-+|+ +-+-||++|++..+|++++..|+++|++|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vva 109 (576)
T PLN03209 59 GATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRA 109 (576)
T ss_pred cchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEE
Confidence 344445666777784 3357999999999999999999999999987
No 143
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.75 E-value=1.2 Score=37.22 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||.++-+|+++|..|+++|.+|+..+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3589999999999999999999999999843
No 144
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.71 E-value=0.72 Score=38.33 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.3
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+.+++||+++-+|+++|..|.++|.+|+..
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999999999999999999883
No 145
>PRK12746 short chain dehydrogenase; Provisional
Probab=88.70 E-value=0.67 Score=38.34 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.+++||+++-+|+++|.+|.++|.+|++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i 35 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAI 35 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999976
No 146
>PRK05693 short chain dehydrogenase; Provisional
Probab=88.68 E-value=1.1 Score=37.90 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||+++=+|+++|..|.++|.+|+..
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~ 31 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999999883
No 147
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.64 E-value=0.81 Score=37.58 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=27.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.+++||+++=+|+++|..|+++|.+|++
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~ 34 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVV 34 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEE
Confidence 57999999999999999999999999987
No 148
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=88.60 E-value=0.71 Score=39.00 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=28.0
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+.|+++|++..+|++++..|.++|.+|+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 468999999999999999999999999976
No 149
>PRK06484 short chain dehydrogenase; Validated
Probab=88.35 E-value=1.3 Score=41.17 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=33.7
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
.-+-+++||.++-+|+++|..|.++|.+|++.+ .+.-+.+..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 346789999999999999999999999999843 3444444443
No 150
>PRK06138 short chain dehydrogenase; Provisional
Probab=88.31 E-value=1.3 Score=36.39 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++-+|+++|..|.++|.+|++.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 35 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVA 35 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEe
Confidence 578999999999999999999999999883
No 151
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=88.08 E-value=0.75 Score=38.53 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.++-+|+++|..|.++|.+|++.
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 568999999999999999999999999983
No 152
>PRK06128 oxidoreductase; Provisional
Probab=88.04 E-value=0.7 Score=40.16 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=27.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||.++=+|+++|..|+++|.+|++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i 84 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIAL 84 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEE
Confidence 67999999999999999999999999987
No 153
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.01 E-value=1.4 Score=36.15 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=28.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||.++-+|+++|.+|.++|.+|+...
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5699999999999999999999999998833
No 154
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=87.95 E-value=0.85 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.2
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
..+.||+||..+-+|+++|..|.++|.+|++
T Consensus 4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~ 34 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARALAREGARVVV 34 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEE
Confidence 4567999999999999999999999999776
No 155
>PRK12743 oxidoreductase; Provisional
Probab=87.95 E-value=0.94 Score=37.93 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||+++=||+++|..|.++|.+|++
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~ 31 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGI 31 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 56899999999999999999999999987
No 156
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.86 E-value=0.71 Score=37.71 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=28.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+-+++||.++=+|+++|..|.++|.+|++.++
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r 37 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGAQVYGVDK 37 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999999999999999999999988443
No 157
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.78 E-value=1.3 Score=37.81 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.. +=+|++||..|+++|.+|++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 578899997 689999999999999999984
No 158
>PLN02583 cinnamoyl-CoA reductase
Probab=87.74 E-value=1 Score=39.35 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=27.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
-+.|++||.+.-+|++|+..|.++|++|..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~ 35 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHA 35 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 357999999999999999999999999987
No 159
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=87.59 E-value=0.78 Score=37.12 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.4
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|++||.++-+|+.+|..|.++|.+|++..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~ 29 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITY 29 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999999999999999999998843
No 160
>PRK07201 short chain dehydrogenase; Provisional
Probab=87.55 E-value=1.7 Score=41.60 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
+-+++||+++-+|+++|..|+++|.+|++.. .+..+.+..+
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 414 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAE 414 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999999843 3444444433
No 161
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=87.52 E-value=1 Score=38.09 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
..|++||.++=+|+++|..|+++|.+|++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~ 31 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLH 31 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEE
Confidence 468999999999999999999999999983
No 162
>PRK12747 short chain dehydrogenase; Provisional
Probab=87.42 E-value=1.1 Score=37.28 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=27.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-+++||.++=+|+++|..|.++|.+|++
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAI 33 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEE
Confidence 57899999999999999999999999987
No 163
>PLN00198 anthocyanidin reductase; Provisional
Probab=87.33 E-value=0.97 Score=39.65 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 45 PDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 45 P~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|..-+.||+||++.-+|+.++.+|.++|.+|..
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~ 38 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNT 38 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEE
Confidence 555678999999999999999999999999864
No 164
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.26 E-value=1.6 Score=36.41 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.8
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+-|++||.++-+|+++|..|.++|.+|++.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~ 41 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999999999999999883
No 165
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.07 E-value=0.87 Score=39.30 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=27.3
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++ =+|++||.+|.++|.+|++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEe
Confidence 5688999995 89999999999999999984
No 166
>PRK09242 tropinone reductase; Provisional
Probab=87.07 E-value=1.7 Score=36.22 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.4
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+.+++||+++=+|+++|..|+++|.+|++.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIV 39 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 3679999999999999999999999999883
No 167
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=87.05 E-value=1.3 Score=36.54 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=27.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-+++||.++=+|+++|..|.++|.+|++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~ 35 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVI 35 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 67999999999999999999999999987
No 168
>PRK07832 short chain dehydrogenase; Provisional
Probab=87.02 E-value=1.7 Score=36.90 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.9
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+++||+++=+|+++|..|+++|.+|++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~ 30 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLT 30 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999999999999883
No 169
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.93 E-value=0.89 Score=38.00 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=26.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.|++||.++=+|+++|..|.++|.+|++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~ 37 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVA 37 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999999999999665
No 170
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=86.91 E-value=0.72 Score=35.74 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=30.4
Q ss_pred ecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCc
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGK 93 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~ 93 (223)
+|++.++|+.||..|.++|++|.+.+-++++.....+...
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 46 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEY 46 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTT
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhh
Confidence 7999999999999999999998885555555433334444
No 171
>PRK06198 short chain dehydrogenase; Provisional
Probab=86.90 E-value=2.6 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.6
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcE-EEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQ-VVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvq-V~~~~ 79 (223)
+.|+++|+++=+|+++|..|+++|.+ |++..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~ 38 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICG 38 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEc
Confidence 56899999999999999999999999 77733
No 172
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.57 E-value=2 Score=36.44 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.1
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.+| =+|+++|..|.++|.+|++.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~ 42 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVT 42 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 6789999995 79999999999999999883
No 173
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.54 E-value=0.97 Score=40.14 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.++=+|+++|.+|+++|.+|++.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999999999999884
No 174
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.48 E-value=1.9 Score=39.32 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.-+.|++||.+--||++++.+|.++|++|+..+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 345799999999999999999999999999843
No 175
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.23 E-value=1.6 Score=38.31 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+-+++||..+=+|+++|..|+++|.+|++.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~ 42 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVVVN 42 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 3679999999999999999999999999983
No 176
>PRK06172 short chain dehydrogenase; Provisional
Probab=86.13 E-value=2 Score=35.57 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.++=+|+++|..|.++|.+|+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~ 37 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVA 37 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 679999999999999999999999999883
No 177
>PRK07041 short chain dehydrogenase; Provisional
Probab=86.10 E-value=1.4 Score=35.90 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.9
Q ss_pred EEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 52 VIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 52 ~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
++||+++-+|+++|..|+++|.+|++..+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r 29 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASR 29 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57999999999999999999999988443
No 178
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.94 E-value=1.2 Score=38.71 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||+++=||+++|..|.++|.+|++.+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~ 77 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVY 77 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5699999999999999999999999998843
No 179
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=85.89 E-value=1.2 Score=36.53 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=25.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcC--cEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKG--IQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rg--vqV~~ 77 (223)
+.|++||.++-+|++||.+|+++| ++|+.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 368999999999999999999994 66655
No 180
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=85.59 E-value=2 Score=37.93 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=27.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcC-cEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKG-IQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rg-vqV~~~ 78 (223)
+-|++||.++=+|+++|..|+++| .+|++.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~ 34 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMA 34 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEE
Confidence 468899999999999999999999 999884
No 181
>PRK12367 short chain dehydrogenase; Provisional
Probab=85.47 E-value=1.2 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||+++=+|+++|.+|.++|.+|++..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999999999999998733
No 182
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.42 E-value=1.5 Score=40.47 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
|=|+.||++|=+|+++|..|.++|.+++. -+.++.+.++++
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~ 55 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEE 55 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHH
Confidence 45788999999999999999999997554 366788777555
No 183
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=85.19 E-value=1.2 Score=40.37 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred CceEEEecc--cchHHHHHHHHHHhcCcEEEe-cchhHHHHHH
Q 041887 48 TTQVVIRGI--LTKVAYATAFALCQKGIQVVT-LREDEHEKLI 87 (223)
Q Consensus 48 t~qV~L~G~--~sKva~aiA~aLC~rgvqV~~-~~~~~y~~lk 87 (223)
-|-+++||+ ++=+|+|+|.+|+++|.+|++ .+.++-+.+.
T Consensus 9 gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~~~~~~l~~~~ 51 (303)
T PLN02730 9 GKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVPALNIFE 51 (303)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeCcchhhHHH
Confidence 456888999 699999999999999999998 3334444443
No 184
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.15 E-value=2.6 Score=34.43 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+++||..+=+|+++|..|+++|.+|++..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999998843
No 185
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=85.13 E-value=1.3 Score=37.75 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||++ +=+|++||..|+++|.+|++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 678999986 679999999999999999873
No 186
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.10 E-value=2 Score=36.50 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcC-cEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKG-IQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rg-vqV~~~ 78 (223)
+-|++||+++-+|+++|..|.++| .+|++.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~ 39 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLA 39 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE
Confidence 358999999999999999999995 999883
No 187
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=85.10 E-value=1.4 Score=35.97 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=26.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-|++||.++=||++++..|.++|.+|++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~ 30 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAV 30 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999975
No 188
>PRK07831 short chain dehydrogenase; Provisional
Probab=85.07 E-value=2.3 Score=35.65 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=27.1
Q ss_pred ceEEEeccc-chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL-TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~-sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.+++||.+ +=+|+++|..|.++|.+|++.
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 679999998 469999999999999999983
No 189
>PRK06123 short chain dehydrogenase; Provisional
Probab=85.01 E-value=1.7 Score=35.63 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-+++||.++=+|.++|..|+++|..|++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~ 31 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCL 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 35899999999999999999999999877
No 190
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.66 E-value=2 Score=37.13 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=27.2
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.+++||.. +=+|++||..|.++|.+|++.
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~ 42 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFT 42 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 678999997 679999999999999999884
No 191
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.57 E-value=1.3 Score=37.44 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=26.8
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
||+||.+--||++++..|.++|.+|...
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 8999999999999999999999999993
No 192
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.43 E-value=13 Score=34.01 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=50.3
Q ss_pred cCCceEEEecCCceeeee----------eeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 22 NPELKIKVVDGSSLAVAV----------LTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAv----------VlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
.|+...++--|-.|..+. .+...+...+.+++.|. .++|+.+|..|-++|++|++ .+.+..+.++.+
T Consensus 195 ~p~~~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 195 IPRGDTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred cCCCCcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 467777777777776644 22233334678999998 89999999999999999988 466777777665
Q ss_pred c
Q 041887 90 F 90 (223)
Q Consensus 90 ~ 90 (223)
.
T Consensus 274 ~ 274 (453)
T PRK09496 274 L 274 (453)
T ss_pred C
Confidence 4
No 193
>PRK06484 short chain dehydrogenase; Validated
Probab=84.34 E-value=2.2 Score=39.70 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHhhc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIRSF 90 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~~~ 90 (223)
+-+++||.++=+|+++|..|.++|.+|+.. +.++.+.+..++
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL 49 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 568899999999999999999999999883 345555554443
No 194
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.23 E-value=2.4 Score=36.84 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.1
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
|-|++||.. +=+|+++|..|.++|.+|++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~ 37 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFT 37 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 678999997 579999999999999999984
No 195
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=83.97 E-value=1.4 Score=41.91 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||+++-+|+++|..|+++|.+|+..
T Consensus 179 K~VLITGASgGIG~aLA~~La~~G~~Vi~l 208 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELHQQGAKVVAL 208 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 689999999999999999999999999873
No 196
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.91 E-value=1.8 Score=38.92 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=27.5
Q ss_pred CceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
-|-++.||.. +=+|+|+|..|.++|.+|++.
T Consensus 8 gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 8 GKIAFIAGIGDDQGYGWGIAKALAEAGATILVG 40 (299)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 4568889995 789999999999999999993
No 197
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.90 E-value=1.5 Score=37.25 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=26.7
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++ =+|+++|..|.++|.+|++.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~ 40 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFT 40 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEE
Confidence 4588999996 69999999999999999984
No 198
>PRK08219 short chain dehydrogenase; Provisional
Probab=83.89 E-value=2.7 Score=33.80 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=27.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+|+||.+.-+|++++..|+++ .+|+...
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~ 33 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-HTLLLGG 33 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-CCEEEEe
Confidence 57999999999999999999999 9988843
No 199
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.79 E-value=5 Score=33.17 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecch--hHHHHHHhhcCCcccccceeeeccceeeE-EEecCCCCHHHhhccCC
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLRE--DEHEKLIRSFGGKSESKNLLVSRSYCQKI-WLVGNGLTEEEQSKAER 126 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~--~~y~~lk~~~~~~~~~~~L~~~~~~~~K~-WlVGd~l~~~eQ~~Apk 126 (223)
.|+++|++-+||+++...|-++|++|..... +....+. ..+ |..||..+......+.+
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-------------------~~v~~~~~d~~~~~~l~~a~~ 62 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-------------------GGVEVVLGDLRDPKSLVAGAK 62 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-------------------CCcEEEEeccCCHhHHHHHhc
Confidence 5889999999999999999999999999222 2222222 223 77777777777777777
Q ss_pred Cceeeecc
Q 041887 127 GTMFVPFS 134 (223)
Q Consensus 127 Gt~Fipfs 134 (223)
|..+.=+.
T Consensus 63 G~~~~~~i 70 (275)
T COG0702 63 GVDGVLLI 70 (275)
T ss_pred cccEEEEE
Confidence 77775554
No 200
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=83.66 E-value=2.2 Score=34.71 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||.++=+|+++|..|.++|.+|+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 30 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAAN 30 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 357999999999999999999999999873
No 201
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.56 E-value=1.6 Score=37.12 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.4
Q ss_pred ceEEEecc--cchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGI--LTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~--~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||. .+=+|+++|..|+++|.+|++.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFT 38 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 57899997 4579999999999999999983
No 202
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=83.56 E-value=1.6 Score=37.89 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=27.1
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|++||++.-||+++|.+|.++|.+|++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 58999999999999999999999999873
No 203
>PLN02650 dihydroflavonol-4-reductase
Probab=83.29 E-value=1.7 Score=38.48 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=27.8
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
-+.||+||++.-||++++.+|.++|.+|+.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~ 34 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRA 34 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEE
Confidence 357999999999999999999999999986
No 204
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=83.27 E-value=1.6 Score=37.23 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=27.2
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|++||.+.-+|+.+|.+|.++|.+|...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~ 30 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVL 30 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEE
Confidence 58999999999999999999999999883
No 205
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=83.21 E-value=1.6 Score=36.90 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=26.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|+++|++..||++++..|.++|.+|+..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 48999999999999999999999999873
No 206
>PRK08278 short chain dehydrogenase; Provisional
Probab=83.19 E-value=1.8 Score=36.98 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-+++||+++=+|++||..|.++|.+|++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5799999999999999999999999998843
No 207
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.19 E-value=1.7 Score=37.51 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=27.0
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||+.+ =+|+|||..|+++|.+|++.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~ 38 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFT 38 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEE
Confidence 5688999986 79999999999999999884
No 208
>PLN02686 cinnamoyl-CoA reductase
Probab=83.11 E-value=1.7 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
...+.||+||.+.-||++++.+|.++|++|..
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~ 82 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRI 82 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEE
Confidence 34568999999999999999999999999976
No 209
>PRK05599 hypothetical protein; Provisional
Probab=83.06 E-value=2.8 Score=35.25 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=30.5
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhhc
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRSF 90 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~~ 90 (223)
-|++||+++=+|+++|..|+ +|.+|++.. +++-+.+..++
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l 43 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDL 43 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 47899999999999999999 599999933 34444444443
No 210
>PLN02214 cinnamoyl-CoA reductase
Probab=82.79 E-value=1.8 Score=38.71 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=27.8
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+.||+||.+.-+|++++.+|.++|++|..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~ 39 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKG 39 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence 357999999999999999999999999987
No 211
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.63 E-value=0.84 Score=40.82 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=27.2
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcE-EEecch
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQ-VVTLRE 80 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvq-V~~~~~ 80 (223)
.+.|+++|+ .-.|+|||.+|.+.|++ |.+.+.
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeC
Confidence 368999999 69999999999999997 877443
No 212
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=82.52 E-value=3 Score=35.04 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=26.4
Q ss_pred eEEEecccchHHHHHHHHHHh----cCcEEEecc
Q 041887 50 QVVIRGILTKVAYATAFALCQ----KGIQVVTLR 79 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~----rgvqV~~~~ 79 (223)
-|++||.++=+|+++|..|++ .|.+|++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEE
Confidence 378999999999999999998 699998843
No 213
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.50 E-value=2.4 Score=37.67 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=27.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+.||+||++.=||+.++.+|.++|.+|+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 446999999999999999999999999987
No 214
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.44 E-value=3.2 Score=35.40 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.5
Q ss_pred ceEEEecc--cchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGI--LTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~--~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||. ++=+|+|+|..|+++|.+|++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 57899997 4679999999999999999884
No 215
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=82.38 E-value=1.7 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=26.2
Q ss_pred eEEEecccchHHHHHHHHHHhcC--cEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKG--IQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rg--vqV~~~ 78 (223)
.||+||++..+|++++..|.++| ++|+..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 38999999999999999999987 888874
No 216
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=82.20 E-value=1.8 Score=41.21 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.0
Q ss_pred CceEEEecc----------------cchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGI----------------LTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~----------------~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+.|++||. +.|+|+++|.+|.++|.+|++.+
T Consensus 188 gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 188 GKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 368999998 57899999999999999998843
No 217
>PRK06720 hypothetical protein; Provisional
Probab=82.02 E-value=3.9 Score=33.85 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=28.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
-+-+++||+.+=+|+++|..|+++|.+|.+.+
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 35788999999999999999999999999843
No 218
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=81.59 E-value=3 Score=34.64 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=25.6
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|+++|++-++|+.|+.+|-++|.+|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~ 27 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRA 27 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999999888
No 219
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.46 E-value=2.2 Score=35.99 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=27.1
Q ss_pred ceEEEeccc--chHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGIL--TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-|++||.+ +=+|+++|..|.++|.+|++.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 678999998 479999999999999999883
No 220
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=81.40 E-value=2.6 Score=38.96 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.3
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+..-+.|++||.+.-+|++++..|.++|++|+...
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4444455799999999999999999999999998843
No 221
>PLN02240 UDP-glucose 4-epimerase
Probab=80.97 E-value=2.4 Score=37.05 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=28.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++||.+.-||++++..|.++|.+|+..
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVI 35 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999884
No 222
>PRK07791 short chain dehydrogenase; Provisional
Probab=80.97 E-value=2.4 Score=36.77 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=27.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+-+++||..+=+|++||..|.++|.+|++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~ 36 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVN 36 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 578999999999999999999999999883
No 223
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=80.65 E-value=2.1 Score=37.59 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=26.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.||+||.+.=||++++..|+++|.+|+.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~ 30 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVV 30 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEE
Confidence 57999999999999999999999987554
No 224
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=80.32 E-value=4.1 Score=36.41 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.3
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+-+|+||+++=+|+|||..|++.|-+|++.
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~ 38 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVIT 38 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4567889999999999999999999999993
No 225
>PRK05855 short chain dehydrogenase; Validated
Probab=79.86 E-value=5 Score=36.98 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.+-++++|+++=+|+++|..|.++|.+|++.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~ 346 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASD 346 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 345789999999999999999999999998833
No 226
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=79.69 E-value=2.9 Score=39.61 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=33.3
Q ss_pred eccCCCCCc----eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 41 TNSIPDGTT----QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 41 lnsIP~gt~----qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
--.||-|.+ .||+||++--||+.++.+|.++|.+|+..
T Consensus 109 ~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~l 150 (436)
T PLN02166 109 TGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVI 150 (436)
T ss_pred cCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 356777765 79999999999999999999999999984
No 227
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.54 E-value=2.8 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.||+||.+.=+|++++..|.++|.+|..
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~ 34 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINA 34 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999976
No 228
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=79.39 E-value=2.8 Score=33.82 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=25.4
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
||++|++.=||++++.+|.++|.+|+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~ 27 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIV 27 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccc
Confidence 789999999999999999999999775
No 229
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.39 E-value=2.8 Score=37.16 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=28.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.||+||.+.=+|+++|..|.++|.+|+..+
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 6799999999999999999999999998733
No 230
>PRK07775 short chain dehydrogenase; Provisional
Probab=79.37 E-value=5.3 Score=34.09 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=27.2
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+-|++||+++=+|+++|..|.++|.+|+.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~ 39 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVAL 39 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 46999999999999999999999999977
No 231
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=78.72 E-value=4.3 Score=40.64 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=28.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+-|++||.++-+|+++|..|.++|.+|++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~ 444 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLA 444 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 3679999999999999999999999999983
No 232
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=78.57 E-value=4.6 Score=37.02 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=33.7
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcCC
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFGG 92 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~~ 92 (223)
++-+.+||..|-+|||||..|.++|.+|++ .+...-+.--..++.
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g 60 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG 60 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence 456788999999999999999999999999 333333433344443
No 233
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=78.53 E-value=1.9 Score=36.02 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=26.5
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
||+||++.-+|++++..|.++|++|..++
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 29 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILT 29 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEe
Confidence 68999999999999999999999998733
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.13 E-value=3.9 Score=34.25 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=32.1
Q ss_pred ceEEEeccc----chHHHHHHHHHHhcCcEEEe-cchhHHHHHHhhc
Q 041887 49 TQVVIRGIL----TKVAYATAFALCQKGIQVVT-LREDEHEKLIRSF 90 (223)
Q Consensus 49 ~qV~L~G~~----sKva~aiA~aLC~rgvqV~~-~~~~~y~~lk~~~ 90 (223)
.-++|.|.+ |-+|.||+..+|++|+.|.. ...+-++.|+...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~ 94 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR 94 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc
Confidence 458898887 67999999999999999998 4557778887653
No 235
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=77.90 E-value=2.6 Score=36.65 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=23.5
Q ss_pred EEeccc-chHHHHHHHHHHhcCcEEEecc
Q 041887 52 VIRGIL-TKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 52 ~L~G~~-sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|+|... +++|+|||.+|.++|.+|++.+
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEc
Confidence 455554 7999999999999999999854
No 236
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.36 E-value=3.3 Score=34.58 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=27.7
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~~ 79 (223)
+.||+||+++ =+|+++|..|.++|.+|++..
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 6799999984 699999999999999999843
No 237
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=77.28 E-value=3.7 Score=39.78 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=30.7
Q ss_pred cCCCCCceEEEecccchHHHH--HHHHHHhcCcEEEec
Q 041887 43 SIPDGTTQVVIRGILTKVAYA--TAFALCQKGIQVVTL 78 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~a--iA~aLC~rgvqV~~~ 78 (223)
.|..|-|-|++||.++.+|.| ||.+| +.|..|+..
T Consensus 36 ~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v 72 (398)
T PRK13656 36 PIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGV 72 (398)
T ss_pred CcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEE
Confidence 455788999999999999999 99999 999987763
No 238
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=77.11 E-value=3.2 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||++.=+|++++..|.++|++|+..
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999873
No 239
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=77.09 E-value=3.3 Score=34.96 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|+++|.+.-+|++++..|.++|.+|..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~ 28 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVA 28 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 3899999999999999999999999987
No 240
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.86 E-value=3.9 Score=38.36 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=30.9
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
-|+.||..|=+||+||+-+.+||-++++ .+++-.+...++
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~ 81 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKE 81 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHH
Confidence 5777999999999999999999998877 444444433333
No 241
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=76.49 E-value=5.2 Score=33.26 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHhcCcEEEe
Q 041887 58 TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~ 77 (223)
+=+|++||.+|+++|.+|++
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~ 25 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVIL 25 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEE
T ss_pred CChHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999
No 242
>PLN02206 UDP-glucuronate decarboxylase
Probab=76.38 E-value=4.2 Score=38.62 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=32.3
Q ss_pred ccCCCC----CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 42 NSIPDG----TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 42 nsIP~g----t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-.+|-| .+.||+||.+-=||+.++.+|.++|++|+..
T Consensus 109 ~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l 149 (442)
T PLN02206 109 GKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVV 149 (442)
T ss_pred CcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence 456766 3579999999999999999999999999974
No 243
>PLN02572 UDP-sulfoquinovose synthase
Probab=76.16 E-value=3.6 Score=38.87 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=28.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||++.=||+.|+.+|.++|++|+..
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 469999999999999999999999999983
No 244
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=75.88 E-value=3.2 Score=36.16 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=23.6
Q ss_pred EEeccc-chHHHHHHHHHHhcCcEEEecc
Q 041887 52 VIRGIL-TKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 52 ~L~G~~-sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|+|+.. -++|+++|.+|+++|.+|+..+
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 566655 5899999999999999999843
No 245
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=75.61 E-value=4 Score=35.96 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=27.3
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.||+||++.=||++++.+|.++|.+|+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~ 29 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHG 29 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999997
No 246
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=75.48 E-value=4.8 Score=30.10 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCc-EEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGI-QVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgv-qV~~ 77 (223)
.++++|+++=+|+++|..|+++|. .|++
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~ 30 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVL 30 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEE
Confidence 589999999999999999999997 5655
No 247
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=75.34 E-value=3.8 Score=38.95 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=27.0
Q ss_pred CceEEEecccc----------------hHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILT----------------KVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~s----------------Kva~aiA~aLC~rgvqV~~~ 78 (223)
-+.|++||..+ |+|++||.+|.++|.+|++.
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~ 231 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLI 231 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEe
Confidence 46788888854 89999999999999999983
No 248
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.23 E-value=8.1 Score=35.69 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.5
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+-|++||.++=+|+++|..|.++|.+|++.
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3579999999999999999999999999984
No 249
>PLN02778 3,5-epimerase/4-reductase
Probab=74.70 E-value=6 Score=34.96 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=30.6
Q ss_pred ccCCC-CCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 42 NSIPD-GTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 42 nsIP~-gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|+-|. .++.||+||++-=+|+.++.+|.++|.+|..
T Consensus 2 ~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 2 NGTAGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 44554 3458999999999999999999999999975
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.27 E-value=6.6 Score=34.88 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=40.7
Q ss_pred ccCCCCCceEEEeccc----chHHHHHHHHHHhcCcEEEe-cchhHHHHHHhhcCCc
Q 041887 42 NSIPDGTTQVVIRGIL----TKVAYATAFALCQKGIQVVT-LREDEHEKLIRSFGGK 93 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~----sKva~aiA~aLC~rgvqV~~-~~~~~y~~lk~~~~~~ 93 (223)
..++ .-+-++|.|.. |=+|-||+..||++|+.|+. +..|-...||......
T Consensus 100 ~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~ 155 (254)
T COG1484 100 EFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEG 155 (254)
T ss_pred HHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcC
Confidence 4566 55678888877 44999999999999999999 6668888888876553
No 251
>PRK08309 short chain dehydrogenase; Provisional
Probab=74.02 E-value=9.5 Score=32.04 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=27.7
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHh
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIR 88 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~ 88 (223)
.|+++|.+ -++.+++..|+++|.+|.+. ++++-+.++.
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 48899997 46677999999999999882 3334444443
No 252
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=73.48 E-value=4.8 Score=35.75 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=26.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcC--cEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKG--IQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rg--vqV~~~ 78 (223)
+.|++||++.-+|++++..|+++| .+|++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~ 36 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY 36 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999999997 688773
No 253
>PRK07578 short chain dehydrogenase; Provisional
Probab=73.25 E-value=5.1 Score=32.23 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+++||+.+-+|+++|..|+++ .+|+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~ 28 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVIT 28 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEE
Confidence 4899999999999999999999 88876
No 254
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.66 E-value=6.1 Score=36.49 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=28.8
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecchhH
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLREDE 82 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~ 82 (223)
.+.|+++|... +|.++|.+|.++|.+|.+.+.++
T Consensus 5 ~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 36799999776 99999999999999999955443
No 255
>PRK05568 flavodoxin; Provisional
Probab=71.47 E-value=3.8 Score=31.87 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=22.7
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+|++.|+|.+|+..|++.|+.|.+
T Consensus 12 ~GnT~~~a~~i~~~~~~~g~~v~~ 35 (142)
T PRK05568 12 TGNTEAMANLIAEGAKENGAEVKL 35 (142)
T ss_pred CchHHHHHHHHHHHHHHCCCeEEE
Confidence 799999999999999999999887
No 256
>PLN00015 protochlorophyllide reductase
Probab=71.44 E-value=7.1 Score=34.24 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=24.8
Q ss_pred EEecccchHHHHHHHHHHhcC-cEEEec
Q 041887 52 VIRGILTKVAYATAFALCQKG-IQVVTL 78 (223)
Q Consensus 52 ~L~G~~sKva~aiA~aLC~rg-vqV~~~ 78 (223)
++||.++=+|+++|..|.++| .+|++.
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~ 28 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMA 28 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999 999883
No 257
>PRK08324 short chain dehydrogenase; Validated
Probab=70.95 E-value=9 Score=38.11 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=28.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+-|++||.++-+|+++|..|.++|.+|++.+
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga~Vvl~~ 453 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGACVVLAD 453 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence 6789999999999999999999999998833
No 258
>PRK06756 flavodoxin; Provisional
Probab=70.62 E-value=3.8 Score=32.43 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=23.1
Q ss_pred ecccchHHHHHHHHHHhcCcEEEec
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+|++.|||++||..|.++|+.|.+.
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~ 36 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVI 36 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEe
Confidence 7999999999999999999998873
No 259
>PLN00016 RNA-binding protein; Provisional
Probab=70.60 E-value=4.3 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCceEEEe----cccchHHHHHHHHHHhcCcEEEecc
Q 041887 46 DGTTQVVIR----GILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 46 ~gt~qV~L~----G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
...+.|++| |++--||+.++.+|.++|++|....
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~ 87 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFT 87 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEe
Confidence 355689999 9999999999999999999999833
No 260
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=70.34 E-value=6.5 Score=35.12 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=27.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.||+||++-=+|+.++.+|.++|.+|+..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~ 45 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGL 45 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 679999999999999999999999999763
No 261
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=70.23 E-value=5.3 Score=37.50 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCceEEEecccchHHHHHHHHHH--hcCcEEEe
Q 041887 46 DGTTQVVIRGILTKVAYATAFALC--QKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~sKva~aiA~aLC--~rgvqV~~ 77 (223)
-|.+||+|+.++||-|+++|..|. +.+++|+=
T Consensus 134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vg 167 (314)
T PF11017_consen 134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVG 167 (314)
T ss_pred CCccEEEEeccchHHHHHHHHHhhccCCCceEEE
Confidence 478999999999999999999999 44677765
No 262
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=69.57 E-value=12 Score=29.73 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=27.8
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+|+|-. +=--.+.|+.+.++|++|++
T Consensus 110 ~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 110 RGIDTVILCGVATDVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp TTESEEEEEEESTTTHHHHHHHHHHHTT-EEEE
T ss_pred cccceEEEcccccCcEEehhHHHHHHCCCEEEE
Confidence 688999999998 55559999999999999998
No 263
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.34 E-value=12 Score=32.17 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.3
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
-+++||+ +=+|+++|..|. +|.+|++.
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~~Vv~~ 30 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGKKVLLA 30 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCCEEEEE
Confidence 4678997 799999999996 89999983
No 264
>PRK09271 flavodoxin; Provisional
Probab=69.12 E-value=4.3 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=23.2
Q ss_pred EecccchHHHHHHHHHHhcCcEEEe
Q 041887 53 IRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 53 L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+|++.|+|.+||..|.++|++|.+
T Consensus 10 ~tGnTe~~A~~ia~~l~~~g~~v~~ 34 (160)
T PRK09271 10 LSGNTREVAREIEERCEEAGHEVDW 34 (160)
T ss_pred CCchHHHHHHHHHHHHHhCCCeeEE
Confidence 3899999999999999999999877
No 265
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=68.80 E-value=5.7 Score=35.14 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=38.5
Q ss_pred cCCceeeeeee-ccCCCCCceEEEecccchHHHHHHHHHHhcC-cEEEecch--hHHHHHHhhc
Q 041887 31 DGSSLAVAVLT-NSIPDGTTQVVIRGILTKVAYATAFALCQKG-IQVVTLRE--DEHEKLIRSF 90 (223)
Q Consensus 31 dGssLaaAvVl-nsIP~gt~qV~L~G~~sKva~aiA~aLC~rg-vqV~~~~~--~~y~~lk~~~ 90 (223)
||....++.-- ..+...-+.|++.|+ --+|++++.+|.++| .+|.+.++ ++-+.+..++
T Consensus 105 D~~G~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 105 DGIGFVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred cHHHHHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 44444444431 123334468999997 799999999999999 57888333 4445555543
No 266
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=68.67 E-value=17 Score=27.01 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=36.8
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhcc
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKA 124 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~A 124 (223)
|++.|- +.+|+.|+..|-+++++|++ .+++..+.+..+. - ..+.||..+++.-.+|
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~---------------~~i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--V---------------EVIYGDATDPEVLERA 58 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--S---------------EEEES-TTSHHHHHHT
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--c---------------ccccccchhhhHHhhc
Confidence 456676 47999999999999988888 4555566655442 1 1466777776655543
No 267
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=68.67 E-value=7.9 Score=35.88 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=35.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cch---hHHHHHHhhcCCc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LRE---DEHEKLIRSFGGK 93 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~---~~y~~lk~~~~~~ 93 (223)
|-|+.||..+-+|++.+.+|-+||++|+. .+. +...+|+...|..
T Consensus 6 Kna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~ 55 (261)
T KOG4169|consen 6 KNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSV 55 (261)
T ss_pred ceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCc
Confidence 57899999999999999999999999988 333 4445555555544
No 268
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=68.45 E-value=9.9 Score=29.89 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 47 GTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 47 gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
|.++|+|+|-. +=--.+.|+.+.++|++|++
T Consensus 109 ~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~v 140 (161)
T cd00431 109 GIDTLVVCGIATDICVLATARDALDLGYRVIV 140 (161)
T ss_pred CCCEEEEEecCcChhHHHHHHHHHHCCCEEEE
Confidence 88999999998 66669999999999999999
No 269
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=66.95 E-value=15 Score=34.97 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=39.5
Q ss_pred CCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcC
Q 041887 45 PDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFG 91 (223)
Q Consensus 45 P~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~ 91 (223)
|-+.+=||+||--|=.|+.+|..|-++|++|.- ..++-=+.|+.+..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~ 74 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK 74 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc
Confidence 346678999999999999999999999999987 55566677887763
No 270
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.60 E-value=20 Score=29.11 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 45 PDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 45 P~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
++| +.|++.|..+ +|.+++..+..+|.+|.. .+.++.+.++.
T Consensus 133 ~~~-~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPG-DTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCC-CEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 444 4689999999 999999988889999887 34455555543
No 271
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=66.40 E-value=13 Score=34.21 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=33.6
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcC
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFG 91 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~ 91 (223)
-|++||..|-+|+++|..+.+-|-+|++ -++++.+..+.+.|
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p 50 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP 50 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCc
Confidence 5899999999999999999999999998 34455555555444
No 272
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=66.32 E-value=9.9 Score=35.42 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=34.6
Q ss_pred EEEeccc-chHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhc
Q 041887 51 VVIRGIL-TKVAYATAFALCQKGIQVVT--LREDEHEKLIRSF 90 (223)
Q Consensus 51 V~L~G~~-sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~ 90 (223)
|++.|+. +=+.|.+|+-|=|||+-|.+ .+.++++.++.+-
T Consensus 6 VvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~ 48 (299)
T PF08643_consen 6 VVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED 48 (299)
T ss_pred EEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc
Confidence 5568986 99999999999999999988 7778898888874
No 273
>PRK09620 hypothetical protein; Provisional
Probab=66.09 E-value=9.4 Score=33.59 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHhcCcEEEe
Q 041887 58 TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~ 77 (223)
-++|++||.+|.++|.+|++
T Consensus 29 GfiGs~LA~~L~~~Ga~V~l 48 (229)
T PRK09620 29 GTIGRIIAEELISKGAHVIY 48 (229)
T ss_pred CHHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999986
No 274
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=65.88 E-value=7.3 Score=34.20 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=24.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.||+||.+.=||+.++.+|.++|.+++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~ 29 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVV 29 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEE
Confidence 5899999999999999999999976443
No 275
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=65.79 E-value=6 Score=34.92 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=27.1
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|+++|++.=||++++.+|.++|+.|+..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 58999999999999999999999999884
No 276
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=65.64 E-value=17 Score=30.07 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred ccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 42 NSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
-.+++| +.|+++|..+=+|.+++..+..+|++|++ .+++..+.++
T Consensus 140 ~~~~~g-~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 186 (325)
T cd08253 140 AGAKAG-ETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR 186 (325)
T ss_pred hCCCCC-CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 345555 67889998888999999999999999988 3445555553
No 277
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=64.84 E-value=18 Score=28.72 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcE-EEecch--hHHHHHHhhc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQ-VVTLRE--DEHEKLIRSF 90 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvq-V~~~~~--~~y~~lk~~~ 90 (223)
..+.|++-|+ -..||+++.+|.++|++ |.+.++ ++-+.|.+++
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 3568999997 68999999999999999 666333 5556666665
No 278
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=64.15 E-value=11 Score=29.35 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCceEEEecccchHHHHHHHHHHhcC-cEEEec--chhHHHHHHhh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKG-IQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rg-vqV~~~--~~~~y~~lk~~ 89 (223)
..+.|++.|. ..+|+++|.+|.+.| .+|.+. +.++-+.+.++
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 3468999997 789999999999996 677773 23344444433
No 279
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=63.63 E-value=7.2 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=26.5
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecchhH
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLREDE 82 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~ 82 (223)
.||+.|.|+= |+.+|..|+++|++|+.+-..+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~ 33 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTS 33 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccC
Confidence 5899999965 9999999999999999833333
No 280
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=63.34 E-value=6.6 Score=29.87 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.6
Q ss_pred ecccchHHHHHHHHHHhcCcEEEecc
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+|++.|+|.+|+..|.+.|+.|.+.+
T Consensus 9 tGnT~~~A~~i~~~~~~~g~~v~~~~ 34 (140)
T TIGR01753 9 TGNTEEMANIIAEGLKEAGAEVDLLE 34 (140)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 89999999999999999999998833
No 281
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=63.09 E-value=25 Score=30.04 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=35.2
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
.+.+| +.|++.|..+-+|.+++..+.++|++|++ .+.++.+.+++
T Consensus 142 ~~~~~-~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 142 KPKPG-ETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVE 188 (329)
T ss_pred CCCCC-CEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 34444 68899999999999999999999999987 34556666665
No 282
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=62.57 E-value=8.7 Score=33.70 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=31.3
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecch--hHHHHHHhh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLRE--DEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~--~~y~~lk~~ 89 (223)
..+.|++.|. .-+|+++|.+|.+.|.+|.+.++ ++-+.+.++
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3468999998 58999999999999999888433 333444443
No 283
>PRK05569 flavodoxin; Provisional
Probab=62.13 E-value=7.1 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=23.0
Q ss_pred ecccchHHHHHHHHHHhcCcEEEec
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+|+|.|||.+||..|.+.|+.|.+.
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~ 36 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIK 36 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 8999999999999999999998873
No 284
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=62.10 E-value=7.8 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCcEEEecchhHHHHHHhh
Q 041887 61 AYATAFALCQKGIQVVTLREDEHEKLIRS 89 (223)
Q Consensus 61 a~aiA~aLC~rgvqV~~~~~~~y~~lk~~ 89 (223)
.-+||.+|.+||.+|.+...++|+..-.+
T Consensus 15 ~lala~~L~~rGh~V~~~~~~~~~~~v~~ 43 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPPDFRERVEA 43 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETGGGHHHHHH
T ss_pred HHHHHHHHhccCCeEEEeecccceecccc
Confidence 45899999999999988555666654433
No 285
>PRK07308 flavodoxin; Validated
Probab=61.75 E-value=6.6 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=22.4
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+|++-|+|++||..|.++|+.|.+
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~ 35 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDV 35 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEE
Confidence 799999999999999999998877
No 286
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=61.42 E-value=11 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=28.9
Q ss_pred eeccC--CCCCceEEEecccch--HHHHHHHHHHhcCcEEEe
Q 041887 40 LTNSI--PDGTTQVVIRGILTK--VAYATAFALCQKGIQVVT 77 (223)
Q Consensus 40 VlnsI--P~gt~qV~L~G~~sK--va~aiA~aLC~rgvqV~~ 77 (223)
+...+ +++-+=++|+|.-+. -|.++|+.|+++|++|.+
T Consensus 16 i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 16 IRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 44555 677777888888744 788999999999999988
No 287
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=61.21 E-value=14 Score=32.87 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=40.6
Q ss_pred EEecccchHHHHHHHHHHhcC--cEEEecchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhccCCCce
Q 041887 52 VIRGILTKVAYATAFALCQKG--IQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAERGTM 129 (223)
Q Consensus 52 ~L~G~~sKva~aiA~aLC~rg--vqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ApkGt~ 129 (223)
++||.+-=||+.|+..|.++| .+|.+...... .. .+.....+..+.++.||-.++++=..|=+|..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~--------~~----~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d 68 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPP--------PK----FLKDLQKSGVKEYIQGDITDPESLEEALEGVD 68 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccc--------cc----cchhhhcccceeEEEeccccHHHHHHHhcCCc
Confidence 479999999999999999999 67766321111 11 00001111223499999666655556666653
No 288
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=61.19 E-value=10 Score=33.23 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=24.6
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.||+||.+--||++++.+|.++| +|+.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~ 28 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIA 28 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEE
Confidence 59999999999999999999999 6664
No 289
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.83 E-value=18 Score=33.13 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=30.6
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHh
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIR 88 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~ 88 (223)
.|++.|. ..+|+++|..|.++|++|++. +.+..+.++.
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 5788887 899999999999999999984 3455665544
No 290
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=59.39 E-value=23 Score=29.86 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=60.9
Q ss_pred ceeeeeeeccCCC--CCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCcccccceeeeccceeeEEE
Q 041887 34 SLAVAVLTNSIPD--GTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWL 111 (223)
Q Consensus 34 sLaaAvVlnsIP~--gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~Wl 111 (223)
+.|+.-.+.+++. .-+.|++.|.-.=+|..+|.+|.++|++|.+.++ .++.+.+.+... +-++..+. .++ +
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r-~~~~l~~~l~~a---DiVIsat~-~~~--i 100 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS-KTKNLKEHTKQA---DIVIVAVG-KPG--L 100 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC-CchhHHHHHhhC---CEEEEcCC-CCc--e
Confidence 3344445666663 6689999999544799999999999999888332 344555444433 22223321 123 2
Q ss_pred ecCCCCHHHhhccCCCceeeeccccCCC-----ccCCCCccc
Q 041887 112 VGNGLTEEEQSKAERGTMFVPFSQFPPA-----KKRRKDCTY 148 (223)
Q Consensus 112 VGd~l~~~eQ~~ApkGt~FipfsQfPp~-----~~~RkDC~Y 148 (223)
+ +. | +.++|+.||-.+ +|+. .++..|+-|
T Consensus 101 i----~~-~--~~~~~~viIDla-~prdvd~~~~~~~G~~d~ 134 (168)
T cd01080 101 V----KG-D--MVKPGAVVIDVG-INRVPDKSGGKLVGDVDF 134 (168)
T ss_pred e----cH-H--HccCCeEEEEcc-CCCcccccCCCeeCCcCH
Confidence 3 22 1 245689999999 8884 244455543
No 291
>PLN02427 UDP-apiose/xylose synthase
Probab=59.18 E-value=16 Score=32.93 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred ccCCCCCceEEEecccchHHHHHHHHHHhc-CcEEEec
Q 041887 42 NSIPDGTTQVVIRGILTKVAYATAFALCQK-GIQVVTL 78 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~sKva~aiA~aLC~r-gvqV~~~ 78 (223)
+--|--.+.||+||.+-=||+.++..|.++ |.+|+..
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 334545568999999999999999999999 5898874
No 292
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=58.46 E-value=14 Score=35.03 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+.+.|+.||++.=||..|+..|-+||+.|.-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~g 35 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRG 35 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 7789999999999999999999999999987
No 293
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=57.61 E-value=23 Score=34.78 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=32.3
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEecch--hHHHHHHhhc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTLRE--DEHEKLIRSF 90 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~--~~y~~lk~~~ 90 (223)
.+.|+++|+ .-+|+|||.+|.++|++|.+.++ ++-+.|..++
T Consensus 379 ~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 379 GKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV 422 (529)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 368999999 59999999999999999888443 4445554443
No 294
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=57.35 E-value=13 Score=31.95 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
||+||++-=||+.++..|.++|++|+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~ 28 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDIL 28 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEE
Confidence 789999999999999999999986544
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=57.32 E-value=22 Score=32.49 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=33.3
Q ss_pred CceEEEeccc----chHHHHHHHHHHhcCcEEEecc-hhHHHHHHhhc
Q 041887 48 TTQVVIRGIL----TKVAYATAFALCQKGIQVVTLR-EDEHEKLIRSF 90 (223)
Q Consensus 48 t~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~-~~~y~~lk~~~ 90 (223)
.+-++|.|.+ |=++.|||..||++|+.|...+ .+-...|+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~ 203 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI 203 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHH
Confidence 4579999988 4499999999999999998733 34456666654
No 296
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=57.31 E-value=41 Score=28.62 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.-+.|.+.|-- ++|+++|..|.+.|.+|++
T Consensus 27 ~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 27 EGKTVAVQGLG-KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEE
Confidence 33678999885 8999999999999999998
No 297
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=56.85 E-value=8.1 Score=30.51 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.5
Q ss_pred ecccchHHHHHHHHHHhcCcEEE
Q 041887 54 RGILTKVAYATAFALCQKGIQVV 76 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~ 76 (223)
+|++.|+|++||..|..+|+.|.
T Consensus 11 tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 11 SGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred CChHHHHHHHHHHHHhhCCeeEE
Confidence 79999999999999999999886
No 298
>PRK06849 hypothetical protein; Provisional
Probab=56.74 E-value=15 Score=33.52 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=27.7
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.+.|+++|...=+|..+|.+|.+.|++|++.
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~ 34 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILA 34 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4679999999767899999999999999993
No 299
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=55.54 E-value=30 Score=33.07 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=51.0
Q ss_pred HHHHHHHhcCcEEEe----cchhHHHHHHhh-cCCcccccceeeeccceeeE-EEecCCCCHHHhhccCCCceeeecccc
Q 041887 63 ATAFALCQKGIQVVT----LREDEHEKLIRS-FGGKSESKNLLVSRSYCQKI-WLVGNGLTEEEQSKAERGTMFVPFSQF 136 (223)
Q Consensus 63 aiA~aLC~rgvqV~~----~~~~~y~~lk~~-~~~~~~~~~L~~~~~~~~K~-WlVGd~l~~~eQ~~ApkGt~FipfsQf 136 (223)
.+-.++.+|||+|++ .+....-..-++ +.+. .+..|+ ||-||.+.++-....++|..|.+...-
T Consensus 62 ~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~----------Gl~lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~ 131 (362)
T PF07287_consen 62 PLLPAAAEKGIKVITNAGGLNPAGCADIVREIAREL----------GLSLKVAVVYGDDLKDEVKELLAEGETIRPLDTG 131 (362)
T ss_pred HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhc----------CCCeeEEEEECccchHhHHHHHhCCCCCccCCCC
Confidence 344556688999999 444444443344 3333 335689 999999999988888899988888866
Q ss_pred CCCccCCCCcc
Q 041887 137 PPAKKRRKDCT 147 (223)
Q Consensus 137 Pp~~~~RkDC~ 147 (223)
||..+.+.+|+
T Consensus 132 ~~l~~~~~~~~ 142 (362)
T PF07287_consen 132 PPLSEWDDRIV 142 (362)
T ss_pred CCcchhccccc
Confidence 66555554443
No 300
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=54.95 E-value=21 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 47 GTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 47 gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
|.++|+|+|-. +=--...|+.+.++|++|++
T Consensus 113 gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~v 144 (179)
T cd01015 113 GVDTLIVAGCSTSGCIRATAVDAMQHGFRPIV 144 (179)
T ss_pred CCCEEEEeeecccHhHHHHHHHHHHCCCeEEE
Confidence 67899999988 66668889999999999999
No 301
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=54.79 E-value=15 Score=33.45 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=30.4
Q ss_pred ceEEEeccc----chHHHHHHHHHHhcCcEEEecchhHHHHHHhh
Q 041887 49 TQVVIRGIL----TKVAYATAFALCQKGIQVVTLREDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~ 89 (223)
+=+|++|+- |=+|-|+|.+|.++|.+|++.|.|--++|-.-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHH
Confidence 446777765 45999999999999999999777665555443
No 302
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=54.67 E-value=28 Score=30.04 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcC-cEEEe--cchhHHHHHHh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKG-IQVVT--LREDEHEKLIR 88 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rg-vqV~~--~~~~~y~~lk~ 88 (223)
.+.|++.|..+ +|.+++..+..+| ++|++ .++++.+.+++
T Consensus 168 ~~~vlI~g~~~-vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~ 210 (340)
T cd05284 168 GSTVVVIGVGG-LGHIAVQILRALTPATVIAVDRSEEALKLAER 210 (340)
T ss_pred CCEEEEEcCcH-HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 35788999667 9999999999998 89876 45677777743
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.58 E-value=21 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 60 VAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 60 va~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
.|.|+|..|.++|.+|.+ .+++..+.|+..
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 588999999999999999 555677778775
No 304
>PRK06703 flavodoxin; Provisional
Probab=54.15 E-value=10 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=23.3
Q ss_pred ecccchHHHHHHHHHHhcCcEEEecc
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+|++.++|++||..|-..|++|.+.+
T Consensus 12 tGnT~~iA~~ia~~l~~~g~~v~~~~ 37 (151)
T PRK06703 12 SGNTEDIADLIKVSLDAFDHEVVLQE 37 (151)
T ss_pred CchHHHHHHHHHHHHHhcCCceEEEe
Confidence 79999999999999999999998733
No 305
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=54.13 E-value=8.1 Score=36.02 Aligned_cols=36 Identities=36% Similarity=1.059 Sum_probs=24.8
Q ss_pred CCcccCCccccc---------chhhhcccccccchheeeccceeeccCCCcccccC
Q 041887 151 TPAMATPAALEN---------VDSCENWLPRRVMSAWRIGGIVHALEGWNEHECGY 197 (223)
Q Consensus 151 tPAM~~P~~~~n---------~~sCEnwlpRrvmsA~r~aGivHaLEgW~~hEcG~ 197 (223)
.|-|.+|.||-. +.+=-+||-|.|+.+ .||| ||||.
T Consensus 10 ~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~----------~GWD-HD~G~ 54 (273)
T PF11886_consen 10 MPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDP----------HGWD-HDCGF 54 (273)
T ss_pred CCcccCCCCcCCCCCceeeEeecCccceeEeecccC----------CCcc-cccCc
Confidence 466666666642 334458999998876 5786 79995
No 306
>PLN03194 putative disease resistance protein; Provisional
Probab=54.06 E-value=18 Score=31.88 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=53.2
Q ss_pred ceEEE--eccc--chHHHHHHHHHHhcCcEEEecchhHH-------HHHHhhcCCccccccee-eeccceeeEEEecCCC
Q 041887 49 TQVVI--RGIL--TKVAYATAFALCQKGIQVVTLREDEH-------EKLIRSFGGKSESKNLL-VSRSYCQKIWLVGNGL 116 (223)
Q Consensus 49 ~qV~L--~G~~--sKva~aiA~aLC~rgvqV~~~~~~~y-------~~lk~~~~~~~~~~~L~-~~~~~~~K~WlVGd~l 116 (223)
-+||| +|.- ...+.-+..+|+++||+|-+ ..++. ..|.+.+ .+ ++--++ +|+.|....|-.-+..
T Consensus 27 yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~-D~~el~~G~~i~~~L~~AI-ee-Sri~IvVfS~~Ya~S~WCLdEL~ 103 (187)
T PLN03194 27 CDVFINHRGIDTKRTIATLLYDHLSRLNLRPFL-DNKNMKPGDKLFDKINSAI-RN-CKVGVAVFSPRYCESYFCLHELA 103 (187)
T ss_pred CcEEEeCCCccccccHHHHHHHHHHHCCCEEEE-cCccccCCCcHHHHHHHHH-Hh-CeEEEEEECCCcccchhHHHHHH
Confidence 48999 6764 46889999999999999999 33211 2333332 33 445555 8888987778664444
Q ss_pred CHHHhhccCCCceeee-ccccCCCccCC
Q 041887 117 TEEEQSKAERGTMFVP-FSQFPPAKKRR 143 (223)
Q Consensus 117 ~~~eQ~~ApkGt~Fip-fsQfPp~~~~R 143 (223)
.-.|.. ...+| |-.++| ..+|
T Consensus 104 ~I~e~~-----~~ViPIFY~VdP-sdVr 125 (187)
T PLN03194 104 LIMESK-----KRVIPIFCDVKP-SQLR 125 (187)
T ss_pred HHHHcC-----CEEEEEEecCCH-HHhh
Confidence 443322 23444 444666 4455
No 307
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=53.55 E-value=45 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCCC-CceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 44 IPDG-TTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 44 IP~g-t~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
+|.+ .+.|++.|- .++|+.+|..|.++|+.|++ .++++.+.++
T Consensus 412 ~~~~~~~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~ 457 (558)
T PRK10669 412 IPVDICNHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELR 457 (558)
T ss_pred cccccCCCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4444 368888886 58999999999999999998 3444455444
No 308
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.48 E-value=18 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
+.|+++|... .|+++|.+|.++|.+|+...
T Consensus 6 k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 6 KKVLVLGLAK-SGYAAAKLLHKLGANVTVND 35 (447)
T ss_pred CEEEEEeeCH-HHHHHHHHHHHCCCEEEEEc
Confidence 5789999975 99999999999999999943
No 309
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.24 E-value=6.1 Score=35.33 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=59.1
Q ss_pred cccccccccccceeeEe----ecCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhc-CcEEEe-
Q 041887 4 INYQGEELNRYGGLFVH----KNPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQK-GIQVVT- 77 (223)
Q Consensus 4 ~LNq~e~LN~~Gelyv~----k~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~r-gvqV~~- 77 (223)
++|+++-.-.+|...+. +...++..-|.|+.|.-.+.-....+| ..|||-|+...|+..++..|.++ |++++-
T Consensus 58 ~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~-~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~ 136 (243)
T PRK03692 58 LINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEG-TPVFLVGGKPEVLAQTEAKLRTQWNVNIVGS 136 (243)
T ss_pred HHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 45555555556653331 223334556779999887554445556 78999999999999999999888 888874
Q ss_pred ----cchhHHHHHHhhcCCc
Q 041887 78 ----LREDEHEKLIRSFGGK 93 (223)
Q Consensus 78 ----~~~~~y~~lk~~~~~~ 93 (223)
.+.++.+.+.+++...
T Consensus 137 ~~Gyf~~~e~~~i~~~I~~s 156 (243)
T PRK03692 137 QDGYFTPEQRQALFERIHAS 156 (243)
T ss_pred eCCCCCHHHHHHHHHHHHhc
Confidence 3345556666665443
No 310
>PRK09004 FMN-binding protein MioC; Provisional
Probab=51.94 E-value=11 Score=30.58 Aligned_cols=27 Identities=30% Similarity=0.126 Sum_probs=23.7
Q ss_pred ecccchHHHHHHHHHHhcCcEEEecch
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
||++-.+|..||..|.++|++|.+.+.
T Consensus 12 tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 12 LGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred chHHHHHHHHHHHHHHHcCCceEEecc
Confidence 788899999999999999999987443
No 311
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=51.27 E-value=22 Score=31.81 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=24.8
Q ss_pred CceEEEeccc---ch--HHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGIL---TK--VAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~---sK--va~aiA~aLC~rgvqV~~ 77 (223)
.+.+|+||-- -| +++++|.|||++|++|..
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~ 36 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAG 36 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEE
Confidence 4678899865 34 778999999999999988
No 312
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=51.12 E-value=49 Score=34.99 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=59.9
Q ss_pred eccCCCCCceEEEeccc-chHHHHHHHHHHhcCcEEEe----cch---hHHHHHHhh-cCCccccccee-eec-ccee--
Q 041887 41 TNSIPDGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT----LRE---DEHEKLIRS-FGGKSESKNLL-VSR-SYCQ-- 107 (223)
Q Consensus 41 lnsIP~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~----~~~---~~y~~lk~~-~~~~~~~~~L~-~~~-~~~~-- 107 (223)
-|.++-+.+=++.||+. .-+|-+|+.-|-+-|-+|+. +++ +-|.+|-.. +... ..=-+| ... ||+-
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~g-a~LwvVpaN~~SysDVd 467 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYG-AALWVVPANMGSYSDVD 467 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCC-ceEEEEeccccchhhHH
Confidence 57788888889999999 77999999999999999998 333 445556555 4444 222222 222 6632
Q ss_pred -eE-EEecCCCC-HHHh----hccCCCceeeeccccCCC
Q 041887 108 -KI-WLVGNGLT-EEEQ----SKAERGTMFVPFSQFPPA 139 (223)
Q Consensus 108 -K~-WlVGd~l~-~~eQ----~~ApkGt~FipfsQfPp~ 139 (223)
=| ||--+.-+ ---| +-|--=|+.+||- -||.
T Consensus 468 AlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFA-Ap~v 505 (866)
T COG4982 468 ALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFA-APRV 505 (866)
T ss_pred HHHHHhccccccccCCcceecccccCcceeeecc-cCCc
Confidence 23 66311100 0002 3355558889997 6653
No 313
>PRK12377 putative replication protein; Provisional
Probab=51.03 E-value=28 Score=31.06 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCceEEEeccc--ch--HHHHHHHHHHhcCcEEEec-chhHHHHHHhhc
Q 041887 46 DGTTQVVIRGIL--TK--VAYATAFALCQKGIQVVTL-REDEHEKLIRSF 90 (223)
Q Consensus 46 ~gt~qV~L~G~~--sK--va~aiA~aLC~rgvqV~~~-~~~~y~~lk~~~ 90 (223)
.+..-++|.|.. -| ++.|||.+|+++|+.|+.. -.+-.+.|+...
T Consensus 99 ~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 99 TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY 148 (248)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH
Confidence 344568999977 44 9999999999999999873 345556666553
No 314
>PRK08105 flavodoxin; Provisional
Probab=50.90 E-value=10 Score=30.89 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=25.4
Q ss_pred ecccchHHHHHHHHHHhcCcEEEecchhHH
Q 041887 54 RGILTKVAYATAFALCQKGIQVVTLREDEH 83 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~~~~~~y 83 (223)
||++-.+|..|+..|.++|++|.+.+-+++
T Consensus 12 tGnte~~A~~l~~~l~~~g~~~~~~~~~~~ 41 (149)
T PRK08105 12 YGNALLVAEEAEAILTAQGHEVTLFEDPEL 41 (149)
T ss_pred chHHHHHHHHHHHHHHhCCCceEEechhhC
Confidence 788899999999999999999998554443
No 315
>PRK06835 DNA replication protein DnaC; Validated
Probab=49.47 E-value=33 Score=31.92 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCceEEEeccc--ch--HHHHHHHHHHhcCcEEEecc-hhHHHHHHhh
Q 041887 47 GTTQVVIRGIL--TK--VAYATAFALCQKGIQVVTLR-EDEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~--sK--va~aiA~aLC~rgvqV~~~~-~~~y~~lk~~ 89 (223)
..+-++|.|.+ -| ++.|||.+|+++|.+|+..+ .+-++.|+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~ 229 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREI 229 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHH
Confidence 34679998877 34 99999999999999998844 4555666653
No 316
>PRK08181 transposase; Validated
Probab=49.22 E-value=29 Score=31.36 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCceEEEeccc----chHHHHHHHHHHhcCcEEEe-cchhHHHHHHhh
Q 041887 47 GTTQVVIRGIL----TKVAYATAFALCQKGIQVVT-LREDEHEKLIRS 89 (223)
Q Consensus 47 gt~qV~L~G~~----sKva~aiA~aLC~rgvqV~~-~~~~~y~~lk~~ 89 (223)
...-|+|.|.. |=++.||+.++|++|.+|.. ...+-.+.|+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a 152 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA 152 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH
Confidence 33569999988 44999999999999999987 334555555443
No 317
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=49.07 E-value=53 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=27.4
Q ss_pred EecccchHHHHHHHHHHhcCcEEEe-cchhHHHHHHhh
Q 041887 53 IRGILTKVAYATAFALCQKGIQVVT-LREDEHEKLIRS 89 (223)
Q Consensus 53 L~G~~sKva~aiA~aLC~rgvqV~~-~~~~~y~~lk~~ 89 (223)
+-|.-. +|..+|..|.+.|.+|.+ .+.+.++.++++
T Consensus 3 I~G~Ga-iG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 3 IIGAGA-IGSLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp EESTSH-HHHHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred EECcCH-HHHHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 344443 899999999999999999 333468888776
No 318
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=48.64 E-value=31 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=29.1
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+++|-. +=--.+.|+...++|++|++
T Consensus 149 ~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~v 181 (226)
T TIGR03614 149 RGIRNLVFTGIATNVCVESTLRDGFHLEYFGVV 181 (226)
T ss_pred CCCCEEEEeccCccHhHHHHHHHHHHCCCEEEE
Confidence 478899999998 77779999999999999999
No 319
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=48.60 E-value=65 Score=26.56 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHH
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKL 86 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~l 86 (223)
+++| +.|+++|..+=+|++++..+..+|++|++ .+.+..+.+
T Consensus 137 ~~~~-~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd05276 137 LKAG-ETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC 180 (323)
T ss_pred CCCC-CEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 4444 58899999888999999999999999888 333555555
No 320
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=48.56 E-value=29 Score=32.41 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=37.1
Q ss_pred eccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHH
Q 041887 41 TNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHE 84 (223)
Q Consensus 41 lnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~ 84 (223)
++.+++..+.|.+-|.+-.+|..+|.+|.++|+.|.+.+.+.+.
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~ 134 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD 134 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch
Confidence 46778888899999988999999999999999999995544443
No 321
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=48.22 E-value=8.6 Score=32.28 Aligned_cols=18 Identities=44% Similarity=0.202 Sum_probs=16.4
Q ss_pred EecccchHHHHHHHHHHh
Q 041887 53 IRGILTKVAYATAFALCQ 70 (223)
Q Consensus 53 L~G~~sKva~aiA~aLC~ 70 (223)
.||||-|||+||+.+|-.
T Consensus 7 ~TGNTkkvA~aI~~~l~~ 24 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEALGA 24 (160)
T ss_pred CCChHHHHHHHHHHHCCC
Confidence 389999999999999976
No 322
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=47.99 E-value=24 Score=33.96 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=33.9
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe---cchhHHHHHHhh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT---LREDEHEKLIRS 89 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~---~~~~~y~~lk~~ 89 (223)
.+.|+.||..-=+|..++++|-++|+.|+. ++....++|++-
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~ 46 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRV 46 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHH
Confidence 467999999999999999999999999999 344445555543
No 323
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.44 E-value=51 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.2
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.|+-.-+.|.+.|...=||++||..|.++|..|++.+
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~ 190 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICH 190 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEe
Confidence 3555567899999988899999999999999998833
No 324
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=47.28 E-value=53 Score=27.81 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHH
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKL 86 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~l 86 (223)
..|++.|..+-+|++++..+..+|++|.+ .+.++.+.+
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~ 203 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL 203 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 46888999999999999999999999987 334554544
No 325
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=47.26 E-value=21 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.3
Q ss_pred EEEecccchHHHHHHHHHHhcCc-EEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGI-QVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgv-qV~~ 77 (223)
||+||.+.=||+.++..|.++|. .|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~ 28 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILV 28 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEE
Confidence 68999998899999999999997 5766
No 326
>PRK12320 hypothetical protein; Provisional
Probab=46.24 E-value=26 Score=36.16 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=27.6
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.|++||++..+|+.++..|.++|++|+..+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ld 31 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIA 31 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEe
Confidence 589999999999999999999999998843
No 327
>PRK11440 putative hydrolase; Provisional
Probab=46.20 E-value=37 Score=28.04 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.7
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++++++|-. +=--.+.|+.+.++|++|++
T Consensus 119 ~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~v 151 (188)
T PRK11440 119 RGIDTIVLCGISTNIGVESTARNAWELGFNLVI 151 (188)
T ss_pred CCCCEEEEeeechhHHHHHHHHHHHHCCCEEEE
Confidence 388999999999 66668999999999999999
No 328
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=46.10 E-value=28 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.9
Q ss_pred EEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 51 VVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 51 V~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
|++.|+. +-...-.|.+|.++|++|.+
T Consensus 2 Il~i~~~~~~~~~~~~~~L~~~g~~V~i 29 (139)
T PF13477_consen 2 ILLIGNTPSTFIYNLAKELKKRGYDVHI 29 (139)
T ss_pred EEEEecCcHHHHHHHHHHHHHCCCEEEE
Confidence 5667776 66788899999999999999
No 329
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=45.98 E-value=17 Score=32.02 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=22.6
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|++-|+|+-||.-|-++|+||-+
T Consensus 11 ~GqT~kIA~~iA~~L~e~g~qvdi 34 (175)
T COG4635 11 DGQTRKIAEYIASHLRESGIQVDI 34 (175)
T ss_pred CCcHHHHHHHHHHHhhhcCCeeee
Confidence 588899999999999999999998
No 330
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=45.80 E-value=71 Score=27.23 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.+.|++.|...=+|.+++..+..+|++|++ .++++.+.+++
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 189 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK 189 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH
Confidence 3468999999877999999999999999987 45677777744
No 331
>PRK07952 DNA replication protein DnaC; Validated
Probab=45.74 E-value=47 Score=29.65 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=35.3
Q ss_pred ccCCCCCceEEEeccc--ch--HHHHHHHHHHhcCcEEEecc-hhHHHHHHhhc
Q 041887 42 NSIPDGTTQVVIRGIL--TK--VAYATAFALCQKGIQVVTLR-EDEHEKLIRSF 90 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~--sK--va~aiA~aLC~rgvqV~~~~-~~~y~~lk~~~ 90 (223)
++...+..-++|.|.. -| ++.|||.+|+++|..|+..+ .+-.+.|+...
T Consensus 93 ~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~ 146 (244)
T PRK07952 93 EEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF 146 (244)
T ss_pred HhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHH
Confidence 4444455578999987 44 99999999999999998843 34455565543
No 332
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=45.38 E-value=40 Score=27.08 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.4
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++++++|-. +=--.+.|+.+.++|++|++
T Consensus 86 ~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 86 TGRKQVVLAGLETHVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred cCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEE
Confidence 488999999999 55568999999999999999
No 333
>PRK08116 hypothetical protein; Validated
Probab=45.36 E-value=43 Score=29.84 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=31.7
Q ss_pred eEEEeccc----chHHHHHHHHHHhcCcEEEecch-hHHHHHHhhcC
Q 041887 50 QVVIRGIL----TKVAYATAFALCQKGIQVVTLRE-DEHEKLIRSFG 91 (223)
Q Consensus 50 qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~-~~y~~lk~~~~ 91 (223)
=++|.|.. |=+|.|||.+|+++|+.|+..+- +-...++....
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~ 162 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYK 162 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 38999987 44999999999999999988443 44556665543
No 334
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=45.11 E-value=29 Score=29.78 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHhcCcEEEe
Q 041887 58 TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~ 77 (223)
-|.|++||.++.+||..|++
T Consensus 29 G~~G~~lA~~~~~~Ga~V~l 48 (185)
T PF04127_consen 29 GKMGAALAEEAARRGAEVTL 48 (185)
T ss_dssp SHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHCCCEEEE
Confidence 69999999999999999998
No 335
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=44.98 E-value=83 Score=25.47 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=34.1
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
.+++| +.|++.|..+-+|.+++..+..+|++|+. .+.++.+.++
T Consensus 101 ~~~~g-~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 146 (288)
T smart00829 101 RLRPG-ESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLR 146 (288)
T ss_pred CCCCC-CEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34555 47889998889999999999999999887 3556666664
No 336
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=44.93 E-value=37 Score=33.68 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=35.7
Q ss_pred ceeeeeeeccCCC----CCceEEEecccchHHHHHHHHHHhc-CcEEEecc
Q 041887 34 SLAVAVLTNSIPD----GTTQVVIRGILTKVAYATAFALCQK-GIQVVTLR 79 (223)
Q Consensus 34 sLaaAvVlnsIP~----gt~qV~L~G~~sKva~aiA~aLC~r-gvqV~~~~ 79 (223)
.|.+-.++++-|. -.+.||+||++-=+|+.++.+|.++ |++|+..+
T Consensus 297 ~~~~g~~~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 297 GLVAGARLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CCCCCCEecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 3444445666663 4568999999999999999999986 79999743
No 337
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.80 E-value=63 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=33.5
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
.+++| +.|++.|...=+|.+++..+..+|++|.+ .+.++.+.++
T Consensus 133 ~~~~g-~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 178 (320)
T cd05286 133 PVKPG-DTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR 178 (320)
T ss_pred CCCCC-CEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 45555 56889998878999999988889999988 3445666664
No 338
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.65 E-value=27 Score=32.65 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.7
Q ss_pred CCceEEEeccc-chHHHHHHHHHHhcCcEEEecc
Q 041887 47 GTTQVVIRGIL-TKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 47 gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.-+.|++||-. --+|+|+|+-+.|.|++|.-++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATA 39 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEc
Confidence 45688999988 7799999999999999999843
No 339
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=44.62 E-value=33 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.0
Q ss_pred EEEecccchHHHHHHHHHHhcCc-EEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGI-QVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgv-qV~~ 77 (223)
++++|.+..+|..+|.+|.++|. +|++
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il 30 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLIL 30 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEE
Confidence 68899999999999999999975 5555
No 340
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=44.44 E-value=79 Score=26.77 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
+...|++.|...=+|.+++..+..+|++|++ .+.++.+.++
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 188 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK 188 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4457999999988999999988888999877 3445555553
No 341
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=44.29 E-value=19 Score=32.67 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=23.0
Q ss_pred ceEEEecccchHHHHHHHHHHhcCc-EEEecc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGI-QVVTLR 79 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgv-qV~~~~ 79 (223)
+.|++-|+=- .||||+.+|+.+|+ +|.+.+
T Consensus 125 k~vlvlGaGG-aarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 125 KTMVLLGAGG-ASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CEEEEECCcH-HHHHHHHHHHHCCCCEEEEEe
Confidence 6788888762 28999999999998 566633
No 342
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.25 E-value=55 Score=27.15 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=50.5
Q ss_pred EEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhc--CcEEEe-----cchhHHHHHHhhcCCc
Q 041887 28 KVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQK--GIQVVT-----LREDEHEKLIRSFGGK 93 (223)
Q Consensus 28 rvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~r--gvqV~~-----~~~~~y~~lk~~~~~~ 93 (223)
.-|+|+.|.-++.- ...+.-..|||-|....++..++..|.++ |++|+- .++++.+.+...+...
T Consensus 29 ~rv~g~dl~~~l~~-~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 29 ERVTGSDLFPDLLR-RAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS 100 (172)
T ss_pred cccCHHHHHHHHHH-HHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc
Confidence 56788888776554 44455569999999999999999999999 999986 3456777777775554
No 343
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=43.96 E-value=39 Score=30.40 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=42.6
Q ss_pred cccceeeEeecCCceEEEecCCceeee---eeeccCC-CCCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 12 NRYGGLFVHKNPELKIKVVDGSSLAVA---VLTNSIP-DGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 12 N~~Gelyv~k~P~LkvrvVdGssLaaA---vVlnsIP-~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
++.+-||++.- ++++ +|++|... -...+|| .+++.|++.|..+ |..+....|.++||.|+..+
T Consensus 9 ~r~~~~y~~~~---~L~~-~~~~l~v~~~~~~~~~IP~~~i~~Ivl~g~~s-iT~~al~~l~~~gI~v~~~~ 75 (269)
T TIGR03638 9 DRISFLYLERG---RLDV-DDGAVVLIDAEGIRVQIPVASLSCLLLGPGTS-VTHAAVKLLARHGCLVVWVG 75 (269)
T ss_pred ccceEEEEccE---EEEE-ECCEEEEEECCCeEEecchhHccEEEEeCCCc-cCHHHHHHHHHCCCEEEEEC
Confidence 34566777662 3433 44455432 1256899 5777888887776 77788888999999999943
No 344
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=43.82 E-value=61 Score=27.86 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|..+ +|.+++..+..+|++|+. .+++..+.+++
T Consensus 164 ~~vlI~g~g~-iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 164 ERVAVLGIGG-LGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688888778 999999888889999888 45566666643
No 345
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.62 E-value=67 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=33.6
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
.+.|++.|..+-+|.+++..+..+|++|.. .++++.+.+++
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 175 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE 175 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 468899999999999999999999999877 34566666665
No 346
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=43.58 E-value=38 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+++|-. +=--.+.|+.+.++|++|++
T Consensus 97 ~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~v 129 (155)
T cd01014 97 AGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTV 129 (155)
T ss_pred CCCCEEEEEeeccchhHHHHHHHHHHCCCcEEE
Confidence 377999999998 66668899999999999999
No 347
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=43.51 E-value=24 Score=31.86 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCcEEEecchhHHHHHHhh--cCCcccccceeeeccceeeEEEecCCCCHHHhhccCCCceeeeccc
Q 041887 58 TKVAYATAFALCQKGIQVVTLREDEHEKLIRS--FGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAERGTMFVPFSQ 135 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~--~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ApkGt~FipfsQ 135 (223)
+=|+-++|.+|.++|.+|+...-+-=..|+-. +|.+ ...- -.+.++-|+.+...- .+-+.|..|+||-|
T Consensus 16 TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~-~~~G-------~a~a~l~~~~W~~~~-~~~~~g~~~LPfG~ 86 (243)
T PF06564_consen 16 TTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLD-DRDG-------WARALLDGADWQQAA-YRYSDGVDFLPFGQ 86 (243)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCc-cccc-------HHHHHhCCCCHHHHh-hccCCCCEEEcCCC
Confidence 45788999999999999999433322333333 2222 1000 012234444433333 55889999999987
Q ss_pred cCC
Q 041887 136 FPP 138 (223)
Q Consensus 136 fPp 138 (223)
...
T Consensus 87 l~~ 89 (243)
T PF06564_consen 87 LTE 89 (243)
T ss_pred CCH
Confidence 663
No 348
>PRK06921 hypothetical protein; Provisional
Probab=43.37 E-value=47 Score=29.67 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=32.0
Q ss_pred CceEEEeccc--ch--HHHHHHHHHHhc-CcEEEe-cchhHHHHHHhh
Q 041887 48 TTQVVIRGIL--TK--VAYATAFALCQK-GIQVVT-LREDEHEKLIRS 89 (223)
Q Consensus 48 t~qV~L~G~~--sK--va~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~ 89 (223)
..-++|.|.+ -| ++.|||..|+++ |+.|+- ...+.++.|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~ 164 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD 164 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH
Confidence 4569999988 44 999999999999 999987 334556666543
No 349
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=43.36 E-value=67 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
|-+.|.+-.+|.++|..|.++|.+|.+ .+.+..+.+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~ 42 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAA 42 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHH
Confidence 566676667999999999999999988 23345555544
No 350
>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a
Probab=43.29 E-value=98 Score=23.05 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHhc-CcEEEe-cchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhccCCCceeeecc
Q 041887 57 LTKVAYATAFALCQK-GIQVVT-LREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKAERGTMFVPFS 134 (223)
Q Consensus 57 ~sKva~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ApkGt~Fipfs 134 (223)
..+..+.-|...|+. |-..++ .+.++...|+..+... ...+||-+.....+.+..=..|+.. .|+
T Consensus 8 ~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~------------~~~~WiGl~~~~~~~~~~w~dg~~~-~y~ 74 (114)
T cd03591 8 GEEKNFDDAQKLCSEAGGTLAMPRNAAENAAIASYVKKG------------NTYAFIGITDLETEGQFVYLDGGPL-TYT 74 (114)
T ss_pred CceeCHHHHHHHHhhcCCEEecCCCHHHHHHHHHHHhcC------------CccEEEecccCCcCCcEEeCCCCCc-ccC
Confidence 467778889999988 555554 7888999888776442 1235665544333333322345444 444
Q ss_pred ccCCC----ccCCCCccccc
Q 041887 135 QFPPA----KKRRKDCTYHL 150 (223)
Q Consensus 135 QfPp~----~~~RkDC~Y~~ 150 (223)
-+-+. ..-..||....
T Consensus 75 ~W~~~ep~~~~~~~~Cv~~~ 94 (114)
T cd03591 75 NWKPGEPNNAGGGEDCVEMY 94 (114)
T ss_pred CcCCCCCCCCCCCCCeEEEC
Confidence 33222 22236787654
No 351
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=43.17 E-value=67 Score=27.44 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=33.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
+.|++.|..+=||.+++..+..+|++|+. .+.++.+.+++.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~ 187 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL 187 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc
Confidence 57899999999999988888888999876 466778887763
No 352
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=43.16 E-value=37 Score=29.05 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=31.9
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHh
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIR 88 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~ 88 (223)
.-+.|++-|. .+||...|..|.+.|.+|++.+++.-+.++.
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~ 49 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVK 49 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH
Confidence 3468888887 7999999999999999999966654344443
No 353
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=43.13 E-value=24 Score=34.29 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=34.2
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhcCCc
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSFGGK 93 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~~~~ 93 (223)
=|++.++|.|||..|-+.|+.|.+ .+..+.+.|.+.+...
T Consensus 257 yg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a 298 (388)
T COG0426 257 YGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDA 298 (388)
T ss_pred cCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhc
Confidence 377899999999999999999999 5667888888886655
No 354
>PRK06526 transposase; Provisional
Probab=43.08 E-value=31 Score=30.74 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=29.1
Q ss_pred ceEEEeccc----chHHHHHHHHHHhcCcEEEecch-hHHHHHH
Q 041887 49 TQVVIRGIL----TKVAYATAFALCQKGIQVVTLRE-DEHEKLI 87 (223)
Q Consensus 49 ~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~-~~y~~lk 87 (223)
.-|+|.|.. |=++.||+..+|++|++|...+- +-.+.++
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 458998887 44999999999999999987333 3344444
No 355
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=42.67 E-value=29 Score=32.49 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=37.6
Q ss_pred CCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 23 PELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 23 P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|.=-+.+|.|.+-+...+++. ..+-|++||+. ++|+.|+....++..+|++
T Consensus 175 P~g~~~vv~g~~~~~~~l~~~---~vd~V~ftGs~-~~g~~i~~~aa~~~~~~~l 225 (453)
T cd07099 175 PQGVLQVVTGDGATGAALIDA---GVDKVAFTGSV-ATGRKVMAAAAERLIPVVL 225 (453)
T ss_pred CCCeEEEEeCCchHHHHHhcC---CCCEEEEECCH-HHHHHHHHHHHhcCCeEEE
Confidence 434478888865444445543 48999999976 5899999998888888876
No 356
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.60 E-value=76 Score=26.41 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=31.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHH
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKL 86 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~l 86 (223)
+.|++.|..+-+|++++..+..+|++|.+ .+.+..+.+
T Consensus 146 ~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~ 185 (328)
T cd08268 146 DSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL 185 (328)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 46889999999999999999999999988 344555555
No 357
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=42.08 E-value=24 Score=25.79 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.9
Q ss_pred cccchHHHHHHHHHHhcCcEEEec
Q 041887 55 GILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 55 G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
|........+|.+|.++|++|.+.
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~ 24 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVV 24 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEE
Confidence 344567789999999999999993
No 358
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=41.47 E-value=83 Score=26.87 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
+.+|.+.|++.|...=+|.+++..+..+|++|++ .+.++.+.++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~ 187 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLK 187 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 5566558999999888999999988999999887 3445555554
No 359
>PRK08727 hypothetical protein; Validated
Probab=41.45 E-value=41 Score=28.97 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=27.5
Q ss_pred ceEEEeccc----chHHHHHHHHHHhcCcEEEecchhH
Q 041887 49 TQVVIRGIL----TKVAYATAFALCQKGIQVVTLREDE 82 (223)
Q Consensus 49 ~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~ 82 (223)
.-++|.|.+ |=++.|++.++|++|.+|...+-++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 459999988 4489999999999999988844444
No 360
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=41.39 E-value=51 Score=34.56 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=45.6
Q ss_pred CceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhh
Q 041887 24 ELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRS 89 (223)
Q Consensus 24 ~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~ 89 (223)
++.+-+|||+--..|||+-.-|. ++-+..||..|-+||+=|.| ..+-|+++...
T Consensus 125 ~~GvplVdG~IPGvaaIvG~apd-----------~e~a~~Ia~Elq~r~~lvfl-~G~l~EQl~e~ 178 (711)
T PRK09529 125 KLGVELVDGTIPGFAVIVGAAPD-----------SEKAKKIIKELQKKNLLTFL-CGEVIEQLIEA 178 (711)
T ss_pred hcCCceecCCCCeEEEEEecCCC-----------hHHHHHHHHHHHHCCcEEEE-cCcHHHHhhhc
Confidence 47889999999999999987653 36678999999999999999 67778777666
No 361
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=41.31 E-value=19 Score=30.65 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=32.4
Q ss_pred ccCCCCCceEEEeccc---chHHHHHHHHHHhcCcEEEecch
Q 041887 42 NSIPDGTTQVVIRGIL---TKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~---sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
..|.+..|-+-+.|.+ +|=++-++.||-++|++|+=.+.
T Consensus 10 ~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 10 AEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred HHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 3456677888888877 88999999999999999998554
No 362
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=41.25 E-value=18 Score=30.60 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=23.5
Q ss_pred EEecccchHHHHHHHHHHhcCcEEEe
Q 041887 52 VIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 52 ~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|+||++.=||+.++.+|+++|..|+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~ 26 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLV 26 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEE
Confidence 57999999999999999999988765
No 363
>PLN02621 nicotinamidase
Probab=40.69 E-value=49 Score=27.77 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+++|-. +=--...|+.+.++|++|++
T Consensus 125 ~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v 157 (197)
T PLN02621 125 IGVKEVIVTGVMTNLCCETTAREAFVRGFRVFF 157 (197)
T ss_pred CCCCEEEEEecccchhHHHHHHHHHHCCCEEEE
Confidence 478899999998 66668889999999999999
No 364
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=39.57 E-value=21 Score=30.45 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=43.2
Q ss_pred ecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhc--CcEEEe----cchhHHHHHHhhcCC
Q 041887 30 VDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQK--GIQVVT----LREDEHEKLIRSFGG 92 (223)
Q Consensus 30 VdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~r--gvqV~~----~~~~~y~~lk~~~~~ 92 (223)
|.|+.|+-.+.-..-.+| ..|||.|++.-|+...+..|.++ |++|+- .+.++-+.+.+++..
T Consensus 31 v~G~dl~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~ 98 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR 98 (177)
T ss_pred cChHHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH
Confidence 457777766554444445 68999999988999999999999 899876 223444445554433
No 365
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=39.50 E-value=49 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++++|+|-. +=--.+.|+...++|++|.+
T Consensus 140 ~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~v 172 (203)
T cd01013 140 SGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFV 172 (203)
T ss_pred cCCCEEEEEEeccChhHHHHHHHHHHCCCeEEE
Confidence 378899999999 55568899999999999999
No 366
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.38 E-value=37 Score=31.76 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=29.6
Q ss_pred CceEEEeccc--ch--HHHHHHHHHHhcCcEEEecchhHHHHHH
Q 041887 48 TTQVVIRGIL--TK--VAYATAFALCQKGIQVVTLREDEHEKLI 87 (223)
Q Consensus 48 t~qV~L~G~~--sK--va~aiA~aLC~rgvqV~~~~~~~y~~lk 87 (223)
+.=||++|+- -| +|.|+|.+|.+.|-+|++.|.|==++|.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 3447888887 55 9999999999999778886665444333
No 367
>PRK05865 hypothetical protein; Provisional
Probab=39.29 E-value=39 Score=35.76 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=27.0
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
.|++||.+.-+|++++.+|.++|++|+..
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l 30 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGI 30 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence 58999999999999999999999999873
No 368
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=39.10 E-value=54 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=28.5
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+|+|-. +=--.+.|+...++|++|++
T Consensus 140 ~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v 172 (212)
T PRK11609 140 HGITELIVMGLATDYCVKFTVLDALALGYQVNV 172 (212)
T ss_pred cCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEE
Confidence 477899999998 66679999999999999998
No 369
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=39.02 E-value=1.1e+02 Score=26.13 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
+.+.|++.|..+=+|.+++.....+|++|++ .+.++.+.++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~ 188 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLR 188 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 4467999999999999999999999999887 4556666664
No 370
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=38.99 E-value=82 Score=27.34 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.+| +.|++.|..+=||.+.+..+..+|++|+. .+.++.+.+++
T Consensus 136 ~~~g-~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 136 VKGG-ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCC-CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4444 47899999999999999988888999876 45667777754
No 371
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.91 E-value=14 Score=35.48 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=55.8
Q ss_pred ccCCCCCc--eEEEeccc-chHHHHHHHHHHhcCcEEEe---cchhHHHHHHhhcCCcccccceeeeccceeeEEEecCC
Q 041887 42 NSIPDGTT--QVVIRGIL-TKVAYATAFALCQKGIQVVT---LREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNG 115 (223)
Q Consensus 42 nsIP~gt~--qV~L~G~~-sKva~aiA~aLC~rgvqV~~---~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~ 115 (223)
++||.|.+ =|..++.. --=|.++|.+|-.|||-|+- ...++...|.+.+... -..++++ .|.+.+=-|-.+
T Consensus 58 eelpd~idiACVvVrsai~Gg~Gs~larall~RGi~VlqEHPl~p~di~~l~rlA~rq-G~~y~vN--TfYPhlpA~rrf 134 (361)
T COG4693 58 EELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ-GRRYLVN--TFYPHLPAVRRF 134 (361)
T ss_pred hhCCCCCCeEEEEEeeeeecCCcHHHHHHHHHcccHHHHhCCCCHHHHHHHHHHHHHh-CcEEEEe--ccCCCcHHHHHH
Confidence 56777665 56666665 44588999999999999998 6778888888876665 4455553 222221112222
Q ss_pred CCHHHhhccCCCceeee
Q 041887 116 LTEEEQSKAERGTMFVP 132 (223)
Q Consensus 116 l~~~eQ~~ApkGt~Fip 132 (223)
|+.-.|..+-+|-.|+-
T Consensus 135 i~~~rql~~~~~p~~ve 151 (361)
T COG4693 135 IEYARQLHRRRGPRFVE 151 (361)
T ss_pred HHHHHHHHHhcCCCeEE
Confidence 34556666666655553
No 372
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=38.69 E-value=1.2e+02 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCCCC-ceEEEecccchHHHHHHHHHHhcCc-EEEe--cchhHHHHHHhhcC
Q 041887 44 IPDGT-TQVVIRGILTKVAYATAFALCQKGI-QVVT--LREDEHEKLIRSFG 91 (223)
Q Consensus 44 IP~gt-~qV~L~G~~sKva~aiA~aLC~rgv-qV~~--~~~~~y~~lk~~~~ 91 (223)
+.+|- +.|++.|..+=||.+.+..+..+|. +|+. .++++.+.+++++.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lG 201 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELG 201 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcC
Confidence 55552 6799999999999999888888898 7876 45567777776543
No 373
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=38.64 E-value=34 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.6
Q ss_pred eeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcE
Q 041887 37 VAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQ 74 (223)
Q Consensus 37 aAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvq 74 (223)
.+.+.+.++....+|+++|..+=+ +++..+|-++|+.
T Consensus 198 ~~~l~~~~~~~~~~v~icGp~~m~-~~v~~~l~~~G~~ 234 (247)
T cd06184 198 LALLRELLLPADADFYLCGPVPFM-QAVREGLKALGVP 234 (247)
T ss_pred HHHHhhccCCCCCEEEEECCHHHH-HHHHHHHHHcCCC
Confidence 334444466667899999999644 8888999888984
No 374
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.60 E-value=91 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.1
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|-+-|+ --+|+.||..++..|++|.+
T Consensus 2 V~ViGa-G~mG~~iA~~~a~~G~~V~l 27 (180)
T PF02737_consen 2 VAVIGA-GTMGRGIAALFARAGYEVTL 27 (180)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEE
T ss_pred EEEEcC-CHHHHHHHHHHHhCCCcEEE
Confidence 344455 57899999999999999999
No 375
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=38.50 E-value=21 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHcCCcc
Q 041887 201 NVDTVWDAALRHGFVP 216 (223)
Q Consensus 201 ~id~vW~AAl~HGF~P 216 (223)
--++|+++|-++||+|
T Consensus 30 tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 30 TRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHHHHHHHHTB-S
T ss_pred HHHHHHHHHHHHCCCC
Confidence 7899999999999998
No 376
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=38.45 E-value=45 Score=32.80 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.4
Q ss_pred CceEEEecccchHHHHHHHHHHhc--CcEEEecc
Q 041887 48 TTQVVIRGILTKVAYATAFALCQK--GIQVVTLR 79 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~r--gvqV~~~~ 79 (223)
.+.||+||++-=||+.++.+|-++ |++|+..+
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 468999999999999999999998 78888744
No 377
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=38.35 E-value=1.1e+02 Score=26.33 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=32.9
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
.+++| ..|++.|..+-+|.+++..+..+|++|+. .+.++.+.++
T Consensus 137 ~~~~g-~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~ 182 (327)
T PRK10754 137 EIKPD-EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK 182 (327)
T ss_pred CCCCC-CEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34444 57888898999999999888888999877 3445555553
No 378
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=38.14 E-value=52 Score=30.99 Aligned_cols=43 Identities=23% Similarity=0.164 Sum_probs=37.2
Q ss_pred CceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 24 ELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 24 ~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
++.+.+|||+--..|+++-.-| .+|-+..||..|-+||+=|.+
T Consensus 117 ~~GvplV~G~IPGva~ivG~a~-----------~~e~~~~I~~e~q~r~~lv~l 159 (287)
T cd01917 117 GLGIKMVDWTIPGEAVILGRAK-----------DSKALKKIVDDLMGRGFMLFL 159 (287)
T ss_pred HcCCceecCCCCeEEEEEecCC-----------ChHHHHHHHHHHHHCCcEEEE
Confidence 4788999999999999998777 456678899999999999988
No 379
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=37.99 E-value=73 Score=30.73 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=41.2
Q ss_pred eEEEecCCceeeeeeeccCCCCCce---EEE---eccc-chHHHHHHHHHHhcCcEEEe
Q 041887 26 KIKVVDGSSLAVAVLTNSIPDGTTQ---VVI---RGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 26 kvrvVdGssLaaAvVlnsIP~gt~q---V~L---~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
++..=||...+++-+.+ |..++. |++ +|++ |=.+|.++.+|-+||.+|++
T Consensus 53 ~v~~pdg~~~~ldw~~~--p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv 109 (345)
T COG0429 53 RLETPDGGFIDLDWSED--PRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVV 109 (345)
T ss_pred EEEcCCCCEEEEeeccC--ccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEE
Confidence 56677999999888877 766665 443 6777 77999999999999999999
No 380
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=37.89 E-value=57 Score=27.56 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=24.9
Q ss_pred EEEeccc----chHHHHHHHHHHhcCcEEEecchhH
Q 041887 51 VVIRGIL----TKVAYATAFALCQKGIQVVTLREDE 82 (223)
Q Consensus 51 V~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~ 82 (223)
|+|||-. |=+|+++...|-++|++|.++..|.
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 5778766 4599999999999999999854443
No 381
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=37.88 E-value=87 Score=26.83 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=33.1
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.+| +.|++.|..+-+|.+++..+...|++|+. .++++.+.+++
T Consensus 137 ~~~~-~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (329)
T cd08250 137 MKSG-ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS 182 (329)
T ss_pred CCCC-CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 3444 46999999999999999888888999887 34455666643
No 382
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=37.86 E-value=47 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=26.6
Q ss_pred ceEEEecccchHHHHHHHHHHhc-CcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQK-GIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~r-gvqV~~~ 78 (223)
+.||+||++-=||+.++.+|.++ |++|...
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~ 32 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGM 32 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEE
Confidence 46999999999999999999987 7999873
No 383
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=37.67 E-value=39 Score=33.25 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=26.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
..||+||++--||++++.+|+++|++|..
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~g~~v~~ 409 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQGIAYEY 409 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhCCCeEEe
Confidence 36999999999999999999999999943
No 384
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=37.49 E-value=40 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCceEEEecCCcee-eeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 23 PELKIKVVDGSSLA-VAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 23 P~LkvrvVdGssLa-aAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|.=-+.+|+|.+-. ...++ + .++.+-|++||+.. +|+.|+.+..+++.+|++
T Consensus 179 p~g~~~~v~g~~~~~~~~l~-~-~~~v~~V~fTGs~~-~g~~i~~~aa~~~~~v~l 231 (456)
T cd07145 179 PPGVINVVTGYGSEVGDEIV-T-NPKVNMISFTGSTA-VGLLIASKAGGTGKKVAL 231 (456)
T ss_pred CcccEEEEeCCCchHHHHHh-c-CCCCCEEEEECCHH-HHHHHHHHHhhcCCceEE
Confidence 55558888884322 22222 1 24788999999875 899999988888888755
No 385
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=37.41 E-value=61 Score=27.20 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+++|-. +=--.+.|..+..+|++|++
T Consensus 136 ~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v 168 (196)
T cd01011 136 RGIDRVDVVGLATDYCVKATALDALKAGFEVRV 168 (196)
T ss_pred CCCCEEEEEEecccHHHHHHHHHHHHCCCEEEE
Confidence 488899999988 66668889999999999998
No 386
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=37.32 E-value=53 Score=29.05 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCceEEEeccc--chHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCccccccee
Q 041887 47 GTTQVVIRGIL--TKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLL 100 (223)
Q Consensus 47 gt~qV~L~G~~--sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~ 100 (223)
+|==||++|+- .-+...+|.+|.++|+-|+-.+.-+|=- +++-|++ ...-|.
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw-~~rtP~~-~a~Dl~ 55 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFW-SERTPEQ-TAADLA 55 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHh-hhCCHHH-HHHHHH
Confidence 34458899988 8889999999999999999866655543 2234444 444443
No 387
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=37.30 E-value=89 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=33.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.|++.|...=||.+++..+..+|++|+. .+.+..+.+++
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57899999999999999988889999876 45677777776
No 388
>PRK07201 short chain dehydrogenase; Provisional
Probab=37.25 E-value=57 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=26.1
Q ss_pred eEEEecccchHHHHHHHHHH--hcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALC--QKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC--~rgvqV~~~ 78 (223)
.||+||++--+|+.++.+|- ++|.+|..+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l 32 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVL 32 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999 589999873
No 389
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=37.16 E-value=1e+02 Score=26.43 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.+| ..|++.| ..=||.+++..+..+|++|+. .+.++.+.+++
T Consensus 153 ~~~g-~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 153 ITPG-DKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCC-CEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4444 4577788 578999999999999999877 45677887776
No 390
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=36.97 E-value=96 Score=25.66 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=33.5
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
.+.+| ..|++.|..+=+|.+++..+..+|++|+. .+.++.+.++
T Consensus 136 ~~~~~-~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 136 RLQPG-ETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCC-CEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 34443 57888999889999999999999999888 3445555554
No 391
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=36.95 E-value=31 Score=32.59 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=26.1
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
|++||.+-=||+++...|++.|.+|+++
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~il 28 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTIL 28 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEE
Confidence 5799999999999999999999999983
No 392
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.46 E-value=35 Score=31.38 Aligned_cols=61 Identities=31% Similarity=0.430 Sum_probs=40.9
Q ss_pred cCCceeeeeeeccCCCCC--ceEEEecccchHHHHHHHHHHhcCc-EEEe-cc-hhHHHHHHhhcCC
Q 041887 31 DGSSLAVAVLTNSIPDGT--TQVVIRGILTKVAYATAFALCQKGI-QVVT-LR-EDEHEKLIRSFGG 92 (223)
Q Consensus 31 dGssLaaAvVlnsIP~gt--~qV~L~G~~sKva~aiA~aLC~rgv-qV~~-~~-~~~y~~lk~~~~~ 92 (223)
||-.+..+..=+.+|... +.|++.|+= =-||||+.+|.+.|+ ++.+ ++ .++.+.|...+++
T Consensus 107 D~~G~~~~L~~~~~~~~~~~~~vlilGAG-GAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~ 172 (283)
T COG0169 107 DGIGFLRALKEFGLPVDVTGKRVLILGAG-GAARAVAFALAEAGAKRITVVNRTRERAEELADLFGE 172 (283)
T ss_pred CHHHHHHHHHhcCCCcccCCCEEEEECCc-HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 444444444433444554 788898876 348999999999996 5666 33 4777888777553
No 393
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.41 E-value=35 Score=33.71 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHhcCcEEEec
Q 041887 58 TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~~ 78 (223)
-|.|+|||.++.+||..|++.
T Consensus 282 GkmG~alA~aa~~~GA~VtlI 302 (475)
T PRK13982 282 GKQGFAIAAAAAAAGAEVTLI 302 (475)
T ss_pred hHHHHHHHHHHHHCCCcEEEE
Confidence 599999999999999999983
No 394
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.29 E-value=70 Score=30.56 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.8
Q ss_pred eccCCC-CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 41 TNSIPD-GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 41 lnsIP~-gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|...|+ ..+.|++-| .-+.|+++|.+|.++|++|...+
T Consensus 7 ~~~~~~~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 7 LSALPQELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred hhhcccccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEEC
Confidence 444555 556788888 55789999999999999999944
No 395
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=36.25 E-value=22 Score=35.14 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=83.6
Q ss_pred ccccceeeEeecCC-ceEEEecCCceeeeee-eccCCC--CCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHH
Q 041887 11 LNRYGGLFVHKNPE-LKIKVVDGSSLAVAVL-TNSIPD--GTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKL 86 (223)
Q Consensus 11 LN~~Gelyv~k~P~-LkvrvVdGssLaaAvV-lnsIP~--gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~l 86 (223)
|-++-.-|..--|. |++|-+|.-+.+--.| .|+|-+ .|.+|=+-|= --.|+..|.+|-+.|..|.+.++.+|+.+
T Consensus 11 l~~~~~t~~~~~p~~~~~~a~~~~~i~d~~~~~~s~~~~k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssa 89 (480)
T KOG2380|consen 11 LRRNSPTFLISPPRSLRIRAIDAAQIFDYMVSEDSIEQWKATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSA 89 (480)
T ss_pred cccCCCceeccCcHHHHHHhhhhhhhhhcccCcchhhhcccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHH
Confidence 33344445555554 5677666444332222 233332 4445544442 45899999999999999999888889999
Q ss_pred HhhcCCcc--ccccee--------eecc----------ce---eeE-EEecCCCCHHHhhccCCCceeeeccccCCCccC
Q 041887 87 IRSFGGKS--ESKNLL--------VSRS----------YC---QKI-WLVGNGLTEEEQSKAERGTMFVPFSQFPPAKKR 142 (223)
Q Consensus 87 k~~~~~~~--~~~~L~--------~~~~----------~~---~K~-WlVGd~l~~~eQ~~ApkGt~FipfsQfPp~~~~ 142 (223)
+......- .-++|+ .+++ |. .|+ =|+||.++=+ +|+=+.|..| +
T Consensus 90 a~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfqrlrrgtlfvdvlSvK----efek~lfekY--------L 157 (480)
T KOG2380|consen 90 AEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVK----EFEKELFEKY--------L 157 (480)
T ss_pred HHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCchhhccceeEeeeeecc----hhHHHHHHHh--------C
Confidence 98833320 112232 2222 11 244 6777766653 4555566655 3
Q ss_pred CCCcccccCCcccCCccc
Q 041887 143 RKDCTYHLTPAMATPAAL 160 (223)
Q Consensus 143 RkDC~Y~~tPAM~~P~~~ 160 (223)
-|||-..+|-.|.=|++.
T Consensus 158 PkdfDIlctHpmfGPksv 175 (480)
T KOG2380|consen 158 PKDFDILCTHPMFGPKSV 175 (480)
T ss_pred ccccceEeecCCcCCCcC
Confidence 489999999999999943
No 396
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=35.96 E-value=80 Score=29.44 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=33.5
Q ss_pred ceEEEecccc--hHHHHHHHHHHhcCcEEEecch-hHHHHHHhhcCCccccccee
Q 041887 49 TQVVIRGILT--KVAYATAFALCQKGIQVVTLRE-DEHEKLIRSFGGKSESKNLL 100 (223)
Q Consensus 49 ~qV~L~G~~s--Kva~aiA~aLC~rgvqV~~~~~-~~y~~lk~~~~~~~~~~~L~ 100 (223)
|..|++|-.+ -+|+.||.+|.+.|-+...++- |+.++=-+++.++ ..+.++
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~-~~s~~v 60 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEE-LGSDLV 60 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhh-ccCCeE
Confidence 5677888774 4999999999999999998443 4333322234444 434444
No 397
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=35.92 E-value=49 Score=28.43 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=49.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCccccccee-eeccceeeE--EEecC--CCCHHHhhc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLL-VSRSYCQKI--WLVGN--GLTEEEQSK 123 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~-~~~~~~~K~--WlVGd--~l~~~eQ~~ 123 (223)
|+|++.|- -|+|+.+|.+|-..|.+|++...|-...|+....- ++-.-+ +.-. ..-+ +--|. -++.++=..
T Consensus 24 k~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG--f~v~~~~~a~~-~adi~vtaTG~~~vi~~e~~~~ 99 (162)
T PF00670_consen 24 KRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG--FEVMTLEEALR-DADIFVTATGNKDVITGEHFRQ 99 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT---EEE-HHHHTT-T-SEEEE-SSSSSSB-HHHHHH
T ss_pred CEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC--cEecCHHHHHh-hCCEEEECCCCccccCHHHHHH
Confidence 34555443 69999999999999999999666666666544211 111000 0001 1122 33453 368888888
Q ss_pred cCCCceeeeccccCCC
Q 041887 124 AERGTMFVPFSQFPPA 139 (223)
Q Consensus 124 ApkGt~FipfsQfPp~ 139 (223)
.+.|+...-..+|+--
T Consensus 100 mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 100 MKDGAILANAGHFDVE 115 (162)
T ss_dssp S-TTEEEEESSSSTTS
T ss_pred hcCCeEEeccCcCcee
Confidence 8999998888777653
No 398
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.80 E-value=54 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+.|++.|.. +.|.++|.+|.++|++|...
T Consensus 6 ~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLG-GTGISMIAYLRKNGAEVAAY 34 (445)
T ss_pred CEEEEECCC-HHHHHHHHHHHHCCCEEEEE
Confidence 578899976 89999999999999999994
No 399
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=35.62 E-value=38 Score=32.90 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=37.7
Q ss_pred cCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.=-+.+|+|..-.+...+. -| .+-|++||++ ++|+.|+.+..++..+|++
T Consensus 163 lp~~~v~vv~g~~~~~~~l~~-~~--~d~i~FTGS~-~vG~~V~~~aa~~l~pv~l 214 (493)
T PTZ00381 163 LDPSYVRVIEGGVEVTTELLK-EP--FDHIFFTGSP-RVGKLVMQAAAENLTPCTL 214 (493)
T ss_pred CCcCEEEEecCCHHHHHHHHh-CC--CCEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence 466668889885333333444 24 7899999976 5999999988888888765
No 400
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=35.31 E-value=96 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|...=+|.+++..+..+|++|++ .+.++.+.+++
T Consensus 140 ~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 181 (323)
T cd05282 140 DWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA 181 (323)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh
Confidence 57888899888999999999999999887 45566777743
No 401
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=35.24 E-value=66 Score=26.52 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHH
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLI 87 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk 87 (223)
.-+.|++.|. .+||...|..|.+.|.+|++.+++.-+.++
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~~~~l~ 51 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEICKEMK 51 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCccCHHHH
Confidence 3467888876 489999999999999999996665444444
No 402
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=35.23 E-value=1.4e+02 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=28.1
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.+++| +.|+++|..+=+|.+++..+..+|++|.+
T Consensus 136 ~~~~~-~~vlv~g~~~~~g~~~~~~a~~~g~~v~~ 169 (325)
T TIGR02824 136 GLKAG-ETVLIHGGASGIGTTAIQLAKAFGARVFT 169 (325)
T ss_pred CCCCC-CEEEEEcCcchHHHHHHHHHHHcCCEEEE
Confidence 34444 58889998888999999999999999887
No 403
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=35.12 E-value=36 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.6
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|...++..-++.+|.++|++|.+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v 34 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTV 34 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CChHHHHHHHHHHHHHHCCCEEEE
Confidence 366689999999999999999999
No 404
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.79 E-value=64 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.1
Q ss_pred eEEEecccchHHHHHHHHHHh-cCcEEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQ-KGIQVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~-rgvqV~~ 77 (223)
.|.+.|.+=|+|++|+.++-+ .|+++.-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~ 30 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVG 30 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEE
Confidence 588999999999999999999 6998776
No 405
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=34.72 E-value=43 Score=27.90 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=34.0
Q ss_pred ecCCceEEEecCC---------ceeeeeeec-cCCCCCceEEEecccchHHHHHHHHHHhcCcE
Q 041887 21 KNPELKIKVVDGS---------SLAVAVLTN-SIPDGTTQVVIRGILTKVAYATAFALCQKGIQ 74 (223)
Q Consensus 21 k~P~LkvrvVdGs---------sLaaAvVln-sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvq 74 (223)
++|++++.++... .+. ..+.. .++.+..+|+++|.. ...+++..+|.++|+.
T Consensus 157 ~~~~~~~~~~~s~~~~~~~~~g~v~-~~~~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~~G~~ 218 (228)
T cd06209 157 RLPGFSFRTVVADPDSWHPRKGYVT-DHLEAEDLNDGDVDVYLCGPP-PMVDAVRSWLDEQGIE 218 (228)
T ss_pred hCCCeEEEEEEcCCCccCCCcCCcc-HHHHHhhccCCCcEEEEeCCH-HHHHHHHHHHHHcCCC
Confidence 5688887776331 122 22222 245555679999966 5569999999999983
No 406
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.45 E-value=58 Score=31.88 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=40.7
Q ss_pred eEEEecCCceeeeeeeccCC-CCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 26 KIKVVDGSSLAVAVLTNSIP-DGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 26 kvrvVdGssLaaAvVlnsIP-~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+++-++|.+-.++|=.-.-+ ...+-||..|++-|||+-|+.-|-+||+.|-.
T Consensus 56 ~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra 108 (411)
T KOG1203|consen 56 PISPVTGTTSEAEVSPPNNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRA 108 (411)
T ss_pred CCCccccccceeeeccCCCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeee
Confidence 35567777777766533333 45668999999999999999999999988887
No 407
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=34.42 E-value=50 Score=32.27 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=37.7
Q ss_pred cCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.=-+.+|+|..-..+..+. ++.+.|++||++ .+|+.|+.+..++..+|++
T Consensus 166 lp~gvv~vv~G~~~~~~~l~~---~~vd~V~FTGS~-~~G~~I~~~aa~~l~~v~L 217 (484)
T PLN02174 166 LDSSAVRVVEGAVTETTALLE---QKWDKIFYTGSS-KIGRVIMAAAAKHLTPVVL 217 (484)
T ss_pred CCCCEEEEEECChHHHHHHhc---ccCCEEEEECCh-HHHHHHHHHHHhcCCcEEE
Confidence 466678899885433333332 578999999987 6788888877777777776
No 408
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=34.26 E-value=34 Score=28.77 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=22.2
Q ss_pred ecccchHHHHHHHHHHh-cCcEEEe
Q 041887 54 RGILTKVAYATAFALCQ-KGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~-rgvqV~~ 77 (223)
+|++.|+|++||..+.+ .|++|.+
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~ 36 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTI 36 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEE
Confidence 58999999999999998 9999987
No 409
>TIGR03640 cas1_DVULG CRISPR-associated endonuclease Cas1, DVULG subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.
Probab=34.18 E-value=83 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.4
Q ss_pred eccCC-CCCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 41 TNSIP-DGTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 41 lnsIP-~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
..+|| .+.++|++.|+.+ +..+.-.+|.++||.|+..
T Consensus 31 ~~~iP~~~i~~Ivi~g~~~-ist~al~~l~~~~I~v~f~ 68 (340)
T TIGR03640 31 KARVPLHHLGGIVCFGNVG-LSPFLMGRCAEDGISLVFL 68 (340)
T ss_pred EEEechhheeEEEEEcCCC-cCHHHHHHHHHCCCEEEEE
Confidence 56789 6888999999765 5566666799999999983
No 410
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=34.13 E-value=15 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=29.2
Q ss_pred CceEEEeccc-chHHHHHHHHHHhcCcEEEecchhHHHHHHh
Q 041887 48 TTQVVIRGIL-TKVAYATAFALCQKGIQVVTLREDEHEKLIR 88 (223)
Q Consensus 48 t~qV~L~G~~-sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~ 88 (223)
..+||++-+. ++-...+...+.++|++|...+++.+++|-.
T Consensus 18 i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~ 59 (76)
T PF08032_consen 18 IKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSD 59 (76)
T ss_dssp EEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTT
T ss_pred ccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcC
Confidence 7899998773 4434677777888899999989998887754
No 411
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=33.97 E-value=1.1e+02 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=30.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHH
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKL 86 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~l 86 (223)
..|++.|..+=+|.+++..+..+|++|++ .+.++-+.+
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA 206 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 57888999888999999999999999988 344555555
No 412
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.82 E-value=77 Score=26.07 Aligned_cols=32 Identities=38% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCCceEEEecccchH-HHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGILTKV-AYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~sKv-a~aiA~aLC~rgvqV~~ 77 (223)
.|.++|+++|-.+-+ -.+.|+-+.++|++|++
T Consensus 131 ~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v 163 (205)
T COG1335 131 LGIDTVVVCGIATDICVLATARDAFDLGYQVTL 163 (205)
T ss_pred CCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEE
Confidence 699999999999653 36778888899999988
No 413
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=33.71 E-value=1.1e+02 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=32.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|+..=+|.+++..+..+|++|++ .+.++.+.+++
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 183 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK 183 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57999999888999999999999999766 45567777743
No 414
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.69 E-value=81 Score=31.60 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.3
Q ss_pred ccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 42 NSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 42 nsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|+...+.|++.|- ..+|+.+|..|.++|+.|++ .+.++-+.+++
T Consensus 394 ~~~~~~~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 394 DEIDEQQPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred cccccccCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 355556789999986 48999999999999999988 55666666654
No 415
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.63 E-value=1.5e+02 Score=25.84 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=39.2
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhcc
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSKA 124 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~A 124 (223)
++.+-|. ..+|+.+|..|.++|..|+.... +-+..++.+..+ ..-.+++||..+++..+.|
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~-d~~~~~~~~~~~------------~~~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDR-DEERVEEFLADE------------LDTHVVIGDATDEDVLEEA 62 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCceEEEEc-CHHHHHHHhhhh------------cceEEEEecCCCHHHHHhc
Confidence 3444443 58999999999999999999322 222222222222 0113688888888888776
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.01 E-value=85 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHhcCcEEEecc
Q 041887 58 TKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~~~ 79 (223)
|-++..+|..|.++|.+|++.+
T Consensus 13 tt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 13 TTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHHHHHHHCCCeEEEEC
Confidence 5588999999999999999854
No 417
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=32.86 E-value=1.1e+02 Score=27.38 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=26.8
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHH
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEK 85 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~ 85 (223)
.|.+.| .--+|.++|..|+++|++|++ .+++..+.
T Consensus 4 ~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~ 40 (308)
T PRK06129 4 SVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAA 40 (308)
T ss_pred EEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHH
Confidence 577777 446999999999999999999 33344444
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=32.52 E-value=1.1e+02 Score=26.96 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=26.6
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEec--chhHHHHHHh
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTL--REDEHEKLIR 88 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~--~~~~y~~lk~ 88 (223)
|-+-| .-.+|.++|.+|.++|++|... +++..+.++.
T Consensus 3 I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 3 IGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred EEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 4579999999999999999883 3344444443
No 419
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=32.47 E-value=88 Score=28.84 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=29.5
Q ss_pred ccCCC-CCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 42 NSIPD-GTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 42 nsIP~-gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.+||- +.++|++.|+.+ +.-++-..|.++||.|+..+
T Consensus 27 ~~iP~~~i~~ivi~g~~~-ist~al~~l~~~gI~v~f~~ 64 (322)
T TIGR03641 27 KYIPVENIDEIYVFGEVS-LNSKALSFLSKKGIPIHFFN 64 (322)
T ss_pred EEechhhcCeEEEEcCCc-cCHHHHHHHHHCCCeEEEEC
Confidence 47884 888999999776 66667777999999999843
No 420
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.25 E-value=57 Score=27.85 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCcEEEec-chhHHHHHHhh
Q 041887 60 VAYATAFALCQKGIQVVTL-REDEHEKLIRS 89 (223)
Q Consensus 60 va~aiA~aLC~rgvqV~~~-~~~~y~~lk~~ 89 (223)
||..+|.+|++.|.+|.+. +.+.++.+++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 5788999999999999883 44567888765
No 421
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=32.22 E-value=1.2e+02 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.|++.| ..-+|.+++..+..+|++|+. .+++..+.++.
T Consensus 167 ~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 207 (345)
T cd08260 167 EWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARE 207 (345)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 4788899 688999999999999999877 46677777754
No 422
>PHA03112 IL-18 binding protein; Provisional
Probab=32.06 E-value=29 Score=29.48 Aligned_cols=46 Identities=28% Similarity=0.494 Sum_probs=28.9
Q ss_pred EEEecCCCCHHHhhcc---CCCceeeeccccCCC--ccCCCCcc-cccCCcccCC
Q 041887 109 IWLVGNGLTEEEQSKA---ERGTMFVPFSQFPPA--KKRRKDCT-YHLTPAMATP 157 (223)
Q Consensus 109 ~WlVGd~l~~~eQ~~A---pkGt~FipfsQfPp~--~~~RkDC~-Y~~tPAM~~P 157 (223)
.||+|+.=+.+||.-. +.|.. .+-.|-. .+.|.||. |+-||.|+.-
T Consensus 58 YWl~gn~~s~~d~~~~~hy~e~~~---~~~~~~~~~~~~~~~l~l~~vt~~~~~T 109 (141)
T PHA03112 58 YWLIGNNKSDVDQKPIEHYGEGIY---ESEKPRTCDNEPRTDLIVYNVTDEMKFT 109 (141)
T ss_pred EEEcCCCccchhcccccccccccc---CCccccccCCcceeEEEEEecCCcceec
Confidence 3999986666677632 22221 1112222 57889999 9999998755
No 423
>PRK04017 hypothetical protein; Provisional
Probab=31.91 E-value=36 Score=28.49 Aligned_cols=55 Identities=24% Similarity=0.114 Sum_probs=38.1
Q ss_pred EecCCceeeeeeeccCCCCCceEEEeccc----chHHHHHHHHHHhcCcEEEecchhHHHH
Q 041887 29 VVDGSSLAVAVLTNSIPDGTTQVVIRGIL----TKVAYATAFALCQKGIQVVTLREDEHEK 85 (223)
Q Consensus 29 vVdGssLaaAvVlnsIP~gt~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y~~ 85 (223)
+.+|++++-.. ..|-.+.+.|++..+. .|+++-+..+|+.+|++|-+..+++..+
T Consensus 48 ~t~g~~~~~~~--e~ia~~~r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd~~~R~~l~~ 106 (132)
T PRK04017 48 KVSRTPLAEIA--ELIASRGKEVIILTDFDRKGEELAKKLSEYLQGYGIKVDTEIRRELFS 106 (132)
T ss_pred EECCeecchHH--HHHHhcCCeEEEEECCCcchHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 45566654444 5555678899988776 5788888888999999999933333333
No 424
>PRK12404 stage V sporulation protein AD; Provisional
Probab=31.79 E-value=35 Score=32.65 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.5
Q ss_pred eEEEecccchHHHHHHHHHHhc-CcEE
Q 041887 50 QVVIRGILTKVAYATAFALCQK-GIQV 75 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~r-gvqV 75 (223)
.+++||++.|||+.|+.-|+++ |+.+
T Consensus 227 DlI~TGDLg~vG~~i~~~ll~~~g~~~ 253 (334)
T PRK12404 227 DLIVTGDLGHVGREIAKDLLHKHGVKV 253 (334)
T ss_pred cEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999999876 8875
No 425
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.47 E-value=64 Score=25.31 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=27.7
Q ss_pred EEEeccc----chHHHHHHHHHHhcCcEEEecchhHHHHHHhh
Q 041887 51 VVIRGIL----TKVAYATAFALCQKGIQVVTLREDEHEKLIRS 89 (223)
Q Consensus 51 V~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~ 89 (223)
++++|+. |=++..+|.+|.++|.+|++.+.|. +.+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~ 43 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPER 43 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHH
Confidence 5676665 4588999999999999999856555 334333
No 426
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.90 E-value=71 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=24.9
Q ss_pred eEEEecccchHHHHHHHHHHhcCc-------EEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGI-------QVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgv-------qV~~~ 78 (223)
+|.++|++..||+++|..|+.+++ +|.+.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 589999999999999999999664 67773
No 427
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=30.70 E-value=24 Score=31.03 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=17.6
Q ss_pred CceeeeccccCCCccCC-CCcccccCCc
Q 041887 127 GTMFVPFSQFPPAKKRR-KDCTYHLTPA 153 (223)
Q Consensus 127 Gt~FipfsQfPp~~~~R-kDC~Y~~tPA 153 (223)
+-+.+|| ||- .++- |||.|--||-
T Consensus 92 tEqlaPf--fp~-f~ynPkD~RfIGTPv 116 (175)
T COG4741 92 TEQLAPF--FPE-FKYNPKDARFIGTPV 116 (175)
T ss_pred Hhhhccc--ccC-CCcCCccceeeCCCc
Confidence 3455777 774 5555 9999999985
No 428
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=30.39 E-value=51 Score=28.84 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=27.8
Q ss_pred EEEeccc----chHHHHHHHHHHhcCcEEEecchhHHHHHHh
Q 041887 51 VVIRGIL----TKVAYATAFALCQKGIQVVTLREDEHEKLIR 88 (223)
Q Consensus 51 V~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~ 88 (223)
+|++|+- |=++.++|.+++++|.+|++.+.|--.+|-.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~ 44 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSD 44 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHH
Confidence 5666654 3489999999999999999855554445443
No 429
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=30.30 E-value=1.7e+02 Score=25.39 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=32.4
Q ss_pred cCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 43 SIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 43 sIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
.+.+|. .|++.|. +-+|.+++..+..+|++|+. .+.+..+.+++
T Consensus 156 ~l~~g~-~vLI~g~-g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGD-TVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCC-EEEEECC-CHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 455554 6777874 68999999988888999977 45666666643
No 430
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=30.19 E-value=42 Score=32.18 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEecccchHHHHHHHHHHhc-CcEE
Q 041887 50 QVVIRGILTKVAYATAFALCQK-GIQV 75 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~r-gvqV 75 (223)
..++||++.+||+.|..-|+++ |+.+
T Consensus 224 DlIvTGDLg~vG~~il~~Ll~~~G~~i 250 (329)
T PF07451_consen 224 DLIVTGDLGKVGRKILRDLLKEKGYDI 250 (329)
T ss_dssp SEEEESS-HHHHHHHHHHHHHHTT---
T ss_pred CeEEecchHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999999887 7764
No 431
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=30.19 E-value=1.5e+02 Score=25.13 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=32.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|...=+|.+++..+..+|++|+. .++++.+.++.
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~ 185 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA 185 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46899999888999999999999999887 34566666643
No 432
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=30.09 E-value=1.5e+02 Score=26.59 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=33.8
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhhc
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRSF 90 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~~ 90 (223)
+.|++.|..+=||.+.+..+..+|++|+. .+.++.+.+++++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 57999999999999999888889999876 4566777776543
No 433
>PRK05642 DNA replication initiation factor; Validated
Probab=30.02 E-value=81 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.0
Q ss_pred ceEEEeccc----chHHHHHHHHHHhcCcEEEecchhHHH
Q 041887 49 TQVVIRGIL----TKVAYATAFALCQKGIQVVTLREDEHE 84 (223)
Q Consensus 49 ~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y~ 84 (223)
..++|.|.. |=++.|++.+++++|.+|+..+.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 468998887 448999999999999999886666653
No 434
>PRK09183 transposase/IS protein; Provisional
Probab=29.95 E-value=85 Score=27.81 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCCCCceEEEeccc----chHHHHHHHHHHhcCcEEEecch-hHHHHHHh
Q 041887 44 IPDGTTQVVIRGIL----TKVAYATAFALCQKGIQVVTLRE-DEHEKLIR 88 (223)
Q Consensus 44 IP~gt~qV~L~G~~----sKva~aiA~aLC~rgvqV~~~~~-~~y~~lk~ 88 (223)
|++|. -|+|.|.. |=++.+|+..+|++|.+|...+. +-...++.
T Consensus 99 i~~~~-~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~ 147 (259)
T PRK09183 99 IERNE-NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLST 147 (259)
T ss_pred hhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHH
Confidence 44543 58888887 44999999999999999987443 33334443
No 435
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=29.89 E-value=77 Score=33.57 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=26.8
Q ss_pred CceEEEecccchHHHHHHHHHHhcC----cEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKG----IQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rg----vqV~~ 77 (223)
.+.||+||++.=+|..++..|.++| ++|..
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~ 1004 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFA 1004 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEE
Confidence 4689999999999999999999887 88877
No 436
>PRK08304 stage V sporulation protein AD; Validated
Probab=29.88 E-value=41 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.3
Q ss_pred eEEEecccchHHHHHHHHHHhc-CcEE
Q 041887 50 QVVIRGILTKVAYATAFALCQK-GIQV 75 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~r-gvqV 75 (223)
.+++||++.|||+.|+.-|+++ |+.+
T Consensus 229 Dli~tGDlg~vG~~i~~~ll~~~g~~~ 255 (337)
T PRK08304 229 DLIVTGDLGRVGREILKELLKEEGYDI 255 (337)
T ss_pred cEEEEcchHHHHHHHHHHHHHHhCCCh
Confidence 7899999999999999999976 7754
No 437
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=29.87 E-value=66 Score=26.44 Aligned_cols=45 Identities=27% Similarity=0.195 Sum_probs=31.4
Q ss_pred eeccCCCCCceEEEecccchHHHHHHHHHHhc-CcEEEecchhHHHHHH
Q 041887 40 LTNSIPDGTTQVVIRGILTKVAYATAFALCQK-GIQVVTLREDEHEKLI 87 (223)
Q Consensus 40 VlnsIP~gt~qV~L~G~~sKva~aiA~aLC~r-gvqV~~~~~~~y~~lk 87 (223)
...-|+.|.. |||-+.++ ...+|.+|.++ ++.|+++|-.-...|.
T Consensus 13 A~~~I~~~~~-Ifld~GtT--~~~la~~L~~~~~ltVvTnsl~ia~~l~ 58 (161)
T PF00455_consen 13 AASLIEDGDT-IFLDSGTT--TLELAKYLPDKKNLTVVTNSLPIANELS 58 (161)
T ss_pred HHHhCCCCCE-EEEECchH--HHHHHHHhhcCCceEEEECCHHHHHHHH
Confidence 3556777655 77755554 57899999999 9999996554444443
No 438
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.70 E-value=1.3e+02 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=27.9
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+|-+-|. -.+|+++|..|.++|.+|++ .+.+.-+.+++
T Consensus 3 ~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 4556665 47899999999999999999 44455555443
No 439
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=29.67 E-value=1.3e+02 Score=26.03 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcE-EEe--cchhHHHHHH
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQ-VVT--LREDEHEKLI 87 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvq-V~~--~~~~~y~~lk 87 (223)
+++| +.|++.|+ +-+|.+++..+..+|++ |.. .+++..+.++
T Consensus 163 ~~~g-~~VlV~g~-g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~ 207 (343)
T cd08235 163 IKPG-DTVLVIGA-GPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK 207 (343)
T ss_pred CCCC-CEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 4444 47777884 67999999988888999 665 4556666664
No 440
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=29.49 E-value=53 Score=31.17 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=33.9
Q ss_pred CCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 23 PELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 23 P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|.=-+.+|+|..-..+.++. | +.+-|.+||++ .+|+.|+....++..+|++
T Consensus 155 p~gv~~vv~g~~~~~~~l~~--~-~vd~V~fTGs~-~~g~~i~~~a~~~~~~~~l 205 (443)
T cd07132 155 DKECYPVVLGGVEETTELLK--Q-RFDYIFYTGST-SVGKIVMQAAAKHLTPVTL 205 (443)
T ss_pred CcCeEEEEeCCHHHHHHHHh--C-CCCEEEEECCh-HHHHHHHHHHHhhCCceEE
Confidence 44457788875433334443 4 79999999976 5677777776666666654
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=29.44 E-value=96 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=25.7
Q ss_pred EEEeccc----chHHHHHHHHHHhcCcEEEecchhHH
Q 041887 51 VVIRGIL----TKVAYATAFALCQKGIQVVTLREDEH 83 (223)
Q Consensus 51 V~L~G~~----sKva~aiA~aLC~rgvqV~~~~~~~y 83 (223)
|+|+|-. |-+|+++|.+|.++|+.|...+.|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 5677766 66999999999999999887555543
No 442
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.43 E-value=86 Score=22.85 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCceEEEeccc-chHHHHHHHHHHhcCcEEEe
Q 041887 46 DGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 46 ~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~ 77 (223)
+.++=.+|-|.. +-+|..++..|-.+|++|.-
T Consensus 2 ~~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~ 34 (90)
T PF13399_consen 2 SDVRVEVLNGTGVSGLAARVADALRNRGFTVVE 34 (90)
T ss_pred CceEEEEEECcCCcCHHHHHHHHHHHCCCceee
Confidence 333333444444 67899999999999999975
No 443
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=29.40 E-value=52 Score=27.84 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
+|+..|+- =.|-+.|++|.++|++|++.
T Consensus 3 dV~IvGaG-~aGl~~A~~L~~~G~~v~i~ 30 (356)
T PF01494_consen 3 DVAIVGAG-PAGLAAALALARAGIDVTII 30 (356)
T ss_dssp EEEEE--S-HHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCC-HHHHHHHHHHHhcccccccc
Confidence 45666654 23778999999999999993
No 444
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=29.24 E-value=1.2e+02 Score=30.06 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=53.7
Q ss_pred cccccccccccc--------cceeeEeecCCceEEEe-cCCceeeeeeeccCCCCCceEEEeccc-chHHHHHHHHHHhc
Q 041887 2 EIINYQGEELNR--------YGGLFVHKNPELKIKVV-DGSSLAVAVLTNSIPDGTTQVVIRGIL-TKVAYATAFALCQK 71 (223)
Q Consensus 2 ~~~LNq~e~LN~--------~Gelyv~k~P~LkvrvV-dGssLaaAvVlnsIP~gt~qV~L~G~~-sKva~aiA~aLC~r 71 (223)
++|+.+++.|+. -|-.-|+-|++.||-|+ -|+-|.. .|+. +-.|.. +.-+..|+..|.+.
T Consensus 156 ~~l~~~g~~i~p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~--------~~~~--~~~g~i~dsn~~~l~~~l~~~ 225 (633)
T PRK14498 156 ELILPKGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVE--------PGEP--LKPGKIYDVNSYTLAAAVEEA 225 (633)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEEEecCcEEEEEecCccccC--------CCCC--CCCCEEEEChHHHHHHHHHHC
Confidence 467788888873 36666777777777775 6666542 2222 224555 77788899999999
Q ss_pred CcEEEe--cchhHHHHHHhhc
Q 041887 72 GIQVVT--LREDEHEKLIRSF 90 (223)
Q Consensus 72 gvqV~~--~~~~~y~~lk~~~ 90 (223)
|++|+. .-+|+.+.|++.+
T Consensus 226 g~~~~~~~~v~Dd~~~i~~~l 246 (633)
T PRK14498 226 GGEPVRYGIVPDDEEELEAAL 246 (633)
T ss_pred CCEEEEEEEeCCCHHHHHHHH
Confidence 999876 4567777777663
No 445
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.13 E-value=1.6e+02 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=31.5
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHH
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLI 87 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk 87 (223)
+.|++.|..+=+|.+++..+..+|++|++ .+.++.+.++
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 184 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK 184 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888999888999999999999999887 4556666663
No 446
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=29.13 E-value=59 Score=31.56 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEec
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~ 78 (223)
..+.|++.|. .-+|+++|.+|.+.|++|.+.
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~ 361 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTLARAGAELLIF 361 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Confidence 3467999996 699999999999999998883
No 447
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=28.97 E-value=1.8e+02 Score=23.98 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+++| +.|++.|...=+|.+++..+...|++|++
T Consensus 142 ~~~~-~~vlv~g~~g~~g~~~~~~a~~~g~~v~~ 174 (309)
T cd05289 142 LKAG-QTVLIHGAAGGVGSFAVQLAKARGARVIA 174 (309)
T ss_pred CCCC-CEEEEecCCchHHHHHHHHHHHcCCEEEE
Confidence 4444 57888998888999999999999999988
No 448
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=28.86 E-value=43 Score=31.91 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.2
Q ss_pred eEEEecccchHHHHHHHHHHhc-CcEE
Q 041887 50 QVVIRGILTKVAYATAFALCQK-GIQV 75 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~r-gvqV 75 (223)
.+++||++.|||+.|+.-|+++ |+.+
T Consensus 223 d~i~tgdlg~vg~~i~~~ll~~~g~~~ 249 (327)
T TIGR02845 223 DLIVTGDLARVGSEILRKLLKERGYDV 249 (327)
T ss_pred cEEEecchHHHHHHHHHHHHHHcCCCh
Confidence 7899999999999999999876 7764
No 449
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=28.80 E-value=47 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=22.7
Q ss_pred eEEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 50 QVVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
+|+..|+= =+|.++|..|.++|.+|++..+
T Consensus 5 dv~IIGgG-i~G~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 5 DVIVIGLG-SMGSAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred cEEEECCC-HHHHHHHHHHHHCCCeEEEEec
Confidence 35555553 2588999999999999999543
No 450
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.75 E-value=41 Score=27.95 Aligned_cols=50 Identities=26% Similarity=0.271 Sum_probs=38.5
Q ss_pred EEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhc--CcEEEe
Q 041887 27 IKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQK--GIQVVT 77 (223)
Q Consensus 27 vrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~r--gvqV~~ 77 (223)
..-++|+.|+-. +++...+.-..|||-|++..++..++..|.++ |++++-
T Consensus 26 ~~r~~g~dl~~~-ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 26 PERVTGSDLMPA-LLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred CcccCcHHHHHH-HHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 345778887544 45555554578999999999999999999998 999887
No 451
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.48 E-value=1.4e+02 Score=28.13 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe-----cchhHHHHHHhhcCCc
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT-----LREDEHEKLIRSFGGK 93 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~-----~~~~~y~~lk~~~~~~ 93 (223)
.-|.|++-|..+++ .+++..|.+.|.+|+. .+++.|+...+.++.+
T Consensus 273 ~Gkrv~i~gd~~~~-~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~ 323 (407)
T TIGR01279 273 RGKKIFFFGDNLLE-LPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGG 323 (407)
T ss_pred CCCEEEEECCchHH-HHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCC
Confidence 34678888888887 8999999999999987 2345556665555543
No 452
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=28.43 E-value=1.5e+02 Score=29.12 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCceEEEecccchHHHHHHHHHHhcCcEEEe--cch-hHHHHHHhhcC------Ccccccceeeec---c-ceeeEEEec
Q 041887 47 GTTQVVIRGILTKVAYATAFALCQKGIQVVT--LRE-DEHEKLIRSFG------GKSESKNLLVSR---S-YCQKIWLVG 113 (223)
Q Consensus 47 gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~-~~y~~lk~~~~------~~~~~~~L~~~~---~-~~~K~WlVG 113 (223)
..+.|++-|+- ++|.-+|.+|+++|++.++ +++ ++-+.|.+++. ++ ....|.... | -+...-||+
T Consensus 177 ~~~~vlvIGAG-em~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~e-l~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 177 KDKKVLVIGAG-EMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEE-LLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccCeEEEEccc-HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHH-HHHhhhhCCEEEEecCCCccccC
Confidence 45689998874 7889999999999987776 332 55556666655 22 222222111 1 112445664
Q ss_pred CCCCHHHhhccCCCceeeeccccCCC--ccCC-CCccc
Q 041887 114 NGLTEEEQSKAERGTMFVPFSQFPPA--KKRR-KDCTY 148 (223)
Q Consensus 114 d~l~~~eQ~~ApkGt~FipfsQfPp~--~~~R-kDC~Y 148 (223)
... -++..+.+++-+++-+. +|+. +.+. -++.|
T Consensus 255 ~~~-ve~a~~~r~~~livDia-vPRdie~~v~~l~~v~ 290 (414)
T COG0373 255 REM-VERALKIRKRLLIVDIA-VPRDVEPEVGELPNVF 290 (414)
T ss_pred HHH-HHHHHhcccCeEEEEec-CCCCCCccccCcCCeE
Confidence 433 34667778888888998 9987 4444 34444
No 453
>PRK13604 luxD acyl transferase; Provisional
Probab=28.40 E-value=1.9e+02 Score=27.09 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=35.3
Q ss_pred EEEecCCceeeeeeecc--CCCCCceEE-Eeccc-chH-HHHHHHHHHhcCcEEEe
Q 041887 27 IKVVDGSSLAVAVLTNS--IPDGTTQVV-IRGIL-TKV-AYATAFALCQKGIQVVT 77 (223)
Q Consensus 27 vrvVdGssLaaAvVlns--IP~gt~qV~-L~G~~-sKv-a~aiA~aLC~rgvqV~~ 77 (223)
+|+-||.+|.+=...-. -++...-|+ ..|=. +|- ...+|.+|.++|+-|++
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLr 69 (307)
T PRK13604 14 ICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIR 69 (307)
T ss_pred EEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEE
Confidence 67789999987766542 222223344 44544 654 67899999999999999
No 454
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.36 E-value=1.1e+02 Score=30.45 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCCceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 46 DGTTQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 46 ~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
.....|++.| ...+|+.+|..|-++|++|++ .++++-+.+++
T Consensus 398 ~~~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 398 DDKPQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred cccCCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 3456899999 568999999999999999999 55556665543
No 455
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=28.35 E-value=59 Score=27.53 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCcEEEecc
Q 041887 60 VAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 60 va~aiA~aLC~rgvqV~~~~ 79 (223)
+|-++|.+|.++|.+|++..
T Consensus 10 ~G~~~A~~La~~G~~V~l~e 29 (358)
T PF01266_consen 10 AGLSTAYELARRGHSVTLLE 29 (358)
T ss_dssp HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999943
No 456
>PLN02203 aldehyde dehydrogenase
Probab=28.21 E-value=61 Score=31.54 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=37.7
Q ss_pred cCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.=-+.+|.|..-+...++.. | .+.|++||++ .+|+.|+.+..++..+|++
T Consensus 162 lP~gvv~vv~g~~~~~~~l~~~-~--vd~v~fTGS~-~~G~~v~~~aa~~l~~v~l 213 (484)
T PLN02203 162 LDSKAVKVIEGGPAVGEQLLQH-K--WDKIFFTGSP-RVGRIIMTAAAKHLTPVAL 213 (484)
T ss_pred CCcCEEEEEeCCHHHHHHHHhC-C--CCEEEEECCH-HHHHHHHHHHHhcCCCEEE
Confidence 4666688998754444445554 4 7899999987 5778888877777788766
No 457
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=28.19 E-value=1.5e+02 Score=25.08 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|...=+|.+++..+..+|++|++ .+.+..+.+++
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 182 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA 182 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh
Confidence 46888898888999999999999999887 34566666655
No 458
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=28.14 E-value=1.7e+02 Score=24.55 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=30.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHH
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKL 86 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~l 86 (223)
+.|+++|..+=+|.+++..+..+|++|++ .+.++.+.+
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~ 207 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA 207 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 56888999988999999999999999887 344555554
No 459
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=27.93 E-value=96 Score=24.02 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=29.4
Q ss_pred eEEE--eccc-chHHHHHHHHHHhcCcEEEecch----hHHHHHHhh
Q 041887 50 QVVI--RGIL-TKVAYATAFALCQKGIQVVTLRE----DEHEKLIRS 89 (223)
Q Consensus 50 qV~L--~G~~-sKva~aiA~aLC~rgvqV~~~~~----~~y~~lk~~ 89 (223)
|+++ ||.. -.+-..+..+|-++||.|-++++ ..|..|.++
T Consensus 55 e~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 55 EVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRTYNILASE 101 (110)
T ss_dssp SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHHHHHHHHT
T ss_pred cEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHhC
Confidence 4444 7777 77889999999999999988444 567766665
No 460
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=27.71 E-value=1.6e+02 Score=25.33 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=31.5
Q ss_pred CceEEEecccchHHHHHHHHHHhc-CcEEEe--cchhHHHHHHh
Q 041887 48 TTQVVIRGILTKVAYATAFALCQK-GIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~r-gvqV~~--~~~~~y~~lk~ 88 (223)
.+.|++.|..+=+|.+++..+..+ |++|+. .+++..+.+++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~ 192 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE 192 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH
Confidence 467888999888999988877777 999887 34566666643
No 461
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.69 E-value=65 Score=25.41 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHhcCcEEEec
Q 041887 58 TKVAYATAFALCQKGIQVVTL 78 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~~ 78 (223)
|=++..+|.+|.++|.+|++.
T Consensus 13 Tt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 13 TTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp HHHHHHHHHHHHHTTS-EEEE
T ss_pred HHHHHHHHhcccccccccccc
Confidence 568999999999999999993
No 462
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=27.67 E-value=1.6e+02 Score=20.84 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhc-CcEEEe-cchhHHHHHHhhcCCc
Q 041887 59 KVAYATAFALCQK-GIQVVT-LREDEHEKLIRSFGGK 93 (223)
Q Consensus 59 Kva~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~~~~~ 93 (223)
+..+.-|...|++ |-..++ .+.+++..|+..+...
T Consensus 19 ~~~~~~A~~~C~~~~~~La~i~~~~e~~~i~~~~~~~ 55 (126)
T smart00034 19 KKTWADAQAFCQSLGAHLASIHSEAENDFVASLLKNS 55 (126)
T ss_pred ccCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHHhh
Confidence 3667888899987 444444 7889999998886654
No 463
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.66 E-value=95 Score=26.24 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh
Q 041887 58 TKVAYATAFALCQKGIQVVT--LREDEHEKLIRS 89 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~ 89 (223)
-.||-.+|..|+++|++|+- .+++.-+.|+..
T Consensus 9 GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g 42 (185)
T PF03721_consen 9 GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNG 42 (185)
T ss_dssp STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTT
T ss_pred CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhc
Confidence 47899999999999999999 677888888877
No 464
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=27.61 E-value=2.4e+02 Score=20.85 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHhc-CcEEEe-cchhHHHHHHhhcCC
Q 041887 58 TKVAYATAFALCQK-GIQVVT-LREDEHEKLIRSFGG 92 (223)
Q Consensus 58 sKva~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~~~~ 92 (223)
.+.-+.-|..-|++ |-..++ .+.++++.|...+..
T Consensus 8 ~~~~w~~A~~~C~~~g~~La~i~s~~e~~~i~~~~~~ 44 (115)
T cd03592 8 EKMTFNEAVKYCKSRGTDLVAIQNAEENALLNGFALK 44 (115)
T ss_pred CccCHHHHHHHHHHcCCeEeecCCHHHHHHHHHHHHh
Confidence 34567788999998 555555 888999988876543
No 465
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.53 E-value=1.6e+02 Score=27.27 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEecchhHHHHHHhhcCCcccccceeeeccceeeEEEecCCCCHHHhhc
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLREDEHEKLIRSFGGKSESKNLLVSRSYCQKIWLVGNGLTEEEQSK 123 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~~~y~~lk~~~~~~~~~~~L~~~~~~~~K~WlVGd~l~~~eQ~~ 123 (223)
|+-.-+.|++.|...=||+.+|..|.++|..|++.+... ..|++.+... + ++.+.-=.++ .+++ | +
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-~~l~~~~~~A---D-IVIsAvg~p~------~i~~-~--~ 219 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-KDMASYLKDA---D-VIVSAVGKPG------LVTK-D--V 219 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-hhHHHHHhhC---C-EEEECCCCCc------ccCH-H--H
Confidence 345667999999988899999999999999999832211 1232222222 2 2222100111 1333 2 3
Q ss_pred cCCCceeeeccccCCC--ccCCCCcccc
Q 041887 124 AERGTMFVPFSQFPPA--KKRRKDCTYH 149 (223)
Q Consensus 124 ApkGt~FipfsQfPp~--~~~RkDC~Y~ 149 (223)
..+|+.+|-.. +|+. -++-.|+-|.
T Consensus 220 vk~gavVIDvG-i~~~~~gkl~GDvd~~ 246 (286)
T PRK14175 220 VKEGAVIIDVG-NTPDENGKLKGDVDYD 246 (286)
T ss_pred cCCCcEEEEcC-CCcCCCCCeecCccHH
Confidence 57899999998 6663 3455777653
No 466
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=27.43 E-value=1.2e+02 Score=24.40 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=53.7
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh-cCCcccccceeeecccee-eEEEecCCCCHHHh-----
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS-FGGKSESKNLLVSRSYCQ-KIWLVGNGLTEEEQ----- 121 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~-~~~~~~~~~L~~~~~~~~-K~WlVGd~l~~~eQ----- 121 (223)
|=+-|- -.+|+++|..|-++|+.|.. .+++..+.+..+ +....+-..++. .+ -+++.=-.-+.-++
T Consensus 4 Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~----~~dvvi~~v~~~~~v~~v~~~~ 78 (163)
T PF03446_consen 4 IGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAE----QADVVILCVPDDDAVEAVLFGE 78 (163)
T ss_dssp EEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHH----HBSEEEE-SSSHHHHHHHHHCT
T ss_pred EEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhh----cccceEeecccchhhhhhhhhh
Confidence 334343 47999999999999999999 345667777665 211101111110 22 23432111111111
Q ss_pred ---hccCCCceeeeccccCCC------ccCC-CCcccccCCcccCC
Q 041887 122 ---SKAERGTMFVPFSQFPPA------KKRR-KDCTYHLTPAMATP 157 (223)
Q Consensus 122 ---~~ApkGt~FipfsQfPp~------~~~R-kDC~Y~~tPAM~~P 157 (223)
...++|+.||-+|-..|. .+++ +.+.|-..|=+.-|
T Consensus 79 ~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~ 124 (163)
T PF03446_consen 79 NILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGP 124 (163)
T ss_dssp THGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHH
T ss_pred HHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeeccc
Confidence 224799999999987775 2333 67788777755444
No 467
>PRK06141 ornithine cyclodeaminase; Validated
Probab=27.24 E-value=1.3e+02 Score=27.31 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=39.7
Q ss_pred eEEEecCCceee-------eeeeccC-CCCCceEEEecccchHHHHHHHHHHh-cC-cEEEec--chhHHHHHHhh
Q 041887 26 KIKVVDGSSLAV-------AVLTNSI-PDGTTQVVIRGILTKVAYATAFALCQ-KG-IQVVTL--REDEHEKLIRS 89 (223)
Q Consensus 26 kvrvVdGssLaa-------AvVlnsI-P~gt~qV~L~G~~sKva~aiA~aLC~-rg-vqV~~~--~~~~y~~lk~~ 89 (223)
-+=|+||+.||+ |+...-+ +++.+.|.+-|. -..|++++.+||. ++ .+|.+. +.+.-+.+..+
T Consensus 95 p~ai~d~~~lT~~RTaa~sala~~~La~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~ 169 (314)
T PRK06141 95 PLALVDGTELTARRTAAASALAASYLARKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAE 169 (314)
T ss_pred EEEEEcCcchhcchhHHHHHHHHHHhCCCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 344677777764 2222222 568888999884 6889999998887 66 557772 23444445444
No 468
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=27.13 E-value=56 Score=23.67 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=13.5
Q ss_pred HHHHhcCcEEEecchhHHHH
Q 041887 66 FALCQKGIQVVTLREDEHEK 85 (223)
Q Consensus 66 ~aLC~rgvqV~~~~~~~y~~ 85 (223)
.-||+.|++|.|++-+||.-
T Consensus 9 r~L~~aG~~v~iM~~~eF~~ 28 (55)
T PF05240_consen 9 RRLCQAGAQVSIMTYSEFQY 28 (55)
T ss_dssp HHHHHTT-EEEE--HHHHHH
T ss_pred HHHHHCCCeEEecCcHHHHH
Confidence 45889999999977777763
No 469
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=27.11 E-value=61 Score=27.97 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCcEEEecchhHHHHHHhh--cCCc
Q 041887 62 YATAFALCQKGIQVVTLREDEHEKLIRS--FGGK 93 (223)
Q Consensus 62 ~aiA~aLC~rgvqV~~~~~~~y~~lk~~--~~~~ 93 (223)
..=+.+|-..|+.|-....++|+.||++ +|.+
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e 73 (149)
T COG3019 40 DEWAQHMKANGFEVKVVETDDFLALKRRLGIPYE 73 (149)
T ss_pred HHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChh
Confidence 3457788899999999899999999998 6666
No 470
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=26.97 E-value=1.6e+02 Score=30.66 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.3
Q ss_pred eeEEEecCCCCHH
Q 041887 107 QKIWLVGNGLTEE 119 (223)
Q Consensus 107 ~K~WlVGd~l~~~ 119 (223)
.++=.||||+.+.
T Consensus 600 ~~VamVGDGINDA 612 (713)
T COG2217 600 RKVAMVGDGINDA 612 (713)
T ss_pred CEEEEEeCCchhH
Confidence 3678899999874
No 471
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=26.92 E-value=2e+02 Score=23.17 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=30.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
..|++.|...-+|.+++..+..+|++|++ .+.+..+.++.
T Consensus 110 ~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 151 (293)
T cd05195 110 ESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRE 151 (293)
T ss_pred CEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57778888899999999999999999988 23355555544
No 472
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=26.89 E-value=55 Score=27.41 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHhcCcEEEecchhHH
Q 041887 58 TKVAYATAFALCQKGIQVVTLREDEH 83 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~~~~~~y 83 (223)
-++|..++.+|-++|++|.|++.++.
T Consensus 29 l~ia~~l~~~L~~~G~~V~ltr~~d~ 54 (189)
T TIGR02883 29 LEIALKLKDYLQEQGALVVMTREDDS 54 (189)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 36788888889999999999665443
No 473
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=26.76 E-value=1.6e+02 Score=21.02 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHhcC---cEEEe---cchhHHHHHHhhcCC
Q 041887 58 TKVAYATAFALCQKG---IQVVT---LREDEHEKLIRSFGG 92 (223)
Q Consensus 58 sKva~aiA~aLC~rg---vqV~~---~~~~~y~~lk~~~~~ 92 (223)
-++|.|++..|.+.| .+|.+ -+.++-+.++++.+.
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~ 48 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV 48 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc
Confidence 589999999999999 99995 344666777777653
No 474
>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface
Probab=26.21 E-value=1.7e+02 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhc-CcEEEe-cchhHHHHHHhhcC
Q 041887 58 TKVAYATAFALCQK-GIQVVT-LREDEHEKLIRSFG 91 (223)
Q Consensus 58 sKva~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~~~ 91 (223)
+++.++-|...|+. |-..++ .+.+|.+.|...+.
T Consensus 8 ~~~sw~~A~~~C~~~g~~La~I~s~~E~~fv~~~~~ 43 (118)
T cd03603 8 GGMTWEAAQTLAESLGGHLVTINSAEENDWLLSNFG 43 (118)
T ss_pred CCcCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHhc
Confidence 46778889999997 554444 88899999887765
No 475
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=26.18 E-value=1.7e+02 Score=21.32 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhc-CcEEEe-cchhHHHHHHhhc
Q 041887 59 KVAYATAFALCQK-GIQVVT-LREDEHEKLIRSF 90 (223)
Q Consensus 59 Kva~aiA~aLC~r-gvqV~~-~~~~~y~~lk~~~ 90 (223)
+..+.-|...|+. |-..++ .+.++++.|+..+
T Consensus 19 ~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~ 52 (116)
T cd03593 19 KKTWNESKEACSSKNSSLLKIDDEEELEFLQSQI 52 (116)
T ss_pred CCCHHHHHHHHHhCCCcEEEECCHHHHHHHHHhc
Confidence 4567788899988 555554 7888999888776
No 476
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=26.09 E-value=1.1e+02 Score=28.55 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred ccccccc-cccceeeEeecCCceEEEec-CCceeeeeeeccCCCCCceEEEeccc-chHHHHHHHHHHhcCcEEEe--cc
Q 041887 5 NYQGEEL-NRYGGLFVHKNPELKIKVVD-GSSLAVAVLTNSIPDGTTQVVIRGIL-TKVAYATAFALCQKGIQVVT--LR 79 (223)
Q Consensus 5 LNq~e~L-N~~Gelyv~k~P~LkvrvVd-GssLaaAvVlnsIP~gt~qV~L~G~~-sKva~aiA~aLC~rgvqV~~--~~ 79 (223)
+.+.+.+ .+.|-.-|.-|..+|+.|+- |+-+. .|.. +|-+.+|+..|-+.|++|.- .-
T Consensus 139 ~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~-----------------~G~i~D~~~~~l~~~L~~~G~~v~~~~iv 201 (312)
T cd03522 139 VERAEALARDGPLLRVAPFRPLRVGLIVTGSEVY-----------------GGRIEDKFGPVLRARLAALGVELVEQVIV 201 (312)
T ss_pred HHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCC-----------------CCcEEEhHHHHHHHHHHHCCCEEEEEEEc
Confidence 3444444 44578888889889998875 54432 4545 88899999999999999876 34
Q ss_pred hhHHHHHHhhc
Q 041887 80 EDEHEKLIRSF 90 (223)
Q Consensus 80 ~~~y~~lk~~~ 90 (223)
.|+.+.|...+
T Consensus 202 ~Dd~~~I~~ai 212 (312)
T cd03522 202 PHDEAAIAAAI 212 (312)
T ss_pred CCCHHHHHHHH
Confidence 57777777663
No 477
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.04 E-value=51 Score=27.56 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=21.0
Q ss_pred ecccchHHHHHHHHHHhcCcEEEe
Q 041887 54 RGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
+|+|.|+|.+||..|-. |+.|.+
T Consensus 11 ~G~T~~iA~~Ia~~l~~-g~~v~~ 33 (177)
T PRK11104 11 DGQTRKIASYIASELKE-GIQCDV 33 (177)
T ss_pred CChHHHHHHHHHHHhCC-CCeEEE
Confidence 69999999999999988 988877
No 478
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=26.02 E-value=90 Score=25.12 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=23.9
Q ss_pred eEEEecccchHHHHHHHHHHhcCc--EEEe
Q 041887 50 QVVIRGILTKVAYATAFALCQKGI--QVVT 77 (223)
Q Consensus 50 qV~L~G~~sKva~aiA~aLC~rgv--qV~~ 77 (223)
+|-+.|+...||+++|..|+++++ ++.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L 31 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVL 31 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEE
Confidence 678899999999999999999975 4554
No 479
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.82 E-value=1e+02 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=24.2
Q ss_pred eEEEecccchHHHH-HHHHHHhcCcEEEecch
Q 041887 50 QVVIRGILTKVAYA-TAFALCQKGIQVVTLRE 80 (223)
Q Consensus 50 qV~L~G~~sKva~a-iA~aLC~rgvqV~~~~~ 80 (223)
.|++-|-- +-|.+ +|.+|.++|++|..++.
T Consensus 9 ~v~viG~G-~sG~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 9 RIHFVGIG-GIGMSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred EEEEEEEc-hhhHHHHHHHHHhCCCeEEEECC
Confidence 67777765 56778 79999999999999443
No 480
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=25.81 E-value=1.4e+02 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=26.3
Q ss_pred CceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 48 TTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 48 t~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
-|.|++.|..+|+ .+++..|.+-|.+|+.
T Consensus 314 GKrvai~Gdp~~~-i~LarfL~elGmevV~ 342 (457)
T CHL00073 314 GKSVFFMGDNLLE-ISLARFLIRCGMIVYE 342 (457)
T ss_pred CCEEEEECCCcHH-HHHHHHHHHCCCEEEE
Confidence 4678899999998 9999999999999887
No 481
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=25.65 E-value=1.1e+02 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.9
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecc--hhHHHHHHhh
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLR--EDEHEKLIRS 89 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~--~~~y~~lk~~ 89 (223)
|.+-|. --+|.++|.+|.+.|.+|.+.. .+.++.+++.
T Consensus 3 I~IiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~ 42 (304)
T PRK06522 3 IAILGA-GAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN 42 (304)
T ss_pred EEEECC-CHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc
Confidence 555554 4689999999999999998833 5677777765
No 482
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=25.51 E-value=96 Score=29.37 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHhcCcEEEe--cchhHHHHHHhh-cCCccccccee-eeccc-eeeE-EEe
Q 041887 57 LTKVAYATAFALCQKGIQVVT--LREDEHEKLIRS-FGGKSESKNLL-VSRSY-CQKI-WLV 112 (223)
Q Consensus 57 ~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~~-~~~~~~~~~L~-~~~~~-~~K~-WlV 112 (223)
+-|+|+.++.-|.++|.+|+. .+.+.-+.++.+ +... ..|- +++++ .+|+ |+.
T Consensus 8 LGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a---~sl~el~~~L~~pr~vWlM 66 (300)
T COG1023 8 LGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGA---ASLDELVAKLSAPRIVWLM 66 (300)
T ss_pred cchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccc---cCHHHHHHhcCCCcEEEEE
Confidence 468999999999999999999 667888888888 3333 2233 33344 3355 984
No 483
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=25.45 E-value=1.9e+02 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEe--cchhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVT--LREDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~--~~~~~y~~lk~ 88 (223)
+.|++.|..+=+|.+++..+..+|++|++ .+.++.+.++.
T Consensus 164 ~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~ 205 (334)
T PRK13771 164 ETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSK 205 (334)
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 36888999888999999999999999876 45566666643
No 484
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=25.39 E-value=52 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=22.1
Q ss_pred ecccchHHHHHHHHHH--hcCcEEEe
Q 041887 54 RGILTKVAYATAFALC--QKGIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC--~rgvqV~~ 77 (223)
+|+|.++|.+||..|. ..|++|.+
T Consensus 258 ~GnTe~mA~~ia~g~~~~~~g~~v~~ 283 (394)
T PRK11921 258 WNSTRRMAEAIAEGIKKANKDVTVKL 283 (394)
T ss_pred chHHHHHHHHHHHHHhhcCCCCeEEE
Confidence 8999999999999998 67999987
No 485
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=25.35 E-value=1.1e+02 Score=29.62 Aligned_cols=53 Identities=21% Similarity=0.120 Sum_probs=37.2
Q ss_pred cCCceEEEecCCceee-eeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAV-AVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaa-AvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|+=-+.+|+|+.-.+ ..++. .++.+-|++||++ ++|+.|+....++..+|++
T Consensus 201 lP~gvv~vv~g~~~~~~~~l~~--~~~v~~v~FTGS~-~~G~~i~~~aa~~l~~~~l 254 (482)
T PRK11241 201 IPAGVFNVVTGSAGAVGGELTS--NPLVRKLSFTGST-EIGRQLMEQCAKDIKKVSL 254 (482)
T ss_pred CCcccEEEEecCCchhHHHHhc--CCCCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 4766689999865432 22222 4588999999965 6788888877777777655
No 486
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.27 E-value=1.2e+02 Score=23.70 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred eEEEeccc---chHHHHHHHHHHhcCcEEEecch
Q 041887 50 QVVIRGIL---TKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 50 qV~L~G~~---sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
.|.+-|++ +|.|+.|..+|-++|++|.-.+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp 35 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNP 35 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEEST
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECC
Confidence 45667766 78999999999999999988443
No 487
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=25.12 E-value=73 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.7
Q ss_pred ceEEEecccc---h--HHHHHHHHHHhcCcEEEe
Q 041887 49 TQVVIRGILT---K--VAYATAFALCQKGIQVVT 77 (223)
Q Consensus 49 ~qV~L~G~~s---K--va~aiA~aLC~rgvqV~~ 77 (223)
+.+|++|..| | |+.+++.+|.+||++|..
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~ 37 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQP 37 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcce
Confidence 4688888765 5 788899999999998886
No 488
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.08 E-value=1.3e+02 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=31.1
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEecch--hHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTLRE--DEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~~--~~y~~lk~~ 89 (223)
+-|+.||+---+|++|.++|..-|.||+-..+ +...+|-++
T Consensus 8 ~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e 50 (245)
T KOG1207|consen 8 VIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE 50 (245)
T ss_pred eEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh
Confidence 35778998899999999999999999998333 344444444
No 489
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=25.06 E-value=1.1e+02 Score=29.18 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.5
Q ss_pred eeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEecc
Q 041887 39 VLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVTLR 79 (223)
Q Consensus 39 vVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~~~ 79 (223)
.+-.+.++-.-+|+..|.- =.|.+.|.+|.++|++|++..
T Consensus 30 ~~~~~~~~~~~DViIVGaG-PAG~~aA~~LA~~G~~VlllE 69 (450)
T PLN00093 30 AASKKLSGRKLRVAVIGGG-PAGACAAETLAKGGIETFLIE 69 (450)
T ss_pred CCCCCcCCCCCeEEEECCC-HHHHHHHHHHHhCCCcEEEEe
Confidence 3344444444499999986 346777888999999999943
No 490
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=25.00 E-value=1.4e+02 Score=25.22 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 44 IPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 44 IP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
|+-.-|.|.+-|...=||+-+|..|-++|..|++
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~ 65 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTI 65 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEE
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEe
Confidence 5667789999999999999999999999999999
No 491
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=24.95 E-value=48 Score=23.51 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCcEEEec
Q 041887 61 AYATAFALCQKGIQVVTL 78 (223)
Q Consensus 61 a~aiA~aLC~rgvqV~~~ 78 (223)
|-+.|.+|.++|++|++.
T Consensus 8 Gl~aA~~L~~~g~~v~v~ 25 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVF 25 (68)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 457889999999999993
No 492
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=24.91 E-value=62 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=28.5
Q ss_pred eeeccCCCCCceEEEeccc--chHHHHHHHHHHhcCcEEEe
Q 041887 39 VLTNSIPDGTTQVVIRGIL--TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 39 vVlnsIP~gt~qV~L~G~~--sKva~aiA~aLC~rgvqV~~ 77 (223)
.+++..|++.+=++|+|.- -==|.++|+.|.+.|++|.+
T Consensus 37 ~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 37 AVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFL 77 (205)
T ss_pred HHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCEEEE
Confidence 3445567665555666544 45688999999999999998
No 493
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=24.85 E-value=1.1e+02 Score=28.76 Aligned_cols=53 Identities=23% Similarity=0.091 Sum_probs=36.7
Q ss_pred cCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|+=-+.+|+|.+-++..++. .++++-|++||+. .+|+.|+.+..++-.+|.+
T Consensus 171 lP~g~~~~v~g~~~~~~~L~~--~~~v~~V~fTGs~-~~g~~v~~~a~~~~~~v~l 223 (452)
T cd07102 171 LPEGVFQVLHLSHETSAALIA--DPRIDHVSFTGSV-AGGRAIQRAAAGRFIKVGL 223 (452)
T ss_pred CCcCcEEEEeCCchhHHHHhc--CCCCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 476668999987622233333 2678899999975 5677777777777777765
No 494
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=24.83 E-value=99 Score=29.15 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=37.0
Q ss_pred cCCceEEEecCCceeeeeeeccCCCCCceEEEecccchHHHHHHHHHHhcCcEEEe
Q 041887 22 NPELKIKVVDGSSLAVAVLTNSIPDGTTQVVIRGILTKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 22 ~P~LkvrvVdGssLaaAvVlnsIP~gt~qV~L~G~~sKva~aiA~aLC~rgvqV~~ 77 (223)
.|.=-+.+|.|..-..+-.|-+- ++.+-|++||++ .+|+.|+.+..++..+|++
T Consensus 171 lP~~~~~~v~g~~~~~~~~L~~~-~~vd~v~ftGs~-~~g~~v~~~aa~~l~~~~l 224 (457)
T cd07108 171 LPAGVLNVITGYGEECGAALVDH-PDVDKVTFTGST-EVGKIIYRAAADRLIPVSL 224 (457)
T ss_pred CCcCcEEEEeCCchHHHHHHhcC-CCcCEEEEECcH-HHHHHHHHHHhccCCeEEE
Confidence 36666888988543322222222 378899999965 6788888888877777765
No 495
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=24.81 E-value=69 Score=31.04 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHhcCcEEEe
Q 041887 58 TKVAYATAFALCQKGIQVVT 77 (223)
Q Consensus 58 sKva~aiA~aLC~rgvqV~~ 77 (223)
||+|+-+|. +..+|+||++
T Consensus 279 s~lg~llA~-~a~~gvqvVv 297 (374)
T COG4938 279 SKLGDLLAE-LAARGVQVVV 297 (374)
T ss_pred HHHHHHHHH-HHhcCcEEEE
Confidence 899999998 7899999999
No 496
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=24.79 E-value=63 Score=27.32 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=22.1
Q ss_pred ecccchHHHHHHHHHHhc-CcEEEe
Q 041887 54 RGILTKVAYATAFALCQK-GIQVVT 77 (223)
Q Consensus 54 ~G~~sKva~aiA~aLC~r-gvqV~~ 77 (223)
+|++.|+|.+|+..+.+. |++|.+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~ 35 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVV 35 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 789999999999999886 999988
No 497
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=24.74 E-value=4e+02 Score=23.58 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=29.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCcEEEec-----chhHHHHHHh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGIQVVTL-----REDEHEKLIR 88 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgvqV~~~-----~~~~y~~lk~ 88 (223)
+.|++.|. .-||...+..+-.+|++|+.. ++++.+.+++
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 47888896 899999998888899998873 3456665553
No 498
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=24.65 E-value=61 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEecccchHHHHHHHHHHhcCcEEEecch
Q 041887 51 VVIRGILTKVAYATAFALCQKGIQVVTLRE 80 (223)
Q Consensus 51 V~L~G~~sKva~aiA~aLC~rgvqV~~~~~ 80 (223)
|+.-|+= =+|.++|..|.++|.+|++..+
T Consensus 3 vvIIGaG-i~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 3 VIVVGAG-IMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EEEECCC-HHHHHHHHHHHHCCCeEEEEec
Confidence 4444432 2588999999999999999443
No 499
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=24.62 E-value=1.9e+02 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=28.9
Q ss_pred ceEEEecccchHHHHHHHHHHhcCc-EEEecch--hHHHHHHhh
Q 041887 49 TQVVIRGILTKVAYATAFALCQKGI-QVVTLRE--DEHEKLIRS 89 (223)
Q Consensus 49 ~qV~L~G~~sKva~aiA~aLC~rgv-qV~~~~~--~~y~~lk~~ 89 (223)
+.|++-|+- -+|+|+|.+|.+.|+ +|.+.++ ++-+.|.+.
T Consensus 128 k~vlIlGaG-Gaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 128 ERVVQLGAG-GAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred CEEEEECCc-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 678888875 589999999999998 6777433 444444443
No 500
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=24.56 E-value=79 Score=26.16 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=32.1
Q ss_pred ecCCceEEEecCC----------ceeeeeeeccC-CC-CCceEEEecccchHHHHHHHHHHhcCc
Q 041887 21 KNPELKIKVVDGS----------SLAVAVLTNSI-PD-GTTQVVIRGILTKVAYATAFALCQKGI 73 (223)
Q Consensus 21 k~P~LkvrvVdGs----------sLaaAvVlnsI-P~-gt~qV~L~G~~sKva~aiA~aLC~rgv 73 (223)
++|++++.++-.+ .-..+.+++++ +. ...+|+++|...=+ .++...|.+.|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~m~-~~~~~~l~~~gv 221 (231)
T cd06215 158 RHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLKERTVFVCGPAGFM-KAVKSLLAELGF 221 (231)
T ss_pred HCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCccCCeEEEECCHHHH-HHHHHHHHHcCC
Confidence 4677787766432 11122234443 43 23589999997544 788888888887
Done!