Query 041888
Match_columns 326
No_of_seqs 117 out of 223
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 20:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rg8_A Programmed cell death p 66.0 5.2 0.00018 33.7 3.8 47 268-316 5-51 (165)
2 2nsz_A Programmed cell death p 65.5 4.3 0.00015 32.7 3.1 44 268-313 2-45 (129)
3 2ion_A PDCD4, programmed cell 65.0 4.5 0.00015 33.7 3.2 45 267-313 3-47 (152)
4 2zzd_C Thiocyanate hydrolase s 42.7 19 0.00066 33.4 3.8 48 268-316 23-74 (243)
5 1ugp_A NitrIle hydratase alpha 39.8 27 0.00091 31.7 4.1 50 267-316 14-64 (203)
6 3bqs_A Uncharacterized protein 38.3 58 0.002 25.5 5.4 43 274-317 14-58 (93)
7 3a8g_A NitrIle hydratase subun 37.5 28 0.00096 31.6 3.9 51 266-316 16-67 (207)
8 3eiq_C Programmed cell death p 32.3 34 0.0012 32.3 3.8 46 270-317 51-96 (358)
9 3hht_B NitrIle hydratase beta 30.1 61 0.0021 29.3 4.9 34 267-300 71-104 (229)
10 1ug3_A EIF4GI, eukaryotic prot 27.8 46 0.0016 30.2 3.7 45 268-314 6-50 (339)
11 2zu6_B Programmed cell death p 27.4 44 0.0015 30.7 3.5 47 267-315 160-206 (307)
12 2xwv_A Sialic acid-binding per 26.2 26 0.00088 31.1 1.7 40 269-308 272-311 (312)
13 2vqe_U S31, 30S ribosomal prot 23.9 35 0.0012 22.4 1.5 19 6-24 7-25 (27)
14 3mab_A Uncharacterized protein 23.6 71 0.0024 25.1 3.6 42 274-315 14-59 (93)
15 2lja_A Putative thiol-disulfid 23.5 49 0.0017 24.4 2.6 25 284-308 127-151 (152)
16 2c0s_A Conserved domain protei 23.4 1.2E+02 0.0041 22.5 4.6 34 270-303 11-50 (64)
17 3eiq_C Programmed cell death p 22.4 82 0.0028 29.7 4.4 46 265-312 209-254 (358)
18 2o7g_A Probable RNA polymerase 22.2 72 0.0025 23.3 3.2 44 278-321 13-65 (112)
19 2bzb_A Conserved domain protei 20.8 97 0.0033 22.8 3.6 35 270-304 11-51 (62)
20 3a7m_A Flagellar protein FLIT; 20.4 2E+02 0.0068 23.3 5.8 53 269-321 11-71 (122)
21 4dhi_B Ubiquitin thioesterase 20.1 81 0.0028 29.3 3.8 42 269-310 132-192 (284)
No 1
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=65.98 E-value=5.2 Score=33.68 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 041888 268 PYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVFTE 316 (326)
Q Consensus 268 PY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF~D 316 (326)
+-++|++.+..+|.|- +.-.|++|.+.|.=.||.+.+|..+|...+.
T Consensus 5 s~ee~~kk~~~ii~EY--f~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 51 (165)
T ss_dssp SHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 5678999999999763 2345889999999999999999988876654
No 2
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.50 E-value=4.3 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHH
Q 041888 268 PYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEV 313 (326)
Q Consensus 268 PY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~A 313 (326)
|-++|++.|..+|.|-- .-.|++|-.+|.=.||.+.+|..+|.-
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~ 45 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYE 45 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHH
Confidence 67899999999987632 346899999999999988877755543
No 3
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.02 E-value=4.5 Score=33.70 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHH
Q 041888 267 DPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEV 313 (326)
Q Consensus 267 DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~A 313 (326)
.|-++|++.|..+|.|-- .-.|++|-++|.-.||.+.+|..+|..
T Consensus 3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~ 47 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYE 47 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHH
Confidence 678899999999997632 336899999999999988887666554
No 4
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=42.75 E-value=19 Score=33.39 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=37.0
Q ss_pred hHHHHHH---HHHHHHHhcCCCChhHHHHHHHHHHhcCCCCch-hhHHHHHHH
Q 041888 268 PYNDFRT---SMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHH-RIILEVFTE 316 (326)
Q Consensus 268 PY~DFR~---SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH-~~Iv~AF~D 316 (326)
+..+|-. -+++++.|+|+.+.++|++++..|-.. ++..= +++.+|.+|
T Consensus 23 ~~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~-gP~~GArvVArAW~D 74 (243)
T 2zzd_C 23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTL-GPLPAARLVAKAWLD 74 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHC-CSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc-CCCCcceEEEeecCC
Confidence 4455655 899999999999999999999999999 44444 445555544
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=39.78 E-value=27 Score=31.73 Aligned_cols=50 Identities=10% Similarity=0.323 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCCCchhhHHHHHHH
Q 041888 267 DPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSL-NSHHHHRIILEVFTE 316 (326)
Q Consensus 267 DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsL-Nsk~hH~~Iv~AF~D 316 (326)
++..++-.-+++++.++|+.+.+++++++..|-.. .+..--++|.+|.+|
T Consensus 14 ~~~~~r~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D 64 (203)
T 1ugp_A 14 KEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC
Confidence 45778889999999999999999999999999988 444444555666554
No 6
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=38.33 E-value=58 Score=25.46 Aligned_cols=43 Identities=9% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCChhHHHHH--HHHHHhcCCCCchhhHHHHHHHH
Q 041888 274 TSMVEMIVEKQIFAAKDLEQL--LQCFLSLNSHHHHRIILEVFTEI 317 (326)
Q Consensus 274 ~SMvEMI~ekgi~d~~dLEEL--L~CYLsLNsk~hH~~Iv~AF~DL 317 (326)
..|++|+..-||.+.++|.++ .++|+.|-....-..+ .+|-.|
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL 58 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYAL 58 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHH
Confidence 468999999999999999887 7899999877544444 555544
No 7
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=37.46 E-value=28 Score=31.63 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCC-chhhHHHHHHH
Q 041888 266 SDPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHH-HHRIILEVFTE 316 (326)
Q Consensus 266 ~DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~-hH~~Iv~AF~D 316 (326)
.++..++-.-+++++.++|+.+.+++++++..|-..=++. =-++|-+|.+|
T Consensus 16 ~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 16 QAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 4567899999999999999999999999999999883333 34455555544
No 8
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.28 E-value=34 Score=32.32 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 041888 270 NDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVFTEI 317 (326)
Q Consensus 270 ~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF~DL 317 (326)
++|++-...+|.|- +.-.+++|.+.|.-.||.+.+|..+|...+.+
T Consensus 51 ee~~k~~~~ii~EY--f~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 79999988888764 34568999999999999999998888766543
No 9
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=30.07 E-value=61 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 041888 267 DPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLS 300 (326)
Q Consensus 267 DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLs 300 (326)
+=|+-....|+.|++++|+.+.++|.+..+-||.
T Consensus 71 ~YYe~WL~ale~lLvekGvit~~EL~~r~~~~~~ 104 (229)
T 3hht_B 71 SYYGHWIATVAYNLVDTGVLDEKELDERTEVFSK 104 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 3477889999999999999999999999999996
No 10
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.75 E-value=46 Score=30.22 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHH
Q 041888 268 PYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVF 314 (326)
Q Consensus 268 PY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF 314 (326)
+-++|++-|..+|.|- ..-.|++|.+.|.-.||.+.+|..+|...
T Consensus 6 s~ee~~k~~~~ll~Ey--~~~~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEY--LHLNDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 4567888888888752 12247889999999999996666555433
No 11
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.39 E-value=44 Score=30.72 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHH
Q 041888 267 DPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVFT 315 (326)
Q Consensus 267 DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF~ 315 (326)
-|-++|++-|.++|.|-- .-.|++|-.+|.-.||.+.+|..+|...+
T Consensus 160 ~~~eelkkki~~lL~EY~--~~~D~~EA~~ci~EL~~p~f~~e~V~~ai 206 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAI 206 (307)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 467899999999998742 23589999999999998888876665443
No 12
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=26.22 E-value=26 Score=31.12 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchh
Q 041888 269 YNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHR 308 (326)
Q Consensus 269 Y~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~ 308 (326)
...|++.+..+..+-.-.....-++||.-|+..|+.+||.
T Consensus 272 ~~~~~~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhCcccccC
Confidence 4779988888775421111235678999999999999885
No 13
>2vqe_U S31, 30S ribosomal protein THX; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: j.9.1.1 PDB: 1xmo_V* 1xnq_V* 1xnr_V* 1yl4_X 2b64_U* 2b9m_U* 2b9o_U* 2hgi_X 2hgp_X 2hgr_X 2hhh_U* 1xmq_V* 2j02_U* 2jl5_U 2jl7_U 2ow8_v* 2qnh_v* 2uu9_U* 2uua_U* 2uub_U* ...
Probab=23.91 E-value=35 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=15.0
Q ss_pred hhhhhhhhhcccCccccCC
Q 041888 6 KLRISRLFRSSFGSCRSRN 24 (326)
Q Consensus 6 k~risr~fr~sf~scr~r~ 24 (326)
|.+--.+|+.|||-||++.
T Consensus 7 kT~rGK~~~gs~G~~Rp~k 25 (27)
T 2vqe_U 7 RTRRGKIWRGTYGKYRPRK 25 (27)
T ss_dssp TSHHHHHHTTCCBTTBCCC
T ss_pred cccccceeccCccccccCC
Confidence 3445568999999999875
No 14
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=23.64 E-value=71 Score=25.05 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCChhHHHHH--HHHHHhc--CCCCchhhHHHHHH
Q 041888 274 TSMVEMIVEKQIFAAKDLEQL--LQCFLSL--NSHHHHRIILEVFT 315 (326)
Q Consensus 274 ~SMvEMI~ekgi~d~~dLEEL--L~CYLsL--Nsk~hH~~Iv~AF~ 315 (326)
..|++|+.+-||.+.++|+++ .++|+.| .....|-.++=|++
T Consensus 14 ~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL~ 59 (93)
T 3mab_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALE 59 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 358999999999999999987 7889888 33444433333333
No 15
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=23.52 E-value=49 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCchh
Q 041888 284 QIFAAKDLEQLLQCFLSLNSHHHHR 308 (326)
Q Consensus 284 gi~d~~dLEELL~CYLsLNsk~hH~ 308 (326)
|..+.++|+++|.-++..|...||.
T Consensus 127 g~~~~~~l~~~l~~~~~~~~~~~~~ 151 (152)
T 2lja_A 127 TRPSDPKTAEKFNELLGLEGHHHHH 151 (152)
T ss_dssp CCTTCHHHHHHHHHHHTCCSSSSSC
T ss_pred CCCCHHHHHHHHHHHhccccccccC
Confidence 3446789999999999999988875
No 16
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.35 E-value=1.2e+02 Score=22.49 Aligned_cols=34 Identities=12% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCC
Q 041888 270 NDFRTSMVEMIVEKQIFAA------KDLEQLLQCFLSLNS 303 (326)
Q Consensus 270 ~DFR~SMvEMI~ekgi~d~------~dLEELL~CYLsLNs 303 (326)
+.-|+-|.+.+...|+.++ -+|-.||..|..+..
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999887 479999999987653
No 17
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.39 E-value=82 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHH
Q 041888 265 SSDPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILE 312 (326)
Q Consensus 265 S~DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~ 312 (326)
...|-+++++-|...|.|- ....|++|-.+|.-.||.+.+|..+|.
T Consensus 209 ~~~~veelkkki~~lL~EY--~~s~D~~EA~~ci~EL~~p~fhhe~V~ 254 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEY--LLSGDISEAEHCLKELEVPHFHHELVY 254 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHCCTTCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHh--ccCCCHHHHHHHHHHccCCcchHHHHH
Confidence 4468999999999888764 245689999999999999887766554
No 18
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=22.19 E-value=72 Score=23.28 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHhcCCCChhHHHHHHHHHH-------h--cCCCCchhhHHHHHHHHHHHh
Q 041888 278 EMIVEKQIFAAKDLEQLLQCFL-------S--LNSHHHHRIILEVFTEIWEAL 321 (326)
Q Consensus 278 EMI~ekgi~d~~dLEELL~CYL-------s--LNsk~hH~~Iv~AF~DLw~~L 321 (326)
++|....-.+.+.+++|+..|- . .|....-.++-+||..+|..+
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~aeD~vQe~fl~~~~~~ 65 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3444333446666666654332 1 344455677788999999764
No 19
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.78 E-value=97 Score=22.85 Aligned_cols=35 Identities=11% Similarity=0.461 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCCC
Q 041888 270 NDFRTSMVEMIVEKQIFAA------KDLEQLLQCFLSLNSH 304 (326)
Q Consensus 270 ~DFR~SMvEMI~ekgi~d~------~dLEELL~CYLsLNsk 304 (326)
+.=|+-|.+.+...|+.++ -+|-.||..|..+...
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 11 ENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457889999999998876 4799999999998754
No 20
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=20.37 E-value=2e+02 Score=23.32 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc--------CCCCchhhHHHHHHHHHHHh
Q 041888 269 YNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSL--------NSHHHHRIILEVFTEIWEAL 321 (326)
Q Consensus 269 Y~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsL--------Nsk~hH~~Iv~AF~DLw~~L 321 (326)
|..-..--.+|++.....+||+|-+|=.-|+.+ -+......+.+.+.++...+
T Consensus 11 Yq~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~I 71 (122)
T 3a7m_A 11 WQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQT 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 666677778999999999999999999999975 23445666666677766554
No 21
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=20.09 E-value=81 Score=29.33 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHH--hcCCCChhHHHH-----------------HHHHHHhcCCCCchhhH
Q 041888 269 YNDFRTSMVEMIV--EKQIFAAKDLEQ-----------------LLQCFLSLNSHHHHRII 310 (326)
Q Consensus 269 Y~DFR~SMvEMI~--ekgi~d~~dLEE-----------------LL~CYLsLNsk~hH~~I 310 (326)
|+||.+..+|+|. +.+....+.|.+ |-..||..|+..+=++|
T Consensus 132 ~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi 192 (284)
T 4dhi_B 132 CTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFI 192 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhc
Confidence 6899999988887 345444443433 66677777777777777
Done!