Query 041888
Match_columns 326
No_of_seqs 117 out of 223
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 20:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 62.1 2.5 0.00018 32.3 3.1 46 268-315 2-47 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 44.1 8.3 0.0006 30.7 3.5 45 270-316 7-51 (193)
3 d1ugpa_ d.149.1.1 (A:) Cobalt- 39.7 9.3 0.00068 32.5 3.3 44 273-316 20-64 (203)
4 d2qdya1 d.149.1.1 (A:10-206) I 38.1 13 0.00096 31.4 4.0 52 265-316 6-58 (197)
5 d1v29a_ d.149.1.1 (A:) Cobalt- 37.8 8.7 0.00063 32.7 2.8 50 267-316 10-63 (203)
6 d1v29b_ b.34.4.4 (B:) Cobalt-c 26.4 44 0.0032 27.9 5.4 41 266-306 70-110 (229)
7 d1or7a2 a.177.1.1 (A:-1-111) S 17.3 69 0.005 22.1 4.1 44 278-321 11-63 (113)
8 d1a8oa_ a.28.3.1 (A:) HIV caps 16.8 87 0.0063 21.4 4.4 23 264-286 6-28 (70)
9 d2qdyb1 b.34.4.4 (B:1-211) Iro 16.0 64 0.0046 26.6 4.1 31 265-295 69-99 (211)
10 d1qrjb1 a.28.3.1 (B:131-214) H 15.8 67 0.0049 23.1 3.7 49 264-313 9-57 (84)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=62.14 E-value=2.5 Score=32.26 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHH
Q 041888 268 PYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVFT 315 (326)
Q Consensus 268 PY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF~ 315 (326)
|-..+++.|..||.|- +.-.|++|.+.|.-.||.+++|..+|...+
T Consensus 2 pv~~l~kk~~~ll~EY--~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i 47 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEY--LLSGDISEAEHCLKELEVPHFHHELVYEAI 47 (129)
T ss_dssp CCCHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 4456788899998764 245788999999999999887776665443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.08 E-value=8.3 Score=30.73 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 041888 270 NDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEVFTE 316 (326)
Q Consensus 270 ~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~AF~D 316 (326)
+||++-+..+|.|- .+-.|+.|.+.|.=.||.+.+|..+|...+.
T Consensus 7 ee~~kk~~~il~Ey--~~~~D~~Ea~~~l~el~~p~~~~~~V~~~i~ 51 (193)
T d1ug3a1 7 EELEKKSKAIIEEY--LHLNDMKEAVQCVQELASPSLLFIFVRHGVE 51 (193)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 68888888888762 1234788999999999998888777665543
No 3
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=39.75 E-value=9.3 Score=32.50 Aligned_cols=44 Identities=11% Similarity=0.430 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q 041888 273 RTSMVEMIVEKQIFAAKDLEQLLQCFLS-LNSHHHHRIILEVFTE 316 (326)
Q Consensus 273 R~SMvEMI~ekgi~d~~dLEELL~CYLs-LNsk~hH~~Iv~AF~D 316 (326)
-+.+++.+.|+|+.+.+++.+++..|-. +.+..==++|-+|.+|
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D 64 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC
Confidence 3567788889999999999999999997 5665556677777665
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=38.07 E-value=13 Score=31.38 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCCCchhhHHHHHHH
Q 041888 265 SSDPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSL-NSHHHHRIILEVFTE 316 (326)
Q Consensus 265 S~DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsL-Nsk~hH~~Iv~AF~D 316 (326)
..+|..+=-+.+++++.|+|+.+.+++.+++..|-.- .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 4578888889999999999999999999999999765 333334456666554
No 5
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=37.82 E-value=8.7 Score=32.67 Aligned_cols=50 Identities=12% Similarity=0.445 Sum_probs=38.6
Q ss_pred ChHHHH---HHHHHHHHHhcCCCChhHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q 041888 267 DPYNDF---RTSMVEMIVEKQIFAAKDLEQLLQCFLS-LNSHHHHRIILEVFTE 316 (326)
Q Consensus 267 DPY~DF---R~SMvEMI~ekgi~d~~dLEELL~CYLs-LNsk~hH~~Iv~AF~D 316 (326)
.|..|| -+.+++.+.|+|+.+.++|.+++..|-. +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466664 4577888889999999999999999997 4666666666666554
No 6
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=26.36 E-value=44 Score=27.92 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCc
Q 041888 266 SDPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHH 306 (326)
Q Consensus 266 ~DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~h 306 (326)
.+=|+-+...|+.+++++|+.+.+||++-.+.++..-....
T Consensus 70 ~sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~ 110 (229)
T d1v29b_ 70 SSYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKI 110 (229)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCcccc
Confidence 35688899999999999999999999999999988644443
No 7
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=17.33 E-value=69 Score=22.07 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHH---------hcCCCCchhhHHHHHHHHHHHh
Q 041888 278 EMIVEKQIFAAKDLEQLLQCFL---------SLNSHHHHRIILEVFTEIWEAL 321 (326)
Q Consensus 278 EMI~ekgi~d~~dLEELL~CYL---------sLNsk~hH~~Iv~AF~DLw~~L 321 (326)
|+|..-.-.+.+.+++|+..|- -++..+--.++-++|..||..+
T Consensus 11 ~Li~~~~~Gd~~Af~~l~~~y~~~l~~~~~~~~~~~daeDl~Qe~~l~~~~~~ 63 (113)
T d1or7a2 11 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRAL 63 (113)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3444333446667777766552 2344444456667777777764
No 8
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=16.83 E-value=87 Score=21.40 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=18.3
Q ss_pred ecCChHHHHHHHHHHHHHhcCCC
Q 041888 264 SSSDPYNDFRTSMVEMIVEKQIF 286 (326)
Q Consensus 264 ~S~DPY~DFR~SMvEMI~ekgi~ 286 (326)
...+||.||.....+-++.....
T Consensus 6 gpkEpf~dfV~Rl~~~~~~~~~~ 28 (70)
T d1a8oa_ 6 GPKEPFRDYVDRFYKTLRAEQAS 28 (70)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhhcCC
Confidence 45789999999999999655443
No 9
>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=15.97 E-value=64 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 041888 265 SSDPYNDFRTSMVEMIVEKQIFAAKDLEQLL 295 (326)
Q Consensus 265 S~DPY~DFR~SMvEMI~ekgi~d~~dLEELL 295 (326)
+.+=|+-....|+.+++++|+.+.+||++..
T Consensus 69 ~~sYYe~Wl~ale~lLvekG~it~~EL~~~~ 99 (211)
T d2qdyb1 69 MTPYYERYVIGVATLMVEKGILTQDELESLA 99 (211)
T ss_dssp HSCHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 4466888999999999999999999999864
No 10
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=15.84 E-value=67 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=29.1
Q ss_pred ecCChHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHH
Q 041888 264 SSSDPYNDFRTSMVEMIVEKQIFAAKDLEQLLQCFLSLNSHHHHRIILEV 313 (326)
Q Consensus 264 ~S~DPY~DFR~SMvEMI~ekgi~d~~dLEELL~CYLsLNsk~hH~~Iv~A 313 (326)
-..+||.||.+-..+-|+.... +.+--.-|+..-+-=|+..-=+.|+++
T Consensus 9 GpkEpf~dfVdRl~~a~~~~~~-~~~~k~~l~~~L~~qNANpdCk~~lr~ 57 (84)
T d1qrjb1 9 GLEEPYHAFVERLNIALDNGLP-EGTPKDPILRSLAYSNANKECQKLLQA 57 (84)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCC-TTSCCHHHHHHHHTTTBCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 4578999999999999965443 322222244444445555444455544
Done!