Query 041890
Match_columns 375
No_of_seqs 165 out of 1025
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 20:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041890.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041890hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 95.4 0.021 1.5E-06 39.8 6.4 43 13-55 28-70 (71)
2 d1q1va_ a.159.4.1 (A:) DEK C-t 26.1 83 0.006 20.6 6.1 39 59-97 10-51 (70)
3 d1bsma2 d.44.1.1 (A:87-201) Ca 16.6 1.1E+02 0.0082 21.8 5.4 10 172-181 67-76 (115)
4 d2gyc31 a.108.1.1 (3:2-48) Rib 15.4 34 0.0025 20.6 1.6 19 79-97 15-33 (47)
5 d1ansa_ g.11.1.1 (A:) Neurotox 15.0 19 0.0013 18.7 0.2 8 21-28 6-13 (27)
6 d1no1a_ a.179.1.1 (A:) Repliso 12.6 94 0.0069 19.1 3.2 11 223-233 9-19 (67)
7 d1rfma_ c.122.1.1 (A:) L-sulfo 12.2 3.2E+02 0.024 23.1 8.3 59 84-145 10-72 (344)
8 d1uera2 d.44.1.1 (A:85-191) Ca 10.7 2.5E+02 0.018 19.4 7.0 10 172-181 65-74 (107)
9 d1prtc2 d.169.1.2 (C:4-89) Per 10.5 52 0.0038 21.7 1.5 14 179-192 55-68 (86)
10 d1mnga2 d.44.1.1 (A:93-203) Mn 10.5 2.6E+02 0.019 19.4 7.1 10 172-181 66-75 (111)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.38 E-value=0.021 Score=39.79 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=36.5
Q ss_pred cCeEEEEEeecCCCceEEEEEEecCCCeEEEEEeCCCcccCCC
Q 041890 13 TSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRR 55 (375)
Q Consensus 13 ~~~r~~~~C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~~~ 55 (375)
..-|-.++|+..+|+++-.+-+...++...++++.++|||+..
T Consensus 28 ~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P 70 (71)
T d1wj2a_ 28 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 70 (71)
T ss_dssp SSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence 3457779999999999999998887777788899999999764
No 2
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.08 E-value=83 Score=20.61 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=32.9
Q ss_pred cccchhhHHHHHhhhhhc-C-CCCCHHHHHHHHHHHh-CCCh
Q 041890 59 FPLRTKWNAEKFLHLWVQ-N-PNIDFHILRYEIETCS-GFKY 97 (375)
Q Consensus 59 ~~~ss~~ia~~~~~~l~~-~-~~~~~~~i~~~l~~~~-gvs~ 97 (375)
+..|-..|...++++++. + .+++.+.|...|...| |++.
T Consensus 10 ~~ptd~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL 51 (70)
T d1q1va_ 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDL 51 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCC
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCc
Confidence 467888899999999986 3 7799999999999999 7555
No 3
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]}
Probab=16.60 E-value=1.1e+02 Score=21.83 Aligned_cols=10 Identities=20% Similarity=0.089 Sum_probs=6.1
Q ss_pred cCceEEEEee
Q 041890 172 TCRRLVIVDG 181 (375)
Q Consensus 172 ~~r~vi~lD~ 181 (375)
...|+|+||.
T Consensus 67 ~~~PlL~iDv 76 (115)
T d1bsma2 67 GSIPLLQLDM 76 (115)
T ss_dssp TCEEEEEEEC
T ss_pred CCeeEEEeec
Confidence 3556676664
No 4
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=15.44 E-value=34 Score=20.63 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHhCCCh
Q 041890 79 NIDFHILRYEIETCSGFKY 97 (375)
Q Consensus 79 ~~~~~~i~~~l~~~~gvs~ 97 (375)
-+..-+|...+.++||+|-
T Consensus 15 VmdvveLi~amEEKFGVsa 33 (47)
T d2gyc31 15 VMDVVELISAMEEKFGVSA 33 (47)
T ss_dssp HHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHHHHHhCcch
Confidence 3445677778899999875
No 5
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=14.99 E-value=19 Score=18.67 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.8
Q ss_pred eecCCCce
Q 041890 21 CSDLMCDW 28 (375)
Q Consensus 21 C~~~~C~w 28 (375)
|...||||
T Consensus 6 cywggcpw 13 (27)
T d1ansa_ 6 CYWGGCPW 13 (27)
T ss_dssp STTTTCSS
T ss_pred ccccCCcc
Confidence 55578888
No 6
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=12.60 E-value=94 Score=19.14 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=7.6
Q ss_pred HHHHHhhhcCC
Q 041890 223 VDEAVSKSLPY 233 (375)
Q Consensus 223 l~~Ai~~vfP~ 233 (375)
|.+|+++.+|+
T Consensus 9 ilkavsefypg 19 (67)
T d1no1a_ 9 ILKAVSEFYPG 19 (67)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHCCC
Confidence 56677777775
No 7
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.24 E-value=3.2e+02 Score=23.05 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCh-hhhH-HHHHHHHhHHHhhCChHHHHHHHHHHHHHHhh--cCCCcEEEEEee
Q 041890 84 ILRYEIETCSGFKY-PTWK-LEAIDKTAKLWLRTDHNYGYERLFQYKNEMLK--VNSNNIVIIQTK 145 (375)
Q Consensus 84 ~i~~~l~~~~gvs~-~~~r-ak~~a~~~~~~~~g~~~~~y~~L~~yl~~l~~--~Npgs~~~v~~~ 145 (375)
++...+....|++- .+-. |...+.. .++|-..-...+|+.|++.|+. .||.-...+..+
T Consensus 10 ~~~~~~l~~~G~~~~~A~~vA~~lv~a---dl~G~~SHG~~rl~~Y~~~l~~G~i~~~~~~~v~~~ 72 (344)
T d1rfma_ 10 KLIIDVLKKFGVPEEDAKITADVFVDA---DLKGFTSHGIGRFPQYITALKLGNINPKPDIKIVKE 72 (344)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH---HHHTCGGGSGGGHHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH---HcCCCccccHHHHHHHHHHHHcCCcCCCCceEEEec
Confidence 33444555566666 4433 3444444 7888887888999999999987 567666555544
No 8
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.65 E-value=2.5e+02 Score=19.37 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=7.4
Q ss_pred cCceEEEEee
Q 041890 172 TCRRLVIVDG 181 (375)
Q Consensus 172 ~~r~vi~lD~ 181 (375)
.+.|+|+||.
T Consensus 65 ~~~PlL~lDv 74 (107)
T d1uera2 65 GLNPLLGFDV 74 (107)
T ss_dssp TCEEEEEEEC
T ss_pred CCeEEEEecc
Confidence 5678888884
No 9
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=10.48 E-value=52 Score=21.70 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=12.4
Q ss_pred EeeeEEecCCCceE
Q 041890 179 VDGWEIDSPYKSVM 192 (375)
Q Consensus 179 lD~t~lk~~~~g~l 192 (375)
.|||||-..|+|.+
T Consensus 55 ydgtylg~~yggii 68 (86)
T d1prtc2 55 YDGTYLGQAYGGII 68 (86)
T ss_dssp SSSEEECTTTTSEE
T ss_pred eccceeccccCcee
Confidence 49999999999876
No 10
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=10.45 E-value=2.6e+02 Score=19.43 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=7.4
Q ss_pred cCceEEEEee
Q 041890 172 TCRRLVIVDG 181 (375)
Q Consensus 172 ~~r~vi~lD~ 181 (375)
.+.|+|+||.
T Consensus 66 ~~~Pll~lDv 75 (111)
T d1mnga2 66 GFTPIVGIDV 75 (111)
T ss_dssp TCEEEEEEEC
T ss_pred CCcceEEEeh
Confidence 5678888884
Done!