BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041891
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 342 LETFLPKESRQRLDYEADVGHKIENIISFE-----------GFQRIERSESGSKLSQRMK 390
L+T +P + Q D + + H +++ FE GF R+E G +Q M+
Sbjct: 284 LDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQ 343
Query: 391 NAGFFSLPFCEETVKEVRS 409
AG + E+ + VR+
Sbjct: 344 FAGCLDITASEKAARFVRT 362
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHNTERFLTSCGGNEAKFRL 438
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 288 NAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLW----IPFDAL- 342
N D + F L+K LNP +IV + D S + + + NYL+ I F A
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 343 ----ETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRM 389
E F + +R R+ Y + N++ +R S G++ R+
Sbjct: 388 EIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRL 438
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,272,423
Number of Sequences: 62578
Number of extensions: 467399
Number of successful extensions: 1156
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 19
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)