Query 041891
Match_columns 449
No_of_seqs 130 out of 691
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 4E-111 1E-115 865.7 37.6 370 43-443 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.021 4.6E-07 55.8 16.1 191 127-397 34-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.6 0.75 1.6E-05 43.8 16.5 45 141-191 35-79 (231)
4 TIGR00740 methyltransferase, p 95.4 0.67 1.5E-05 44.8 15.6 49 151-211 53-101 (239)
5 TIGR02716 C20_methyl_CrtF C-20 94.9 1.1 2.4E-05 45.0 15.9 44 140-190 138-181 (306)
6 PLN02233 ubiquinone biosynthes 94.3 4.1 9E-05 40.2 18.0 58 139-209 61-118 (261)
7 PRK06202 hypothetical protein; 92.3 1.8 3.8E-05 41.6 11.4 44 146-192 55-98 (232)
8 COG2226 UbiE Methylase involve 90.7 17 0.00036 35.9 16.5 191 128-398 27-221 (238)
9 TIGR01934 MenG_MenH_UbiE ubiqu 89.8 17 0.00037 33.8 17.0 48 138-191 26-73 (223)
10 PF13649 Methyltransf_25: Meth 89.3 0.93 2E-05 37.6 5.6 53 155-222 1-53 (101)
11 PLN02336 phosphoethanolamine N 89.3 17 0.00037 38.8 16.6 45 139-191 254-298 (475)
12 TIGR02072 BioC biotin biosynth 89.3 9.1 0.0002 35.9 13.1 46 139-191 19-67 (240)
13 PRK14103 trans-aconitate 2-met 89.1 3.6 7.8E-05 40.1 10.5 43 142-191 20-62 (255)
14 PF13489 Methyltransf_23: Meth 87.8 5.6 0.00012 34.9 10.0 34 149-191 20-53 (161)
15 PRK08317 hypothetical protein; 87.6 24 0.00052 32.9 15.5 43 143-191 11-53 (241)
16 PLN02396 hexaprenyldihydroxybe 87.4 8.3 0.00018 39.6 12.2 31 152-191 132-162 (322)
17 PF01209 Ubie_methyltran: ubiE 86.4 2.7 5.9E-05 41.1 7.7 181 142-401 38-220 (233)
18 smart00138 MeTrc Methyltransfe 85.6 1.7 3.7E-05 43.1 6.0 45 148-192 96-142 (264)
19 PF13847 Methyltransf_31: Meth 84.6 8.8 0.00019 34.1 9.6 58 150-224 2-60 (152)
20 PLN02336 phosphoethanolamine N 84.6 9.5 0.0002 40.7 11.5 42 141-191 27-68 (475)
21 TIGR00477 tehB tellurite resis 83.6 9.3 0.0002 35.9 9.7 45 138-191 17-61 (195)
22 PF00891 Methyltransf_2: O-met 83.5 21 0.00046 34.3 12.4 43 141-190 90-132 (241)
23 PF12847 Methyltransf_18: Meth 82.8 7.4 0.00016 32.2 7.9 106 154-314 4-110 (112)
24 TIGR03438 probable methyltrans 82.5 13 0.00028 37.5 10.9 121 143-316 57-178 (301)
25 PRK12335 tellurite resistance 82.1 12 0.00026 37.3 10.5 65 140-224 109-173 (287)
26 PLN02244 tocopherol O-methyltr 81.2 35 0.00076 35.0 13.7 33 151-191 118-150 (340)
27 TIGR03587 Pse_Me-ase pseudamin 79.2 13 0.00028 35.5 9.1 37 270-317 109-145 (204)
28 PTZ00098 phosphoethanolamine N 79.1 43 0.00094 33.0 13.1 47 137-191 38-84 (263)
29 PRK11207 tellurite resistance 77.0 32 0.0007 32.3 11.0 44 139-191 18-61 (197)
30 PRK00216 ubiE ubiquinone/menaq 76.4 68 0.0015 30.0 17.4 43 143-191 43-85 (239)
31 COG2227 UbiG 2-polyprenyl-3-me 76.0 8.4 0.00018 38.1 6.8 101 150-313 58-159 (243)
32 PRK01683 trans-aconitate 2-met 75.8 28 0.00061 33.7 10.6 46 139-191 19-64 (258)
33 PRK11036 putative S-adenosyl-L 74.3 31 0.00068 33.5 10.5 41 141-191 35-75 (255)
34 PRK05785 hypothetical protein; 72.2 66 0.0014 31.0 12.1 32 152-191 52-83 (226)
35 COG2242 CobL Precorrin-6B meth 70.5 9.1 0.0002 36.5 5.5 94 144-273 27-136 (187)
36 PF08241 Methyltransf_11: Meth 69.5 27 0.00059 27.3 7.4 28 156-191 1-28 (95)
37 PF03291 Pox_MCEL: mRNA cappin 69.0 33 0.00071 35.5 9.6 117 151-313 62-184 (331)
38 PF09243 Rsm22: Mitochondrial 67.1 24 0.00053 35.2 8.1 138 135-332 13-156 (274)
39 TIGR02021 BchM-ChlM magnesium 65.9 72 0.0016 30.1 10.8 49 134-191 36-86 (219)
40 TIGR03439 methyl_EasF probable 65.8 79 0.0017 32.5 11.6 151 142-341 69-234 (319)
41 TIGR02081 metW methionine bios 65.4 66 0.0014 29.8 10.2 40 142-191 6-45 (194)
42 PLN02585 magnesium protoporphy 64.0 51 0.0011 33.8 9.8 32 151-191 144-175 (315)
43 PF13679 Methyltransf_32: Meth 63.8 17 0.00036 32.3 5.6 43 147-192 21-63 (141)
44 PRK15068 tRNA mo(5)U34 methylt 60.4 1.5E+02 0.0031 30.4 12.4 31 153-191 124-154 (322)
45 PRK05134 bifunctional 3-demeth 59.8 1.6E+02 0.0034 27.9 13.2 34 149-191 46-79 (233)
46 PRK10258 biotin biosynthesis p 59.6 1.2E+02 0.0026 29.1 11.3 45 138-191 29-73 (251)
47 PRK15001 SAM-dependent 23S rib 57.9 67 0.0015 33.8 9.7 55 141-209 218-272 (378)
48 PF08242 Methyltransf_12: Meth 55.3 14 0.00031 30.0 3.4 31 156-193 1-31 (99)
49 PF03848 TehB: Tellurite resis 55.1 2E+02 0.0043 27.5 12.1 111 141-313 20-131 (192)
50 PF02353 CMAS: Mycolic acid cy 54.8 88 0.0019 31.3 9.5 116 139-315 50-166 (273)
51 COG1341 Predicted GTPase or GT 53.4 57 0.0012 34.7 8.2 38 294-334 188-225 (398)
52 PRK09489 rsmC 16S ribosomal RN 52.9 1.4E+02 0.0029 31.0 10.8 64 141-222 186-249 (342)
53 TIGR00452 methyltransferase, p 51.9 1.8E+02 0.004 29.7 11.5 42 142-191 112-153 (314)
54 PF07521 RMMBL: RNA-metabolisi 51.8 30 0.00066 24.7 4.2 38 266-313 1-38 (43)
55 COG4106 Tam Trans-aconitate me 50.6 58 0.0013 32.2 7.1 114 144-322 23-136 (257)
56 smart00828 PKS_MT Methyltransf 49.3 90 0.0019 29.3 8.3 31 154-191 2-32 (224)
57 PRK11705 cyclopropane fatty ac 49.1 1.4E+02 0.003 31.4 10.3 46 138-191 154-199 (383)
58 PLN02490 MPBQ/MSBQ methyltrans 48.6 1.3E+02 0.0029 31.2 9.9 34 151-191 113-146 (340)
59 PLN02446 (5-phosphoribosyl)-5- 46.8 24 0.00052 35.4 4.0 27 148-175 55-81 (262)
60 TIGR02129 hisA_euk phosphoribo 41.2 35 0.00076 34.1 4.2 27 148-178 50-76 (253)
61 PRK06922 hypothetical protein; 40.4 1.3E+02 0.0028 34.3 8.7 33 152-191 419-451 (677)
62 PRK11873 arsM arsenite S-adeno 36.2 4.1E+02 0.009 25.8 11.7 19 381-399 210-228 (272)
63 PRK14968 putative methyltransf 36.0 3.2E+02 0.0069 24.4 10.6 32 151-191 23-54 (188)
64 COG1500 Predicted exosome subu 35.8 1E+02 0.0023 30.3 6.3 79 334-413 72-152 (234)
65 COG2230 Cfa Cyclopropane fatty 35.7 4.9E+02 0.011 26.5 12.5 49 135-191 56-104 (283)
66 PRK07580 Mg-protoporphyrin IX 35.3 1.7E+02 0.0037 27.4 7.8 33 150-191 62-94 (230)
67 COG0075 Serine-pyruvate aminot 33.1 1.6E+02 0.0035 31.2 7.8 157 205-398 91-290 (383)
68 TIGR02085 meth_trns_rumB 23S r 33.0 5.8E+02 0.013 26.5 12.4 22 295-316 314-335 (374)
69 TIGR01716 RGG_Cterm transcript 32.8 72 0.0016 30.0 4.8 56 42-97 126-182 (220)
70 PRK00274 ksgA 16S ribosomal RN 31.9 79 0.0017 31.3 5.1 55 129-192 15-74 (272)
71 PF06415 iPGM_N: BPG-independe 29.6 1.2E+02 0.0026 29.7 5.8 75 135-211 8-92 (223)
72 TIGR02469 CbiT precorrin-6Y C5 29.6 1.1E+02 0.0023 25.3 4.9 31 154-191 22-52 (124)
73 smart00650 rADc Ribosomal RNA 29.3 92 0.002 28.2 4.7 43 141-192 3-45 (169)
74 PF11455 DUF3018: Protein of 28.0 35 0.00076 27.1 1.4 19 381-399 4-22 (65)
75 COG0123 AcuC Deacetylases, inc 25.7 50 0.0011 34.3 2.5 21 149-169 152-174 (340)
76 COG1093 SUI2 Translation initi 25.4 99 0.0022 31.1 4.3 44 179-225 219-262 (269)
77 PRK03522 rumB 23S rRNA methylu 24.1 7.5E+02 0.016 24.9 12.0 102 152-317 174-276 (315)
78 PF05175 MTS: Methyltransferas 24.0 1.3E+02 0.0028 27.3 4.7 70 139-227 19-88 (170)
79 PRK08287 cobalt-precorrin-6Y C 22.4 1.8E+02 0.004 26.6 5.4 42 143-191 23-64 (187)
80 cd00874 RNA_Cyclase_Class_II R 22.0 8.8E+02 0.019 25.0 10.8 67 156-227 82-151 (326)
81 PRK13587 1-(5-phosphoribosyl)- 21.9 1.2E+02 0.0027 29.5 4.3 34 145-178 41-76 (234)
82 PLN03075 nicotianamine synthas 21.6 8.8E+02 0.019 24.8 11.0 106 154-315 126-233 (296)
83 PRK07402 precorrin-6B methylas 21.1 2E+02 0.0044 26.6 5.4 50 136-192 25-74 (196)
84 PRK10909 rsmD 16S rRNA m(2)G96 20.8 7.3E+02 0.016 23.5 12.8 26 295-320 136-164 (199)
85 KOG1165 Casein kinase (serine/ 20.6 56 0.0012 34.4 1.6 13 149-161 164-176 (449)
86 TIGR00537 hemK_rel_arch HemK-r 20.6 2.5E+02 0.0054 25.5 5.9 40 154-209 22-61 (179)
87 KOG3178 Hydroxyindole-O-methyl 20.6 2.2E+02 0.0047 29.8 5.9 92 262-399 234-328 (342)
88 PF15609 PRTase_2: Phosphoribo 20.6 4.6E+02 0.01 25.2 7.6 68 147-227 118-188 (191)
89 PRK13944 protein-L-isoaspartat 20.2 1.8E+02 0.0038 27.4 4.9 44 142-191 63-106 (205)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.5e-111 Score=865.73 Aligned_cols=370 Identities=38% Similarity=0.611 Sum_probs=340.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCCcchhHHHHHHHHHHhhhhccCCC-cccCCCCCCC-cccccccHH
Q 041891 43 IEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPT-TLSNFNGSST-NHRRLMSVT 120 (449)
Q Consensus 43 l~~LLl~CA~Av~~gd~~~A~~lL~~L~~~aS~~Gd~~qRla~yF~eAL~~Rl~~~~~~-~~~~~~~~~~-~~~~~~~~~ 120 (449)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+ +++ .|..+..... +........
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSG-SGPGLYSALPPSSPSPSESSEQLA 79 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhc-cCcccccCCCCccccccchHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999 444 5655433221 112233456
Q ss_pred HHHHHHhcCChhhhHHHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchH
Q 041891 121 ELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNV 200 (449)
Q Consensus 121 ~~~~f~e~~P~~kfa~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~ 200 (449)
+++.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+++.+. ...
T Consensus 80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~---~~~ 156 (374)
T PF03514_consen 80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG---SAD 156 (374)
T ss_pred HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC---cHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999985321 356
Q ss_pred HHHHHHHHHHHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeeccccccc
Q 041891 201 SAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLY 280 (449)
Q Consensus 201 ~l~etg~rL~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~ 280 (449)
.+++||+||.+||+++||||||++|...+ || ++ ++++|++++||+|||||+|+||||.
T Consensus 157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~-----------------~e----~l-~~~~l~~~~~E~laVn~~~~Lh~l~ 214 (374)
T PF03514_consen 157 ELQETGRRLAEFARSLGVPFEFHPVVVES-----------------LE----DL-DPSMLRLRPGEALAVNCMFQLHHLL 214 (374)
T ss_pred HHHHHHHHHHHHHHHcCccEEEEecccCc-----------------hh----hC-CHHHhCccCCcEEEEEeehhhhhhc
Confidence 89999999999999999999999986532 44 56 8899999999999999999999999
Q ss_pred CCCCCCcCCCCCchHHHHHHHHHhcCCcEEEEeeecCCCCCCchHHHHHHHHhHHHHHHhhhhhcCCCCcHHHHHHhh-h
Q 041891 281 DDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEA-D 359 (449)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvv~vE~ea~~n~~~F~~RF~eaL~yYsalFdsLda~l~~~s~eR~~iE~-~ 359 (449)
+++... .++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+ +
T Consensus 215 ~~~~~~-----~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~ 289 (374)
T PF03514_consen 215 DESGAL-----ENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLF 289 (374)
T ss_pred cccccc-----cchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 886432 4689999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred hHhhhhhhhhccCCcccccccchhHHHHHHHhCCCcccCCChHHHHHHHHHHhhcC-CCCcEEEeCCeEEEEeCCCeeEE
Q 041891 360 VGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHA-SGWGMKREEEMLALTWKGHNSVF 438 (449)
Q Consensus 360 ~g~eI~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~~ls~~~~~qak~ll~~~~-~g~~~~~e~~~l~LgWk~~pL~~ 438 (449)
||+||+|||||||.+|+||||++++|+.||++|||+++|+|++++.|||.||+.|+ .||++.+++|||+||||++||++
T Consensus 290 ~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~ 369 (374)
T PF03514_consen 290 FGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVA 369 (374)
T ss_pred hhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred Eecce
Q 041891 439 ATAWV 443 (449)
Q Consensus 439 vSaW~ 443 (449)
+||||
T Consensus 370 ~SaWr 374 (374)
T PF03514_consen 370 ASAWR 374 (374)
T ss_pred EeCcC
Confidence 99997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.13 E-value=0.021 Score=55.83 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=99.3
Q ss_pred hcCChhhhHHHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHH
Q 041891 127 DLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVG 206 (449)
Q Consensus 127 e~~P~~kfa~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg 206 (449)
...|.....|-.++..+-.-+. ..-+|+|+|.|.|.--.. |+.+- ..|..++|||+.++. .++...
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S~~-------ml~~A~ 99 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNSPA-------MIERCR 99 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCCHH-------HHHHHH
Confidence 4678888888776654433332 234799999999873333 33321 124689999997532 555555
Q ss_pred HHHHHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCC
Q 041891 207 LRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRG 286 (449)
Q Consensus 207 ~rL~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~ 286 (449)
+++.+ .|++-.++.+... +. ++ . ..+.++++ +.+.||++.++
T Consensus 100 ~~~~~----~~~~~~v~~~~~d------------------~~----~~-~-----~~~~D~vv--~~~~l~~l~~~---- 141 (247)
T PRK15451 100 RHIDA----YKAPTPVDVIEGD------------------IR----DI-A-----IENASMVV--LNFTLQFLEPS---- 141 (247)
T ss_pred HHHHh----cCCCCCeEEEeCC------------------hh----hC-C-----CCCCCEEe--hhhHHHhCCHH----
Confidence 55433 2332222223321 12 12 1 12234444 44678888653
Q ss_pred cCCCCCchHHHHHHHH-HhcCCc-EEEEeeecCCCCCCchHHHHHHHHhHHHHHHhhhhhcCCCCcHHHHHHhhhhHhhh
Q 041891 287 INAQDASLRDAFLHLI-KGLNPC-IMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKI 364 (449)
Q Consensus 287 ~~~~~~~~~~~~L~~i-r~L~P~-vvv~vE~ea~~n~~~F~~RF~eaL~yYsalFdsLda~l~~~s~eR~~iE~~~g~eI 364 (449)
.+..+|+.+ +.|+|. +++++|.-... .+...+.+.+..+.|. ....++ ...+++ .....
T Consensus 142 -------~~~~~l~~i~~~LkpGG~l~l~e~~~~~-~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~-~~~~~ 202 (247)
T PRK15451 142 -------ERQALLDKIYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHDFK-----RANGYS-----ELEISQ-KRSML 202 (247)
T ss_pred -------HHHHHHHHHHHhcCCCCEEEEEEecCCC-cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHH-HHHHH
Confidence 245566555 677997 55666754332 2333333333322221 111111 001111 11112
Q ss_pred hhhhhccCCcccccccchhHHHHHHHhCCCccc
Q 041891 365 ENIISFEGFQRIERSESGSKLSQRMKNAGFFSL 397 (449)
Q Consensus 365 ~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~ 397 (449)
+| +-+.++.++...+|++|||..+
T Consensus 203 ~~---------~~~~~~~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 203 EN---------VMLTDSVETHKARLHKAGFEHS 226 (247)
T ss_pred Hh---------hcccCCHHHHHHHHHHcCchhH
Confidence 22 3445688899999999999864
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.64 E-value=0.75 Score=43.85 Aligned_cols=45 Identities=16% Similarity=-0.040 Sum_probs=28.9
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+.++..+.=.+.-+|+|+|.|.|.-. ..|+++ .+|..++|||+.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~--~~~~~~v~gvD~s 79 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEA--VGPEGHVIGLDFS 79 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHH--hCCCCEEEEEECC
Confidence 44555554344458999999999733 344433 2245689999975
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.45 E-value=0.67 Score=44.75 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=31.5
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHH
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGN 211 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~ 211 (449)
..-+|+|+|.|.|. ++..|+++-. .|..++|||+.++ ..++...+++.+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~-------~ml~~a~~~~~~ 101 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQ-------PMVERCRQHIAA 101 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCH-------HHHHHHHHHHHh
Confidence 44579999999994 4455555422 2468999999753 255555555543
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.93 E-value=1.1 Score=45.05 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccC
Q 041891 140 NSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYS 190 (449)
Q Consensus 140 NqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~ 190 (449)
.+.|++.+.-.+.-+|+|+|.|.|. +...++++. |.+++|+++.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~ 181 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNL 181 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEec
Confidence 5667777765566799999999984 445555553 5789999975
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.33 E-value=4.1 Score=40.22 Aligned_cols=58 Identities=9% Similarity=-0.110 Sum_probs=35.3
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHH
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRL 209 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL 209 (449)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+. +|.-+||||+.++ ..++...++.
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~-------~ml~~A~~r~ 118 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSS-------EQLAVAASRQ 118 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCH-------HHHHHHHHHh
Confidence 34444444443445689999999997 334555542 2345899999753 2555555444
No 7
>PRK06202 hypothetical protein; Provisional
Probab=92.26 E-value=1.8 Score=41.62 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=27.1
Q ss_pred hhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCC
Q 041891 146 AIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRP 192 (449)
Q Consensus 146 A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~ 192 (449)
.+...+...|+|+|.|.|. +...|.....+ .| |..+||||+.++
T Consensus 55 ~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g-~~~~v~gvD~s~ 98 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGD-LAIDLARWARR-DG-LRLEVTAIDPDP 98 (232)
T ss_pred hcCCCCCcEEEEeccCCCH-HHHHHHHHHHh-CC-CCcEEEEEcCCH
Confidence 3343566789999999996 33333222221 12 457899999753
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.69 E-value=17 Score=35.93 Aligned_cols=191 Identities=17% Similarity=0.137 Sum_probs=109.1
Q ss_pred cCChhhhH-HHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHH
Q 041891 128 LIPWHRFG-FCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVG 206 (449)
Q Consensus 128 ~~P~~kfa-~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg 206 (449)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|- +.-.|++..+ .-+|||++.+. ..|+...
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g---~g~v~~~D~s~-------~ML~~a~ 92 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG---TGEVVGLDISE-------SMLEVAR 92 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC---CceEEEEECCH-------HHHHHHH
Confidence 45666666 46667777777654478999999998873 2334444433 78999998653 2566555
Q ss_pred HHHHHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCC
Q 041891 207 LRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRG 286 (449)
Q Consensus 207 ~rL~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~ 286 (449)
+|+.+ .|+.- ++-|..+ .+.|...+.-.=+|.+.|.||++.+
T Consensus 93 ~k~~~----~~~~~-i~fv~~d----------------------------Ae~LPf~D~sFD~vt~~fglrnv~d----- 134 (238)
T COG2226 93 EKLKK----KGVQN-VEFVVGD----------------------------AENLPFPDNSFDAVTISFGLRNVTD----- 134 (238)
T ss_pred HHhhc----cCccc-eEEEEec----------------------------hhhCCCCCCccCEEEeeehhhcCCC-----
Confidence 54443 34332 3334431 1223445555558888999999886
Q ss_pred cCCCCCchHHHHHHHH-HhcCCcEEEEeeecCCCCCCchHHHHHHHHh-HHHH-HHhhhhhcCCCCcHHHHHHhhhhHhh
Q 041891 287 INAQDASLRDAFLHLI-KGLNPCIMIVVDEDSDLSASSLTSRIATCFN-YLWI-PFDALETFLPKESRQRLDYEADVGHK 363 (449)
Q Consensus 287 ~~~~~~~~~~~~L~~i-r~L~P~vvv~vE~ea~~n~~~F~~RF~eaL~-yYsa-lFdsLda~l~~~s~eR~~iE~~~g~e 363 (449)
.+.+|+-+ |=|+|...+++-.=.....+.| ...++ ||.. ++=.+......+.++.. ++..-
T Consensus 135 --------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~----~~~~~~~~~~~v~P~~g~~~~~~~~~y~----yL~eS 198 (238)
T COG2226 135 --------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVL----RKAYILYYFKYVLPLIGKLVAKDAEAYE----YLAES 198 (238)
T ss_pred --------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhh----HHHHHHHHHHhHhhhhceeeecChHHHH----HHHHH
Confidence 34455444 6679998776644444443333 33333 4444 44444443332333222 33333
Q ss_pred hhhhhhccCCcccccccchhHHHHHHHhCCCcccC
Q 041891 364 IENIISFEGFQRIERSESGSKLSQRMKNAGFFSLP 398 (449)
Q Consensus 364 I~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~~ 398 (449)
| +++-..+.-.+.|+.+||..+.
T Consensus 199 i------------~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 199 I------------RRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred H------------HhCCCHHHHHHHHHhcCceEEe
Confidence 3 3334445566778889998765
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.77 E-value=17 Score=33.79 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=31.3
Q ss_pred HhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 138 ASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 138 tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..-+.+++.+.-.+...|+|+|.|.|. +...++.+ +|+..++++|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~ 73 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS 73 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC
Confidence 334456666655567899999999985 33344443 2334789999864
No 10
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.32 E-value=0.93 Score=37.55 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=31.1
Q ss_pred EEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEE
Q 041891 155 ILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEF 222 (449)
Q Consensus 155 IIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF 222 (449)
|+|+|.|.|.-=..|.+.+ .+ | |..++|||+.++ ..++...++.. ..+++.+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~-------~~l~~~~~~~~----~~~~~~~~ 53 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISP-------EMLELAKKRFS----EDGPKVRF 53 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-H-------HHHHHHHHHSH----HTTTTSEE
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCH-------HHHHHHHHhch----hcCCceEE
Confidence 7999999998777777776 22 2 569999999753 24554443332 34566666
No 11
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.28 E-value=17 Score=38.80 Aligned_cols=45 Identities=7% Similarity=-0.097 Sum_probs=30.7
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS 298 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS 298 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC
Confidence 34556666643445689999999995 3445666542 489999875
No 12
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=89.26 E-value=9.1 Score=35.91 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=28.3
Q ss_pred hHHHHHhhhcC---CCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 139 SNSAIFKAIQG---YSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 139 ANqAIleA~~g---~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..+.+++.+.. .+..+|+|+|.|.|.- ...|+.+ + |..++|+|+.+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~ 67 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDIS 67 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeCh
Confidence 33444454442 3346899999999963 3344433 2 45679999864
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.11 E-value=3.6 Score=40.15 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s 62 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS 62 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC
Confidence 46666655556789999999993 456677663 34689999875
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=87.75 E-value=5.6 Score=34.88 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 149 GYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 149 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..+.-.|+|+|.|.| .| .+.|+.+ |. ++||++.+
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~ 53 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS 53 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC
Confidence 456679999999999 34 4555554 32 99999864
No 15
>PRK08317 hypothetical protein; Provisional
Probab=87.63 E-value=24 Score=32.90 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 143 IFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 143 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+++.+.-...-.|+|+|.|.|. |. ..++.+. +|.-++|+|+.+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCC
Confidence 5566665566789999999874 33 3344432 245689999865
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=87.43 E-value=8.3 Score=39.64 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=23.1
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 152 KVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 152 ~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.-.|+|+|.|.|. +...|+.+ + .++|||+.+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s 162 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAV 162 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCC
Confidence 3479999999997 45567653 2 489999865
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.37 E-value=2.7 Score=41.07 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=65.6
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceE
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFE 221 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~Fe 221 (449)
.+++.+...+...|+|++.|.|--+.. |+++.+ |.-+|||++.++ ..|+...+++.+.... ..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s~-------~ML~~a~~k~~~~~~~---~i~ 101 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDISP-------GMLEVARKKLKREGLQ---NIE 101 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-H-------HHHHHHHHHHHHTT-----SEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCCH-------HHHHHHHHHHHhhCCC---Cee
Confidence 345555666677999999999964443 444422 345999998753 3667666666654332 333
Q ss_pred EEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHH
Q 041891 222 FKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHL 301 (449)
Q Consensus 222 F~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ 301 (449)
| +.. +.+.+...++..=+|-|.|.||.+.+. ...+=..
T Consensus 102 ~--v~~----------------------------da~~lp~~d~sfD~v~~~fglrn~~d~------------~~~l~E~ 139 (233)
T PF01209_consen 102 F--VQG----------------------------DAEDLPFPDNSFDAVTCSFGLRNFPDR------------ERALREM 139 (233)
T ss_dssp E--EE-----------------------------BTTB--S-TT-EEEEEEES-GGG-SSH------------HHHHHHH
T ss_pred E--EEc----------------------------CHHHhcCCCCceeEEEHHhhHHhhCCH------------HHHHHHH
Confidence 3 332 122234455656688899999988763 3345556
Q ss_pred HHhcCCcE-EEEeeecCCCCCCchHHHHHHHHhHHHHHHh-hhhhcCCCCcHHHHHHhhhhHhhhhhhhhccCCcccccc
Q 041891 302 IKGLNPCI-MIVVDEDSDLSASSLTSRIATCFNYLWIPFD-ALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERS 379 (449)
Q Consensus 302 ir~L~P~v-vv~vE~ea~~n~~~F~~RF~eaL~yYsalFd-sLda~l~~~s~eR~~iE~~~g~eI~niVA~eG~~R~ERh 379 (449)
.|-|+|.- ++++|-.-..| .+ +...+.+|...+- -+...+..+ +.. =+++.+-|.+....
T Consensus 140 ~RVLkPGG~l~ile~~~p~~--~~---~~~~~~~y~~~ilP~~g~l~~~~---~~~-Y~yL~~Si~~f~~~--------- 201 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRN--PL---LRALYKFYFKYILPLIGRLLSGD---REA-YRYLPESIRRFPSP--------- 201 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SS--HH---HHHHHHH----------------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCC--ch---hhceeeeeecccccccccccccc---ccc-cccccccccccccc---------
Confidence 67789975 44556433222 22 3333344444322 222222221 111 12566666554333
Q ss_pred cchhHHHHHHHhCCCcccCCCh
Q 041891 380 ESGSKLSQRMKNAGFFSLPFCE 401 (449)
Q Consensus 380 E~~~~W~~rm~~aGF~~~~ls~ 401 (449)
++-.+.|+.+||+.+....
T Consensus 202 ---~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 202 ---EELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp ----------------------
T ss_pred ---ccccccccccccccccccc
Confidence 3445678999999776543
No 18
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=85.62 E-value=1.7 Score=43.11 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=32.5
Q ss_pred cCCCeeEEEEcccCCCCchHHHHHHHhcCCC--CCCeeEEeeccCCC
Q 041891 148 QGYSKVHILDFSITHCMQWPTLIDALAKRPE--GPPSLRITVPYSRP 192 (449)
Q Consensus 148 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~--gPP~LrIT~I~~~~ 192 (449)
...+.++|.|.|.+.|--.-+|--.|++... ..+..+|+|++.++
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 3456799999999999887766666655321 13478999999763
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=84.62 E-value=8.8 Score=34.10 Aligned_cols=58 Identities=22% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCc-eEEEE
Q 041891 150 YSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVP-FEFKV 224 (449)
Q Consensus 150 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~-FeF~~ 224 (449)
.+..+|+|+|.|.|..=..|.+.+ .|..+||||+.++. .++ +..+.++..+++ .+|..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~-------~i~----~a~~~~~~~~~~ni~~~~ 60 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEE-------MIE----YAKKRAKELGLDNIEFIQ 60 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHH-------HHH----HHHHHHHHTTSTTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHH-------HHH----HhhcccccccccccceEE
Confidence 456789999999986444444321 13466999997521 333 334456667887 55544
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=84.58 E-value=9.5 Score=40.74 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..|++.+...+.-+|+|+|.|.|.-- ..|+.+. -++|||+.+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s 68 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFI 68 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCC
Confidence 45566665444448999999999544 4455442 278999864
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=83.56 E-value=9.3 Score=35.87 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred HhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 138 ASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 138 tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
++...|++++.-.+.-+|+|+|.|.|.--. .||++ + .++|||+.+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s 61 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHN 61 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECC
Confidence 566788888876556799999999997443 33444 2 479999864
No 22
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=83.52 E-value=21 Score=34.30 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=28.4
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccC
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYS 190 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~ 190 (449)
..++++..=.+.-+|||+|-|.| .+..+|+++. |.+|+|..+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dl 132 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDL 132 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeecc
Confidence 45566655445558999999999 3444555543 7899999985
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=82.79 E-value=7.4 Score=32.17 Aligned_cols=106 Identities=20% Similarity=0.102 Sum_probs=57.2
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEeecCCCCcc
Q 041891 154 HILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGD 233 (449)
Q Consensus 154 HIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v~~~~~~~~ 233 (449)
+|+|+|.|.|.- ...|+++. |..++|||+.++ ..++...++..+... +-..+|..-.
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~~---~~~~v~gvD~s~-------~~~~~a~~~~~~~~~--~~~i~~~~~d------- 60 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARLF---PGARVVGVDISP-------EMLEIARERAAEEGL--SDRITFVQGD------- 60 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHHH---TTSEEEEEESSH-------HHHHHHHHHHHHTTT--TTTEEEEESC-------
T ss_pred EEEEEcCcCCHH----HHHHHhcC---CCCEEEEEeCCH-------HHHHHHHHHHHhcCC--CCCeEEEECc-------
Confidence 689999999853 33344321 357899999753 256665555533222 2334433321
Q ss_pred chhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH-HhcCCcEEEE
Q 041891 234 IVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI-KGLNPCIMIV 312 (449)
Q Consensus 234 ~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i-r~L~P~vvv~ 312 (449)
+.. ..+. . .+=++++.+. +.+|++... ..+..+|+.+ +.|+|.-+++
T Consensus 61 -------------~~~-~~~~--~-----~~~D~v~~~~-~~~~~~~~~----------~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 61 -------------AEF-DPDF--L-----EPFDLVICSG-FTLHFLLPL----------DERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp -------------CHG-GTTT--S-----SCEEEEEECS-GSGGGCCHH----------HHHHHHHHHHHHHEEEEEEEE
T ss_pred -------------ccc-Cccc--C-----CCCCEEEECC-Cccccccch----------hHHHHHHHHHHHhcCCCcEEE
Confidence 100 0000 1 1123555555 566666543 1356677766 5779998877
Q ss_pred ee
Q 041891 313 VD 314 (449)
Q Consensus 313 vE 314 (449)
++
T Consensus 109 i~ 110 (112)
T PF12847_consen 109 IN 110 (112)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 24
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=82.53 E-value=13 Score=37.47 Aligned_cols=121 Identities=19% Similarity=0.156 Sum_probs=72.4
Q ss_pred HHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEE
Q 041891 143 IFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEF 222 (449)
Q Consensus 143 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF 222 (449)
|.+++. ....|||+|.|.|.-=..|++++.+ ..++|+|+.+. ..|+...++|.+- .-++ ++
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~-------~mL~~a~~~l~~~--~p~~--~v 117 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISA-------DALKESAAALAAD--YPQL--EV 117 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCH-------HHHHHHHHHHHhh--CCCc--eE
Confidence 555553 2347999999999777778887743 37799999753 3677777777541 1233 44
Q ss_pred EEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH
Q 041891 223 KVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI 302 (449)
Q Consensus 223 ~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i 302 (449)
..+..+ +.+.+ .+ +. ....+..+++.+...++++..+ ....||+.+
T Consensus 118 ~~i~gD------------------~~~~~-~~--~~--~~~~~~~~~~~~gs~~~~~~~~-----------e~~~~L~~i 163 (301)
T TIGR03438 118 HGICAD------------------FTQPL-AL--PP--EPAAGRRLGFFPGSTIGNFTPE-----------EAVAFLRRI 163 (301)
T ss_pred EEEEEc------------------ccchh-hh--hc--ccccCCeEEEEecccccCCCHH-----------HHHHHHHHH
Confidence 445432 11100 01 01 0112346677776778877643 356788887
Q ss_pred -HhcCCcEEEEeeec
Q 041891 303 -KGLNPCIMIVVDED 316 (449)
Q Consensus 303 -r~L~P~vvv~vE~e 316 (449)
+.|+|.-..++.-+
T Consensus 164 ~~~L~pgG~~lig~d 178 (301)
T TIGR03438 164 RQLLGPGGGLLIGVD 178 (301)
T ss_pred HHhcCCCCEEEEecc
Confidence 56799876665444
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=82.15 E-value=12 Score=37.30 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCc
Q 041891 140 NSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVP 219 (449)
Q Consensus 140 NqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~ 219 (449)
.+.+++++.-.+.-+|+|+|.|.|. +...|+.+ | .++|||+.++. .++. +.+.|+..|+.
T Consensus 109 ~~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~-------ai~~----~~~~~~~~~l~ 168 (287)
T PRK12335 109 HSEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQ-------SLEN----LQEIAEKENLN 168 (287)
T ss_pred cHHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHH-------HHHH----HHHHHHHcCCc
Confidence 3445555542222389999999997 33445554 2 58999986532 3333 33445566776
Q ss_pred eEEEE
Q 041891 220 FEFKV 224 (449)
Q Consensus 220 FeF~~ 224 (449)
+++..
T Consensus 169 v~~~~ 173 (287)
T PRK12335 169 IRTGL 173 (287)
T ss_pred eEEEE
Confidence 55543
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=81.21 E-value=35 Score=35.04 Aligned_cols=33 Identities=12% Similarity=-0.069 Sum_probs=23.8
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+.-+|+|+|.|.|. +...|+++.+ .++|||+.+
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s 150 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS 150 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC
Confidence 34579999999985 4556666542 489999864
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=79.22 E-value=13 Score=35.47 Aligned_cols=37 Identities=3% Similarity=-0.073 Sum_probs=26.8
Q ss_pred EEeecccccccCCCCCCcCCCCCchHHHHHHHHHhcCCcEEEEeeecC
Q 041891 270 INCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDS 317 (449)
Q Consensus 270 VN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvv~vE~ea 317 (449)
|-|...|||+.. ..+..+++.+.+..=+.++++|...
T Consensus 109 V~~~~vL~hl~p-----------~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 109 VLTKGVLIHINP-----------DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred EEECChhhhCCH-----------HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 335666788843 2467888888888778899999764
No 28
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=79.15 E-value=43 Score=33.02 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=32.5
Q ss_pred HHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 137 CASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 137 ~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+-+.+.|++.+.=...-+|+|+|.|.|.-- ..|+.+. ..++|||+.+
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s 84 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDIC 84 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECC
Confidence 345677777776566678999999998732 3444433 2489999864
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=77.01 E-value=32 Score=32.27 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.6
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+++.+++.+.....-.|+|+|.|.|. +...||++ | .+||||+.+
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S 61 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKN 61 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCC
Confidence 34455666654455689999999997 33445655 2 489999864
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=76.41 E-value=68 Score=30.04 Aligned_cols=43 Identities=19% Similarity=-0.031 Sum_probs=27.2
Q ss_pred HHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 143 IFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 143 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+++.+.-....+|+|+|.|.|. +...++.+ +|+..++|+++.+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 3444433345789999999985 23333333 2347899999864
No 31
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=75.95 E-value=8.4 Score=38.13 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEeecCC
Q 041891 150 YSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSS 229 (449)
Q Consensus 150 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v~~~~ 229 (449)
-...-|+|+|.|-| .|-+.||+. | ..+|||+.+.. .++.. ...|..-|+..+|.....
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~--G---a~VtgiD~se~-------~I~~A----k~ha~e~gv~i~y~~~~~-- 115 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL--G---ASVTGIDASEK-------PIEVA----KLHALESGVNIDYRQATV-- 115 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC--C---CeeEEecCChH-------HHHHH----HHhhhhccccccchhhhH--
Confidence 35667999999999 788888876 2 89999997532 23322 245667788888877753
Q ss_pred CCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHH-HHhcCCc
Q 041891 230 SAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHL-IKGLNPC 308 (449)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~-ir~L~P~ 308 (449)
|+|.+ .-+-.=||-|+--|+|+.+. . .|++. .+-++|.
T Consensus 116 ------------------edl~~----------~~~~FDvV~cmEVlEHv~dp------------~-~~~~~c~~lvkP~ 154 (243)
T COG2227 116 ------------------EDLAS----------AGGQFDVVTCMEVLEHVPDP------------E-SFLRACAKLVKPG 154 (243)
T ss_pred ------------------HHHHh----------cCCCccEEEEhhHHHccCCH------------H-HHHHHHHHHcCCC
Confidence 33211 00233377889899999884 2 35554 4666997
Q ss_pred EEEEe
Q 041891 309 IMIVV 313 (449)
Q Consensus 309 vvv~v 313 (449)
-+++.
T Consensus 155 G~lf~ 159 (243)
T COG2227 155 GILFL 159 (243)
T ss_pred cEEEE
Confidence 55543
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=75.81 E-value=28 Score=33.67 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=32.3
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s 64 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSS 64 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECC
Confidence 35567777765566789999999982 345566553 34689999865
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=74.33 E-value=31 Score=33.55 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|+|+.+
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s 75 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLS 75 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECC
Confidence 35666665 345699999999993 45566665 2 479999865
No 34
>PRK05785 hypothetical protein; Provisional
Probab=72.21 E-value=66 Score=31.02 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=22.3
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 152 KVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 152 ~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.-.|+|+|.|.|.- ...|+++.+ .++|||+.+
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S 83 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA 83 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC
Confidence 34799999999943 344555431 489999975
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=70.51 E-value=9.1 Score=36.47 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=58.7
Q ss_pred HhhhcCCCeeEEEEcccCCC---CchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhh-----
Q 041891 144 FKAIQGYSKVHILDFSITHC---MQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKF----- 215 (449)
Q Consensus 144 leA~~g~~~VHIIDf~i~~G---~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~----- 215 (449)
|-+++=.+.=|++|+|.+-| .+|. ++ .|+.|+++|+.+.+ .++.+.++..+|.-.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~-------a~~~~~~N~~~fg~~n~~vv 89 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEE-------ALELIERNAARFGVDNLEVV 89 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHH-------HHHHHHHHHHHhCCCcEEEE
Confidence 34455444459999999987 5665 21 26899999997643 677788777776411
Q ss_pred --------CCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEee
Q 041891 216 --------RDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQ 273 (449)
Q Consensus 216 --------~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~ 273 (449)
.++| +|+.+... -+.+++.+++.. . -.+++|-.||+|++
T Consensus 90 ~g~Ap~~L~~~~-~~daiFIG--------------Gg~~i~~ile~~--~--~~l~~ggrlV~nai 136 (187)
T COG2242 90 EGDAPEALPDLP-SPDAIFIG--------------GGGNIEEILEAA--W--ERLKPGGRLVANAI 136 (187)
T ss_pred eccchHhhcCCC-CCCEEEEC--------------CCCCHHHHHHHH--H--HHcCcCCeEEEEee
Confidence 1233 44544432 124556555433 2 24578899999997
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=69.49 E-value=27 Score=27.27 Aligned_cols=28 Identities=14% Similarity=-0.069 Sum_probs=19.2
Q ss_pred EEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 156 LDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 156 IDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+|+|.|.|.....|.+. +-.++|+++.+
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~ 28 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS 28 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC
Confidence 58888888776666554 35789999864
No 37
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=69.02 E-value=33 Score=35.48 Aligned_cols=117 Identities=22% Similarity=0.215 Sum_probs=62.5
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhC---CCceEEEE--e
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFR---DVPFEFKV--I 225 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~---gv~FeF~~--v 225 (449)
+..+|+|+++|.|.= |.+-...+ -=++.||+.+ ..++++..+|..+.-+.. ...+.|.. +
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis-------~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~ 126 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDIS-------EESIEEARERYKQLKKRNNSKQYRFDFIAEFI 126 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES--------HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCC-------HHHHHHHHHHHHHhccccccccccccchhhee
Confidence 789999999999852 11112112 2355777754 348999998885544321 22333333 2
Q ss_pred ecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH-Hh
Q 041891 226 DDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI-KG 304 (449)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i-r~ 304 (449)
..+. -.++ +.+ .+.-.....=+|+|+|.||+..... .....+|+.| ..
T Consensus 127 ~~D~----------------f~~~-l~~-----~~~~~~~~FDvVScQFalHY~Fese---------~~ar~~l~Nvs~~ 175 (331)
T PF03291_consen 127 AADC----------------FSES-LRE-----KLPPRSRKFDVVSCQFALHYAFESE---------EKARQFLKNVSSL 175 (331)
T ss_dssp ESTT----------------CCSH-HHC-----TSSSTTS-EEEEEEES-GGGGGSSH---------HHHHHHHHHHHHT
T ss_pred cccc----------------ccch-hhh-----hccccCCCcceeehHHHHHHhcCCH---------HHHHHHHHHHHHh
Confidence 2211 0111 111 1221223566999999999998753 3455566666 67
Q ss_pred cCCcEEEEe
Q 041891 305 LNPCIMIVV 313 (449)
Q Consensus 305 L~P~vvv~v 313 (449)
|+|.-+++.
T Consensus 176 Lk~GG~FIg 184 (331)
T PF03291_consen 176 LKPGGYFIG 184 (331)
T ss_dssp EEEEEEEEE
T ss_pred cCCCCEEEE
Confidence 899866554
No 38
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=67.09 E-value=24 Score=35.21 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=76.1
Q ss_pred HHHHhHHHHHhhhc----CCCeeEEEEcccCCCC-chHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHH
Q 041891 135 GFCASNSAIFKAIQ----GYSKVHILDFSITHCM-QWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRL 209 (449)
Q Consensus 135 a~~tANqAIleA~~----g~~~VHIIDf~i~~G~-QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL 209 (449)
+++++-..||+.+. +-+--+|+|||.|-|. =|.. .+.+- -...+|.|+.+. .+.+++++|
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~~------~~~~~~~vd~s~--------~~~~l~~~l 77 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVWP------SLKEYTCVDRSP--------EMLELAKRL 77 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHhc------CceeeeeecCCH--------HHHHHHHHH
Confidence 55677777777775 4456699999999884 3432 12221 246789998642 566778877
Q ss_pred HHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCC
Q 041891 210 GNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINA 289 (449)
Q Consensus 210 ~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~ 289 (449)
.+-..... ..+.... + ..+...+.+.+-|++ .+.|-.|.+
T Consensus 78 ~~~~~~~~-~~~~~~~----------------------------~-~~~~~~~~~~DLvi~--s~~L~EL~~-------- 117 (274)
T PF09243_consen 78 LRAGPNNR-NAEWRRV----------------------------L-YRDFLPFPPDDLVIA--SYVLNELPS-------- 117 (274)
T ss_pred Hhcccccc-cchhhhh----------------------------h-hcccccCCCCcEEEE--ehhhhcCCc--------
Confidence 65332111 0011110 0 111112222333332 334444444
Q ss_pred CCCchHHHHHHHH-HhcCCcEEEEeeecCCCCCCchHHHHHHHH
Q 041891 290 QDASLRDAFLHLI-KGLNPCIMIVVDEDSDLSASSLTSRIATCF 332 (449)
Q Consensus 290 ~~~~~~~~~L~~i-r~L~P~vvv~vE~ea~~n~~~F~~RF~eaL 332 (449)
..|..+++.+ ..++| ++|+||+..- .+...+.+.++.|
T Consensus 118 ---~~r~~lv~~LW~~~~~-~LVlVEpGt~-~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 118 ---AARAELVRSLWNKTAP-VLVLVEPGTP-AGFRRIAEARDQL 156 (274)
T ss_pred ---hHHHHHHHHHHHhccC-cEEEEcCCCh-HHHHHHHHHHHHH
Confidence 2477888888 44555 9999998764 3455666666665
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=65.91 E-value=72 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=35.0
Q ss_pred hHHHHhHHHHHhhhc--CCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 134 FGFCASNSAIFKAIQ--GYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 134 fa~~tANqAIleA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ + .++|||+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s 86 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDIS 86 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECC
Confidence 455566677777776 3456799999999995 55566654 1 389999875
No 40
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=65.77 E-value=79 Score=32.54 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=87.1
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCc-e
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVP-F 220 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~-F 220 (449)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+..+|+.+. ..|++...+|. .-..| +
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~-------~~L~~a~~~L~----~~~~p~l 132 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSR-------SELQRTLAELP----LGNFSHV 132 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCH-------HHHHHHHHhhh----hccCCCe
Confidence 4445553 23479999999999999999999743 22 36778888653 37888888876 11245 8
Q ss_pred EEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEee-cccccccCCCCCCcCCCCCchHHHHH
Q 041891 221 EFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQ-NWLRYLYDDEGRGINAQDASLRDAFL 299 (449)
Q Consensus 221 eF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~-~~Lh~l~~~~~~~~~~~~~~~~~~~L 299 (449)
++.+|... +.+.+.-+ ... .. .+...+|-+. ..+..+. +.....||
T Consensus 133 ~v~~l~gd------------------y~~~l~~l-~~~--~~-~~~~r~~~flGSsiGNf~-----------~~ea~~fL 179 (319)
T TIGR03439 133 RCAGLLGT------------------YDDGLAWL-KRP--EN-RSRPTTILWLGSSIGNFS-----------RPEAAAFL 179 (319)
T ss_pred EEEEEEec------------------HHHHHhhc-ccc--cc-cCCccEEEEeCccccCCC-----------HHHHHHHH
Confidence 88888863 33322222 100 01 1122222221 1222221 23456899
Q ss_pred HHHHh--cCCcEEEEeeecCCC---------C-CCchHHHH-HHHHhHHHHHHhh
Q 041891 300 HLIKG--LNPCIMIVVDEDSDL---------S-ASSLTSRI-ATCFNYLWIPFDA 341 (449)
Q Consensus 300 ~~ir~--L~P~vvv~vE~ea~~---------n-~~~F~~RF-~eaL~yYsalFds 341 (449)
+.+++ |+|.-..++=-|... | ......+| .+.|++....+++
T Consensus 180 ~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 180 AGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 99987 899766666444332 2 22344444 5666666666664
No 41
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=65.43 E-value=66 Score=29.85 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCC
Confidence 344555422 379999999995 5566765532 356888754
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=63.98 E-value=51 Score=33.80 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+...|+|+|.|.|. +...|+.+ | .++|||+.+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g---~~V~gvD~S 175 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G---AIVSASDIS 175 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C---CEEEEEECC
Confidence 45689999999987 44555554 2 489999875
No 43
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=63.76 E-value=17 Score=32.34 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=29.4
Q ss_pred hcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCC
Q 041891 147 IQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRP 192 (449)
Q Consensus 147 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~ 192 (449)
-...+..+|||||-|.|.==-.|-..|.+. .|.++|++|+.++
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCc
Confidence 456789999999999985322232333322 2789999999763
No 44
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=60.41 E-value=1.5e+02 Score=30.40 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=20.5
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 153 VHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 153 VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
-+|+|+|.|.|.. ...++.+ |+- +++||+.+
T Consensus 124 ~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S 154 (322)
T PRK15068 124 RTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPS 154 (322)
T ss_pred CEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCC
Confidence 3799999999842 2344544 332 48999854
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=59.78 E-value=1.6e+02 Score=27.87 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 149 GYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 149 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..+..+|+|+|.|.|.- ...++.+ + .++|+|+.+
T Consensus 46 ~~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s 79 (233)
T PRK05134 46 GLFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDAS 79 (233)
T ss_pred CCCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCC
Confidence 44567899999998863 3344443 2 469999864
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=59.58 E-value=1.2e+02 Score=29.14 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=30.7
Q ss_pred HhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 138 ASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 138 tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..-+.+++.+...+.-.|+|+|.|.|. +.+.|+.+ | -++|+++.+
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~~v~~~D~s 73 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G---SQVTALDLS 73 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C---CeEEEEECC
Confidence 344556676665445579999999993 55666654 2 478999864
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.94 E-value=67 Score=33.85 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHH
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRL 209 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL 209 (449)
..+++.+.....=.|+|+|.|.|. +--.|+++. |..+||+|+.+. ..++.+.+++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~-------~Av~~A~~N~ 272 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESP-------MAVASSRLNV 272 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCH-------HHHHHHHHHH
Confidence 335555543222279999999996 344555553 568999999753 2455555444
No 48
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=55.26 E-value=14 Score=30.03 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCC
Q 041891 156 LDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPP 193 (449)
Q Consensus 156 IDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~ 193 (449)
+|+|.|.|.==..|++.+ |..++|+++.++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHH
Confidence 588888886555666665 7899999998754
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=55.10 E-value=2e+02 Score=27.51 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=66.5
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCce
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPF 220 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~F 220 (449)
..+++|++--+.--++|+|.|.|.= --.||++ -+.+|+++.+. ..++ +|.+.|+.-++++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~-----G~~VtAvD~s~-------~al~----~l~~~a~~~~l~i 79 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ-----GFDVTAVDISP-------VALE----KLQRLAEEEGLDI 79 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT-----T-EEEEEESSH-------HHHH----HHHHHHHHTT-TE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC-----CCeEEEEECCH-------HHHH----HHHHHHhhcCcee
Confidence 4577777655667899999999841 1236665 27899998642 1333 4677888889997
Q ss_pred EEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHH
Q 041891 221 EFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLH 300 (449)
Q Consensus 221 eF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~ 300 (449)
+...... + +. .+ +++.=+|.+...+++|..+ .++.++.
T Consensus 80 ~~~~~Dl--------------------~----~~------~~-~~~yD~I~st~v~~fL~~~-----------~~~~i~~ 117 (192)
T PF03848_consen 80 RTRVADL--------------------N----DF------DF-PEEYDFIVSTVVFMFLQRE-----------LRPQIIE 117 (192)
T ss_dssp EEEE-BG--------------------C----CB------S--TTTEEEEEEESSGGGS-GG-----------GHHHHHH
T ss_pred EEEEecc--------------------h----hc------cc-cCCcCEEEEEEEeccCCHH-----------HHHHHHH
Confidence 6665542 1 11 12 2333355566778888765 3677877
Q ss_pred HHH-hcCCcEEEEe
Q 041891 301 LIK-GLNPCIMIVV 313 (449)
Q Consensus 301 ~ir-~L~P~vvv~v 313 (449)
.++ .++|.-+.+.
T Consensus 118 ~m~~~~~pGG~~li 131 (192)
T PF03848_consen 118 NMKAATKPGGYNLI 131 (192)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHhhcCCcEEEEE
Confidence 775 4799755444
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=54.82 E-value=88 Score=31.32 Aligned_cols=116 Identities=14% Similarity=0.057 Sum_probs=65.8
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCC
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDV 218 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv 218 (449)
-...|+|.+.=+.-=||+|+|.| |-.++..+|++.| .++|||..+.. - -....+.++..|+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~-------Q----~~~a~~~~~~~gl 110 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEE-------Q----AEYARERIREAGL 110 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HH-------H----HHHHHHHHHCSTS
T ss_pred HHHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHH-------H----HHHHHHHHHhcCC
Confidence 34456677654555699999876 6688888998863 68999986421 1 2224455667788
Q ss_pred ceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHH
Q 041891 219 PFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAF 298 (449)
Q Consensus 219 ~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~ 298 (449)
+=....+..+ +. ++ +. +=++ |-++-.+.|+... ....|
T Consensus 111 ~~~v~v~~~D------------------~~----~~-~~------~fD~--IvSi~~~Ehvg~~-----------~~~~~ 148 (273)
T PF02353_consen 111 EDRVEVRLQD------------------YR----DL-PG------KFDR--IVSIEMFEHVGRK-----------NYPAF 148 (273)
T ss_dssp SSTEEEEES-------------------GG----G----------S-SE--EEEESEGGGTCGG-----------GHHHH
T ss_pred CCceEEEEee------------------cc----cc-CC------CCCE--EEEEechhhcChh-----------HHHHH
Confidence 7555555442 22 22 11 1123 2233446677543 36788
Q ss_pred HHHH-HhcCCcEEEEeee
Q 041891 299 LHLI-KGLNPCIMIVVDE 315 (449)
Q Consensus 299 L~~i-r~L~P~vvv~vE~ 315 (449)
++.+ +-|+|.-.+++..
T Consensus 149 f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 149 FRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HHHHHHHSETTEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEe
Confidence 8888 5579998877753
No 51
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=53.44 E-value=57 Score=34.66 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCCcEEEEeeecCCCCCCchHHHHHHHHhH
Q 041891 294 LRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNY 334 (449)
Q Consensus 294 ~~~~~L~~ir~L~P~vvv~vE~ea~~n~~~F~~RF~eaL~y 334 (449)
.++--...|...+|+.|+..|.+ |..+++.+=.++..|
T Consensus 188 g~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~ 225 (398)
T COG1341 188 GLELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY 225 (398)
T ss_pred HHHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE
Confidence 35667788899999999999887 344444444444444
No 52
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.93 E-value=1.4e+02 Score=31.00 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=38.4
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCce
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPF 220 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~F 220 (449)
..+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+.+. ..++.+.+++.+ .++..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~-------~Al~~A~~nl~~----n~l~~ 247 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSA-------AALESSRATLAA----NGLEG 247 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCH-------HHHHHHHHHHHH----cCCCC
Confidence 445555543323379999999997 444555552 457899998753 255555554433 34554
Q ss_pred EE
Q 041891 221 EF 222 (449)
Q Consensus 221 eF 222 (449)
+|
T Consensus 248 ~~ 249 (342)
T PRK09489 248 EV 249 (342)
T ss_pred EE
Confidence 44
No 53
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=51.93 E-value=1.8e+02 Score=29.74 Aligned_cols=42 Identities=10% Similarity=0.039 Sum_probs=26.4
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+|++.+...+.=.|+|+|.|.|. ++..++.+ |+ -+++||+.+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS 153 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPT 153 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCC
Confidence 45554433333489999999996 33444443 43 268999864
No 54
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=51.78 E-value=30 Score=24.70 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=25.0
Q ss_pred ceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHHHhcCCcEEEEe
Q 041891 266 EALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVV 313 (449)
Q Consensus 266 EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvv~v 313 (449)
|.+-|||...--++.+. ..++.++..|+.++|+-+++|
T Consensus 1 e~i~v~a~v~~~~fSgH----------ad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGH----------ADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS-----------BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCC----------CCHHHHHHHHHhcCCCEEEEe
Confidence 35667766432224443 247889999999999999988
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=50.58 E-value=58 Score=32.21 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=70.2
Q ss_pred HhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEE
Q 041891 144 FKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFK 223 (449)
Q Consensus 144 leA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~ 223 (449)
+.-+.-+.---|+|+|+|-|-+= +-|++|- |-=.||||+++++ .+++ |+....+..|.
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~~-------Mla~--------Aa~rlp~~~f~ 80 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSPA-------MLAK--------AAQRLPDATFE 80 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCHH-------HHHH--------HHHhCCCCcee
Confidence 34445566677999999999654 5566665 4568999998643 4443 44444566665
Q ss_pred EeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHHH
Q 041891 224 VIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIK 303 (449)
Q Consensus 224 ~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ir 303 (449)
.-... +|. ++ .+-..|.-|.+ ||-|++. .+.|=+.+-
T Consensus 81 ~aDl~-----------------~w~--------p~----~~~dllfaNAv--lqWlpdH------------~~ll~rL~~ 117 (257)
T COG4106 81 EADLR-----------------TWK--------PE----QPTDLLFANAV--LQWLPDH------------PELLPRLVS 117 (257)
T ss_pred cccHh-----------------hcC--------CC----Cccchhhhhhh--hhhcccc------------HHHHHHHHH
Confidence 43321 121 11 22346666776 4555664 456778888
Q ss_pred hcCCcEEEEeeecCCCCCC
Q 041891 304 GLNPCIMIVVDEDSDLSAS 322 (449)
Q Consensus 304 ~L~P~vvv~vE~ea~~n~~ 322 (449)
.|.|.-+.-|-.-.|+..|
T Consensus 118 ~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 118 QLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhCCCceEEEECCCccCch
Confidence 9999988888665555433
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=49.34 E-value=90 Score=29.34 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=21.6
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 154 HILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 154 HIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+|+|+|.|.|. +...++++. |..++|||+.+
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s 32 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS 32 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC
Confidence 68999999885 344555543 34689999864
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=49.06 E-value=1.4e+02 Score=31.39 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=29.5
Q ss_pred HhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 138 ASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 138 tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
..-..|++.+.-...=+|+|+|.|.|. +...++++.+ .++|||+.+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS 199 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS 199 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC
Confidence 334456666543444589999997774 4455565543 489999865
No 58
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=48.61 E-value=1.3e+02 Score=31.19 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=22.7
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
...+|+|+|.|.|.-.. .++++.++ .++|+++.+
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S 146 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQS 146 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECC
Confidence 45689999999987433 34443221 579999864
No 59
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=46.82 E-value=24 Score=35.37 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.9
Q ss_pred cCCCeeEEEEcccCCCCchHHHHHHHhc
Q 041891 148 QGYSKVHILDFSITHCMQWPTLIDALAK 175 (449)
Q Consensus 148 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~ 175 (449)
.|.+.+||||+|-+.+.+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 556777776
No 60
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=41.19 E-value=35 Score=34.05 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=19.4
Q ss_pred cCCCeeEEEEcccCCCCchHHHHHHHhcCCC
Q 041891 148 QGYSKVHILDFSITHCMQWPTLIDALAKRPE 178 (449)
Q Consensus 148 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~ 178 (449)
.|.+.+||||+ +.+ |. .+|..+.+..+
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~ 76 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYP 76 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCC
Confidence 48999999999 445 66 56666665543
No 61
>PRK06922 hypothetical protein; Provisional
Probab=40.38 E-value=1.3e+02 Score=34.31 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.3
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 152 KVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 152 ~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.-.|+|+|.|.|. +...|+.+. |..++|||+.+
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS 451 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS 451 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC
Confidence 3479999999983 445666653 46899999975
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=36.16 E-value=4.1e+02 Score=25.78 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=14.5
Q ss_pred chhHHHHHHHhCCCcccCC
Q 041891 381 SGSKLSQRMKNAGFFSLPF 399 (449)
Q Consensus 381 ~~~~W~~rm~~aGF~~~~l 399 (449)
....|...|+.+||..+.+
T Consensus 210 ~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CHHHHHHHHHHCCCCceEE
Confidence 3457888899999987655
No 63
>PRK14968 putative methyltransferase; Provisional
Probab=36.02 E-value=3.2e+02 Score=24.42 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=23.4
Q ss_pred CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+.-.|+|+|.|.|. +...|+.+ ..++|+++.+
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s 54 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDIN 54 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-----cceEEEEECC
Confidence 34469999999998 45556665 1578999865
No 64
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=35.79 E-value=1e+02 Score=30.33 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=55.7
Q ss_pred HHHHHHhhhhhc-CCCCcHHHHHHhhhhHhhhhhhhhccCCccccc-ccchhHHHHHHHhCCCcccCCChHHHHHHHHHH
Q 041891 334 YLWIPFDALETF-LPKESRQRLDYEADVGHKIENIISFEGFQRIER-SESGSKLSQRMKNAGFFSLPFCEETVKEVRSLL 411 (449)
Q Consensus 334 yYsalFdsLda~-l~~~s~eR~~iE~~~g~eI~niVA~eG~~R~ER-hE~~~~W~~rm~~aGF~~~~ls~~~~~qak~ll 411 (449)
.+...-+-|... ++-..++|..+-..-.++|-|+|+..+.+..-+ +-+-.+=...|+.|||..-|+.+ +..|+...|
T Consensus 72 ~~eI~~eIl~kGeiQlTaeqR~~m~e~k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evl 150 (234)
T COG1500 72 PDEIAEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVL 150 (234)
T ss_pred HHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHH
Confidence 333444444432 444566676555567899999999998875444 55667888899999999999975 567877777
Q ss_pred hh
Q 041891 412 DE 413 (449)
Q Consensus 412 ~~ 413 (449)
+.
T Consensus 151 K~ 152 (234)
T COG1500 151 KA 152 (234)
T ss_pred HH
Confidence 64
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.70 E-value=4.9e+02 Score=26.48 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 135 GFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 135 a~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
|.+..=..|++-+.=+.--||+|||.| |-.|+...|++.+ .++|||..+
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS 104 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS 104 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC
Confidence 444555666666666778899999764 7789999999863 788999865
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=35.26 E-value=1.7e+02 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred CCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 150 YSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 150 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.+.-.|+|+|.|.|.- ...|+.+ + .++|||+.+
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s 94 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS 94 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC
Confidence 3456899999999953 3345543 2 249999865
No 67
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=33.10 E-value=1.6e+02 Score=31.18 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=88.8
Q ss_pred HHHHHHHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCC
Q 041891 205 VGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEG 284 (449)
Q Consensus 205 tg~rL~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~ 284 (449)
.|.|+.+.|+.+|.+...-.+.-. . ..+.+.+- +.|+ +.+++=+|-++ ..|+.
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~wg----~----------~v~p~~v~------~~L~-~~~~~~~V~~v------H~ETS 143 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVEWG----E----------AVDPEEVE------EALD-KDPDIKAVAVV------HNETS 143 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCCCC----C----------CCCHHHHH------HHHh-cCCCccEEEEE------eccCc
Confidence 488999999999988766554311 1 11233211 1123 22223233333 14544
Q ss_pred CCcCCCCCchHHHHHHHHHhcCCcEEEEeeecCCCC-----------------------C------CchHHHHHHHHh--
Q 041891 285 RGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLS-----------------------A------SSLTSRIATCFN-- 333 (449)
Q Consensus 285 ~~~~~~~~~~~~~~L~~ir~L~P~vvv~vE~ea~~n-----------------------~------~~F~~RF~eaL~-- 333 (449)
.++ -++++++=..+|+- ..+++|+-=+... . -.+-+|..+++.
T Consensus 144 TGv----lnpl~~I~~~~k~~--g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~ 217 (383)
T COG0075 144 TGV----LNPLKEIAKAAKEH--GALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEER 217 (383)
T ss_pred ccc----cCcHHHHHHHHHHc--CCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcC
Confidence 333 36888888888887 6666665443311 1 144566666665
Q ss_pred ----HHHHHHhhhhhc-----CCCCcHHHHHHhhhh-HhhhhhhhhccC-CcccccccchhHH-HHHHHhCCCcccC
Q 041891 334 ----YLWIPFDALETF-----LPKESRQRLDYEADV-GHKIENIISFEG-FQRIERSESGSKL-SQRMKNAGFFSLP 398 (449)
Q Consensus 334 ----yYsalFdsLda~-----l~~~s~eR~~iE~~~-g~eI~niVA~eG-~~R~ERhE~~~~W-~~rm~~aGF~~~~ 398 (449)
||.-+.+-++.. .|-..+ +-.++ =++-.+.|..|| ..|++||.....+ |+.|+..||+..+
T Consensus 218 ~~~~~ylDL~~~~~~~~~~~~~p~Tpp----v~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 218 KHPSFYLDLKKWLKYMEKKGSTPYTPP----VNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCCceeecHHHHHHHHhhcCCCCCCCC----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 666655544321 222211 11222 255566777788 5699999888655 6677889999777
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=33.05 E-value=5.8e+02 Score=26.54 Aligned_cols=22 Identities=5% Similarity=0.206 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCcEEEEeeec
Q 041891 295 RDAFLHLIKGLNPCIMIVVDED 316 (449)
Q Consensus 295 ~~~~L~~ir~L~P~vvv~vE~e 316 (449)
-..++..|..++|+-+|.++-+
T Consensus 314 ~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 314 GKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred cHHHHHHHHhcCCCeEEEEEeC
Confidence 3578888889999988888743
No 69
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=32.75 E-value=72 Score=29.96 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=46.6
Q ss_pred cHHHHHHHHH-HHHhcCCHHHHHHHHHHhhccCCCCCCcchhHHHHHHHHHHhhhhc
Q 041891 42 CIEKLLLHCA-SALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASK 97 (449)
Q Consensus 42 ~l~~LLl~CA-~Av~~gd~~~A~~lL~~L~~~aS~~Gd~~qRla~yF~eAL~~Rl~~ 97 (449)
.+..+|+.|. ..+..++.+.|..++..|+.+..|..+-..|+...|.+|+..=..|
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 4566666666 6788899999999999999998887788899999999999755544
No 70
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=31.91 E-value=79 Score=31.33 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred CChhhhHH-HHhHHHHH----hhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCC
Q 041891 129 IPWHRFGF-CASNSAIF----KAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRP 192 (449)
Q Consensus 129 ~P~~kfa~-~tANqAIl----eA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~ 192 (449)
.|=-+++. |..|+.|. +.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.++
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~ 74 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDR 74 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCH
Confidence 34334443 44444444 44444455689999999984 55666666 32 899999764
No 71
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=29.64 E-value=1.2e+02 Score=29.71 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHhHHHHHhhhcC----CCeeEEEEccc---CCC--CchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCc-chHHHHH
Q 041891 135 GFCASNSAIFKAIQG----YSKVHILDFSI---THC--MQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPL-LNVSAEE 204 (449)
Q Consensus 135 a~~tANqAIleA~~g----~~~VHIIDf~i---~~G--~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~-~~~~l~e 204 (449)
+.|..|.+++++++. .++||++=+=- .|+ -+...|++..+++ |-+.+.|-+|....+.||. ....+++
T Consensus 8 g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~--gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 8 GSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQ--GVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp TGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHT--T-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHc--CCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 456788999988853 35999987532 233 4678888887765 5567888888776666664 3456666
Q ss_pred HHHHHHH
Q 041891 205 VGLRLGN 211 (449)
Q Consensus 205 tg~rL~~ 211 (449)
+...|.+
T Consensus 86 l~~~l~~ 92 (223)
T PF06415_consen 86 LEEKLAE 92 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.60 E-value=1.1e+02 Score=25.29 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=21.5
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 154 HILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 154 HIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+|+|+|.|.|.. ...++++. |..++|+|+.+
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999998754 33344432 23789999865
No 73
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=29.34 E-value=92 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCC
Q 041891 141 SAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRP 192 (449)
Q Consensus 141 qAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~ 192 (449)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 346666653334489999999886 44555655 2 3799998753
No 74
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=27.96 E-value=35 Score=27.09 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.1
Q ss_pred chhHHHHHHHhCCCcccCC
Q 041891 381 SGSKLSQRMKNAGFFSLPF 399 (449)
Q Consensus 381 ~~~~W~~rm~~aGF~~~~l 399 (449)
+..+-|.+|+++|++|+.+
T Consensus 4 RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 4 RVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHcCCCccee
Confidence 4556689999999999987
No 75
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.70 E-value=50 Score=34.33 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.0
Q ss_pred CCCeeEEEEcccCC--CCchHHH
Q 041891 149 GYSKVHILDFSITH--CMQWPTL 169 (449)
Q Consensus 149 g~~~VHIIDf~i~~--G~QWp~L 169 (449)
|.+||=|||||+-| |.|+.--
T Consensus 152 ~~~RVaIiD~DvHHGnGTqeify 174 (340)
T COG0123 152 GVKRVAIIDFDVHHGNGTQEIFY 174 (340)
T ss_pred CCCcEEEEEecCCCChhhHHHHc
Confidence 88999999999965 5787543
No 76
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=25.35 E-value=99 Score=31.09 Aligned_cols=44 Identities=18% Similarity=-0.021 Sum_probs=36.6
Q ss_pred CCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEe
Q 041891 179 GPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVI 225 (449)
Q Consensus 179 gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v 225 (449)
|+|..|||..+++.. .....|+++.+.+.+-++.+|....|.--
T Consensus 219 gaPrYri~v~a~dyk---kaee~l~~a~~~~~~~ikk~gg~~~~~r~ 262 (269)
T COG1093 219 GAPRYRIDVQAPDYK---KAEEVLEKAAEAAIKTIKKLGGEGTFIRE 262 (269)
T ss_pred cCCeEEEEEecCCHH---HHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 789999999887632 34457999999999999999999999864
No 77
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=24.10 E-value=7.5e+02 Score=24.90 Aligned_cols=102 Identities=8% Similarity=0.059 Sum_probs=56.6
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCc-eEEEEeecCCC
Q 041891 152 KVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVP-FEFKVIDDSSS 230 (449)
Q Consensus 152 ~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~-FeF~~v~~~~~ 230 (449)
.-+|+|++.|.|. +--.||.+ + -+++||+.++. .++.+.++ |+..|++ .+|..-.
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~-------av~~A~~n----~~~~~l~~v~~~~~D---- 229 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAE-------AIACAKQS----AAELGLTNVQFQALD---- 229 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHH-------HHHHHHHH----HHHcCCCceEEEEcC----
Confidence 3589999999985 33445553 2 37899987532 45544333 3445663 5553322
Q ss_pred CccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHHHhcCCcEE
Q 041891 231 AGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIM 310 (449)
Q Consensus 231 ~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vv 310 (449)
.+.+. .. .. ..-++|++|=. .. +.-+.++..+..++|+.+
T Consensus 230 ----------------~~~~~-----~~-~~-~~~D~Vv~dPP--------r~---------G~~~~~~~~l~~~~~~~i 269 (315)
T PRK03522 230 ----------------STQFA-----TA-QG-EVPDLVLVNPP--------RR---------GIGKELCDYLSQMAPRFI 269 (315)
T ss_pred ----------------HHHHH-----Hh-cC-CCCeEEEECCC--------CC---------CccHHHHHHHHHcCCCeE
Confidence 22211 00 10 12357777622 11 123467788888999988
Q ss_pred EEeeecC
Q 041891 311 IVVDEDS 317 (449)
Q Consensus 311 v~vE~ea 317 (449)
+.+.-+.
T Consensus 270 vyvsc~p 276 (315)
T PRK03522 270 LYSSCNA 276 (315)
T ss_pred EEEECCc
Confidence 8876443
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=24.00 E-value=1.3e+02 Score=27.35 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred hHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCC
Q 041891 139 SNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDV 218 (449)
Q Consensus 139 ANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv 218 (449)
+-..+++.+...+.=+|+|+|.|.|.- =-.|+.+ -|..++|+++.++ ..++-+.++ ++..++
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~---~~~~~v~~vDi~~-------~a~~~a~~n----~~~n~~ 80 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKR---GPDAKVTAVDINP-------DALELAKRN----AERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHT---STCEEEEEEESBH-------HHHHHHHHH----HHHTTC
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHh---CCCCEEEEEcCCH-------HHHHHHHHH----HHhcCc
Confidence 444666776655666799999999942 2234444 2578899998653 244444333 344455
Q ss_pred ceEEEEeec
Q 041891 219 PFEFKVIDD 227 (449)
Q Consensus 219 ~FeF~~v~~ 227 (449)
.- ++.+..
T Consensus 81 ~~-v~~~~~ 88 (170)
T PF05175_consen 81 EN-VEVVQS 88 (170)
T ss_dssp TT-EEEEES
T ss_pred cc-cccccc
Confidence 53 555544
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=22.42 E-value=1.8e+02 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=25.5
Q ss_pred HHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 143 IFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 143 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
+++.+.-.+.-.|+|+|.|.|. +--.++.+ + |..++|+|+.+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~s 64 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIERN 64 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEECC
Confidence 3344432333479999999983 22333443 2 45789999975
No 80
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=22.02 E-value=8.8e+02 Score=25.00 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred EEcccCCCCchHHHHHHHh---cCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEeec
Q 041891 156 LDFSITHCMQWPTLIDALA---KRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDD 227 (449)
Q Consensus 156 IDf~i~~G~QWp~LiqaLa---~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v~~ 227 (449)
+.|+++...--.-++|.|- --.++|-+++|||+...+..|+ -+.++.+ +.-.-+.+|++++++.+..
T Consensus 82 ~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPs--vD~~~~v---~lP~l~~~G~~~~l~v~rR 151 (326)
T cd00874 82 YEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPP--IDYLRNV---TLPLLERMGIEAELEVLRR 151 (326)
T ss_pred EEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCC--HHHHHHH---HHHHHHhCCCcEEEEEEeC
Confidence 3444444445555666653 1235666899999875433231 2344444 4445567999999888754
No 81
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.93 E-value=1.2e+02 Score=29.46 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=24.5
Q ss_pred hhhcCCCeeEEEEcccCC-C-CchHHHHHHHhcCCC
Q 041891 145 KAIQGYSKVHILDFSITH-C-MQWPTLIDALAKRPE 178 (449)
Q Consensus 145 eA~~g~~~VHIIDf~i~~-G-~QWp~LiqaLa~R~~ 178 (449)
+...|.+.+||+|++-.. | -.=..+|+.+++..+
T Consensus 41 ~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~ 76 (234)
T PRK13587 41 SQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTT 76 (234)
T ss_pred HhccCCCEEEEEECcccccCCcchHHHHHHHHhhcC
Confidence 344589999999998652 3 345678999987543
No 82
>PLN03075 nicotianamine synthase; Provisional
Probab=21.58 E-value=8.8e+02 Score=24.78 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=59.6
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCC--ceEEEEeecCCCC
Q 041891 154 HILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDV--PFEFKVIDDSSSA 231 (449)
Q Consensus 154 HIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv--~FeF~~v~~~~~~ 231 (449)
.|+|+|.|.|-=|..++.+-. .|.-++|||+.++ ...+..+++.+- ..|+ ..+|+.....
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~--------~ai~~Ar~~~~~--~~gL~~rV~F~~~Da~--- 187 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDP--------SANDVARRLVSS--DPDLSKRMFFHTADVM--- 187 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCH--------HHHHHHHHHhhh--ccCccCCcEEEECchh---
Confidence 389999998877776665432 2445999999763 334445544322 2333 3666655421
Q ss_pred ccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHHHhcCCcEEE
Q 041891 232 GDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMI 311 (449)
Q Consensus 232 ~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvv 311 (449)
+ + ... ..+=+.|.+. .||++... .+.+.+-+..+.|+|.-++
T Consensus 188 ----------------~-----~-~~~---l~~FDlVF~~---ALi~~dk~----------~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 188 ----------------D-----V-TES---LKEYDVVFLA---ALVGMDKE----------EKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred ----------------h-----c-ccc---cCCcCEEEEe---cccccccc----------cHHHHHHHHHHhcCCCcEE
Confidence 1 1 000 1122344433 78877543 2444444444669999999
Q ss_pred Eeee
Q 041891 312 VVDE 315 (449)
Q Consensus 312 ~vE~ 315 (449)
++.-
T Consensus 230 vlr~ 233 (296)
T PLN03075 230 MLRS 233 (296)
T ss_pred EEec
Confidence 9886
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=21.08 E-value=2e+02 Score=26.59 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=30.5
Q ss_pred HHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCC
Q 041891 136 FCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRP 192 (449)
Q Consensus 136 ~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~ 192 (449)
.-...+.+++.+.-...=.|+|+|.|.|. +. ..++... |.-++|+|+.++
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~---~~la~~~---~~~~V~~vD~s~ 74 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGT-IP---VEAGLLC---PKGRVIAIERDE 74 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HH---HHHHHHC---CCCEEEEEeCCH
Confidence 33455566676654444479999999997 22 2223221 235899999753
No 84
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=20.82 E-value=7.3e+02 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHHHh---cCCcEEEEeeecCCCC
Q 041891 295 RDAFLHLIKG---LNPCIMIVVDEDSDLS 320 (449)
Q Consensus 295 ~~~~L~~ir~---L~P~vvv~vE~ea~~n 320 (449)
...++..|.. ++|+-++++|.....+
T Consensus 136 ~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 136 LEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred HHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 4567777777 6999999999876543
No 85
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=20.63 E-value=56 Score=34.41 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.7
Q ss_pred CCCeeEEEEcccC
Q 041891 149 GYSKVHILDFSIT 161 (449)
Q Consensus 149 g~~~VHIIDf~i~ 161 (449)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 3568999999984
No 86
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.63 E-value=2.5e+02 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHH
Q 041891 154 HILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRL 209 (449)
Q Consensus 154 HIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL 209 (449)
.|+|+|.|.|. +...++.+ ++ ++|+|+.++. .++.+.+++
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~-------~~~~a~~~~ 61 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPF-------AVKELRENA 61 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHH-------HHHHHHHHH
Confidence 49999999994 45556654 33 8999987532 455555544
No 87
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=20.58 E-value=2.2e+02 Score=29.80 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred cCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH-HhcCCcE-EEEeeecCCCCCCchHHHHHHHHhHHHHHH
Q 041891 262 LREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI-KGLNPCI-MIVVDEDSDLSASSLTSRIATCFNYLWIPF 339 (449)
Q Consensus 262 ~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i-r~L~P~v-vv~vE~ea~~n~~~F~~RF~eaL~yYsalF 339 (449)
+-+++++.+ ..-|||+.|+. .-.||++. ++|.|+- ++++|.-.+.. ..|
T Consensus 234 ~P~~daI~m--kWiLhdwtDed-----------cvkiLknC~~sL~~~GkIiv~E~V~p~e----------------~~~ 284 (342)
T KOG3178|consen 234 TPKGDAIWM--KWILHDWTDED-----------CVKILKNCKKSLPPGGKIIVVENVTPEE----------------DKF 284 (342)
T ss_pred CCCcCeEEE--EeecccCChHH-----------HHHHHHHHHHhCCCCCEEEEEeccCCCC----------------CCc
Confidence 345665554 45599999974 45677766 6778874 44456544331 122
Q ss_pred hhhhhcCCCCcHHHHHHhhhhHhhhhhhhhcc-CCcccccccchhHHHHHHHhCCCcccCC
Q 041891 340 DALETFLPKESRQRLDYEADVGHKIENIISFE-GFQRIERSESGSKLSQRMKNAGFFSLPF 399 (449)
Q Consensus 340 dsLda~l~~~s~eR~~iE~~~g~eI~niVA~e-G~~R~ERhE~~~~W~~rm~~aGF~~~~l 399 (449)
|-+++... +...+--.+-|+ |-+| +..+|+.-+..+||....+
T Consensus 285 dd~~s~v~------------~~~d~lm~~~~~~Gker-----t~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 285 DDIDSSVT------------RDMDLLMLTQTSGGKER-----TLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred ccccccee------------ehhHHHHHHHhccceec-----cHHHHHhcchhhcCceeEE
Confidence 33333211 222333344455 6666 4578999999999986543
No 88
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=20.57 E-value=4.6e+02 Score=25.17 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=49.7
Q ss_pred hcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEee---ccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEE
Q 041891 147 IQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITV---PYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFK 223 (449)
Q Consensus 147 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~---I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~ 223 (449)
+.+.+.|=+||=.|+.|---..+|++|-... | .=|++. +++.+ .+-..+..+.++.+|+|.+|.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~--p-~~~yvvasL~d~~~----------~~~~~~~~~~~~~lgi~i~~v 184 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKY--P-RKRYVVASLLDWRS----------EEDRARFEALAEELGIPIDVV 184 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhC--C-CceEEEEEEeeCCC----------HHHHHHHHHHHHHcCCcEEEE
Confidence 4457799999999999999999999998763 3 333333 23321 233456778899999999998
Q ss_pred Eeec
Q 041891 224 VIDD 227 (449)
Q Consensus 224 ~v~~ 227 (449)
.+..
T Consensus 185 sL~~ 188 (191)
T PF15609_consen 185 SLLS 188 (191)
T ss_pred Eeec
Confidence 8764
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.25 E-value=1.8e+02 Score=27.43 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=27.9
Q ss_pred HHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCC
Q 041891 142 AIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSR 191 (449)
Q Consensus 142 AIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~ 191 (449)
.++++++-...-+|+|+|.|.|..=..|.+.+ . +.-++++|+.+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~ 106 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIV 106 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCC
Confidence 45566654455679999999987543443333 1 12379999875
Done!