BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041894
(219 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 136/186 (73%), Gaps = 7/186 (3%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M +T+ L LL+NP S+K+KSQAKQLHAQI +T P S L+S +L IY+N NL+HDSL
Sbjct: 1 MNTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ ++L +P +AWKSIIRC T +GL + SL+ F++M+ SG YPDHNVFPSVLKSCTL+
Sbjct: 60 LIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM 119
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMHIYDRFQGFGFNGGREASV 178
D RFGESVH CIIRLG+ DLYT NALMNMY++ ++ +++ Y + F+ G+ + V
Sbjct: 120 KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKV----FDEGKTSDV 175
Query: 179 HEVLDK 184
+ +K
Sbjct: 176 YSKKEK 181
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + F+ S L+ +Y V DS C + + ++W SII C
Sbjct: 254 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDS-CRVFYMLPQHDGISWNSIIAGC 312
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
QNG+ E L F +M+ + + P+H F S++ +C L G+ +H IIR+
Sbjct: 313 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRM 366
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG+ ++L M + + PD SVL V+ G+ +H
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IR G D D++ ++L++MYA+ +D
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVD 288
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 136/186 (73%), Gaps = 7/186 (3%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M +T+ L LL+NP S+K+KSQAKQLHAQI +T P S L+S +L IY+N NL+HDSL
Sbjct: 1 MNTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ ++L +P +AWKSIIRC T +GL + SL+ F++M+ SG YPDHNVFPSVLKSCTL+
Sbjct: 60 LIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM 119
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMHIYDRFQGFGFNGGREASV 178
D RFGESVH CIIRLG+ DLYT NALMNMY++ ++ +++ Y + F+ G+ + V
Sbjct: 120 KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKV----FDEGKTSDV 175
Query: 179 HEVLDK 184
+ +K
Sbjct: 176 YSKKEK 181
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + F+ S L+ +Y V DS C + + ++W SII C
Sbjct: 254 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDS-CRVFYMLPQHDGISWNSIIAGC 312
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG+ E L F +M+ + + P+H F S++ +C L G+ +H IIR D ++
Sbjct: 313 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 372
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRFQ 166
+ +AL++MYA+ N+ I+D+ +
Sbjct: 373 FIASALVDMYAKCGNIRTARWIFDKME 399
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG+ ++L M + + PD SVL V+ G+ +H
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IR G D D++ ++L++MYA+ +D
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVD 288
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 14/200 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+N LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 5 TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 63
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +TL P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLK+C +L+
Sbjct: 64 LFNTLHFP-PALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY+ + + +G + +
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYS-----------KLRFLKKSGRQRLGASQ 171
Query: 181 VLDKIPERNGNVELSSGLAG 200
VLD++ ER +V +S L G
Sbjct: 172 VLDEMTERTRSVRTASVLVG 191
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S+ K++H + ++ S L+ +Y V DS + TL T ++W SII
Sbjct: 317 SKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVF-TLLTERDGISWNSIIAG 375
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C QNGL E L F +M+ + + P F S++ +C L G+ +H I R G D +
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ 166
++ ++L++MYA+ N+ I+DR +
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMR 463
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +NGL E+LT M G+ + PD SVL VD G+ +H C
Sbjct: 266 VSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGC 325
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
IR G+D ++Y ++L++MYA+ R + V + ER+G
Sbjct: 326 SIRQGLDAEVYVASSLIDMYAKCT------------------RVVDSYRVFTLLTERDG- 366
Query: 192 VELSSGLAGC 201
+ +S +AGC
Sbjct: 367 ISWNSIIAGC 376
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 136/199 (68%), Gaps = 14/199 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+ LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 3 TSTEALVKALLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +T+ P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLKSC LL+
Sbjct: 62 LFNTIHFP-PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY++ + ++ +G + E
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEE-----------SGRQRLGAGE 169
Query: 181 VLDKIPERNGNVELSSGLA 199
V D++ ER +V S L+
Sbjct: 170 VFDEMTERTRSVRTVSVLS 188
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S+ K++H + ++ S L+ +Y V DS C + TL T ++W SII
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADS-CRVFTLLTERDGISWNSIIAG 314
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C QNGL E L F +M+ + + P F S++ +C L G+ +H I R G D +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ 166
++ ++L++MYA+ N+ I+DR +
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMR 402
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +NGL E+L M G+ + PD SVL VD G+ +H C
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
IR G+D D+Y ++L++MYA+ R A V + ER+G
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCT------------------RVADSCRVFTLLTERDG- 305
Query: 192 VELSSGLAGC 201
+ +S +AGC
Sbjct: 306 ISWNSIIAGC 315
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 136/199 (68%), Gaps = 14/199 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+ LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 3 TSTEALVKALLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +T+ P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLKSC LL+
Sbjct: 62 LFNTIHFP-PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY++ + ++ +G + E
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEE-----------SGRQRLGAGE 169
Query: 181 VLDKIPERNGNVELSSGLA 199
V D++ ER +V S L+
Sbjct: 170 VFDEMTERTRSVRTVSVLS 188
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S+ K++H + ++ S L+ +Y V DS C + TL T ++W SII
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADS-CRVFTLLTERDGISWNSIIAG 314
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C QNGL E L F +M+ + + P F S++ +C L G+ +H I R G D +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ 166
++ ++L++MYA+ N+ I+DR +
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMR 402
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +NGL E+L M G+ + PD SVL VD G+ +H C
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
IR G+D D+Y ++L++MYA+ R A V + ER+G
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCT------------------RVADSCRVFTLLTERDG- 305
Query: 192 VELSSGLAGC 201
+ +S +AGC
Sbjct: 306 ISWNSIIAGC 315
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH I + + F+ S L+ +Y + + + D ++ V+W ++I C
Sbjct: 359 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMVSWTAMIMGCA 417
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G +++ F +M G+ P+H F +VL +C+
Sbjct: 418 LHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS 452
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 113/159 (71%), Gaps = 3/159 (1%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ TL++P P +AWKS+IRC T L +L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LVFKTLESP-PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+D RFGESVH I+RLG+D DLYT NALMNMY++ +D
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGID 157
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + + + ++ S L+ +Y + DS + L ++W S++
Sbjct: 224 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAGY 282
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG E+L F +M+ + V P F SV+ +C L G+ +H ++R G ++
Sbjct: 283 VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNI 342
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRF 165
+ +AL++MY++ N+ I+DR
Sbjct: 343 FIASALVDMYSKCGNIQAARKIFDRM 368
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ ++I Q+G+ ++L M S + PD SVL + VD G+ +H
Sbjct: 172 VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD------MHIYDR 164
+IR G+D D+Y ++L++MYA+S ++ H+Y R
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRR 270
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 18/192 (9%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L TLK+P P +AWKS+IRC T L ++L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LLFKTLKSP-PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+D RFGESVH I+RLG+D DLYT NALMNMYA+ M G + SV
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM---------------GSKISVG 163
Query: 180 EVLDKIPERNGN 191
V D++P+R N
Sbjct: 164 NVFDEMPQRTSN 175
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + + + ++ S L+ +Y + DS + L ++W S++
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-DGISWNSLVAGY 318
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG E+L F +M+ + V P F SV+ +C L G+ +H ++R G ++
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRF 165
+ +AL++MY++ N+ I+DR
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRM 404
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +II Q+G+ ++L M + + PD SVL + VD G+ +H
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G+D D+Y ++L++MYA+S ++
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIE 294
>gi|255575883|ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531751|gb|EEF33573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 393
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 17/121 (14%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M SG +PDHNVFPSV+KSCTLL+DF+ GESVH CIIRLGVD+DLYT NALMNMYA+ Q+
Sbjct: 1 MRASGKHPDHNVFPSVIKSCTLLLDFKLGESVHGCIIRLGVDVDLYTGNALMNMYAKFQS 60
Query: 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRVVSAGHDAD 216
+D+ +R H++LD++P+R EL ++FEK ++ +
Sbjct: 61 LDLCSSERI-----------ITHKLLDEMPDRICYDEL------LHEFEKGIMGMHQNVS 103
Query: 217 L 217
L
Sbjct: 104 L 104
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + F+ S L+ +Y V DSL + +L ++W SII C
Sbjct: 205 KGKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVEDSLRVF-SLLPRRDDISWNSIIAGC 263
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L E L F +M+ + V P F S+L +C L G +H I+R+ D ++
Sbjct: 264 VQNSLFDEGLRFFRQMLKANVKPRQVSFSSILPACAHLTTLNLGRQLHGYILRVRFDNNV 323
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRFQ 166
+ ++L++MYA+ N+ + I+D+ +
Sbjct: 324 FIASSLVDMYAKCGNVKVARWIFDKMK 350
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I NG+ E+L M + PD SVL V+ G+ +H
Sbjct: 153 VSWNTVIAGNAHNGMHEEALVMVREMGNVNLKPDSFTLSSVLPIFAEYVNVDKGKEIHGY 212
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IR G+D D++ ++L++MYA+
Sbjct: 213 AIRHGLDGDVFIGSSLIDMYAK 234
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 16/136 (11%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M+ SG YPDHNVFPSVLKSCTL+ D RFGESVH CIIRLG+ DLYT NALMNMY++ +
Sbjct: 1 MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60
Query: 157 MDMHIYDRFQGFGFNGG----RE----ASVHEVLDKIPER------NGNV-ELSSGLAGC 201
++ RF GG RE ++ H++ ++ ER NG++ ++S+ L
Sbjct: 61 LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120
Query: 202 NKFEKRVVSAGHDADL 217
N + K+V G +D+
Sbjct: 121 NTY-KKVFDEGKTSDV 135
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + F+ S L+ +Y V DS C + + ++W SII C
Sbjct: 214 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDS-CRVFYMLPQHDGISWNSIIAGC 272
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG+ E L F +M+ + + P+H F S++ +C L G+ +H IIR D ++
Sbjct: 273 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 332
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRFQ 166
+ +AL++MYA+ N+ I+D+ +
Sbjct: 333 FIASALVDMYAKCGNIRTARWIFDKME 359
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG+ ++L M + + PD SVL V+ G+ +H
Sbjct: 162 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 221
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IR G D D++ ++L++MYA+ +D
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVD 248
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 32/154 (20%)
Query: 1 MTSTKTLI-NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S++ ++ +LL+NP ++ KQLHAQI KT
Sbjct: 1 MSSSQNVMRSLLRNPNTVVPTCHVKQLHAQIVKT-------------------------- 34
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
T TP +AW II+C +GLL SL F + G+ PD ++FPS+L++ TL
Sbjct: 35 ----TKATP-HSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLF 89
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F +S+HA +IRLG DLYT NALMNMY++
Sbjct: 90 KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSK 123
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++ K++H + F+ S L+ +Y V S+C L + ++W SII
Sbjct: 216 TKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLL-SNRDAISWNSIIAG 274
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C QNG + L F RM+ V P F SV+ +C L G+ +HA IIRLG D +
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334
Query: 141 LYTNNALMNMYAQSQNMDMHIY 162
+ ++L++MYA+ N+ M Y
Sbjct: 335 KFIASSLLDMYAKCGNIKMARY 356
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG+ E+L M + PD S+L T + G+ +H
Sbjct: 165 VSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGY 224
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
IR G D D++ ++L++MYA+ +++ +
Sbjct: 225 AIRHGFDKDVFIGSSLIDMYAKCTQVELSV 254
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 11/191 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDS 58
T +K L +S+ T+ QAKQLHA I KT L ++ ++S +N NL+ S
Sbjct: 8 TISKILRKTPNKTLSVSTR-QAKQLHAHIVKTKGTLHSDNILVLSLY----SNLNLLQHS 62
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L L ++L +P PP+AW SII+C T + LL S + F M V P+ +VFPS+LK+ TL
Sbjct: 63 LHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTL 122
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L + S+HAC +RLG+D DLY NAL+N YA+ N ++D F G +G V
Sbjct: 123 LKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAG-KVFDVFPKRGESG--IDCV 179
Query: 179 HEVLDKIPERN 189
+V D +P R+
Sbjct: 180 KKVFDMMPVRD 190
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++ K++H + F+ S L+ +Y N + SL L ++W SII
Sbjct: 244 NKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK-DAISWNSIIAG 302
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C QNG L F RM+ V P F SV+ +C L G +H CI+RLG D +
Sbjct: 303 CVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDN 362
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDR 164
+ ++L++MYA+ N+ M +++DR
Sbjct: 363 EFIASSLVDMYAKCGNIKMARYVFDR 388
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I QNG+ VE+L M +G + PD S+L VD G+ +H
Sbjct: 192 VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG 251
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+R G D D++ ++L++MYA+ ++
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLE 279
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL K+ SQ KQLHAQ+ + L+SRL+ Y N NL+ D+ + ++ T
Sbjct: 86 SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNT- 144
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +NG VE+L + M+ + PD +PSVLK+C +DF G V
Sbjct: 145 LDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEV 204
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYD 163
H I ++ L+ +NAL++MY + +++ H++D
Sbjct: 205 HRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFD 241
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL + +K+ ++ +QLH I L+ +L+ Y+ FNL+ D+ + +
Sbjct: 105 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN-SNI 163
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P W +I +NG ++L+ + +M+ G+ PD+ +PSVLK+C +D FG+ V
Sbjct: 164 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 223
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H I + L +NAL++MY + G+ ++ DKIPER
Sbjct: 224 HESINASRIKWSLIVHNALISMYGKC------------------GKVGIARDLFDKIPER 265
Query: 189 NG 190
+
Sbjct: 266 DA 267
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LL L + W SII C E+ M+ G+ P++ SVL C +
Sbjct: 393 LLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVA 452
Query: 121 DFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQS 154
+ + G+ H + R D L NAL++MYA+S
Sbjct: 453 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 487
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL + +K+ ++ +QLH I L+ +L+ Y+ FNL+ D+ + +
Sbjct: 179 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN-SNI 237
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P W +I +NG ++L+ + +M+ G+ PD+ +PSVLK+C +D FG+ V
Sbjct: 238 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 297
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H I + L +NAL++MY + G+ ++ DKIPER
Sbjct: 298 HESINASRIKWSLIVHNALISMYGKC------------------GKVGIARDLFDKIPER 339
Query: 189 NG 190
+
Sbjct: 340 DA 341
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LL L ++W SII C E+ M+ SG+ P++ SVL C +
Sbjct: 467 LLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVA 526
Query: 121 DFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQS 154
+ + G+ H + R D L NAL++MYA+S
Sbjct: 527 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 561
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 4/155 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++ +LL + ++K+ Q KQLHA N L+ +L+ Y++F+L+ D+ + T+
Sbjct: 43 SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTI--TV 100
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ P+ W +I NGL E+L+ + M+ GV PD+ +PSVLK+C +D F
Sbjct: 101 NSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDF 160
Query: 125 GESVHACI-IRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH I G +LY +N+L++MY + +D
Sbjct: 161 GREVHESINAAYGHRWNLYVHNSLVSMYGKFGELD 195
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y+ + + L ++KT + W S++ T E+ F M+ SG+ P
Sbjct: 320 LITMYSRCKDLRHADILFKSIKTKSL-TTWNSMLSGYTHMDRSEEASFLFREMLFSGIEP 378
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVDLDLYTNNALMNMYAQS 154
++ S+L C + + + G+ H I+R G + L N+L+ MYA+S
Sbjct: 379 NYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARS 429
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPPVAW 74
SQ KQLHAQ +T PN+ FL SR+L +F+ +HD + + ++ P W
Sbjct: 40 SQLKQLHAQTIRTTSSHHPNTFFLYSRIL----HFSSLHDLRYAFRVFHQIENPNS-FMW 94
Query: 75 KSIIRCCTQNGLLVE-SLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++IR C ++ + ++ + RM+ G V D + FP VLK+C L GE +HA I
Sbjct: 95 NALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQI 154
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
++LG D D+Y NN+L++ YA +D ++DR
Sbjct: 155 LKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDR 188
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPPVAW 74
SQ KQLHAQ +T PN+ FL SR+L +F+ +HD + + ++ P W
Sbjct: 40 SQLKQLHAQTIRTTSSHHPNTFFLYSRIL----HFSSLHDLRYAFRVFHQIENPNS-FMW 94
Query: 75 KSIIRCCTQNGLLVE-SLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++IR C ++ + ++ + RM+ G V D + FP VLK+C L GE +HA I
Sbjct: 95 NALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQI 154
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
++LG D D+Y NN+L++ YA +D ++DR
Sbjct: 155 LKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDR 188
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+K+ SQ KQLH I ++ +L+ Y NF+L+ D+ + + P+ W
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITEN-SNILHPLPWNL 164
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I +NGL E+L+ + +M G+ PD +PSVLK+C +D FG+ +HA I
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224
Query: 137 VDLDLYTNNALMNMYAQSQNM 157
+ +L+ +N+L++MYA++ +
Sbjct: 225 LGWNLFVHNSLVSMYAKTGEL 245
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++H ++ + + L+ +Y+ + + L + +T + W S++ T
Sbjct: 349 GREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTK-NIITWNSMLSGYT 407
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDL 141
E+ F M+ SG+ P++ S+L C + + + G+ H I+ R G L
Sbjct: 408 HMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYL 467
Query: 142 YTNNALMNMYAQSQNM--DMHIYDRFQ------------GFGFNG-GREASVHEVLDKIP 186
N+L++MYA+S + ++D G+G G GREA ++ D++
Sbjct: 468 LLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREAL--KLFDEMK 525
Query: 187 ERN---GNVELSSGLAGCN 202
+R+ +V + + L+ C+
Sbjct: 526 KRHIKPDHVTMVAVLSACS 544
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W +I C Q+G E+L M G+ D L +C+ + + G +H
Sbjct: 296 ITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGS 355
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
IR D NAL+ MY++ + + H Y+ FQ
Sbjct: 356 AIRSFYDGVDNVKNALITMYSRCKYLR-HAYNLFQ 389
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPPVAW 74
SQ KQLHAQ +T PN+ FL SR+L +F+ +HD + + ++ P W
Sbjct: 40 SQLKQLHAQTIRTTSSHHPNTFFLYSRIL----HFSSLHDLRYAFRVFHQIENPNS-FMW 94
Query: 75 KSIIRCCTQNGLLVE-SLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++IR C ++ + ++ + RM+ G V D + FP VLK+C L GE +HA I
Sbjct: 95 NALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQI 154
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
++LG D B+Y NN+L++ YA +D ++DR
Sbjct: 155 LKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDR 188
>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 812
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL ++K+ SQ KQ+HA I + L+S+L+ Y + +L+ D+ + +
Sbjct: 97 HLLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAEC-SNS 155
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N L ++++ + RM+ GV PD +PSVLK+C L+D+ G +V
Sbjct: 156 FDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAV 215
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
H I + L+ +NAL+ MY +
Sbjct: 216 HKAIQESSIKWSLFVHNALVFMYGR 240
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDS------LCL 61
+ LL SI+T KQ+HA I KT N+ F +S+L+ F+ V S + L
Sbjct: 33 LKLLSKCQSIRT---FKQIHAHIIKTGLHNTLFALSKLI----EFSAVSRSGDISYAISL 85
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++++ P + W S+IR + + +L FVRMI SGV P+ FP +LKSC L
Sbjct: 86 FNSIEEPNLFI-WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS 144
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +HA +++LG D++ + +L+NMYAQS M+
Sbjct: 145 AHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMN 181
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVHDSLCLLD 63
LLK+ + + + KQ+HA + K + F+ + L+ +Y NN LV D D
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
Query: 64 TLKTPA------------------------PPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
+ A V+W ++I Q G E+L F M
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ V P+ + SVL +C G S+ + I G+ +L NAL++MY++ ++
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I T E+L F M+ SGV P F S+L SC L G+ +HA
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY 387
Query: 132 I 132
I
Sbjct: 388 I 388
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ P S+ + Q H QI K +L LL +Y N + ++ L
Sbjct: 634 TIVEACHKPESL---TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSE 690
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L +P V W ++ +QNG E+L + M GV PD F +VL+ C++L R
Sbjct: 691 LSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLRE 750
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G ++H+ I L DLD T+N L++MYA+ +M
Sbjct: 751 GRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL + Q H+ I K + F+ + L+ +Y + D+ + + +
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +II Q+ E+ F RM G+ D S LK+CT + G
Sbjct: 490 -CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQG 548
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VH ++ G+D DL+T ++L++MY++
Sbjct: 549 KQVHCLSVKCGLDRDLHTGSSLIDMYSK 576
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ K ++ ++ S L+ +Y+ + + + + L+ V W ++IR NG
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEK-NDVFWNAMIRGYAHNG 407
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ + F+ M SG D F S+L +C D G H+ II+ + +L+ N
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 146 ALMNMYAQSQNMD--MHIYDR 164
AL++MYA+ ++ I++R
Sbjct: 468 ALVDMYAKCGALEDARQIFER 488
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ + G + L FV + + ++P+ F VL +C + FG +H +
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
I++G++ + Y AL++MYA+
Sbjct: 187 IKMGLERNSYCGGALVDMYAK 207
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 49 YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
Y + D+ L + +P VAW +I + G ++ F M S V +
Sbjct: 271 YIRLGKLKDARLLFGEMSSP-DVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRST 329
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
SVL + ++ + G VHA I+LG+ ++Y ++L++MY++ + M+
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + + + + +H+ IF + L+ +Y + S + D +
Sbjct: 734 TFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEM 793
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + V+W S+I +NG ++L F M S + PD F VL +C+
Sbjct: 794 RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ P S+ + Q H QI K +L LL +Y N + ++ L
Sbjct: 634 TIVEACHKPESL---TLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSE 690
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L +P V W ++ +QNG E+L + M G PD F +VL+ C++L R
Sbjct: 691 LSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLRE 750
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G ++H+ I L DLD T+N L++MYA+ +M
Sbjct: 751 GRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ K ++ ++ S L+ +Y+ + + + + L+ V W ++IR NG
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE-ERNDVLWNAMIRGYAHNG 407
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ + F+ M SG D F S+L +C + D G H+ II+ + +L+ N
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGN 467
Query: 146 ALMNMYAQ 153
AL++MYA+
Sbjct: 468 ALVDMYAK 475
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL Q H+ I K + F+ + L+ +Y + D+ + + +
Sbjct: 430 TFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHM 489
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II Q+ E+ F+RM G+ D S LK+CT + G
Sbjct: 490 -CDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQG 548
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VH ++ G+D L+T ++L++MY++
Sbjct: 549 KQVHCLSVKCGLDRVLHTGSSLIDMYSK 576
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ P+P V AW +I + G + ++ F+ M S V + SVL + ++ +
Sbjct: 286 EMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDL 345
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA I+LG+ ++Y ++L++MY++ + M+
Sbjct: 346 GLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ + G + L FV + + ++P+ F VL + + FG +H +
Sbjct: 127 AWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSM 186
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
I++G++ + Y AL++MYA+
Sbjct: 187 IKMGLERNSYCGGALVDMYAK 207
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + + + + +H+ IF + L+ +Y + S + D +
Sbjct: 734 TFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEM 793
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + V+W S+I +NG ++L F M S + PD F VL +C+
Sbjct: 794 RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT + QLH+ I KT + ++ LIS+ +F ++ ++ L + D L AP AW SI
Sbjct: 13 KTTTHLLQLHSLILKTAKDHNPDLISQFIFSISSVSIEFARL-VFDRLPIRAPIFAWNSI 71
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
IR T++ + +E++ F +M G+ PD+ +P V+K+C + G ++H+ I++ G
Sbjct: 72 IRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGF 131
Query: 138 DLDLYTNNALMNMYA 152
D D Y N L+ MYA
Sbjct: 132 DSDRYVGNTLLRMYA 146
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H+ I K + R++ + LL +Y N N V + + + + T V+W S+I
Sbjct: 122 MHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEM-TVRDVVSWSSMIAGYVACN 180
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
++L F M+ + P+ S+L +CT L++ GES+H+ II + LD+
Sbjct: 181 CQADALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGT 240
Query: 146 ALMNMYAQSQNMD 158
A++ MY++ +++
Sbjct: 241 AILEMYSKCGHIE 253
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIRC 80
++Q+H+QI T S FL +R++ +Y F LV D+ + + ++ + + W SI+R
Sbjct: 50 SQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRA 109
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+G E+L + RM GV D FP V+++C L+ + SVH ++ +G +
Sbjct: 110 NVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWN 169
Query: 141 LYTNNALMNMYAQSQNMD 158
L+ N LM MY + MD
Sbjct: 170 LHVGNELMGMYGKIGRMD 187
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I G E+L F RM + V + SVL C L G +H
Sbjct: 377 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGH 436
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
++R +D ++ N L+NMY +S
Sbjct: 437 VVRSLMDGNILVGNGLINMYTKS 459
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S++ + G VE++ F RM G+ VL L F G+ +H
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + L+ N+L+ +Y + N++
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVN 323
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T+ L+ LL+ ++ K+ Q K +H ++ N FL L+ +Y + +L + C+ D
Sbjct: 3 TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFD 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDF 122
++ P W ++ T+N + VE+L F +++ + PD +PSVLK+C L +
Sbjct: 63 NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKY 122
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
G+ +H C+++ G+ +D+ ++L+ MYA+ + I+
Sbjct: 123 VLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIW 162
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
K +H + KT + S L+ +Y N ++ L + + P VA W ++I C
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEM--PEKDVACWNTVISCY 182
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q+G E+L F M G P+ + + SC L+D G +H +I G LD
Sbjct: 183 YQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS 242
Query: 142 YTNNALMNMYAQSQNMDMHI 161
+ ++AL++MY + +++M I
Sbjct: 243 FISSALVDMYGKCGHLEMAI 262
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I G L E+L F M S V PD F SVL +C+ L GE +H
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNL 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II +D + AL++MYA+ +D
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVD 461
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + +++H I + N+ ++ LL +Y V ++ + L
Sbjct: 411 TFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCL 470
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G +L F M+ S + PD F ++L +C
Sbjct: 471 -PKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACG-------- 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD Y N ++N+Y ++ Y GR +E+L +
Sbjct: 522 ---HAGL----VDEGCYYFNQMVNVYGIIPRVEH--YSCLIDLLGRAGRLHEAYEILQQN 572
Query: 186 PERNGNVELSSGLAGCNKFEKRV 208
PE +VEL S L + + +
Sbjct: 573 PEIRDDVELLSTLFSACRLHRNI 595
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIRC 80
++Q+H+QI T S FL +R++ +Y F LV D+ + + ++ + + W SI+R
Sbjct: 50 SQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRA 109
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+G E+L + RM GV D FP V+++C L+ + SVH ++ +G +
Sbjct: 110 NVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWN 169
Query: 141 LYTNNALMNMYAQSQNMD 158
L+ N LM MY + MD
Sbjct: 170 LHVGNELMGMYGKIGRMD 187
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I G E+L F RM + V + SVL C L G +H
Sbjct: 377 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGH 436
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
++R +D ++ N L+NMY +S
Sbjct: 437 VVRSLMDGNILVGNGLINMYTKS 459
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S++ + G VE++ F RM G+ VL L F G+ +H
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + L+ N+L+ +Y + N++
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVN 323
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIRC 80
++Q+H+QI T S FL +R++ +Y F LV D+ + + ++ + + W SI+R
Sbjct: 888 SQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRA 947
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+G E+L + RM GV D FP V+++C L+ + SVH ++ +G +
Sbjct: 948 NVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWN 1007
Query: 141 LYTNNALMNMYAQSQNMD 158
L+ N LM MY + MD
Sbjct: 1008 LHVGNELMGMYGKIGRMD 1025
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I G E+L F RM + V + SVL C L G +H
Sbjct: 1215 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGH 1274
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
++R +D ++ N L+NMY +S
Sbjct: 1275 VVRSLMDGNILVGNGLINMYTKS 1297
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S++ + G VE++ F RM G+ VL L F G+ +H
Sbjct: 1075 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 1134
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + L+ N+L+ +Y + N++
Sbjct: 1135 VVKGGFENYLFVKNSLICLYGKHGNVN 1161
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT KQ+H+QI KT N+ F +S+L+ + + +L + +L L T++ P V W
Sbjct: 39 KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSY-ALSLFKTIRNPNH-VIW 96
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IR + + +L +V MI SG P+ FPS+ KSCT + G+ VHA +++
Sbjct: 97 NHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLK 156
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG++ + + + +L+NMYAQ+ +
Sbjct: 157 LGLEHNAFVHTSLINMYAQNGEL 179
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN------NFNLVHDSL 59
T ++ K+ I+ + KQ+HA + K ++ F+ + L+ +Y N LV D
Sbjct: 130 TFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKS 189
Query: 60 CLLDTLKTPA------------------------PPVAWKSIIRCCTQNGLLVESLTCFV 95
+ D + A V+W ++I Q+G + E++ F
Sbjct: 190 SMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFE 249
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLL-VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
M + V P+ + SVL +C + G V + I G+ ++ N L++MY +
Sbjct: 250 EMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309
Query: 155 QNMD 158
+++
Sbjct: 310 GDLE 313
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L +S + +++HA + KT +L +RL+ +YN + D+ +LD +
Sbjct: 15 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE- 73
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I +Q G E+L FV M+ SG P+ F +VL SCT F+ G +
Sbjct: 74 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H+ +I+ + ++ ++L++MYA++ G+ V D +PER
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKA------------------GKICEARRVFDGLPER 175
Query: 189 N 189
+
Sbjct: 176 D 176
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ + KT + F+ S LL +Y + ++ + D L V+ +II
Sbjct: 130 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPE-RDVVSCTAIISGYA 188
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F R+ G+ ++ + SVL + + L G VH+ ++R + +
Sbjct: 189 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVV 248
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
N+L++MY++ ++ Y R + D +PER
Sbjct: 249 LQNSLIDMYSKCGSL---TYSR---------------RIFDSMPERT 277
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L +S + +++HA + KT +L +RL+ +YN + D+ +LD +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE- 540
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I +Q G E+L FV M+ SG P+ F +VL SCT F+ G +
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H+ +I+ + ++ ++L++MYA++ G+ V D +PER
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKA------------------GKICEARRVFDGLPER 642
Query: 189 N 189
+
Sbjct: 643 D 643
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ + KT + F+ S LL +Y + ++ + D L V+ +II
Sbjct: 597 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPE-RDVVSCTAIISGYA 655
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F R+ G+ ++ + SVL + + L G VH+ ++R + +
Sbjct: 656 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVV 715
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
N+L++MY++ ++ Y R + D +PER
Sbjct: 716 LQNSLIDMYSKCGSL---TYSR---------------RIFDSMPER 743
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ KT N+ + +S+LL + +F+ + ++ + DT++ P + W
Sbjct: 13 KTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLI-W 71
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V M+ G+ P+ FP +LKSC F+ G+ +H +++
Sbjct: 72 NTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLK 131
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHE 180
G DLDLY + +L++MY Q+ ++ + D+ G+ G E S H+
Sbjct: 132 FGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIE-SAHK 190
Query: 181 VLDKIPERN 189
+ D+IP ++
Sbjct: 191 MFDEIPVKD 199
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W + I + G E+L F +M+ + V PD + +VL +C G VH+
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSW 260
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NAL+++Y++ ++
Sbjct: 261 INDHGFGXNLKIVNALIDLYSKCGELE 287
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L VS + + +++H + KT S +L +RL+ +YN + + D+ + D +
Sbjct: 67 SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQ- 125
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I +Q G E+L FV M+ S P+H F ++L SC + F G +
Sbjct: 126 RNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 185
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H+ I+ + ++ ++L++MYA+S GR H V +PER
Sbjct: 186 HSIAIKRNYESHMFVGSSLLDMYAKS------------------GRICDAHGVFHCLPER 227
Query: 189 N 189
+
Sbjct: 228 D 228
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ K + F+ S LL +Y + D+ + L VA +II
Sbjct: 182 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL-PERDVVACTAIISGYA 240
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F ++ G+ + + SVL + + L G+ VH+ ++R G +
Sbjct: 241 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV 300
Query: 143 TNNALMNMYAQSQNM 157
N+L++MY++ N+
Sbjct: 301 LLNSLIDMYSKCGNV 315
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 24 KQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPPVAWKSIIR 79
KQ+HA I KT+ P+++ IS L +L D +L LL L+TP P+ + +IIR
Sbjct: 54 KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPL-YNAIIR 112
Query: 80 -CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
T N +E L + +M+ G+ PD+ P VLK+C R GE VH I++G+
Sbjct: 113 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 172
Query: 139 LDLYTNNALMNMYA 152
D+Y +N LM MYA
Sbjct: 173 SDVYVSNTLMRMYA 186
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I Q G ESL F +M GV PD +VL SC L G+ VHA
Sbjct: 272 VSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ R + D + NAL++MYA+ ++D
Sbjct: 332 LDRNQIRADGFIGNALVDMYAKCGSID 358
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 24 KQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPPVAWKSIIR 79
KQ+HA I KT+ P+++ IS L +L D +L LL L+TP P+ + +IIR
Sbjct: 39 KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPL-YNAIIR 97
Query: 80 -CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
T N +E L + +M+ G+ PD+ P VLK+C R GE VH I++G+
Sbjct: 98 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 157
Query: 139 LDLYTNNALMNMYA 152
D+Y +N LM MYA
Sbjct: 158 SDVYVSNTLMRMYA 171
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LK + + +++H Q K + ++ + L+ +Y +++ + + DT
Sbjct: 127 TIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDT- 185
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+P V+W ++I+ + G E + F M G + D VL SC L D R
Sbjct: 186 -SPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRL 244
Query: 125 GESVHACIIR-LGVDLDLYTNNALMNMY 151
G +H IIR V+LD++ NAL++MY
Sbjct: 245 GRKLHRYIIRNSNVNLDVFVGNALVDMY 272
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I Q G ESL F +M GV PD +VL SC L G+ VHA
Sbjct: 294 VSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAY 353
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ R + D + NAL++MYA+ ++D
Sbjct: 354 LDRNQIRADGFIGNALVDMYAKCGSID 380
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89
+F + + +L Y++ + ++ L D + P V+W +++ Q G+ E
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP-DVVSWNALVSGYCQRGMFQE 132
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
S+ FV M GV PD F +LKSC+ L + G VHA ++ G+++D+ T +AL++
Sbjct: 133 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRV 208
MY + +++D F G +PERN V S +AGC + E+ V
Sbjct: 193 MYGKCRSLD-------DALCFFYG-----------MPERNW-VSWGSAIAGCVQNEQYV 232
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K + ++ S L+ +Y + DSL + + +
Sbjct: 491 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 550
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +GL VE+L F RM V P+H F +VL++C+
Sbjct: 551 EK-RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 601
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T LLK+ +++ S Q+HA KT LE + R S L+ +Y + D+LC
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVR-TGSALVDMYGKCRSLDDALCFFYG 209
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W S I C QN V L F+ M G+ + S +SC +
Sbjct: 210 MPE-RNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNT 268
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA I+ D A++++YA++ ++
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S ++ +Y ++ ++ L D + V+W +I+ + N + F M+
Sbjct: 424 FVASTVVDMYCKCGIIDEAQKLHDRIGGQQV-VSWNAILSGFSLNKESEAAQKFFSEMLD 482
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ PDH F +VL +C L G+ +H II+ + D Y ++ L++MYA+ +M
Sbjct: 483 MGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 540
>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 619
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 22/188 (11%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T + +LL+ + KT +QAKQLH +I T ++ F +++L+ IY + N + ++ L
Sbjct: 3 TLTHSFNSLLQ---ACKTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTL 59
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L + P A+ SI+ +++GL + + + + +GV PD VFP VLK+C L
Sbjct: 60 LHQISHP-NVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSR 118
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
F G VH ++ G + +L N++++MY++ G S +V
Sbjct: 119 FGSGRGVHKDVVVFGEESNLQVRNSVLDMYSKC------------------GDVGSARQV 160
Query: 182 LDKIPERN 189
D++ ER+
Sbjct: 161 FDEMSERD 168
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I GL+ +L CF M G GV D S+L C D R G+ +HA
Sbjct: 342 VTWNAMIFGLVDVGLVDLALDCFREMQGRGVGIDGRTISSILPVC----DLRCGKEIHAY 397
Query: 132 IIRLGVDLDLYTNNALMNMYA 152
+ + + NAL++MY+
Sbjct: 398 VRKCNFSGVIPVYNALIHMYS 418
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 22/169 (13%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ +HAQ+ KT N+ + +S+L+ + +F+ + ++ + +T++ P + W ++ R
Sbjct: 7 RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLI-WNTMFRG 65
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ V +L +V MI G+ P+ FP +LKSC F+ G+ +H +++LG DLD
Sbjct: 66 HALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLD 125
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LY + +L++MY Q+ GR H+V D+ P R+
Sbjct: 126 LYVHTSLISMYVQN------------------GRLEDAHKVFDESPHRD 156
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +V+ +C G VH+
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSW 248
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NAL+++Y++ ++
Sbjct: 249 IDDHGFGSNLKIVNALIDLYSKCGELE 275
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L VS + + +++H + KT S +L +RL+ +YN + + D+ + D +
Sbjct: 95 TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I +Q G E+L FV M+ S P+H F ++L SC + F G +
Sbjct: 155 NV-VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H+ I+ + ++ ++L++MYA+S GR H V +PER
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAKS------------------GRICDAHGVFHCLPER 255
Query: 189 N 189
+
Sbjct: 256 D 256
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ K + F+ S LL +Y + D+ + L VA +II
Sbjct: 210 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL-PERDVVACTAIISGYA 268
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F ++ G+ + + SVL + + L G+ VH+ ++R G +
Sbjct: 269 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV 328
Query: 143 TNNALMNMYAQSQNM 157
N+L++MY++ N+
Sbjct: 329 LLNSLIDMYSKCGNV 343
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + +S F +L+ Y++F SL + + W SIIR
Sbjct: 22 ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAF 81
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++NGL E+L + ++ S V PD FPSV+K+C L D G+ V+ I+ +G + DL
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 142 YTNNALMNMYAQ 153
+ NAL++MY++
Sbjct: 142 FVGNALVDMYSR 153
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y V DSL + ++ T V W ++I C + G L +M S V P
Sbjct: 449 LIDMYAKCGEVGDSLKIFSSMGT-GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVP 507
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D F L C L R G+ +H C++R G + +L NAL+ MY++
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII Q+G L+E++ F M+ DH + ++ T L D +FG+ +H+
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ G+ +DL +NAL++MYA+
Sbjct: 434 GIKSGICIDLSVSNALIDMYAK 455
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ K N+ + +S+L+ + +F + ++ + T++ P + W
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLI-W 102
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP VLKSC F+ G+ +H +++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLK 162
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LG DLDLY + +L++MY Q+ GR H+V DK P R+
Sbjct: 163 LGCDLDLYVHTSLISMYVQN------------------GRLEDAHKVFDKSPHRD 199
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +V+ +C G VH
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NAL+++Y++ ++
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELE 318
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 34/198 (17%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T L +LL+ + K K +HA + ++ + FL +RL+ Y N + S L
Sbjct: 3 TKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRL 62
Query: 62 LD---------------------------TLKTPAPP---VAWKSIIRCCTQNGLLVESL 91
D L P V+W ++I T+NG ++L
Sbjct: 63 FDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKAL 122
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
+ RM G P H SVL +C LVD G H I++G+D ++Y NAL+ MY
Sbjct: 123 GVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMY 182
Query: 152 AQSQNMDMHIYDRFQGFG 169
A+ + I D Q FG
Sbjct: 183 AKCRC----IGDAIQAFG 196
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + + +Q+HA K + +L S L+ +Y+ V + + D +
Sbjct: 421 TLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI 480
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S++ + N L E+ T F +M G++P + +VL C L G
Sbjct: 481 -AELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG 539
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH+ I R G D + +AL++MY++ ++D
Sbjct: 540 RQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 572
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ + SQ +Q+H+QI + N F+ S L+ +Y+ V + + D + V W
Sbjct: 533 LSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM-LGKNTVTWNE 591
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+I QNG E++ + MIGSG PD F +VL +C+
Sbjct: 592 MIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACS 632
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + +P+ +W +I+ +QN E++ F M V+PD +L S ++
Sbjct: 375 MFDGMSSPSLS-SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMM 433
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
G VHA + D+Y + L+ MY++ ++M I+DR
Sbjct: 434 LLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDR 479
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H K N+ ++ + LL +Y + D++ +
Sbjct: 139 TLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDV 198
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-------- 117
P V++ +++ + + E+ F M+ + ++ D SVL C+
Sbjct: 199 PEP-NEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFG 257
Query: 118 ------LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+L G+ VH I+ G + DL+ NN+L++MYA++ NMD
Sbjct: 258 LHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMD 304
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P V ++ S+I
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSI--PDPTVYSFSSLIYA 90
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+D
Sbjct: 91 LTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMD 150
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRF 165
+ +L +MY + M ++DR
Sbjct: 151 AFVQGSLFHMYMRCGRMGDARKVFDRM 177
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII C QNG +E+L F M +GV P+ PS+L +C + G S H
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGF 413
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+R+ + D++ +AL++MYA+ + M
Sbjct: 414 AVRVHLLDDVHVGSALIDMYAKCGRIKM 441
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL-KTPAPP--VAWKSIIRCCTQNG 85
++F + S LL Y + + + +L + K+ P V+W I+ ++G
Sbjct: 172 KVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSG 231
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F +M G PD SVL S + G +H +I+ G+ D +
Sbjct: 232 YHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVIS 291
Query: 146 ALMNMYAQSQNMD--MHIYDRFQ 166
A+++MY +S ++ + ++D F+
Sbjct: 292 AMLDMYGKSGHVYGIIKLFDEFE 314
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89
+F + + +L Y++ + ++ L D + P V+W +++ Q G+ E
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP-DVVSWNALVSGYCQRGMFQE 174
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
S+ FV M GV PD F +LKSC+ L + G VHA ++ G+++D+ T +AL++
Sbjct: 175 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 234
Query: 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRV 208
MY + +++D F G +PERN V + +AGC + E+ V
Sbjct: 235 MYGKCRSLD-------DALCFFYG-----------MPERNW-VSWGAAIAGCVQNEQYV 274
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK ++++ +H ++ K+ + F+ S ++ +Y ++ ++ L D +
Sbjct: 496 TYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 555
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I+ + N E+ F M+ G+ PDH F +VL +C L G
Sbjct: 556 GGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 614
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H II+ + D Y ++ L++MYA+ +M
Sbjct: 615 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 646
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+H K+ + + +L +Y + ++ + +K V+W +II
Sbjct: 411 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAAL 469
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG +++ F M+ G+ PD + SVLK+C L +G VH +I+ G+ D
Sbjct: 470 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDA 529
Query: 142 YTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ + +++MY + +D ++DR G
Sbjct: 530 FVASTVVDMYCKCGIIDEAQKLHDRIGG 557
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K + ++ S L+ +Y + DSL + + +
Sbjct: 597 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 656
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +GL VE+L F RM V P+H F +VL++C+
Sbjct: 657 EK-RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 707
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T LLK+ +++ S Q+HA KT LE + R S L+ +Y + D+LC
Sbjct: 193 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVR-TGSALVDMYGKCRSLDDALCFFYG 251
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W + I C QN V L F+ M G+ + S +SC +
Sbjct: 252 MPE-RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNT 310
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA I+ D A++++YA++ ++
Sbjct: 311 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 343
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S + + ++ ++ + +QLHA K + R + + ++ +Y N + D+
Sbjct: 290 VSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRA 349
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L + +++ + GL +E++ F MI S + D V +C
Sbjct: 350 FFGLPNHTVETS-NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 408
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
+ G+ VH I+ G D+D+ NNA++++Y + + + M Y FQG
Sbjct: 409 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-MEAYLIFQG 453
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL V+ K + +++HA I KT S +L +RL+ Y +L+ D+ + D + +
Sbjct: 481 LLNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEM-SER 539
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I ++ G E+L FVRM+ S + P+ +VL SCT G +H
Sbjct: 540 NVVSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIH 599
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ II+ D ++ ++L++MYA++ GR V + +PER+
Sbjct: 600 SLIIKCNYDSHIFVGSSLLDMYAKA------------------GRILEARMVFESLPERD 641
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + +Q+H+ I K + F+ S LL +Y + ++ + ++L
Sbjct: 578 TLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESL 637
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F R+ G+ + + SVL S + L G
Sbjct: 638 P-ERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLSGLAALDHG 696
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYD 163
+ VH+ ++R + + N++++MY++ S N I+D
Sbjct: 697 KQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFD 736
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 3 STKTLINLLKNPV-SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S +TL + + + S T +Q +LH+ I +S ++L+ Y +F S +
Sbjct: 70 SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSV 129
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +P+ V W SIIR T NGL E+L+ + + PD FPSV+ +C L+
Sbjct: 130 F-RLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 188
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
DF +S+H ++ +G DLY NAL++MY + ++D
Sbjct: 189 DFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLD 226
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDT 64
T + LL + K+LH + K + NS ++S L +Y + DSL + +
Sbjct: 477 TYVMLLSMSTQLGDLXLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFEN 535
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K + W +II C + L RM GV PD S+L C+LL R
Sbjct: 536 MKAR-DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 594
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H CI +LG++ D+ N L+ MY++
Sbjct: 595 GKEIHGCIFKLGLESDVPVGNVLIEMYSK 623
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L+ + + + +H I K + + LL +Y FN + D + D +
Sbjct: 277 TMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM 336
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I +Q GL ES+ F+ M+ PD S+L++C L D FG
Sbjct: 337 -VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFG 394
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ VH +I G + D +N L+NMYA+ N+
Sbjct: 395 KYVHDYMITSGYECDTTASNILINMYAKCGNL 426
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H ++ + ++ + L+ +Y FN + + + + + V+W S+I
Sbjct: 193 AKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISGYN 251
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E+L + R GV PD SVL++C L G+ +H I ++G+ D+
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311
Query: 143 TNNALMNMYAQ 153
NN L++MY +
Sbjct: 312 VNNGLLSMYCK 322
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNG E++ F +M+ + V PD + +L T L D G+ +H
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD 500
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+ ++G + ++ +N L++MYA+ M
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEM 526
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + K Q K++H IFK + + + L+ +Y+ + +S + +
Sbjct: 578 TMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM 637
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
KT V W ++I C G +++ F M +G+ PDH F +++ +C+
Sbjct: 638 KTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 688
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89
+F + + +L Y++ + ++ L D + P V+W +++ Q G+ E
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP-DVVSWNALVSGYCQRGMFQE 132
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
S+ FV M GV PD F +LKSC+ L + G VHA ++ G+++D+ T +AL++
Sbjct: 133 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRV 208
MY + +++D F G +PERN V + +AGC + E+ V
Sbjct: 193 MYGKCRSLD-------DALCFFYG-----------MPERNW-VSWGAAIAGCVQNEQYV 232
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK ++++ +H ++ K+ + F+ S ++ +Y ++ ++ L D +
Sbjct: 454 TYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I+ + N E+ F M+ G+ PDH F +VL +C L G
Sbjct: 514 GGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H II+ + D Y ++ L++MYA+ +M
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 604
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+H K+ + + +L +Y + ++ + +K V+W +II
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAAL 427
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG +++ F M+ G+ PD + SVLK+C L +G VH +I+ G+ D
Sbjct: 428 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDA 487
Query: 142 YTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ + +++MY + +D ++DR G
Sbjct: 488 FVASTVVDMYCKCGIIDEAQKLHDRIGG 515
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K + ++ S L+ +Y + DSL + + +
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +GL VE+L F RM V P+H F +VL++C+
Sbjct: 615 EK-RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 665
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T LLK+ +++ S Q+HA KT LE + R S L+ +Y + D+LC
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVR-TGSALVDMYGKCRSLDDALCFFYG 209
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W + I C QN V L F+ M G+ + S +SC +
Sbjct: 210 MPE-RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNT 268
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA I+ D A++++YA++ ++
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S + + ++ ++ + +QLHA K + R + + ++ +Y N + D+
Sbjct: 248 VSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRA 307
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L + +++ + GL +E++ F MI S + D V +C
Sbjct: 308 FFGLPNHTVETS-NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 366
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
+ G+ VH I+ G D+D+ NNA++++Y + + + M Y FQG
Sbjct: 367 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-MEAYLIFQG 411
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89
+F + + +L Y++ + ++ L D + P V+W +++ Q G+ E
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP-DVVSWNALVSGYCQRGMFQE 132
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
S+ FV M GV PD F +LKSC+ L + G VHA ++ G+++D+ T +AL++
Sbjct: 133 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 192
Query: 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRV 208
MY + +++D F G +PERN V + +AGC + E+ V
Sbjct: 193 MYGKCRSLD-------DALCFFYG-----------MPERNW-VSWGAAIAGCVQNEQYV 232
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK ++++ +H ++ K+ + F+ S ++ +Y ++ ++ L D +
Sbjct: 454 TYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I+ + N E+ F M+ G+ PDH F +VL +C L G
Sbjct: 514 GGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H II+ + D Y ++ L++MYA+ +M
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 604
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+H K+ + + +L +Y + ++ + +K V+W +II
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAAL 427
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG +++ F M+ G+ PD + SVLK+C L +G VH +I+ G+ D
Sbjct: 428 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDA 487
Query: 142 YTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ + +++MY + +D ++DR G
Sbjct: 488 FVASTVVDMYCKCGIIDEAQKLHDRIGG 515
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K + ++ S L+ +Y + DSL + + +
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +GL VE+L F RM V P+H F +VL++C+
Sbjct: 615 EK-RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 665
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T LLK+ +++ S Q+HA KT LE + R S L+ +Y + D+LC
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVR-TGSALVDMYGKCRSLDDALCFFYG 209
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W + I C QN V L F+ M G+ + S +SC +
Sbjct: 210 MPE-RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNT 268
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA I+ D A++++YA++ ++
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S + + ++ ++ + +QLHA K + R + + ++ +Y N + D+
Sbjct: 248 VSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRA 307
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L + +++ + GL +E++ F MI S + D V +C
Sbjct: 308 FFGLPNHTVETS-NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 366
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
+ G+ VH I+ G D+D+ NNA++++Y + + + M Y FQG
Sbjct: 367 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-MEAYLIFQG 411
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
S K+Q KQ+HA++ S FLI++L+ ++F + + + D L P P + W
Sbjct: 30 SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL--PRPQIFPW 87
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IIR ++N ++L + M + V PD FP +LK+C+ L + G VHA + R
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG D D++ N L+ +YA+ + +
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRL 170
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +HAQ+F+ F+ + L+ +Y + + + + L
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V+W +I+ QNG +E+L F M V PD SVL + T L D +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGF 170
G S+HA ++++G++++ +L MYA+ + ++D+ + G+
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 171 NG-GREA--SVHEVLDKIPERNGNVELSSGLAGCNK 203
NG REA HE+++K R + ++S ++ C +
Sbjct: 301 NGYAREAIDMFHEMINK-DVRPDTISITSAISACAQ 335
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L ++ Q + +HA + K LE LIS L +Y V + L D
Sbjct: 224 ALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS-LNTMYAKCGQVATAKILFDK 282
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K+P + W ++I +NG E++ F MI V PD S + +C +
Sbjct: 283 MKSP-NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------------FQGFGF 170
S++ + R D++ ++AL++M+A+ +++ ++DR G+G
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGL 401
Query: 171 NG-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
+G REA S++ +++ +V L CN
Sbjct: 402 HGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC- 60
+STK + LL+ S+K KQ HAQ+F T N+ F +SR+L ++ H+SL
Sbjct: 3 SSTKRCLVLLEKCKSMK---HLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTY 59
Query: 61 ---LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + ++ P + + ++I+ N +L FV+M+ S + PD+ P VLK+C
Sbjct: 60 ACRVFEQIQNPTVCI-YNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACG 118
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
D FG+ +H +LG+ D+Y N+LM MY
Sbjct: 119 TFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMY 152
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I QN ESL F M + + PD ++F S+L +C L G +H +
Sbjct: 207 WGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLN 266
Query: 134 RLG-VDLDLYTNNALMNMYAQSQNMDM 159
+L V L + + +L++MYA+ N+++
Sbjct: 267 QLKLVPLSVRLSTSLLDMYAKCGNLEL 293
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + S F +L+ Y++F SL + + W SIIR
Sbjct: 22 ELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAF 81
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++NG ++L + ++ S V PD FPSV+K+C L D G+ V+ I+ +G + DL
Sbjct: 82 SKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDL 141
Query: 142 YTNNALMNMYAQ 153
Y NAL++MY++
Sbjct: 142 YVGNALVDMYSR 153
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y V DSL + +++ T V W ++I C + G L +M + V P
Sbjct: 449 LIDMYAKCGEVGDSLKIFNSMGT-LDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVP 507
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D F L C L R G+ +H C++R G + +L NAL+ MY++
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII Q+G L+E++ F M+ DH + ++ T L D +FG+ +H+
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSN 433
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ G+ +DL +NAL++MYA+
Sbjct: 434 GIKSGIYIDLSVSNALIDMYAK 455
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
++ QI + + ++ + L+ +Y+ L+ + + D + V+W S+I + +G
Sbjct: 128 VYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPV-RDLVSWNSLISGYSSHG 186
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L + + S + PD SVL + L+ + G+ +H ++ GV+ NN
Sbjct: 187 YYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNN 246
Query: 146 ALMNMY 151
L+ MY
Sbjct: 247 GLLAMY 252
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTL----EPNSRFLISRLLFIYNNFNLVH 56
+T+T +LL+ S K+ KQ+HA TL P S L+S L Y F
Sbjct: 15 LTATARYQSLLQRCTSRKSIPNTKQIHAHTI-TLGLLSSPYSHHLLSSLAAAYAMFGCAP 73
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKS 115
+ L D L+ P+ +W ++IR T +GL ++L FV+M+ SG +PD+ +P V+K+
Sbjct: 74 HARKLFDELRNPSL-FSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKA 132
Query: 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
C + G +HA + G D D + N+LM MY M++
Sbjct: 133 CGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEV 176
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ + + F+ + L+ +Y N + + + D ++ V+W ++I +NG
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTL-VSWNTMINGYFKNG 203
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ E+L F MIG G+ PD SVL C+ L + G VHA + + D+ N
Sbjct: 204 CVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWN 263
Query: 146 ALMNMYAQSQNMD 158
+L++MYA+ NMD
Sbjct: 264 SLLDMYAKCGNMD 276
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 21/188 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-T 64
TL ++L S+ + + LH + + + + L+ +Y N V+ S + T
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKT 386
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P W +II C NGL +++ F +M+ V P+ S+L + L D +
Sbjct: 387 SKQRTAP--WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQ 444
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
++H +IR G + L+++Y++ +++ S H + +
Sbjct: 445 ARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLE------------------SAHNIFNG 486
Query: 185 IPERNGNV 192
IP+++ ++
Sbjct: 487 IPKKDKDI 494
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ NG +L M V P+ SVL +C L + G +H
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGW 350
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
IR ++ ++ AL++MYA+ N+++
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNL 378
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
S K+Q KQ+HA++ S FLI++L+ ++F + + + D L P P + W
Sbjct: 30 SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL--PRPQIFPW 87
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IIR ++N ++L + M + V PD FP +LK+C+ L + G VHA + R
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG D D++ N L+ +YA+ + +
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRL 170
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +HAQ+F+ F+ + L+ +Y + + + + L
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V+W +I+ QNG +E+L F +M V PD SVL + T L D +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGF 170
G S+HA ++++G++++ +L MYA+ + ++D+ + G+
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 171 NG-GREA--SVHEVLDKIPERNGNVELSSGLAGCNK 203
NG REA HE+++K R + ++S ++ C +
Sbjct: 301 NGYAREAIDMFHEMINK-DVRPDTISITSAISACAQ 335
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L ++ Q + +HA + K LE LIS L +Y V + L D
Sbjct: 224 ALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS-LNTMYAKCGQVATAKILFDK 282
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K+P + W ++I +NG E++ F MI V PD S + +C +
Sbjct: 283 MKSP-NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------------FQGFGF 170
S++ + R D++ ++AL++M+A+ +++ ++DR G+G
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGL 401
Query: 171 NG-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
+G REA S++ +++ +V L CN
Sbjct: 402 HGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ KT N+ + +S+L+ + +F+ + ++ + +T++ P + W
Sbjct: 13 KTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI-W 71
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP +LKSC FR G+ +H +++
Sbjct: 72 NTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK 131
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHE 180
LG DLDLY + +L++MY Q+ ++ ++D+ G+ + G AS +
Sbjct: 132 LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA-SKGYIASAQK 190
Query: 181 VLDKIPERN 189
+ D+IP ++
Sbjct: 191 MFDEIPIKD 199
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + SV+ +C G VH+
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 260
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y +
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIK 282
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I T L E+L F M+ SG P+ S+L +C L G +H
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 361
Query: 132 IIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 362 INKRLKGVANASSHRTSLIDMYAKCGDIE 390
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL--FIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
KT ++ K+LH + T +SRL+ Y++ ++ + + + + P+ + W
Sbjct: 16 KTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYI-WN 74
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I+ + + E+LT + M G PDH FP VLK+C+L+ + G+ VH CI++
Sbjct: 75 SMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKT 134
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELS 195
G ++D+Y AL+ MYA +M+ + +V D IP+ N V +
Sbjct: 135 GFEVDVYAATALLQMYAACGDMEAAL------------------KVFDDIPKWN-VVAWT 175
Query: 196 SGLAGC 201
S +AGC
Sbjct: 176 SLIAGC 181
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E+L F M +G PD F V+ +C L G+++HA + + + D
Sbjct: 265 QYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTA 324
Query: 143 TNNALMNMYAQSQNMD 158
AL++MYA+S + +
Sbjct: 325 IGTALVDMYAKSGDAE 340
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P + ++ S+I
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI--PDPTIYSFSSLIYA 90
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+D
Sbjct: 91 LTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRF 165
+ ++ +MY + M ++DR
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRM 177
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII C QNG +E+L F M +GV P+H PS+L +C + G S H
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+R+ + +++ +AL++MYA+ +++
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINL 441
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---PAPPVAWKSIIRCCTQNG 85
++F + S LL Y + + + +L +++ A V+W I+ ++G
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F ++ G PD SVL S G +H +I+ G+ D +
Sbjct: 232 YHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVIS 291
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
A+++MY +S H+Y F EA V RNG V+
Sbjct: 292 AMIDMYGKSG----HVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P + ++ S+I
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI--PDPTIYSFSSLIYA 90
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+D
Sbjct: 91 LTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRF 165
+ ++ +MY + M ++DR
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRM 177
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII C QNG +E+L F M +GV P+H PS+L +C + G S H
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+R+ + +++ +AL++MYA+ +++
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINL 441
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---PAPPVAWKSIIRCCTQNG 85
++F + S LL Y + + + +L +++ A V+W I+ ++G
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F ++ G PD SVL S G +H +I+ G+ D +
Sbjct: 232 YHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVIS 291
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
A+++MY +S H+Y F EA V RNG V+
Sbjct: 292 AMIDMYGKSG----HVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ KT N+ + +S+LL I +F+ + ++ + +T++ P + W
Sbjct: 44 KTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLI-W 102
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP +LKSC F+ G+ +H +++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLK 162
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHE 180
LG DLDL+ + +L+++Y Q+ ++ ++DR +G+ G E S +
Sbjct: 163 LGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIE-SAQK 221
Query: 181 VLDKIPERN 189
+ D+IP ++
Sbjct: 222 LFDEIPVKD 230
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + + PD + +V+ +C G VH+
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSW 291
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L N+LM++Y++ ++
Sbjct: 292 IDDHGFGSNLKIVNSLMDLYSKCGELE 318
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ ++H + N F+ S L+ +Y N S+ + D L P+ W S++ C
Sbjct: 189 RGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPV-RDPILWNSVLAGC 247
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG + E+L F RM+ +GV P F S++ C L RFG+ +HA +IR G + ++
Sbjct: 248 AQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNV 307
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRF 165
+ +++L++MY + + + HI+DR
Sbjct: 308 FISSSLIDMYCKCGEISIAHHIFDRM 333
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 63 DTLKTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV---FPSVLKSCTL 118
+ + TP PP++W IR G ++++ F+RM P +V P+ LKSC
Sbjct: 5 EAVYTPWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAA-PRSSVPASLPAALKSCAA 63
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA-- 176
L G S+HA IR G D +T NAL+N+Y + +H G G A
Sbjct: 64 LGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLH-STGVTSVGGTGSSTALE 122
Query: 177 SVHEVLDKIPERN 189
SV +V D++ ER+
Sbjct: 123 SVRKVFDEMIERD 135
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ C + G E+L +M G PD SVL D + G VH
Sbjct: 137 VSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGF 196
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+R G D D++ ++L++MYA D + +V D +P R+
Sbjct: 197 AVRNGFDNDVFVGSSLIDMYANCTRTDYSV------------------KVFDNLPVRD-P 237
Query: 192 VELSSGLAGCNK 203
+ +S LAGC +
Sbjct: 238 ILWNSVLAGCAQ 249
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+LI + N S++ KQLHA + + ++ F+ S L+ +Y + + + D +
Sbjct: 277 SLIPVCGNLASLRF---GKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRM 333
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+P V+W ++I +G E+L F RM P+H F +VL +C+
Sbjct: 334 CSP-DVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 384
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL--FIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
KT ++ K+LH + T +SRL+ Y++ ++ + + + + P+ + W
Sbjct: 16 KTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYI-WN 74
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I+ + + E+LT + M G PDH FP VLK+C+L+ + G+ VH CI++
Sbjct: 75 SMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKT 134
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELS 195
G ++D+Y AL+ MYA +M+ + +V D IP+ N V +
Sbjct: 135 GFEVDVYAATALLQMYAACGDMEAAL------------------KVFDDIPKWN-VVAWT 175
Query: 196 SGLAGC 201
S +AGC
Sbjct: 176 SLIAGC 181
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I Q G E+L F M +G PD F V+ +C L G+++HA
Sbjct: 280 VAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAY 339
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + + D AL++MYA+S + +
Sbjct: 340 VSKTNLTDDTAIGTALVDMYAKSGDAE 366
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 3 STKTLINLLKNPV-SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S +TL + + + S T +Q +LH+ I +S ++L+ Y +F S +
Sbjct: 11 SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSV 70
Query: 62 LDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +P+ V W SIIR T NGL E+L+ + + PD FPSV+ +C L+
Sbjct: 71 F-RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
DF +S+H ++ +G DLY NAL++MY + ++D
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLD 167
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F ++ + ++ +Y + DSL + + +K + W +II C +
Sbjct: 278 EVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCN 336
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
L RM GV PD S+L C+LL R G+ +H CI +LG++ D+ N L+
Sbjct: 337 LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI 396
Query: 149 NMYAQ 153
MY++
Sbjct: 397 EMYSK 401
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H ++ + ++ + L+ +Y FN + + + + + V+W S+I
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISGYN 192
Query: 83 QNG-------LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
NG + +S+ F+ M+ PD S+L++C L D FG+ VH +I
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G + D +N L+NMYA+ N+
Sbjct: 252 GYECDTTASNILINMYAKCGNL 273
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + K Q K++H IFK + + + L+ +Y+ + +S + +
Sbjct: 356 TMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM 415
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
KT V W ++I C G +++ F M +G+ PDH F +++ +C+
Sbjct: 416 KTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 466
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 3 STKTLINLLKNPV-SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S +TL + + + S T +Q +LH+ I +S ++L+ Y +F S +
Sbjct: 11 SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSV 70
Query: 62 LDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +P+ V W SIIR T NGL E+L+ + + PD FPSV+ +C L+
Sbjct: 71 F-RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
DF +S+H ++ +G DLY NAL++MY + ++D
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLD 167
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDT 64
T + LL + K+LH + K + NS ++S L +Y + DSL + +
Sbjct: 418 TYVMLLSMSTQLGDLHLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFEN 476
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K + W +II C + L RM GV PD S+L C+LL R
Sbjct: 477 MKAR-DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 535
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H CI +LG++ D+ N L+ MY++
Sbjct: 536 GKEIHGCIFKLGLESDVPVGNVLIEMYSK 564
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L+ + + + +H I K + + LL +Y FN + D + D +
Sbjct: 218 TMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM 277
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I +Q GL ES+ F+ M+ PD S+L++C L D FG
Sbjct: 278 -VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFG 335
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ VH +I G + D +N L+NMYA+ N+
Sbjct: 336 KYVHDYMITSGYECDTTASNILINMYAKCGNL 367
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H ++ + ++ + L+ +Y FN + + + + + V+W S+I
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISGYN 192
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E+L + R GV PD SVL++C L G+ +H I ++G+ D+
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252
Query: 143 TNNALMNMYAQ 153
NN L++MY +
Sbjct: 253 VNNGLLSMYCK 263
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNG E++ F +M+ + V PD + +L T L D G+ +H
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD 441
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+ ++G + ++ +N L++MYA+ M
Sbjct: 442 LAKMGFNSNIVVSNTLVDMYAKCGEM 467
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + K Q K++H IFK + + + L+ +Y+ + +S + +
Sbjct: 519 TMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM 578
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
KT V W ++I C G +++ F M +G+ PDH F +++ +C+
Sbjct: 579 KTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 629
>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 681
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V ++ Q+HA + L+ +L+ Y+ FNL +++ +++
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN-SDI 106
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N L E + + RM+ G+ PD +PSVLK+C +D FG V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
H I LY NAL++MY + +NM + ++DR
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRM 205
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S L +LL N +K+ A Q+H+Q+ T S I+ LL +Y +H +L L
Sbjct: 95 SSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLL 154
Query: 62 LDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+T P+ V W ++I +++ ++LT F RM +G+YP+H F ++L +C
Sbjct: 155 FNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAA 214
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
G+ +HA I + D + AL++MYA+ +M +
Sbjct: 215 LLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLL------------------AEN 256
Query: 181 VLDKIPERN 189
V D++P RN
Sbjct: 257 VFDEMPHRN 265
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSI 77
S+ +Q+HA I K N F+ + LL +Y S+ L + + P V+W S+
Sbjct: 217 SEGQQIHALIHKHCFLNDPFVATALLDMYAKCG----SMLLAENVFDEMPHRNLVSWNSM 272
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I +N L ++ F ++ G PD SVL +C LV+ FG+ VH I++ G+
Sbjct: 273 IVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGL 330
Query: 138 DLDLYTNNALMNMYAQ 153
+Y N+L++MY +
Sbjct: 331 VGLVYVKNSLVDMYCK 346
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L SI +Q +H+ + KT + + S L+ +Y + D+ + K
Sbjct: 405 SLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK-E 463
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W ++I Q+G E++ F M+ GV P++ F SVL +C+
Sbjct: 464 HNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACS 512
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H I K ++ + L+ +Y L D+ L V W +I C
Sbjct: 318 GKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLF-CGGGDRDVVTWNVMIMGCF 376
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ++ T F MI GV PD + S+ + + G +H+ +++ G +
Sbjct: 377 RCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSR 436
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+++L+ MY + +M D +Q F RE H V+
Sbjct: 437 ISSSLVTMYGKCGSM----LDAYQVF-----RETKEHNVV 467
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LLK S K Q + +H+ I + S +L+ + + V D + + ++
Sbjct: 24 SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLI---SKYAQVKDPISSVSVFRSI 80
Query: 69 APP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+P W SIIR T NGL ++L + M + PD FPSV+ SC ++D G
Sbjct: 81 SPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG 140
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH + +G + DLY NAL++MY++ ++D
Sbjct: 141 CIVHEHAMEMGFESDLYIGNALIDMYSRFVDLD 173
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ DT K V W S+I TQ+G E L F +M+ PD F +L + L
Sbjct: 379 VFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLA 436
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D G +H +I+ G + +L N+L+++YA+ MD
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMD 474
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG ++L + + +G+ PD SVL +C L+ + G +VH
Sbjct: 188 VSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGV 247
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM--------DMHIYDRFQ------GFGFNGGREAS 177
I ++G+ D+ N L++MY + + + M + D G+ G EAS
Sbjct: 248 IEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 178 VHEVLDKI 185
V +D I
Sbjct: 308 VKLFMDMI 315
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y F + ++ + + V W ++I Q G S+ F+ MI G P
Sbjct: 263 LLSMYFKFERLREARRVFSKMAVK-DSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVP 320
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
D S +++C D + G+ VH +I G + D N L++MYA+ ++
Sbjct: 321 DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LL + +Q + +H + K + + LL +Y + D L + +
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++I M G+ PD +L C+LL R G
Sbjct: 484 -SAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I + G + ++ NAL+ MY++ +++
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLE 575
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T L++LLK + K Q K +H +I N+ L L+ +Y + +L + +
Sbjct: 3 TTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQ 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVE------SLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T++ P W ++ CT+N + +E +L F M SG PD +V+ SC
Sbjct: 63 TIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCA 122
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ--------- 166
L+D G+ +H ++R G LD + ++AL++MY + ++M ++++ Q
Sbjct: 123 RLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 182
Query: 167 ---GFGFNGGREASVHEVLDKIPE---RNGNVELSSGLAGCNK 203
G+ G ++ + E+ ++ E R LSS L C++
Sbjct: 183 MIAGYSLKGDSKSCI-ELFRRMDEEGIRPTLTTLSSILMACSR 224
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++ + + + K++H ++ ++ F+ S L+ +Y + + + + +
Sbjct: 113 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 172
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S+I + G + F RM G+ P S+L +C+ V+ + G
Sbjct: 173 QRKNV-VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 231
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H IIR V+ D++ N++L+++Y + N+
Sbjct: 232 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 263
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I + G +E+L F M +GV PD F SVL +C+ L G+ +H
Sbjct: 279 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 338
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
II +++ N L QS
Sbjct: 339 IIESKLEI----NEVLFEKMQQS 357
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LLK S K Q + +H+ I + S +L+ + + V D + + ++
Sbjct: 24 SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLI---SKYAQVKDPISSVSVFRSI 80
Query: 69 APP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+P W SIIR T NGL ++L + M + PD FPSV+ SC ++D G
Sbjct: 81 SPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG 140
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH + +G + DLY NAL++MY++ ++D
Sbjct: 141 CIVHEHAMEMGFESDLYIGNALIDMYSRFVDLD 173
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ DT K V W S+I TQ+G E L F +M+ PD F +L + L
Sbjct: 379 VFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLA 436
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D G +H +I+ G + +L N+L+++YA+ MD
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMD 474
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG ++L + + +G+ PD SVL +C L+ + G +VH
Sbjct: 188 VSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGV 247
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM--------DMHIYDRFQ------GFGFNGGREAS 177
I ++G+ D+ N L++MY + + + M + D G+ G EAS
Sbjct: 248 IEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 178 VHEVLDKI 185
V +D I
Sbjct: 308 VKLFMDMI 315
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I Q G S+ F+ MI G PD S +++C D + G+ VH
Sbjct: 289 VTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKY 347
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+I G + D N L++MYA+ ++
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDL 373
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LL + +Q + +H + K + + LL +Y + D L + +
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++I M G+ PD +L C+LL R G
Sbjct: 484 -SAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I + G + ++ NAL+ MY++ +++
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLE 575
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N K + Q KQ+HA + K F+IS +L +Y + + + + +
Sbjct: 502 TFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQI 561
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+P VAW ++I C +NG ++L + +M +GV PD F +++K+C+LL G
Sbjct: 562 PSP-DDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQG 620
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +HA I++L D + +L++MYA+ N++
Sbjct: 621 KQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIE 653
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-FRFGESVHA 130
++W ++I C ++GL SL F+ ++ SG+ PD SVL++C+ L + + G VH
Sbjct: 364 ISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHT 423
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C ++ G+ LD + + AL+++Y++ M+
Sbjct: 424 CALKAGIVLDSFVSTALIDVYSKGGKME 451
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q KQ+HA I K F+++ L+ +Y + D+ L +
Sbjct: 603 TFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM 662
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T + + W ++I Q+G E+L F M GV PD F VL +C+
Sbjct: 663 NTRSVAL-WNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W + Q G E++ CF MI S V D + +L L G+ +H ++
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV 324
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R G D + N+ +NMY ++ +++
Sbjct: 325 RFGWDQFVSVANSAINMYVKAGSVN 349
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +++ T + E+L F M G D F + K+ LV + G+ +HA +
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNV 192
I++ DL+ + +++MY + M S +V ++IP + +V
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMK------------------SARKVFNQIPSPD-DV 567
Query: 193 ELSSGLAGC 201
++ ++GC
Sbjct: 568 AWTTVISGC 576
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
S + +HAQ+ KT N+ + +S+LL + +F+ ++ + DT++ P + W ++
Sbjct: 2 SSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLI-WNTM 60
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
R + V +L ++ MI G+ PD FP +LKSC + G+ +H +++LG
Sbjct: 61 FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
DLD+Y + +L++MYAQ+ ++
Sbjct: 121 DLDIYVHTSLISMYAQNGRLE 141
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
+++ L+ +Y+ F V + L D L ++W ++I T L E+L F M+ S
Sbjct: 259 IVNALIDLYSKFGEVETACELFDGLWNK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRS 317
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR--LGVDLDLYT-NNALMNMYAQSQNM 157
G P+ S+L +C L G +H I + GV ++ + +L++MYA+ ++
Sbjct: 318 GETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDI 377
Query: 158 D 158
D
Sbjct: 378 D 378
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I + G E+L F M+ + V PD + +V+ +C G VH+
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y++
Sbjct: 247 WINDHGFASNLKIVNALIDLYSK 269
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ S+ + +Q+H KT +++ LL +Y + ++ L +T+
Sbjct: 127 TLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETM 186
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S++ +QNG +++ CF + G + FPSVL +C + R G
Sbjct: 187 EGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVG 246
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH CI++ G ++Y +AL++MYA+ + M+
Sbjct: 247 VQVHCCIVKSGFKTNIYVQSALIDMYAKCREME 279
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
Q+F + F + ++ Y+N + D+ L + P ++W ++I ++G
Sbjct: 49 QMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRS--NPVKNTISWNALISGYCKSGSK 106
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
VE+ F M G+ P+ SVL+ CT LV GE +H I+ G DLD+ N L
Sbjct: 107 VEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGL 166
Query: 148 MNMYAQSQNMD--MHIYDRFQG 167
+ MYAQ + + ++++ +G
Sbjct: 167 LAMYAQCKRISEAEYLFETMEG 188
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ Q+H I K+ + ++ S L+ +Y + + LL+ +
Sbjct: 229 TFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGM 288
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL-LVDFRF 124
+ V+W S+I C + GL+ E+L+ F RM + D PS+L L + +
Sbjct: 289 EVD-DVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKI 347
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
S H I++ G NNAL++MYA+ MD
Sbjct: 348 ASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMD 381
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A H I KT + + + L+ +Y ++ +L + + + ++W +++ T
Sbjct: 348 ASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGM-IEKDVISWTALVTGNT 406
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E+L F M G+ PD V SVL + L FG+ VH I+ G L
Sbjct: 407 HNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLS 466
Query: 143 TNNALMNMYAQSQNMD 158
NN+L+ MY + +++
Sbjct: 467 VNNSLVTMYTKCGSLE 482
>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 767
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ S+ + +Q+H KT +++ LL +Y + ++ L DT+
Sbjct: 128 TLGSVLRMCTSLLLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFDTM 187
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S++ +QNG +++ CF + G + FPSVL +C + R G
Sbjct: 188 AGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTACASVSACRVG 247
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH CI++ G ++Y +AL++MYA+ ++++
Sbjct: 248 VQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLE 280
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
Q+F + F + ++ Y+N + D+ L + P ++W ++I ++G
Sbjct: 50 QMFDKMPERDEFTWNTMIVAYSNSRRLADAEQLFRS--NPVKNTISWNALISGYCKSGSK 107
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
VE+ F M G+ P+ SVL+ CT L+ GE +H I+ G DLD+ N L
Sbjct: 108 VEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLLLLLRGEQIHGHTIKTGFDLDVNVVNGL 167
Query: 148 MNMYAQSQNMD--MHIYDRFQG 167
+ MYAQ + + +++D G
Sbjct: 168 LAMYAQCKRISEAEYLFDTMAG 189
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ T NG E+L F M G+YPD V SVL + L FG+ VH
Sbjct: 385 ISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQIVTASVLSASAELTLLEFGQQVHGN 444
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+ G L NN+L+ MY + +++
Sbjct: 445 YIKSGFPSSLSVNNSLVTMYTKCGSLE 471
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ Q+H I K+ + ++ S L+ +Y + + LL+ +
Sbjct: 230 TFPSVLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARALLEGM 289
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS-CTLLVDFRF 124
+ V+W S+I C + GL+ E+L+ F RM + D PS+L + + +
Sbjct: 290 EVD-DVVSWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILNCFASSRTEMKI 348
Query: 125 GESVHACIIRLGVDL 139
S H I++ G+ L
Sbjct: 349 ASSAHCLIVKPGMRL 363
>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 884
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 21 SQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
SQ +QLH++IFKT P+ FL +L+F+Y + D+ + D + AW ++I
Sbjct: 97 SQGRQLHSRIFKTF-PSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTA-FAWNTMI 154
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
NG +L + M GV + FP++LK+C L D R G +H+ +++LG
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214
Query: 139 LDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+ NAL++MYA++ ++ ++D FQ G
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK ++ +LH+ + K ++ F+++ L+ +Y + + + L D +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W SI+ + +G +E+L F M +G P+ S L +C + G+ +H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 130 ACIIRLGV-DLDLYTNNALMNMYAQSQNM 157
A +++ +LY NAL+ MY + M
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKM 336
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K++HA + K+ +S ++ + L+ +Y + + +L + A V W S+I+
Sbjct: 303 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNN-ADVVTWNSLIKGY 361
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN + E+L F MI +G D S++ + L + G +HA +I+ G D +L
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421
Query: 142 YTNNALMNMYAQ 153
N L++MY++
Sbjct: 422 QVGNTLIDMYSK 433
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QN VE+L F + + D + S+L++ ++L + +H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I+R G+ LD N L+++Y + +NM
Sbjct: 513 ILRKGL-LDTVIQNELVDVYGKCRNM 537
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG E++ F RM+ +G+ D +L + L G +H
Sbjct: 553 VSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCY 612
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFNGGREAS 177
++R G L+ A+++MYA ++ ++DR + +G +G +A+
Sbjct: 613 LLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAA 672
Query: 178 VHEVLDKIPERN 189
V E+ DK+ N
Sbjct: 673 V-ELFDKMRHEN 683
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 18 KTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
K SQ KQ+HAQ ++ P+S FL S++L +++FN + + L P W
Sbjct: 40 KDMSQLKQIHAQALRSTLPDSPHSLFLYSKILH-FSSFNDLDYAYRLFSKFDNPNA-FMW 97
Query: 75 KSIIRCCTQNGLLVE-SLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++IR C ++ E S + RMI G V PD + +P VLK+C L G+ VHA +
Sbjct: 98 NTLIRACARSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQM 157
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ G + D+Y NN+L++ YA + G V DK+P R+
Sbjct: 158 LKHGFESDVYINNSLIHFYA------------------SCGCSEPAQYVFDKMPARS 196
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK + ++ KQ+HAQ+ K + ++ + L+ Y + + + D K PA
Sbjct: 137 VLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFD--KMPA 194
Query: 70 PP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I Q G +L FV+ + PD SVL +C L G V
Sbjct: 195 RSLVSWNAMIDALVQFGEFDAALKLFVQ-LQELFEPDGYTMQSVLNACAGLCALSLGMWV 253
Query: 129 HACIIR---LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
HA ++R + V LD+ +N L++MY + ++D M +++R GF +
Sbjct: 254 HAYMLRKFDVEVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAMH 313
Query: 172 GGRE 175
G E
Sbjct: 314 GKAE 317
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 99/186 (53%), Gaps = 19/186 (10%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
S + +HAQ+ KT N+ + +S+L+ + +F+ + ++ + +T++ P + W ++
Sbjct: 1 SSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI-WNTM 59
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
R + V +L +V MI G+ P+ FP +LKSC FR G+ +H +++LG
Sbjct: 60 FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 119
Query: 138 DLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHEVLD 183
DLDLY + +L++MY Q+ ++ ++D+ G+ + G AS ++ D
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA-SKGYIASAQKMFD 178
Query: 184 KIPERN 189
+IP ++
Sbjct: 179 EIPIKD 184
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + SV+ +C G VH+
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y +
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIK 267
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I T L E+L F M+ SG P+ S+L +C L G +H
Sbjct: 287 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 346
Query: 132 IIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 347 INKRLKGVANASSHRTSLIDMYAKCGDIE 375
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 2 TSTKTLINLL--KNPV--SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
T++ +LIN L KN + S + Q K +HA + + +L S ++ +FN
Sbjct: 7 TTSPSLINALNLKNRLLQSFNSLKQLKHVHAALLRLGFDQGSYLWSMIIRSSFDFNDTTY 66
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + + +K P V + ++IR + ES+ + M G P++ FP V+K+C
Sbjct: 67 TRLIFNQIKEP-DVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACA 125
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREAS 177
L+DF+ G +H +++LG D +L+ N +L+++YA+ ++D
Sbjct: 126 RLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSID------------------D 167
Query: 178 VHEVLDKIPERN--GNVELSSGLAGCNKFEKRV 208
++LD IPE N + SG G K+ + +
Sbjct: 168 ALKMLDLIPESNIVSWTAIISGYIGVGKYREAI 200
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 5/195 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ +L + I + + + I + + + F+ + L+ +Y + + CL D +
Sbjct: 217 TIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGM 276
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I+ NGL ++L F +M+ +G+ PDH L +C L G
Sbjct: 277 -AERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACARLGALELG 335
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ + R + AL++MYA+ +M ++ F+G G++ +V
Sbjct: 336 DWGSNLMDRTEFFTNHVLGTALIDMYAKCGSM-AKAWEVFKGI---KGKDRAVWNAAISG 391
Query: 186 PERNGNVELSSGLAG 200
NG+ + + GL G
Sbjct: 392 LAMNGHEKAAFGLFG 406
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + K + F+ + L+ +Y + D+L +LD L + V+W +II G
Sbjct: 136 MHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLD-LIPESNIVSWTAIISGYIGVG 194
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F RM+ +G+ PD VL +C + D GE + I + +++
Sbjct: 195 KYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTT 254
Query: 146 ALMNMYAQSQNMD 158
+L+++YA+ NM+
Sbjct: 255 SLVDLYAKHGNME 267
>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
Length = 960
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ SQ +QLH++IFKT FL +L+F+Y + D+ + D + AW +
Sbjct: 94 RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTA-FAWNT 152
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I NG +L + M GV + FP++LK+C L D R G +H+ +++LG
Sbjct: 153 MIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+ NAL++MYA++ ++ ++D FQ G
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK ++ +LH+ + K ++ F+++ L+ +Y + + + L D +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W SI+ + +G +E+L F M +G P+ S L +C + G+ +H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 130 ACIIRLGV-DLDLYTNNALMNMYAQSQNM 157
A +++ +LY NAL+ MY + M
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKM 336
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K++HA + K+ +S ++ + L+ +Y + + +L + A V W S+I+
Sbjct: 303 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNN-ADVVTWNSLIKGY 361
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN + E+L F MI +G D S++ + L + G +HA +I+ G D +L
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421
Query: 142 YTNNALMNMYAQ 153
N L++MY++
Sbjct: 422 QVGNTLIDMYSK 433
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QN VE+L F + + D + S+L++ ++L + +H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I+R G+ LD N L+++Y + +NM
Sbjct: 513 ILRKGL-LDTVIQNELVDVYGKCRNM 537
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG E++ F RM+ +G+ D +L + L G +H
Sbjct: 553 VSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCY 612
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFNGGREAS 177
++R G L+ A+++MYA ++ ++DR + +G +G +A+
Sbjct: 613 LLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAA 672
Query: 178 VHEVLDKIPERN 189
V E+ DK+ N
Sbjct: 673 V-ELFDKMRHEN 683
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 39 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 97
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 98 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 157
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 158 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 193
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ +Y + + + + D + +
Sbjct: 134 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 193
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 194 L-VSWNSMIDALVRFGEYDSALQLF-REMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 251
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF-NG 172
A ++R + V +D+ N+L+ MY + ++ M FQG GF
Sbjct: 252 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRM-AEQVFQGMQKRDLASWNAMILGFATH 310
Query: 173 GREASVHEVLDKIPERNGNVELSS 196
GR D++ ++ NV +S
Sbjct: 311 GRAEEAMNFFDRMVDKRENVRPNS 334
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQA---KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M S N PV +K A QLHA T F+ + L+ +Y F V +
Sbjct: 94 MRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDE 153
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + D V+W ++ +N ++ F M+ GV P+ F V+ +CT
Sbjct: 154 ARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACT 213
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
D G VHA +IR G D D++T NAL++MY++ ++ M
Sbjct: 214 GSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRM 255
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
+++HA + +T F + L+ +Y+ + + + K P V +W + I C
Sbjct: 221 GRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFG--KVPETDVVSWNAFISGC 278
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+G +L ++M SG+ P+ S+LK+C F G +H +++ D D
Sbjct: 279 VLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDN 338
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
Y L++MYA+ +D +V D IP+R+
Sbjct: 339 YIAFGLVDMYAKHGLLD------------------DAKKVFDWIPQRD 368
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISR--LLFIYNNFNLVHDS 58
M S +T+ LL + ++ Q +HA + K+ F + R LL Y+ L +
Sbjct: 1 MRSLETIGPLLTRYAATQSLLQGAHIHAHLLKS----GLFAVFRNHLLSFYSKCRLPGSA 56
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ D + P V+W S++ + N + ++L F M V + V P VLK
Sbjct: 57 RRVFDEIPDPCH-VSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP- 114
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
D FG +HA + G+ D++ NAL+ MY GFGF
Sbjct: 115 --DAGFGTQLHALAMATGLGGDIFVANALVAMYG--------------GFGF 150
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S +Q+HA K + +++ L+ Y + ++ + + +
Sbjct: 406 TLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEK- 464
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+A+ S+I +Q +++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 465 HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQG 524
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D++ NAL+ YA+ +++
Sbjct: 525 KQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIE 557
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + +Q+H + K + ++ L+ +Y L+ D+ + D +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++I C+ E+L+ F RM G + +VLKS L
Sbjct: 365 PQR-DLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDT 423
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
VHA +LG D + N L++ Y + ++ + Y F+ G
Sbjct: 424 RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLN-YAYRVFEKHG 466
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ L
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGL 566
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ + P+H SVL +C
Sbjct: 567 PEKGV-VSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCAC 616
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 119 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 177
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 178 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 237
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 238 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 273
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ +Y + + + + D + +
Sbjct: 214 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 273
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 274 L-VSWNSMIDALVRFGEYDSALQLF-REMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 331
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF-NG 172
A ++R + V +D+ N+L+ MY + ++ M FQG GF
Sbjct: 332 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRM-AEQVFQGMQKRDLASWNAMILGFATH 390
Query: 173 GREASVHEVLDKIPERNGNVELSS 196
GR D++ ++ NV +S
Sbjct: 391 GRAEEAMNFFDRMVDKRENVRPNS 414
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T+ L+ LL+ ++ K+ Q K +H ++ N FL L+ Y + +L + C+ D
Sbjct: 3 TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFD 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDF 122
++ P W ++ T+N + VE+L F +++ + PD +PSV K+C L +
Sbjct: 63 NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRY 122
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
G+ +H C+I+ G+ +D+ ++L+ MY + + I+
Sbjct: 123 VLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIW 162
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
K +H + KT + S L+ +Y N ++ L + + P VA W ++I C
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEM--PEKDVACWNTVISCY 182
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q+G ++L F M G P+ + + SC L+D G +H +I G LD
Sbjct: 183 YQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS 242
Query: 142 YTNNALMNMYAQSQNMDMHI 161
+ ++AL++MY + +++M I
Sbjct: 243 FISSALVDMYGKCGHLEMAI 262
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I G L E+L F M S V D F SVL +C+ L G+ +H
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNL 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II +D + AL++MYA+ +D
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVD 461
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + K++H I + N+ ++ LL +Y V ++ + L
Sbjct: 411 TFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCL 470
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G +L F M+ S V PD F ++L +C
Sbjct: 471 -PKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACG-------- 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD Y N ++N+Y ++ Y GR +E+L +
Sbjct: 522 ---HAGL----VDEGCYYFNQMINVYGIIPRVEH--YSCLIDLLGRAGRLHEAYEILQQN 572
Query: 186 PERNGNVELSSGLAGCNKFEKRV 208
PE +VEL S L + + +
Sbjct: 573 PEIRDDVELLSTLFSACRLHRNI 595
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 53 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 111
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 112 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 171
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 172 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 207
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ +Y + + + + D + +
Sbjct: 148 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 207
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 208 L-VSWNSMIDALVRFGEYDSALQLF-REMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 265
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF-NG 172
A ++R + V +D+ N+L+ MY + ++ M FQG GF
Sbjct: 266 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRM-AEQVFQGMQKRDLASWNAMILGFATH 324
Query: 173 GREASVHEVLDKIPERNGNVELSS 196
GR D++ ++ NV +S
Sbjct: 325 GRAEEAMNFFDRMVDKRENVRPNS 348
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 48/218 (22%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL----------FIYNN--FN 53
T I+LLK S K+ SQ KQ+ A IF R +++L+ F Y N FN
Sbjct: 10 TYISLLK---SCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66
Query: 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+HD + L +I+ ++G +++ F ++ GV+PD+ +P VL
Sbjct: 67 YIHDPSLFIYNL-----------MIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVL 115
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173
K + + R GE VHA +++ G++ D Y N+ M+MYA+ +GF
Sbjct: 116 KGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAE--------LGLVEGF----- 162
Query: 174 REASVHEVLDKIPERNG---NVELSSGLAGCNKFEKRV 208
+V +++P+R+ N+ + SG C +FE+ V
Sbjct: 163 -----TQVFEEMPDRDAVSWNI-MISGYVRCKRFEEAV 194
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
++ LL Q K +H I + + + L+ +Y + S + + LK
Sbjct: 344 VVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLK 403
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W SII NG E+L F M G+ PD F +VL +C+
Sbjct: 404 EK-DTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACS--------- 453
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
HA ++ G L +++ +MY N++ Y F G E++ K+P
Sbjct: 454 --HAGLVEEGRKL----FHSMSSMYHIEPNLEH--YGCFIDLLGRAGLLQEAEELVKKLP 505
Query: 187 ERNGNV 192
+N +
Sbjct: 506 AQNNEI 511
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TLI LL + + Q K++H + + + FLI+ L+ +Y N + D+ L +
Sbjct: 246 TLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNHFLINSLIEMYCKCNSMVDARKLFEH 305
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W S+I +N ESL F RM+ G PD F +VL +C + F
Sbjct: 306 MAWK-DTVSWNSMISGYARNRDAFESLRVFCRMVLEGTKPDKITFITVLGACEQITAMEF 364
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G SVH+ + + G ++ AL++MYA+ N+ A H V ++
Sbjct: 365 GRSVHSYLSKKGFSATIFVATALIDMYAKCGNL------------------ACAHLVFEE 406
Query: 185 IPERN 189
+PE+N
Sbjct: 407 MPEKN 411
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+L+ SIK+ ++ +QLHA I + N+ +L ++L Y + L+ + + D +
Sbjct: 46 TVLQTLTSIKSFTKGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGI-V 104
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
W +IR NG V++L + M G D +P V+K+C L D FG
Sbjct: 105 LKNSFLWNFMIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWR 164
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
VH ++ G +LD+Y N+L+ MY++ NM M ++DR
Sbjct: 165 VHCEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDR 203
>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 676
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
+ LL +Y+ N+V DS+ + ++L A V W S I QNG +L+ F MI +
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSL-AYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSI 300
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
P+H F S+L +C+ L GE +HA ++LGVD + Y + AL+++Y + N++
Sbjct: 301 SPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVE 356
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
E + F+ + ++ +Y F + D+ + D + V + ++I Q GL E+L
Sbjct: 132 FEVSDGFVATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGYNQRGLDGEALEV 190
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F M+GS + P+ SVL SC L D G+ +H +++ G++ + + +L+ MY++
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSK 250
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M +LI N S+ T K LH I K+ S F +L+ Y +++ ++
Sbjct: 1 MNCYTSLIAQFTNKKSLTT---LKSLHTHILKSGSLFS-FFGHKLIDGYIKCSVITEARK 56
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L D + V W S+I G E++ + M+ GV PD F ++ K+ + +
Sbjct: 57 LFDEMPNR-HIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMG 115
Query: 121 DFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMD--MHIYDR 164
R G+ H + LG ++ D + +++MYA+ M ++DR
Sbjct: 116 VSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDR 162
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 120
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 216
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ +Y + + + + D + +
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 217 L-VSWNSMIDALVRFGEYDSALQLF-REMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 274
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF-NG 172
A ++R + V +D+ N+L+ MY + ++ M FQG GF
Sbjct: 275 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRM-AEQVFQGMQKRDLASWNAMILGFATH 333
Query: 173 GREASVHEVLDKIPERNGNVELSS 196
GR D++ ++ NV +S
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNS 357
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K+ KQ+H+QI KT N++F +S+L+ + F + +L L ++++ P + W
Sbjct: 43 KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFI-WN 101
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++IR + + V ++ +VRM+ GV P+ FP +LKSC + + G+ +H +++L
Sbjct: 102 TMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKL 161
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G++ D + + +L+NMYAQ+ +
Sbjct: 162 GLESDPFVHTSLINMYAQNGEL 183
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 31/188 (16%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-NNFNLVHDSL--------- 59
LLK+ + + KQ+H + K + F+ + L+ +Y N L + L
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197
Query: 60 ---------------CLLDT--LKTPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
CL D L P V+W ++I Q+G E+L F M
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ V P+ + +VL +C G V + I G+ +L NAL++MY++ ++D
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD- 316
Query: 160 HIYDRFQG 167
D F+G
Sbjct: 317 KARDLFEG 324
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I + E+L F +M S V P+ F S+L +C L G+ +HA
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Query: 132 IIR--LGV-DLDLYTNNALMNMYAQSQNMD 158
I + LG+ + L+T +L++MYA+ N++
Sbjct: 391 IDKKFLGLTNTSLWT--SLIDMYAKCGNIE 418
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
S + +HAQ+ KT N+ + +S+L+ + +F+ + ++ + +T++ P + W ++
Sbjct: 1 SSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI-WNTM 59
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
R + V +L +V MI G+ P+ FP +LKSC FR G+ +H +++LG
Sbjct: 60 FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 119
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
DLDLY + +L++MY Q+ ++ D + F + R+ + L K G +E
Sbjct: 120 DLDLYVHTSLISMYVQNGRLE----DARKVFDQSSHRDVVSYTALIKGYASRGYIE 171
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +V+ +C G VH
Sbjct: 186 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 245
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y++
Sbjct: 246 IDDHGFGSNLKIVNALIDLYSK 267
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 27 HAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
HAQ+ KT N+ + +S+LL + +F+ + ++ + +T + P + W +++R
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLI-WNTMLRGLAS 60
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ LV L +VRM+ G P+ FP +LKSC F G +HA +++LG +LD Y
Sbjct: 61 SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120
Query: 144 NNALMNMYAQSQNMD 158
+ +L++MYA++ ++
Sbjct: 121 HTSLISMYARNGRLE 135
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 31/181 (17%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--- 66
LLK+ KT + +Q+HAQ+ K R+ + L+ +Y + D+ + D
Sbjct: 89 LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148
Query: 67 ---------------------------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
T V+W ++I +N E+L F M+
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMR 208
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI-IRLGVDLDLYTNNALMNMYAQSQNMD 158
+ V PD SVL +C G +H + G L NA + +Y++ +++
Sbjct: 209 TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVE 268
Query: 159 M 159
+
Sbjct: 269 I 269
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I T L E+L F M+ SG P+ SVL +C L G +H
Sbjct: 283 VSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVY 342
Query: 132 IIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 343 IDKRLKGVTNGSALRTSLIDMYAKCGDIE 371
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K+ KQ+H+QI KT N++F +S+L+ + F + +L L ++++ P + W
Sbjct: 43 KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFI-WN 101
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++IR + + V ++ +VRM+ GV P+ FP +LKSC + + G+ +H +++L
Sbjct: 102 TMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKL 161
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G++ D + + +L+NMYAQ+ +
Sbjct: 162 GLESDPFVHTSLINMYAQNGEL 183
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 31/188 (16%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-NNFNLVHDSL--------- 59
LLK+ + + KQ+H + K + F+ + L+ +Y N L + L
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197
Query: 60 ---------------CLLDT--LKTPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
CL D L P V+W ++I Q+G E+L F M
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ V P+ + +VL +C G V + I G+ +L NAL++MY++ ++D
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD- 316
Query: 160 HIYDRFQG 167
D F+G
Sbjct: 317 KARDLFEG 324
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I + E+L F +M S V P+ F S+L +C L G+ +HA
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Query: 132 IIR--LGV-DLDLYTNNALMNMYAQSQNMD 158
I + LG+ + L+T +L++MYA+ N++
Sbjct: 391 IDKKFLGLTNTSLWT--SLIDMYAKCGNIE 418
>gi|125525852|gb|EAY73966.1| hypothetical protein OsI_01850 [Oryza sativa Indica Group]
Length = 641
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M + N PV +K A+ Q+HA T + F+ + L+ +Y F + D
Sbjct: 94 MRAEGVCCNEFSLPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + D + V+W ++ +N +++ F M+ SG+ P F V+ +CT
Sbjct: 154 ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G VH ++R+G D D++T NAL++MY + +D+
Sbjct: 214 GSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDI 255
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + + F + L+ +Y V D L+ + V+W ++I C
Sbjct: 221 GRQVHGMVVRMGYDKDVFTANALVDMYVKMGRV-DIASLIFEKMPDSDVVSWNALISGCV 279
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ S+LK+C F G +H +I++ D D Y
Sbjct: 280 LNGHDHRAIELLLQMKSSGLVPNVFTLSSILKACAGTGAFDLGRQIHGFMIKVNADSDDY 339
Query: 143 TNNALMNMYAQSQNMD 158
L++MYA++ +D
Sbjct: 340 IGVGLVDMYAKNHFLD 355
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 22/166 (13%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S T+ L + + LHA + K S LL + N + S C
Sbjct: 1 MRSAGTISQQLTRYAAAQALLPGAHLHASLLK----------SGLLASFRNHLISFYSKC 50
Query: 61 --------LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
+ D + P V+W S++ + NGL ++ F M GV + P V
Sbjct: 51 RRPCCARRVFDEIPDPCH-VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFSLPVV 109
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
LK + D R G VHA + G D++ NAL+ MY MD
Sbjct: 110 LKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK +Q+H + K + ++ L+ +Y + + D+ + D +
Sbjct: 305 TLSSILKACAGTGAFDLGRQIHGFMIKVNADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++I C+ G E+L+ F + G+ + +VLKS L
Sbjct: 365 -FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLTAVLKSTASLEAASTT 423
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
VHA ++G D + N L++ Y
Sbjct: 424 RQVHALAEKIGFIFDAHVVNGLIDSY 449
>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
Length = 753
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL + +K+ ++ +QLH I L+ +L+ Y+ FNL+ D+ + +
Sbjct: 105 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN-SNI 163
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P W +I +NG ++L+ + +M+ G+ PD+ +PSVLK+C +D FG+ V
Sbjct: 164 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 223
Query: 129 HACIIRLGVDLDLYTNNALMN--------MYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
H I + LY + + N M+A+ +++ I++ G G E
Sbjct: 224 HESI-----NASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALE 278
Query: 181 VLDKIPERNG---NVELSSGLAGCN 202
+L ++ + +V L GL C+
Sbjct: 279 LLSQMRKCGSHLDSVALIIGLGACS 303
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LL L + W SII C E+ M+ G+ P++ SVL C +
Sbjct: 348 LLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVA 407
Query: 121 DFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQS 154
+ + G+ H + R D L NAL++MYA+S
Sbjct: 408 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 442
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ + K +H+Q+ + + + ++ +Y + D+ + + + P V+W +
Sbjct: 217 VESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHP-NTVSWNA 275
Query: 77 IIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
I+ CTQ+G VE+L F RM + G+ PD F ++L +C+ FGE +H CI++
Sbjct: 276 IVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQC 335
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G D L N +M MY+ +D
Sbjct: 336 GYDTHLIVGNCIMTMYSSCGRID 358
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L +I S+ K LH + + + + + L+ +Y V D+ + D L
Sbjct: 105 TFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I Q+ VE+L F RM SGV P+ + + + +C + G
Sbjct: 165 ALQ-DVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADG 223
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H+ ++ G + D+ + A++NMY + +++ EV +++
Sbjct: 224 KLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLE------------------DAREVFERM 265
Query: 186 PERNGNVELSSGLAGCNK 203
P N V ++ +A C +
Sbjct: 266 PHPN-TVSWNAIVAACTQ 282
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 46 LFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
+ +Y V D++ + +L P+ V+W S++ ++G ++ F RM G+ PD
Sbjct: 44 IHMYGKCGCVEDAVSVFQSLDHPSQ-VSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPD 102
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F +VL C+ + D G+ +H ++ G++ ++ +L+ MY +
Sbjct: 103 RITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGK 150
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
FL+S L+ +++ + V ++ L D +K V W SII Q+G ++L C M
Sbjct: 440 FLVSALINMHSRYGNVREARSLFDDMKDR-DIVMWTSIISSYVQHGSSDDALGCTRLMRL 498
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ + + L +C L G+ +HA I G NAL+NMYA+
Sbjct: 499 EGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAK 552
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I +L S T + + LH I + + + ++ +Y++ + ++ T+
Sbjct: 308 TFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTM 367
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W +II Q G E++ F RM+ G+ PD F S++ + + +
Sbjct: 368 -VERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEAKI- 425
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ ++ GV+LD++ +AL+NM+++ N+
Sbjct: 426 --LSELMVESGVELDVFLVSALINMHSRYGNV 455
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ L S+ S+ K +HA + S + + L+ +Y + ++ +
Sbjct: 507 TLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFH-- 564
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +I Q E+L F M G+ D F +VL C+ + G
Sbjct: 565 QCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASE---G 621
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+H ++ G++ D + AL+NMY S+++D I+ R +
Sbjct: 622 RKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRME 664
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ S+ +++H + +T + + + LL +Y + ++ + ++ V+W ++I
Sbjct: 617 SASEGRKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFR-DIVSWNAMI 675
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK--SCTLLVDFRFGESVHACIIRLG 136
++GL E++ F RM GV PD F +VL S + + V I G
Sbjct: 676 AGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQG 735
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+ D NA+++M+ +S GR A ++I ER+
Sbjct: 736 YETDTIVGNAIVSMFGRS------------------GRLAEARRAFERIRERDA 771
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 48/218 (22%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL----------FIYNN--FN 53
T I+LLK S K+ SQ KQ+ A IF R ++++L+ F Y N FN
Sbjct: 10 TYISLLK---SCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFN 66
Query: 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+H + L +I+ + G L +++ F ++ GV+PD+ +P VL
Sbjct: 67 HIHHPSLFIYNL-----------MIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVL 115
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173
K + + R GE +HA +++ G++ D Y N+LM+MYA+ +GF
Sbjct: 116 KGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAE--------LGLVEGF----- 162
Query: 174 REASVHEVLDKIPERNG---NVELSSGLAGCNKFEKRV 208
+V +++PER+ N+ + SG C +FE+ V
Sbjct: 163 -----TQVFEEMPERDAVSWNI-MISGYVRCKRFEEAV 194
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
++ LL + Q K +H I + + + L+ +Y + SL + + LK
Sbjct: 344 VVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLK 403
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W SII NG E+L F M G+ PD F +VL +C
Sbjct: 404 -DMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACG--------- 453
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
HA ++ G L +++ ++Y N++ Y F G E++ K+P
Sbjct: 454 --HAGLVEEGRKL----FHSMSSIYHIEPNLEH--YGCFIDLLGRAGLLQEAEELVKKLP 505
Query: 187 ERNGNV 192
++N +
Sbjct: 506 DQNNEI 511
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++P+ V W ++I Q +++ F M GV PD + ++L C L
Sbjct: 300 RSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQ 359
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H I + +D + AL+ MYA+
Sbjct: 360 GKWIHNYIDENRIKMDAVVSTALIEMYAK 388
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Query: 14 PVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
P+ +K + Q+HA T F+ + L+ +Y F +V ++ + D
Sbjct: 107 PIVLKCAPDVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERN 166
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W +I +N +++ F M+ SG P+ F V+ +CT D+ G VH
Sbjct: 167 AVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHG 226
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
++R G D D++T NAL++MY++ +++M A+V V +KIP +
Sbjct: 227 MVVRTGYDKDVFTANALVDMYSKLGDIEM----------------AAV--VFEKIPAAD- 267
Query: 191 NVELSSGLAGCNKFEKRVVSAGHD 214
V ++ +AGC V+ GHD
Sbjct: 268 VVSWNALIAGC-------VTHGHD 284
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
+Q+H + +T F + L+ +Y+ + + + + K PA V +W ++I C
Sbjct: 221 GRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFE--KIPAADVVSWNALIAGC 278
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+G +L ++M GV P+ SVLK+C F G +H +I+ D D
Sbjct: 279 VTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDE 338
Query: 142 YTNNALMNMYAQSQNMD 158
+ L++MYA+ +D
Sbjct: 339 FVAVGLVDMYAKDGFLD 355
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTL------KTPAP-PVAWKSIIRCCTQNGLLVE 89
+S L S LL Y+N L S C L + + P P V+W S++ + NG+ +
Sbjct: 27 HSHLLKSGLLASYSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRD 86
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
+L F M G GV + P VLK D RFG VHA + + D++ NAL+
Sbjct: 87 ALWAFRSMRGRGVPCNEYALPIVLKCAP---DVRFGAQVHALAVATRLIQDVFVTNALVA 143
Query: 150 MYA 152
MY
Sbjct: 144 MYG 146
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ KQ+HA K + +++ L+ Y + ++ + +
Sbjct: 408 TLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEE- 466
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ S++ +Q +++ FV+M+ G+ PD V S+L +C L + G
Sbjct: 467 SCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQG 526
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS---QNMDMHIYDRFQGFGFNG---------- 172
+ VHA +I+ D++ NAL+ YA+ ++ DM F G G
Sbjct: 527 KQVHAHLIKRQFTSDVFAGNALVYTYAKCGSIEDADM----AFSGLPEKGVVSWSAMIGG 582
Query: 173 ------GREA--SVHEVLDKIPERNGNVELSSGLAGCN 202
G+ A H +LD+ N N+ L+S L+ CN
Sbjct: 583 LAQHGHGKRALELFHRMLDEGVAPN-NITLTSVLSACN 619
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + +Q+H + K + F+ L+ +Y + D+ + D +
Sbjct: 305 TLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFM 364
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFR 123
+ W ++I C+ +G E L+ F RM G+ D N +VLKS L
Sbjct: 365 PRR-DLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAIC 423
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ VHA ++G+ D + N L++ Y + +D I
Sbjct: 424 HTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAI 461
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI---YNNFNLVHDS 58
+S+K + LL +++ +Q KQ HAQ+ K+ NS F++SRLL N +L H +
Sbjct: 3 SSSKRCLLLLHKCINM---NQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSH-A 58
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L ++ P + + ++I+ G + ++ F + +G++PD P VLK+
Sbjct: 59 FKLFQHIQHPTICI-FNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASAR 117
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
+ + GES+HAC I+LG ++ + N+L+ MY NM S
Sbjct: 118 MTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMR------------------SA 159
Query: 179 HEVLDKIPE 187
+V D++PE
Sbjct: 160 RQVFDEMPE 168
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q+F + S + +++ Y N V + L D + T W ++I QN
Sbjct: 161 QVFDEMPELSAVSWTVMIYGYANMGDVDTARELFD-MATVKDTGIWGAMISGYVQNNCFK 219
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E L F M + V PD + ++L +C + G +H + RLG+ L L + L+
Sbjct: 220 EGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLI 279
Query: 149 NMYAQSQNMDMHIY 162
+MYA+ ++D+ Y
Sbjct: 280 DMYAKCGHLDLAKY 293
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ + NLL + ++ Q QLHA I K + L+ +Y+ L SL + D
Sbjct: 26 RQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFD- 84
Query: 65 LKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+TP W S+I QN + +L F RM+ GV PD +++PS K+C L
Sbjct: 85 -ETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G+SVH ++ G D++ ++L++MYA+ G + D
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVGSSLVDMYAKC------------------GEIGDARHLFD 185
Query: 184 KIPERN---------GNVELSSGLAGCNKFEKRVV 209
++PERN G +L G+ F++ ++
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ + NLL + ++ Q QLHA I K + L+ +Y+ L SL + D
Sbjct: 26 RQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFD- 84
Query: 65 LKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+TP W S+I QN + +L F RM+ GV PD +++PS K+C L
Sbjct: 85 -ETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G+SVH ++ G D++ ++L++MYA+ G + D
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVGSSLVDMYAKC------------------GEIGDARHLFD 185
Query: 184 KIPERN---------GNVELSSGLAGCNKFEKRVV 209
++PERN G +L G+ F++ ++
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH I + FL+S+L+ Y++ + ++ L++T P +W +I
Sbjct: 98 GKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVET-SNLFRPCSWNILITSYV 156
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++ L ++ + +M+ GV PD+ FPS+LK+C + +FG VH I L+
Sbjct: 157 KHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLF 216
Query: 143 TNNALMNMYAQSQNMD 158
+NAL++MY + +D
Sbjct: 217 VHNALISMYGRCGEVD 232
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S++ T G + E+L F ++ GV PD+ F S+L C + D + G H C
Sbjct: 383 ITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFH-C 441
Query: 132 IIRLGVDL--DLYTNNALMNMYAQ--------------SQNMDMHIYDRFQGFGFN--GG 173
I D L NAL++MYA+ S+ ++ G+G GG
Sbjct: 442 YITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGG 501
Query: 174 REASVHEVLDKIPERNGNVELSSGLAGCN 202
+ + E + + + ++ + + L+ C+
Sbjct: 502 KAVRLFEEMKRFQIKPDHITMIAVLSACS 530
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W I C + G ++L +M G++ D L +C+ + R G+ +H
Sbjct: 282 VTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGF 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
IR + NAL+ MYA+ +++ H Y F+
Sbjct: 342 TIRHYHHMLSTVQNALVTMYARCKDIR-HAYMLFR 375
>gi|297845310|ref|XP_002890536.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336378|gb|EFH66795.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 687
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +Q+HA + L+ +L+ Y+ FNL+ ++ + +
Sbjct: 87 SLLSTCVGFSEFVPGQQIHAHCISSGLEFDPVLVPKLVTFYSAFNLLDEAQTITEN-SDI 145
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ PD +PSVLK+C L+DF +G V
Sbjct: 146 LHPLPWNVLIDSYVRNKRFEESVSVYKRMMSKGIQPDEFTYPSVLKACGALLDFAYGRVV 205
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H + LY NAL++MY + +D+ ++DR
Sbjct: 206 HGSVEVSSHRCSLYVCNALISMYKRFGKVDVARKLFDR 243
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SII N E+ M+ SG +P++ S+L C + + + G+ H I+
Sbjct: 376 WNSIISGYAHNERSEETSFLLKEMLLSGFHPNYITLASILPLCARVANLQHGKEFHCYIL 435
Query: 134 RLGVDLD-LYTNNALMNMYAQS 154
R D L N+L++MYA+S
Sbjct: 436 RRQSYKDCLILWNSLVDMYAKS 457
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI---YNNFNLVHDS 58
+S+K + LL +++ +Q KQ HAQ+ K+ NS F++SRLL N +L H +
Sbjct: 3 SSSKRCLLLLHKCINM---NQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSH-A 58
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L ++ P + + ++I+ G + ++ F + +G++PD P VLK+
Sbjct: 59 FKLFQHIQHPTICI-FNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASAR 117
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
+ + GES+HAC I+LG ++ + N+L+ MY NM S
Sbjct: 118 MTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMR------------------SA 159
Query: 179 HEVLDKIPE 187
+V D++PE
Sbjct: 160 RQVFDEMPE 168
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q+F + S + +++ Y N V + L D + T W ++I QN
Sbjct: 161 QVFDEMPELSAVSWTVMIYGYANMGDVDTARELFD-MATVKDTGIWGAMISGYVQNNCFK 219
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E L F M + V PD + ++L +C + G +H + RLG+ L L + L+
Sbjct: 220 EGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLI 279
Query: 149 NMYAQSQNMDMHIY 162
+MYA+ ++D+ Y
Sbjct: 280 DMYAKCGHLDLAKY 293
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H I K L + FL LL +Y N D+ L + P + W +II
Sbjct: 670 GRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
TQNG E+L + M + PD F SVL++C++L G +H+ I +G+D D
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDE 789
Query: 142 YTNNALMNMYAQSQNM 157
T +A+++MYA+ +M
Sbjct: 790 LTGSAVVDMYAKCGDM 805
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ TL ++L S++ + +HAQ K ++ ++ S L+ +Y + + +
Sbjct: 347 STRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKV 406
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D L V W +++ QNG + + F M G G +PD + S+L +C L
Sbjct: 407 FDALD-ERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLEC 465
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H+ II+ + +L+ N L++MYA+
Sbjct: 466 LEMGRQLHSFIIKHNFEYNLFVENTLVDMYAK 497
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+K +HAQ K + L S ++ +Y V + + L+ +AW S++ +
Sbjct: 100 SKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLE-KRDILAWNSVLSMYS 158
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G L + + CF + GV P+ + VL SC LVD G+ VH +I++G + + +
Sbjct: 159 RQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF 218
Query: 143 TNNALMNMYAQ 153
+L++MY++
Sbjct: 219 CEGSLIDMYSK 229
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ +QLH+ I K + F+ + L+ +Y + ++ + +
Sbjct: 452 TYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFI 511
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II Q E+ F RMI G+ PD S+L C L G
Sbjct: 512 RNR-DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQG 570
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
E VH +++ G+ LY ++L++MY + ++ Y
Sbjct: 571 EQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARY 607
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +I + G +E++ F M +GV + SVL + L +G VHA
Sbjct: 315 VAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQ 374
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+ G++ ++Y ++L+NMYA+ + M+ + +V D + ERN
Sbjct: 375 AIKQGLNSNVYVGSSLINMYAKCEKME------------------AAKKVFDALDERN 414
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L ++L +++ Q +Q+H + K+ + S L+ +Y + + + +
Sbjct: 553 SLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCM 612
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V+ +II QN L VE++ F M G+ P F S+L +CT G
Sbjct: 613 PSRSV-VSMNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLG 670
Query: 126 ESVHACIIRLGVDLDL-YTNNALMNMYAQSQ 155
+H I + G+ D + +L+ MY SQ
Sbjct: 671 RQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQ 701
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + K + F L+ +Y+ + D+ + D + P V+W ++I
Sbjct: 201 GKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDP-DTVSWTAMIAGYV 259
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
Q GL E+L F M G+ PD F +V+ +C L
Sbjct: 260 QVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL 296
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M + N PV +K A+ Q+HA T + F+ + L+ +Y F + D
Sbjct: 94 MRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + + + V+W ++ +N +++ F M+ SG+ P F V+ +CT
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G VHA ++R+G D D++T NAL++MY + +D+
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + + F + L+ +Y V + + + + + V+W ++I C
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD-SDVVSWNALISGCV 279
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ S+LK+C+ F G +H +I+ D D Y
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339
Query: 143 TNNALMNMYAQSQNMD 158
L++MYA++ +D
Sbjct: 340 IGVGLVDMYAKNHFLD 355
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S +Q+HA K +++ L+ Y + + D+ + +
Sbjct: 406 TLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEEC 465
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +A S+I +Q ++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 466 SS-GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D + NAL+ YA+ +++
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ +L
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ G+ P+H SVL +C
Sbjct: 567 PERGV-VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 6/158 (3%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S T+ L + + LHA + K+ S + L+ Y+ +
Sbjct: 1 MRSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARR 58
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + P V+W S++ + NGL ++ F M GV + P VLK +
Sbjct: 59 VFDEIPDPCH-VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VP 114
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D R G VHA + G D++ NAL+ MY MD
Sbjct: 115 DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK +Q+H + K + ++ L+ +Y + + D+ + D +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++I C+ G E+L+ F + G+ + +VLKS L
Sbjct: 365 -FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT 423
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
VHA +++G D + N L++ Y
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSY 449
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M + N PV +K A+ Q+HA T + F+ + L+ +Y F + D
Sbjct: 94 MRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + + + V+W ++ +N +++ F M+ SG+ P F V+ +CT
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G VHA ++R+G D D++T NAL++MY + +D+
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + + F + L+ +Y V + + + + + V+W ++I C
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD-SDVVSWNALISGCV 279
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ S+LK+C+ F G +H +I+ D D Y
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339
Query: 143 TNNALMNMYAQSQNMD 158
L++MYA++ +D
Sbjct: 340 IGVGLVDMYAKNHFLD 355
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S +Q+HA K +++ L+ Y + + D+ + +
Sbjct: 406 TLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEEC 465
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +A S+I +Q ++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 466 SS-GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D + NAL+ YA+ +++
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ +L
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ G+ P+H SVL +C
Sbjct: 567 PERGV-VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S T+ L + + LHA + K+ S + L+ Y+ +
Sbjct: 1 MRSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARR 58
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
D + P V+W S++ + NGL ++ F M GV + P VLK +
Sbjct: 59 FFDEIPDPCH-VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VP 114
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D R G VHA + G D++ NAL+ MY MD
Sbjct: 115 DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK +Q+H + K + ++ L+ +Y + + D+ + D +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++I C+ G E+L+ F + G+ + +VLKS L
Sbjct: 365 -FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT 423
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
VHA +++G D + N L++ Y
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSY 449
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M + N PV +K A+ Q+HA T + F+ + L+ +Y F + D
Sbjct: 1 MRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 60
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + D + V+W ++ +N +++ F M+ SG+ P F V+ +CT
Sbjct: 61 ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 120
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G VHA ++R+G + D++T NAL++MY + +D+
Sbjct: 121 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 162
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + + F + L+ +Y V + + + + + V+W ++I C
Sbjct: 128 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM-PDSDVVSWNALISGCV 186
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ + S+LK+C F G +H +I+ D D Y
Sbjct: 187 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY 246
Query: 143 TNNALMNMYAQSQNMD--MHIYD 163
L++MYA++ +D M ++D
Sbjct: 247 IGVGLVDMYAKNHFLDDAMKVFD 269
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S +Q+HA K +++ L+ Y + + D++ + +
Sbjct: 313 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 372
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +A S+I +Q ++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 373 SS-GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 431
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D + NAL+ YA+ +++
Sbjct: 432 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 464
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ +L
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 473
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ G+ P+H SVL +C
Sbjct: 474 PERGV-VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 523
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++LK +Q+H + K + ++ L+ +Y + + D++ + D +
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM- 271
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + W ++I C+ G E+ + F + G+ + +VLKS L
Sbjct: 272 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 331
Query: 127 SVHACIIRLGVDLDLYTNNALMNMY 151
VHA ++G D + N L++ Y
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSY 356
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 73/136 (53%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQ+HA KT ++ F+++ L+ +Y + ++ L + V W +++
Sbjct: 156 KGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGY 215
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+QNG +++ CF M G G+ + FPS+L +C + FG VH CI+R G ++
Sbjct: 216 SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV 275
Query: 142 YTNNALMNMYAQSQNM 157
+ +AL++MY++ ++
Sbjct: 276 FVGSALVDMYSKCGDL 291
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L SI Q+H I ++ + F+ S L+ +Y+ + ++ +L+T+
Sbjct: 242 TFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETM 301
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ PV+W S+I C + GL E+L+ F M + D +PSVL + ++D R
Sbjct: 302 EVD-DPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNA 360
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
SVH+ I++ G + NNAL++MYA+ D + +D F+
Sbjct: 361 MSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFD-YAFDVFE 400
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A +H+ I KT + + + L+ +Y + + + + T ++W S++ C
Sbjct: 360 AMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKM-TDKDVISWTSLVTGCV 418
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E+L F M G++PD V +VL +C L FG+ VHA ++ G+ L
Sbjct: 419 HNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLS 478
Query: 143 TNNALMNMYAQ 153
+N+L++MYA+
Sbjct: 479 VDNSLVSMYAK 489
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S+I + G VE+L F M G P+ + SVL+ C++ V G+ +HA
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQ 155
I+ D + + L++MYA+ +
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCK 187
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA K+ + + + L+ +Y+ LV D L + +K ++W SII
Sbjct: 171 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-DLISWGSIIAGFA 229
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F +MI G + P+ F S ++C + + +GE +H I+ +D DL
Sbjct: 230 QQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDL 289
Query: 142 YTNNALMNMYAQSQNMD 158
Y +L +MYA+ +N+D
Sbjct: 290 YVGCSLSDMYARFKNLD 306
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV+W S+I QNG ++L F M+ SG D S +++CT L D G VHA
Sbjct: 117 PVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHA 176
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ DL NAL+ MY+++ +D
Sbjct: 177 HALKSERGSDLIVQNALVTMYSKNGLVD 204
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
++ + +Q+H K ++ L +Y F + + ++ P V+W
Sbjct: 266 AVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAP-DLVSWN 324
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
SI+ + GLL E+L F M SG+ PD +L +C G +H+ +++L
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G+D D+ N+L++MYA+ ++
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDL 406
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + KQ+HA FK + R L + L+ Y + D++ L + +
Sbjct: 458 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+W S+I Q G E+L F RM G+ P+H F VL +C+
Sbjct: 518 GNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACS 569
>gi|51970930|dbj|BAD44157.1| hypothetical protein [Arabidopsis thaliana]
Length = 703
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +QLHA + L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEI- 146
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G V
Sbjct: 147 LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVV 206
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H I +LY NAL++MY + +D+ ++DR
Sbjct: 207 HGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 49 YNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
Y + + ++ LLD + A V W +I C + G + +L C V M V
Sbjct: 260 YTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIG 319
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+ LK+C+ + ++G+ H +IR D+D N+L+ MY++ ++ H +
Sbjct: 320 SVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID-NVRNSLITMYSRCSDL-RHAF 377
Query: 163 DRFQ 166
FQ
Sbjct: 378 IVFQ 381
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 73/137 (53%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ KQ+HA KT ++ F+++ L+ +Y + ++ L + V W +++
Sbjct: 155 EKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTG 214
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+QNG +++ CF M G G+ + FPS+L +C + FG VH CI+R G +
Sbjct: 215 YSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGAN 274
Query: 141 LYTNNALMNMYAQSQNM 157
++ +AL++MY++ ++
Sbjct: 275 VFVGSALVDMYSKCGDL 291
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S+I + G VE+L F M G P+ + SVL+ C++ V G+ +HA
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQ 155
I+ D + + L++MYA+ +
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCK 187
>gi|15220977|ref|NP_173696.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|145323986|ref|NP_001077582.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75316139|sp|Q4V389.1|PPR55_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g22830
gi|66792712|gb|AAY56458.1| At1g22830 [Arabidopsis thaliana]
gi|332192171|gb|AEE30292.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332192172|gb|AEE30293.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 703
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +QLHA + L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEI- 146
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G V
Sbjct: 147 LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVV 206
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H I +LY NAL++MY + +D+ ++DR
Sbjct: 207 HGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 49 YNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
Y + + ++ LLD + A V W +I C + G + +L C V M V
Sbjct: 260 YTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIG 319
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+ LK+C+ + ++G+ H +IR D+D N+L+ MY++ ++ H +
Sbjct: 320 SVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID-NVRNSLITMYSRCSDL-RHAF 377
Query: 163 DRFQ 166
FQ
Sbjct: 378 IVFQ 381
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T +++ + +Q+H+ K + F+ L+ +Y+ + D+ C+ D
Sbjct: 218 SRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFD 277
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ V W SII +G E+L+ + M SG DH V++ C L
Sbjct: 278 QMPEKTT-VGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLE 336
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFG 169
+ + HA ++R G D D+ N AL++ Y++ M+ H+++R + G+G
Sbjct: 337 YAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYG 396
Query: 170 FNGGREASV 178
+G E +V
Sbjct: 397 NHGQGEEAV 405
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ KT N+ + +SRLL + NF+ + ++ + +T++ P + W
Sbjct: 13 KTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLI-W 71
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V ++ +V MI G+ P+ FP +LKSC L + G+ +H +++
Sbjct: 72 NTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLK 131
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LG +LDLY + +L++MY ++ GR H+V D R+
Sbjct: 132 LGYELDLYVHTSLISMYVKN------------------GRWKDAHKVFDGSSHRD 168
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II G E+L F M+ + V PD + +V+ +C + G VH+
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSW 260
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G+ +L NAL+++Y++
Sbjct: 261 IDDHGLGSNLKIVNALIDLYSK 282
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ I ++ +++ L+ +Y+ V + L L ++W ++I T
Sbjct: 254 GRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK-DVISWNTMIGGYT 312
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL--GVDLD 140
L E+L F M+ SG P+ S+L +C L FG +H I + GV
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNA 372
Query: 141 LYTNNALMNMYAQSQNMD 158
+L++MYA+ +++
Sbjct: 373 SSLRTSLIDMYAKCGDIE 390
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 18 KTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA--W 74
KT +QAK LH Q I NS ++ L++ Y + N + +++ LL+ TP+ W
Sbjct: 35 KTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWW 94
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IR +L F RM PDH FP V K+C + +F G S+H C+IR
Sbjct: 95 NQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIR 154
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNG 172
LG + +++ NA+++MY + + + +H F + G
Sbjct: 155 LGFESNVFVCNAVISMYGKCKAV-VHARKVFDELCYRG 191
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-------EPNSRFLISRLLFIYNNFNLVHDS 58
TL++LL S+ K+ H K + + + +I+ L+ +Y + +
Sbjct: 369 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 428
Query: 59 LCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM--IGSGVYPDHNVFPSVLKS 115
+ D + V W +I Q+G +L F M I + + P+ VL +
Sbjct: 429 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMA 488
Query: 116 CTLLVDFRFGESVHACIIRLG-VDLD-LYTNNALMNMYAQSQNMD 158
C L +FG+ +HA ++R +D D L+ N L++MY++S ++D
Sbjct: 489 CARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVD 533
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVL 113
V D LC + V W SI+ + + +++ F M +G G+ PD ++L
Sbjct: 183 VFDELCY----RGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNIL 238
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C L G VH +R G+ D++ NAL++MYA+ M+
Sbjct: 239 PVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKME 283
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 49 YNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
Y+ D+L L + K + V W S+I Q G E++ F +M G P+
Sbjct: 307 YSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPN 366
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-------DLYTNNALMNMYAQSQNMD 158
S+L +C + G+ H ++ + DL NAL++MYA+ ++++
Sbjct: 367 VVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLE 426
Query: 159 M 159
+
Sbjct: 427 V 427
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSII 78
K+Q +Q+HA++ S FLI++L+ +++ + + + D L P P V W +II
Sbjct: 34 KAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDL--PRPQVFPWNAII 91
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
R ++N ++L + +M + V PD FP +LK+C L + G VHA + RLG +
Sbjct: 92 RGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFE 151
Query: 139 LDLYTNNALMNMYAQSQNM 157
D++ N L+ +YA+ + +
Sbjct: 152 ADVFVQNGLIALYAKCRRL 170
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 19/216 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +HAQ+F+ F+ + L+ +Y + + + + L
Sbjct: 121 TFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGL 180
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V+W +I+ QNG VE+L F +M V PD SVL + T L D
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQ 240
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGF 170
G S+HA ++++G++ + +L MYA+ + ++D+ + G+
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 171 NGGREASV---HEVLDKIPERNGNVELSSGLAGCNK 203
NG + ++ HE+++K R + ++S ++ C +
Sbjct: 301 NGFAKDAIDLFHEMINK-DVRPDTISITSAISACAQ 335
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 14 PVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
P+ +K A Q+HA T F+ + L+ +Y F V ++ + D
Sbjct: 107 PIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRN 166
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++ +N +++ F M+ SGV P+ F V+ +CT D G VHA
Sbjct: 167 AVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHA 226
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
++R G D D++T NAL++MY++ ++ M
Sbjct: 227 MVVRTGYDKDVFTANALVDMYSKLGDIHM 255
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 11 LKNPVSIK---TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL-- 65
+++P SI T+ A Q +F ++ L S LL + N L S C L
Sbjct: 1 MRSPESISPLLTRYAATQ---SLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSAR 57
Query: 66 ----KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+TP P V+W S++ + N L E+L F M GV + P VLK
Sbjct: 58 RVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP--- 114
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
D G VHA + G+ D++ NAL+ MY GFGF
Sbjct: 115 DAGLGVQVHAVAVSTGLSGDIFVANALVAMYG--------------GFGF 150
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S Q+HA K + +++ L+ Y N + + + +
Sbjct: 408 TLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEE- 466
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +A+ S+I +Q +++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 467 HSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 526
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D++ NAL+ YA+ +++
Sbjct: 527 KQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIE 559
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+H + K + ++ L+ +Y + L+ D+ + + + + W ++I C+
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNALISGCSH 383
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ESL+ F RM G + +VLKS L VHA ++G D +
Sbjct: 384 GGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHV 443
Query: 144 NNALMNMY 151
N L++ Y
Sbjct: 444 VNGLIDSY 451
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K F + L++ Y + D+ L
Sbjct: 509 VLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGL 568
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ + P+H SVL +C
Sbjct: 569 PDKGV-VSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCAC 618
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
+++HA + +T F + L+ +Y+ +H + L K P V +W + I C
Sbjct: 221 GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIH--MAALVFGKVPKTDVVSWNAFISGC 278
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK--SCTLLVDFRFGESVHACIIRLGVDL 139
+G +L ++M SG+ P+ S+LK + F G +H +I+ D
Sbjct: 279 VLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADS 338
Query: 140 DLYTNNALMNMYAQSQNMD 158
D Y AL++MYA+ +D
Sbjct: 339 DDYIGVALVDMYAKYGLLD 357
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL ++L+ ++ K +H K + F+ + L+ +Y+ + ++ L
Sbjct: 133 SQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLF 192
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+L V W +++ QNG ++++ CF M G+ +H FPS+L +CT + +
Sbjct: 193 FSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAY 252
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
FG VH CII G ++Y +AL++MYA+ ++
Sbjct: 253 AFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDL 287
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T ++L SI + +Q+H I+ PN ++ S L+ +Y + + +LDT
Sbjct: 238 TFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSALVDMYAKCGDLASARMILDT 296
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V W S+I C +G + E+L F +M + D +PSVLKS + +
Sbjct: 297 MEID-DVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKI 355
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
GESVH+ I+ G D +NAL++MYA+ N+
Sbjct: 356 GESVHSLTIKTGFDACKTVSNALVDMYAKQGNL 388
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
++F + ++ + ++ Y N + ++ L + +TP + W S++ +NG
Sbjct: 58 KLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFN--ETPIKNSITWSSLVSGYCKNGCE 115
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
VE L F +M G P SVL++C+ L G+ +H I++ ++ +++ L
Sbjct: 116 VEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGL 175
Query: 148 MNMYAQSQ 155
++MY++ +
Sbjct: 176 VDMYSKCK 183
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-NNFNLVHDSLCLLDT 64
T ++LK+ S K + +H+ KT + + + L+ +Y NL C LD
Sbjct: 339 TYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLS----CALDV 394
Query: 65 LKT--PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++W S++ NG ++L F M + V D V V +C L
Sbjct: 395 FNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVI 454
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FG VHA I+ L N+L+ MYA+
Sbjct: 455 EFGRQVHANFIKSSAGSLLSAENSLITMYAK 485
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL ++L+ ++ K +H K + F+ + L+ +Y+ + ++ L
Sbjct: 133 SQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLF 192
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+L V W +++ QNG ++++ CF M G+ +H FPS+L +CT + +
Sbjct: 193 FSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAY 252
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
FG VH CII G ++Y +AL++MYA+ ++
Sbjct: 253 AFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDL 287
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T ++L SI + +Q+H I+ PN ++ S L+ +Y + + +LDT
Sbjct: 238 TFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSALVDMYAKCGDLASARMILDT 296
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V W S+I C +G + E+L F +M + D +PSVLKS + +
Sbjct: 297 MEID-DVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKI 355
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
GESVH+ I+ G D +NAL++MYA+ N+
Sbjct: 356 GESVHSLTIKTGFDACKTVSNALVDMYAKQGNL 388
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-APPVAWKSIIRCCTQNGLL 87
++F + ++ + ++ Y N + ++ L + +TP + W S++ +NG
Sbjct: 58 KLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFN--ETPIXNSITWSSLVSGYCKNGCE 115
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
VE L F +M G P SVL++C+ L G+ +H I++ ++ +++ L
Sbjct: 116 VEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGL 175
Query: 148 MNMYAQSQ 155
++MY++ +
Sbjct: 176 VDMYSKCK 183
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-NNFNLVHDSLCLLDT 64
T ++LK+ S K + +H+ KT + + + L+ +Y NL C LD
Sbjct: 339 TYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLS----CALDV 394
Query: 65 LKT--PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++W S++ NG ++L F M + V D V V +C L
Sbjct: 395 FNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVI 454
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FG VHA I+ L N+L+ MYA+
Sbjct: 455 EFGRQVHANFIKSSAGSLLSAENSLITMYAK 485
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
M + N PV +K A+ Q+HA T + F+ + L+ +Y F + D
Sbjct: 94 MRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + D + V+W ++ +N +++ F M+ SG+ P F V+ +CT
Sbjct: 154 ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G VHA ++R+G + D++T NAL++MY + +D+
Sbjct: 214 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 255
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + + F + L+ +Y V + + + + + V+W ++I C
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD-SDVVSWNALISGCV 279
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ + S+LK+C F G +H +I+ D D Y
Sbjct: 280 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY 339
Query: 143 TNNALMNMYAQSQNMD--MHIYD 163
L++MYA++ +D M ++D
Sbjct: 340 IGVGLVDMYAKNHFLDDAMKVFD 362
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ S +Q+HA K +++ L+ Y + + D++ + +
Sbjct: 406 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 465
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +A S+I +Q ++ F+ M+ G+ PD V S+L +C L + G
Sbjct: 466 SS-GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D + NAL+ YA+ +++
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ +L
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ G+ P+H SVL +C
Sbjct: 567 PERGV-VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S T+ L + + LHA + K S FL S + + ++ C
Sbjct: 1 MRSAGTISQQLTRYAAAQALLPGAHLHANLLK-----SGFLASLRNHLISFYSKCRRPCC 55
Query: 61 ---LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ D + P V+W S++ + NGL ++ F M GV + P VLK
Sbjct: 56 ARRVFDEIPDPCH-VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC-- 112
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ D + G VHA + G D++ NAL+ MY MD
Sbjct: 113 -VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++LK +Q+H + K + ++ L+ +Y + + D++ + D +
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM- 364
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + W ++I C+ G E+ + F + G+ + +VLKS L
Sbjct: 365 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 424
Query: 127 SVHACIIRLGVDLDLYTNNALMNMY 151
VHA ++G D + N L++ Y
Sbjct: 425 QVHALAEKIGFIFDAHVVNGLIDSY 449
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA K+ + + + L+ +Y+ LV D L + +K ++W SII
Sbjct: 154 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-DLISWGSIIAGFA 212
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F MI G + P+ F S ++C + + +GE +H I+ +D DL
Sbjct: 213 QQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDL 272
Query: 142 YTNNALMNMYAQSQNMD 158
Y +L +MYA+ +N+D
Sbjct: 273 YVGCSLSDMYARCKNLD 289
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV+W S+I QNG ++L F M+ SG D S +++CT L D G VHA
Sbjct: 100 PVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHA 159
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ DL NAL+ MY+++ +D
Sbjct: 160 HALKSERGSDLIVQNALVTMYSKNGLVD 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ AP V+W SI+ + GLL E+L F M SG+ PD +L +C
Sbjct: 297 RIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 356
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +H+ +++LG+D D+ N+L++MYA+ ++
Sbjct: 357 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 389
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + KQ+HA FK + R L + L+ Y + D++ L + +
Sbjct: 441 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 500
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+W S+I Q G E+ F RM G+ P+H F VL +C+
Sbjct: 501 GNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACS 552
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HA++ KT N+ + +S+L+ + +F+ + ++ + D+++ P + W
Sbjct: 13 KTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLI-W 71
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP +LK+C FR G+ +H +++
Sbjct: 72 NTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLK 131
Query: 135 LGVDLDLYTNNALMNMYA-------------QSQNMDMHIYDRF-QGFGFNGGREASVHE 180
LG DLDLY + +L+ MY QS + D+ Y +G+ N G S +
Sbjct: 132 LGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN-GYIXSAQK 190
Query: 181 VLDKIPERN 189
+ D+IP ++
Sbjct: 191 MFDEIPVKD 199
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +VL +C G VH+
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSW 260
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y +
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIK 282
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ +L + +Q+H+ I ++ +++ L+ +Y V + L + L
Sbjct: 237 TMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGL 296
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++I T L E+L F M+ SG P+ S+L +C L G
Sbjct: 297 -SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIG 355
Query: 126 ESVHACIIRL--GVDLDLYTNNALMNMYAQSQNMD 158
+H I + GV +L++MYA+ +++
Sbjct: 356 RWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIE 390
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL+ LL +K + K +H + N ++F + L+ +Y N N + D+ L +
Sbjct: 264 TLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFER 323
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V+W S+I +NG ESL F RM G PD F +VL +C + R+
Sbjct: 324 VRWK-DTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRY 382
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF------------QGFGF 170
G S+H+ +++ G D + AL++MY++ ++ ++D G+G
Sbjct: 383 GMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGL 442
Query: 171 NG-GREA 176
+G GREA
Sbjct: 443 HGRGREA 449
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQI--FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
LL++ + K+ Q +QLHA + F LE N+ +L ++L Y L+ + + D +
Sbjct: 65 LLQSFTNTKSFKQGQQLHAHMISFSILENNT-YLNTKLAAFYAGCGLMSQAEVIFDGI-V 122
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
W +IR NGL ++SL + M+ G D+ +P VLK+C L+ G
Sbjct: 123 LKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRR 182
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
VH+ ++ G++ D+Y N+L+ MYA+ +M ++DR
Sbjct: 183 VHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDR 221
>gi|3287676|gb|AAC25504.1| Contains similarity to membrane associated salt-inducible protein
homolog IG002N01.30 gb|2191151 from A. thaliana BAC
gb|AF007269. EST gb|F14461 comes from this gene. Gene
continues on the 3' end of BAC F19G10 gb|AF000657 gene
F19G10.21 [Arabidopsis thaliana]
Length = 435
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +QLHA + L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEI- 146
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G V
Sbjct: 147 LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVV 206
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H I +LY NAL++MY + +D+ ++DR
Sbjct: 207 HGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
A V W +I C + G + +L C V M V + LK+C+ + ++G+
Sbjct: 283 ASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVF 342
Query: 129 HACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
H +IR D+D N+L+ MY++ ++ H + FQ
Sbjct: 343 HCLVIRSCSFSHDID-NVRNSLITMYSRCSDLR-HAFIVFQ 381
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTL----EPNSRFLISRLLFIYNNFNLVH 56
+T+T +LL+ S K+ KQ+HA TL P S L+S L Y
Sbjct: 15 LTATARYQSLLQRCTSRKSIPNTKQIHAHTI-TLGLLSSPYSHHLLSSLAAAYAMCGCAP 73
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKS 115
+ L D L+ P+ +W ++IR T +GL ++L FV+M+ SG +PD+ +P V+K+
Sbjct: 74 HARKLFDELRNPSL-FSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKA 132
Query: 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
C + G +HA + G D D + N+LM MY M++
Sbjct: 133 CGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEV 176
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ + + F+ + L+ +Y N + + + D ++ V+W ++I +NG
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTL-VSWNTMINGYFKNG 203
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ E+L F MIG G+ PD SVL C+ L + G VHA + + D+ N
Sbjct: 204 CVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWN 263
Query: 146 ALMNMYAQSQNMD 158
+L++MYA+ NMD
Sbjct: 264 SLLDMYAKCGNMD 276
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
TL ++L S+ + + LH + + + + L+ +Y NN NL
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKX 386
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+T AP W +II C NGL +++ F +M+ V P+ S+L + L D
Sbjct: 387 SKQRT-AP---WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDL 442
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+ ++H +IR G + L+++Y++ +++ S H +
Sbjct: 443 QQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLE------------------SAHNIF 484
Query: 183 DKIPERNGNV 192
+ IP+++ ++
Sbjct: 485 NGIPKKDKDI 494
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ NG +L M V P+ SVL +C L + G +H
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGW 350
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
IR ++ ++ AL++MYA+ N+++
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNL 378
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA K+ + + + L+ +Y+ LV D L + +K ++W SII
Sbjct: 171 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-DLISWGSIIAGFA 229
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F MI G + P+ F S ++C + + +GE +H I+ +D DL
Sbjct: 230 QQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDL 289
Query: 142 YTNNALMNMYAQSQNMD 158
Y +L +MYA+ +N+D
Sbjct: 290 YVGCSLSDMYARCKNLD 306
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV+W S+I QNG ++L F M+ SG D S +++CT L D G VHA
Sbjct: 117 PVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHA 176
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ DL NAL+ MY+++ +D
Sbjct: 177 HALKSERGSDLIVQNALVTMYSKNGLVD 204
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ AP V+W SI+ + GLL E+L F M SG+ PD +L +C
Sbjct: 314 RIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 373
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +H+ +++LG+D D+ N+L++MYA+ ++
Sbjct: 374 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + KQ+HA FK + R L + L+ Y + D++ L + +
Sbjct: 458 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+W S+I Q G E+ F RM G+ P+H F VL +C+
Sbjct: 518 GNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACS 569
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + K Q + +H+ I K + F+ L+ +Y+ L D++ + T+
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K P V W ++I C Q G ES+ F M P+ S+L + T + ++G
Sbjct: 376 KKP-DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+S+HAC+ + G + D+ +NAL+ MY ++
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKN 463
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
K ++L+ S ++ AK +H I K + P+S +S L+ +Y + + L
Sbjct: 113 KYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVS-LVNVYAKCR--YSAYARLV 169
Query: 64 TLKTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P V+W ++I+ G +S+ F M G+ P+ + LK+C+L +
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G+ +HA +LG+ LDL+ +AL+++YA+ +++
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIEL 266
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL + + +HA ++K + + L+ +Y VHD L +++
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W + + G+ LT F M+ G P+ F S+L SC+ L D +G
Sbjct: 477 -VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VHA II+ +D + + AL++MYA+
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAK 563
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL L S+ + +QLH+ +FK+ + F+ S L+ +Y + ++ L + L
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+AW +II QNG ++LT F M+ G+ PD F +L +C+
Sbjct: 679 -IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I++L + + +Q+HA I K ++ F+ + L+ +Y + D+ + L
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W II Q ++L F +M GV P+ L C+ L G
Sbjct: 578 -SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ + + G D++ +AL++MYA+ M+
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCME 669
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSIIR 79
KQ+HAQ FK F+ S L+ +Y + L + P V W ++
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE----LASKMFIGMPEQNDVTWNVLLN 287
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
Q G + L F M+ V + +VLK C + + G+ +H+ II+ G +
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347
Query: 140 DLYTNNALMNMYAQ 153
+ + L++MY++
Sbjct: 348 NEFIGCGLVDMYSK 361
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LL+ + + +QLH I K+ ++ F+ S L+ Y F LV ++ D +
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W ++ C NG+ ++ F M GV D+ F S++ SC +L G
Sbjct: 240 SS-RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLG 298
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH IIRL DLD+ +AL++MY++++N++
Sbjct: 299 KQVHGLIIRLSFDLDVLVASALVDMYSKNENIE 331
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H I + + S L+ +Y+ + D+ D + V+W ++I
Sbjct: 298 GKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVK-NIVSWTTMIVGYG 356
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G E++ MI YPD S+L SC L VHA ++ G + L
Sbjct: 357 QHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLS 416
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGF 168
NAL++ Y++ + I FQ F
Sbjct: 417 IANALVSAYSKCGS----IGSAFQSF 438
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++ LLK + K + +Q+HA I FL+ LFI L+ +L
Sbjct: 28 SAASITTLLK---ACKKREHLEQVHACIIHRGLEQDHFLV--FLFISRAHTLL-STLSYA 81
Query: 63 DTL--KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
++ + AP V W ++I+ Q L +L+ F RM G PD +PSV+K+C+
Sbjct: 82 SSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGT 141
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R G+S+H R GVD DLY +L++MY +
Sbjct: 142 CKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGK 175
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW ++I QNGL ++L F+ M V PD + S++ + L + V +
Sbjct: 288 VAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSY 347
Query: 132 IIRLGVDLDL-YTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREA 176
+ ++ +DL + AL++M A+ NM+ + ++D QG +G E
Sbjct: 348 VSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEE 407
Query: 177 SV 178
+V
Sbjct: 408 AV 409
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPN---SRFLISRLLFIYNNFNLVHD---SLCLLD 63
LL++ K SQ KQ+HA ++ PN + FL SR+L +F+ +HD + + D
Sbjct: 25 LLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRIL----HFSSLHDLNYAYRVFD 80
Query: 64 TLKTPAPPVAWKSIIRCCTQNG---LLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLL 119
+ P W +IR C Q+ L E++ + M+ S +PD++ FP VLK+C L
Sbjct: 81 QVDNPNS-FMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYL 139
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G+ HA +++LG D+Y NN+L++ YA +++ S
Sbjct: 140 FALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLE------------------SAK 181
Query: 180 EVLDKIPERN 189
V DK+P+R+
Sbjct: 182 NVFDKMPQRS 191
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + K Q + +H+ I K + F+ L+ +Y+ L D++ + T+
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K P V W ++I C Q G ES+ F M P+ S+L + T + ++G
Sbjct: 376 KKP-DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+S+HAC+ + G + D+ +NAL+ MY ++
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKN 463
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
K ++L+ S ++ AK +H I K + P+S +S L+ +Y + + L
Sbjct: 113 KYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVS-LVNVYAKCR--YSAYARLV 169
Query: 64 TLKTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P V+W ++I+ G +S+ F M G+ P+ + LK+C+L +
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G+ +HA +LG+ LDL+ +AL+++YA+ +++
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIEL 266
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL + + +HA ++K + + L+ +Y VHD L +++
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W + + G+ LT F M+ G P+ F S+L SC+ L D +G
Sbjct: 477 -VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VHA II+ +D + + AL++MYA+
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAK 563
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL L S+ + +QLH+ +FK+ + F+ S L+ +Y + ++ L + L
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+AW +II QNG ++LT F M+ G+ PD F +L +C+
Sbjct: 679 -IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I++L + + +Q+HA I K ++ F+ + L+ +Y + D+ + L
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W II Q ++L F +M GV P+ L C+ L G
Sbjct: 578 -SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ + + G D++ +AL++MYA+ M+
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCME 669
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSIIR 79
KQ+HAQ FK F+ S L+ +Y + L + P V W ++
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE----LASKMFIGMPEQNDVTWNVLLN 287
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
Q G + L F M+ V + +VLK C + + G+ +H+ II+ G +
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347
Query: 140 DLYTNNALMNMYAQ 153
+ + L++MY++
Sbjct: 348 NEFIGCGLVDMYSK 361
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSII 78
K+ Q++A++ T FLI++L+ +N V + L D K P P V W +I+
Sbjct: 88 KTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFD--KFPDPDVFLWNAIV 145
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
RC +++G ++ + RM + V PD FP VLK+C+ L G VH I R G +
Sbjct: 146 RCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFE 205
Query: 139 LDLYTNNALMNMYAQ 153
D++ N L+ +YA+
Sbjct: 206 SDVFVQNGLVALYAK 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ +++H QIF+ + F+ + L+ +Y + + + L
Sbjct: 179 VLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL-VDR 237
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W SII QNG +E+L F M + V PD SVL++ T + D G+S+H
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C+I++G++ + +L ++YA+
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAK 321
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 18/189 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L+ ++ K +H + K LE LIS L +Y V + +
Sbjct: 276 ALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLIS-LTSLYAKCGHVMVARLFFNQ 334
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ P+ + W ++I +NG E++ F M + PD S + +C +
Sbjct: 335 VENPSL-IFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLEL 393
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGF 170
+ I D+ N +L++ YA+ ++DM ++DR G+G
Sbjct: 394 ARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGL 453
Query: 171 NG-GREASV 178
+G GRE+ +
Sbjct: 454 HGQGRESII 462
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
N L +RL+ +Y DS + D ++T + W +++ T+NGL + + F+
Sbjct: 77 NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK-NLIQWNALVSGYTRNGLYGDVVKVFMD 135
Query: 97 MIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
++ + PD+ FPSV+K+C ++D R GE +H +I++G+ LD++ NAL+ MY +
Sbjct: 136 LVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG 195
Query: 156 NMD--MHIYD 163
+D M ++D
Sbjct: 196 AVDEAMKVFD 205
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K+ K++H + + F+ + LL Y + + L D +
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I +QNGL ESL F + + G+ SV +C+ L R G
Sbjct: 513 KDK-NLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLG 571
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+ H +++ D + ++++MYA+S
Sbjct: 572 KEAHGYVLKALQTEDAFVGCSIIDMYAKS 600
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + K F+ + L+ +Y V +++ + D + V+W S+I ++NG
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFM-PETNLVSWNSMICAFSENG 226
Query: 86 LLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+S + M+G G+ PD ++L C + G +H ++LG+ ++ N
Sbjct: 227 FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVN 286
Query: 145 NALMNMYAQ 153
NA++ MY++
Sbjct: 287 NAMVYMYSK 295
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I QNG ++L +M SG PD S+L +C L ++G+ +H +
Sbjct: 418 SWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYV 477
Query: 133 IRLGVDLDLYTNNALMNMY 151
+R G++ D + +L++ Y
Sbjct: 478 LRNGLETDFFVGTSLLSHY 496
>gi|225436291|ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 906
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
++ S + +H + K F+ + L+ +Y + + D+ + + P V W S
Sbjct: 75 VECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKP-DLVGWSS 133
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
I+ +NGL E L F M+ G+ PD F VL +CT L + FG H II++G
Sbjct: 134 ILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMG 193
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D LY N+LM+ YA+ +++
Sbjct: 194 FDSCLYLENSLMDFYAKCGDLE 215
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+ +LLK + K H+ I K + +++S L+ +Y+ + + + ++
Sbjct: 342 MTSLLKWCSLESSLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVE 401
Query: 67 TP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P AP W ++I + NG E+L F +M G+ + F SV+ +C L + R
Sbjct: 402 QPDTAP---WSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRK 458
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H I+R G + + N L+N+Y++
Sbjct: 459 GKELHCKILRSGYESNFSVVNTLINLYSE 487
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSG---VY 103
+Y N + ++ L D + + V+W ++ ++G E L F M+ GSG +
Sbjct: 1 MYVNAGAMQEARKLFDEMPERSL-VSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLR 59
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
PD VF VL++C ++ +G VH +++ +D + NAL++MY
Sbjct: 60 PDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYG 108
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W + I N +E+L F ++ D S+LK+ + L G+ +H
Sbjct: 230 VSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGY 289
Query: 132 IIRLGVDLDLYTNNALMNMY 151
I+R G++ + Y ++L++MY
Sbjct: 290 ILRAGIETNRYVVSSLLDMY 309
>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
Length = 674
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LL+ + + +QLH I K+ ++ F+ S L+ Y F LV ++ D +
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W ++ C NG+ ++ F M GV D F S++ SC +L G
Sbjct: 240 SS-RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLG 298
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH IIRL DLD+ +AL++MY++++N++
Sbjct: 299 KQVHGLIIRLSFDLDVLVASALVDMYSKNENIE 331
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H I + + S L+ +Y+ + D+ D + V+W ++
Sbjct: 298 GKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVK-NIVSWTTMXVGYG 356
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G E + MI YPD S+L SC L VHA ++ G + L
Sbjct: 357 QHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLS 416
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGF 168
NAL++ Y++ + I FQ F
Sbjct: 417 IANALVSAYSKCGS----IGSAFQSF 438
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLHA + K N L +++L +Y +D + D + V+W ++I C
Sbjct: 92 GKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLK-NVVSWNTLI-CGV 149
Query: 83 QNG-----LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
G L+ CF +M+ + P+ +L++ L D +H I++ G
Sbjct: 150 VEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGF 209
Query: 138 DLDLYTNNALMNMYAQ 153
D + + +AL++ YA+
Sbjct: 210 DSNCFVGSALVDSYAK 225
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T TL LK ++ + +QLHAQ + S ++ + LL +Y V + + D
Sbjct: 126 TFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFD 185
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ VAW ++I ++ G++ E+L F M GV PD V+ +C
Sbjct: 186 GMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALD 245
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VHA I R G+ +DL + AL++MYA+
Sbjct: 246 LGKWVHAYIDRKGITVDLELSTALIDMYAK 275
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+N K + Q KQ+HA + K F+ S +L +Y + + + +
Sbjct: 1140 TLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEI 1199
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+P VAW ++I C +NG +L + +M S V PD F +++K+C+LL G
Sbjct: 1200 PSP-DDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA I++L D + +L++MYA+ N++
Sbjct: 1259 RQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIE 1291
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHA 130
++W ++I CT +GL S+ FV ++ + PD SVL++C+ L + +HA
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHA 1061
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C ++ GV LD + + AL+++Y++ M+
Sbjct: 1062 CAMKAGVVLDSFVSTALIDVYSKRGKME 1089
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A Q+HA K F+ + L+ +Y+ + ++ L + +W +I+
Sbjct: 1056 ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF-VNQDGFDLASWNAIMHGYI 1114
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+G ++L ++ M SG D + K+ LV + G+ +HA +++ G +LDL+
Sbjct: 1115 VSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLF 1174
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+ +++MY + M+ S V +IP + +V ++ ++GC
Sbjct: 1175 VTSGVLDMYLKCGEME------------------SARRVFSEIPSPD-DVAWTTMISGC 1214
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL-KT 67
++L+ ++ S K+ HA+I + RF+ + L+ +Y + + L DT T
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFG 125
V W +I+ + R++ V H + P V K C L
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAP-VFKMCLLSASPSAS 779
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
ES+H +++G+ D++ AL+N+YA+
Sbjct: 780 ESLHGYAVKIGLQWDVFVAGALVNIYAK 807
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W + Q G E++ CFV MI S V D F +L L G+ +H
Sbjct: 901 IVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
++R G+D + N L+NMY ++
Sbjct: 961 VMRSGLDQVVSVGNCLINMYVKA 983
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q +Q+HA I K F+++ L+ +Y + D+ L
Sbjct: 1241 TFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1300
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T +W ++I Q+G E+L F M GV PD F VL +C+
Sbjct: 1301 NTRRI-ASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS 1351
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S+ L +LL+ + K Q KQLH I + F++++L+ +Y + + +
Sbjct: 20 LLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQA 79
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L D L P AW +I+ ++NGL E + + M GV PD VFP V ++C L+
Sbjct: 80 LFDKLSQP-NVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLL 138
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G VH ++ G + DL N+L++MY++S ++
Sbjct: 139 WLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDV 175
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 23 AKQLHAQIFKTLEPNSRF--LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+++H ++++ +S + + LL +Y + D+L + + L V W ++I
Sbjct: 311 GQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFE-LMDRFDVVTWNAMILG 369
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ +L CF +M SG+ + +VL +C D + G+ VHA I +
Sbjct: 370 FVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVHAYITKNSFSSV 425
Query: 141 LYTNNALMNMYAQ 153
+ NAL++MY++
Sbjct: 426 IPVWNALIHMYSK 438
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK VS++ A LHA I+K ++ F+ + L+ Y V+ + D +
Sbjct: 47 ILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACK- 105
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++ C +N +SL F M G P+H F VLK+C L F G+SVH
Sbjct: 106 DMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVH 165
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C+++ ++DLY L+++Y +
Sbjct: 166 GCVLKTCYEMDLYVGVGLLDLYTK 189
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK + ++ S K +H + KT ++ LL +Y F +D L + + +
Sbjct: 144 TFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEM 203
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ E++ F +M + V P+ F SVL+SC + + + G
Sbjct: 204 PKH-DVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG 262
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH ++++G+D +++ +NALM++YA+ +D
Sbjct: 263 KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLD 295
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L++ SI+ KQ+H + K + F+ + L+ +Y + +S+ L L
Sbjct: 245 TFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMEL 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++I Q+G ++L+ + M+ V + SVL++C L G
Sbjct: 305 PNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELG 363
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ ++ D D+ NAL++MYA+
Sbjct: 364 TQIHSLSLKTIYDKDVVVGNALIDMYAK 391
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S T ++L+ S+ Q+H+ KT+ + + L+ +Y + ++ +
Sbjct: 342 ASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLV 401
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
D L + ++W ++I + +GL+ E+L F M + P+ F S+L +C+
Sbjct: 402 FDML-SERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACS 456
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 49/230 (21%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN------------ 53
TL+ +LK S S KQ+H Q+ K + + S LL++Y N
Sbjct: 141 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGL 200
Query: 54 -------------------LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94
++ D+L L ++ + V+W ++I+ QNGL E++ CF
Sbjct: 201 DDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS--VSWAAMIKGLAQNGLAKEAIECF 258
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
M G+ D F SVL +C L G+ +HACIIR +Y +AL++MY +
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318
Query: 155 QNMDMH--IYDRFQ------------GFGFNGGREASVHEVLDKIPERNG 190
+ + ++DR + G+G G E +V LD +R+G
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM--QRSG 366
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQ+HA I +T + ++ S L+ +Y +H + + D +K V+W +++
Sbjct: 288 EGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGY 346
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G E++ F+ M SG+ PDH + +C + G H I G+ +
Sbjct: 347 GQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYV 406
Query: 142 YTNNALMNMYAQSQNMD 158
+N+L+ +Y + ++D
Sbjct: 407 TVSNSLVTLYGKCGDID 423
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L++LL+ S+ +Q Q+HAQ P LI +L+ +++ + + +LD +
Sbjct: 2 LLSLLRTATSL---TQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLD--Q 52
Query: 67 TPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
TP+P +W S+IR T +G SL +++M+ S P + FP VLK+C+ L G
Sbjct: 53 TPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEG 112
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
E +H ++RLG DL+ N+L++MY + +D
Sbjct: 113 EQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLD 145
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95
P + L++ L+ +Y+ V + + D + P +W +II C Q GLL E++ +
Sbjct: 260 PLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLP-SWNAIITGCVQGGLLEEAIDLYR 318
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
M V P+ +VL +C L G VH + R G+DL++ AL++MYA+
Sbjct: 319 HMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCG 378
Query: 156 NMD 158
+D
Sbjct: 379 KID 381
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+HA+I ++ N + L +L+ +Y+ + ++ L ++ P W IIR T
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT-FTWNLIIRANTI 102
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NGL ++L + M+ G+ D FP V+K+CT + G+ VH +I+ G D++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162
Query: 144 NNALMNMY 151
N L++ Y
Sbjct: 163 QNNLIDFY 170
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W S+I + G VE+L F + G+ P + FP +KSC+ L D G H
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
G + DL+ ++AL++MY++
Sbjct: 2042 FVFGFETDLFVSSALIDMYSK 2062
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +N E+L F RM ++P+ S++K+CT + G +H
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ +++ +Y AL++MY++
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSK 304
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 14 PVSIKTKS------QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
P +IK+ S + H Q F F+ S L+ +Y+ + D+ L D +
Sbjct: 2019 PCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPL 2078
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMI--------GSGVYPDHNVFPSVLKSCTLL 119
V+W S+I QN +L F + G+ V D V SVL +C+ +
Sbjct: 2079 -RNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 2137
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E VH +++ G D + N LM+ YA+
Sbjct: 2138 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK 2171
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W S+I Q+GL E+L F M+ GV + +VL +C R G+ +H
Sbjct: 2191 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 2250
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNG-GRE 175
+I++ ++ ++ ++++MY + ++M +DR + G+G +G +E
Sbjct: 2251 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 2310
Query: 176 A 176
A
Sbjct: 2311 A 2311
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++L+K + + + +H K +L + L+ +Y+ + D++ + +T+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P W S+I +GL E+L F M V PD F VL +C + + + G
Sbjct: 319 PRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Query: 126 ESVHACIIR-LGVDLDLYTNNALMNMYAQSQNMD 158
+ + + G+ + +YA+S N+D
Sbjct: 378 CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLD 411
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
S K KQ+HA KT F+ ++LL +Y L+ D+ L +T+ P + +W
Sbjct: 71 SCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETM--PMRNLHSW 128
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
K+I+ +GL E+ F + GV D VFP V K+C+ L G +H +I+
Sbjct: 129 KAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIK 188
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVEL 194
L++Y +NAL++MY + ++D +VL K+PER+ +V
Sbjct: 189 FRFCLNIYVSNALIDMYGKCGSLD------------------DAKKVLVKMPERD-SVTW 229
Query: 195 SSGLAGC 201
+S + C
Sbjct: 230 NSVITAC 236
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLV 120
+D L ++W SII +N + E+ + F M+ G+ PD SVL +C +
Sbjct: 389 MDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTI 448
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
R G+ +HA I G+ D + AL+ MY++ Q++ + + E
Sbjct: 449 SLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLT--------------AAQVAFDE 494
Query: 181 VLDK-IPERNGNVELSSGLAGCNKFEK 206
V++K +P N L SG N+ E+
Sbjct: 495 VMEKDVPTWNA---LISGYTRSNQIER 518
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SI+ +N L ++ F M S + PD +L +C+ L G+ HA I
Sbjct: 538 WNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSI 597
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
+ G D D++ AL++MYA+ ++ YDR
Sbjct: 598 KCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDR 630
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 53 NLVHDSLCLLDTLKT--PAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
+V+++L L+ +K+ + P V+W ++I QNG E++ RM G+ P+
Sbjct: 240 GMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQT 299
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
VL +C L G+ +H I R + NAL+++Y + +M
Sbjct: 300 LAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDM 348
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ T + KQ HA K + + L+ +Y + + D + P V+ +
Sbjct: 583 LATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNL-VSHNA 641
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++ C +G E ++ F M+ G PDH F SVL SC
Sbjct: 642 MLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCV 682
>gi|147842436|emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
Length = 799
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S++T ++L+++ + K SQ +++H + S L++ ++ +Y+ F ++ +
Sbjct: 53 SSETYLSLIRSCIKFKAFSQGREIHKHMVNAGFEPSLVLLNNIMIMYSKFGDFGETFKVF 112
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + +W +I C++NG +++ + +MI SGV D ++P VLKSC + D
Sbjct: 113 EGMDE-RNLFSWTVMIGACSKNGDAEKAIELYGKMISSGVKADCFLYPLVLKSCGAVKDL 171
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
R G+ VH ++ G+ D+ N+L++MY + +
Sbjct: 172 RRGQCVHGEVLITGLLGDVVVMNSLIDMYMKCE 204
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK+ ++K + + +H ++ T +++ L+ +Y +V DS + D +
Sbjct: 161 VLKSCGAVKDLRRGQCVHGEVLITGLLGDVVVMNSLIDMYMKCEMVGDSERVFDEMDV-R 219
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
+ W ++I Q G +E L M+ S V P VL + L + + +H
Sbjct: 220 DVITWTTMIVGYMQMGRGLEGLELLKEMLSSQVRPSSATLAGVLPLFSDLGYLKLAKQIH 279
Query: 130 ACIIRLGVDLDLYTNNALMNMYA 152
G + + + AL+++YA
Sbjct: 280 GLAAVTGFEYEKHVGTALVDVYA 302
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T L++LLK + K Q K +H +I N+ L L+ +Y + +L + +
Sbjct: 3 TTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQ 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDF 122
T++ P W ++ CT+N + +E L F R++ + PD +PSVLK+C+ L
Sbjct: 63 TIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRV 122
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+G+ VH +I+ G +D+ ++ + MYA+
Sbjct: 123 GYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK 153
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
K +H + K+ ++S + +Y N+ D++ L D + P VA W ++I C
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM--PERDVASWNNVISCY 182
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q+G ++L F M SG PD +V+ SC L+D G+ +H ++R G LD
Sbjct: 183 YQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG 242
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGGREASVHEVLDKIPE 187
+ ++AL++MY + ++M ++++ Q G+ G ++ + E+ ++ E
Sbjct: 243 FVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCI-ELFRRMDE 301
Query: 188 ---RNGNVELSSGLAGCNK 203
R LSS L C++
Sbjct: 302 EGIRPTLTTLSSILMACSR 320
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I + G +E+L F M +GV PD F SVL +C+ L G+ +H
Sbjct: 375 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
II ++++ AL++MYA+ +D +HI+++
Sbjct: 435 IIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 470
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++ + + + K++H ++ ++ F+ S L+ +Y + + + + +
Sbjct: 209 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 268
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S+I + G + F RM G+ P S+L +C+ V+ + G
Sbjct: 269 QRKNV-VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 327
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H IIR V+ D++ N++L+++Y + N+
Sbjct: 328 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + K++H I ++ + ++ LL +Y V ++L + + L
Sbjct: 411 TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 470
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G E+L F +M S PD F ++L +C+
Sbjct: 471 -PERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS-------- 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD Y N ++ Y ++ Y GR +E+L +
Sbjct: 522 ---HAGL----VDEGCYYFNQMIAEYGFKPAVEH--YSCLIDLLGRVGRLREAYEILQRT 572
Query: 186 PERNGNVELSSGLAGCNKFEKRV 208
P+ +V L S L K++
Sbjct: 573 PDIREDVGLLSTLFSACHLHKKL 595
>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial; Flags: Precursor
gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
M + T LK + + AK +H QI KT L+P R + LL +Y + D
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP--RVGVG-LLQLYTQLGDMSD 300
Query: 58 SLCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ + + + K P W +I QNG E++ F+RM + V P+ S+L C
Sbjct: 301 AFKVFNEMPKNDVVP--WSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ GE +H ++++G DLD+Y +NAL+++YA+ + MD +
Sbjct: 359 AIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAV 403
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+ LK VS+ LH+ I K ++ F+ + L+ Y+ V + + + +
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W I+ C +NG +SL M +G P++ F + LK+ L F F + V
Sbjct: 211 -DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
H I++ LD L+ +Y Q +M D F+ F
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMS----DAFKVF 305
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
++ S + +H + K F+ + L+ +Y + + D+ + + P V W S
Sbjct: 134 VECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKP-DLVGWSS 192
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
I+ +NGL E L F M+ G+ PD F VL +CT L + FG H II++G
Sbjct: 193 ILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMG 252
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D LY N+LM+ YA+ +++
Sbjct: 253 FDSCLYLENSLMDFYAKCGDLE 274
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 41/188 (21%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL------ 59
+L+++LK + K++H I + +R+++S LL +Y + H+SL
Sbjct: 325 SLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDMYIGC-IDHESLYPRVEV 383
Query: 60 ------------------------CLLDT---------LKTPAPPVA-WKSIIRCCTQNG 85
C L++ + P A W ++I + NG
Sbjct: 384 PLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKRVFTRVEQPDTAPWSALISGHSWNG 443
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L F +M G+ + F SV+ +C L + R G+ +H I+R G + + N
Sbjct: 444 CFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKILRSGYESNFSVVN 503
Query: 146 ALMNMYAQ 153
L+N+Y++
Sbjct: 504 TLINLYSE 511
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-G 99
L + L +Y N + ++ L D + + V+W ++ ++G E L F M+ G
Sbjct: 53 LFNLYLRMYVNAGAMQEARKLFDEMPERSL-VSWTIVMSGYARHGPASEVLMMFWDMLCG 111
Query: 100 SG---VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
SG + PD VF VL++C ++ +G VH +++ +D + NAL++MY
Sbjct: 112 SGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYG 167
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W + I N +E+L F ++ D S+LK+ + L G+ +H
Sbjct: 289 VSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGY 348
Query: 132 IIRLGVDLDLYTNNALMNMY 151
I+R G++ + Y ++L++MY
Sbjct: 349 ILRAGIETNRYVVSSLLDMY 368
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 43 SQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 101
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + G+ VH I++
Sbjct: 102 IRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKH 161
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L++ Y +D+ +V D++PER+
Sbjct: 162 GFSGDVYVNNGLIHFYGSCGCLDL------------------ARKVFDEMPERS 197
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ Y + + + + D + +
Sbjct: 138 VLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERS 197
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 198 L-VSWNSMIDALVRVGEYDSALQLF-RDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSH 255
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
++R + V +D+ N+L+ MY + ++ M FQG
Sbjct: 256 VFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRM-AEQVFQG 295
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 16 SIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
S K S+ +Q+HA + + NS FL +RL+F+Y + D+ L D + P +
Sbjct: 90 SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM--PHKTIFT 147
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I NG + SL + M SG+ D FP +LK+C LL D R+G VH I
Sbjct: 148 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAI 207
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
+ G ++ N+++ MY + ++ NG R ++ D++PE+ V
Sbjct: 208 KEGYVSIVFVANSIVGMYTKCNDL-------------NGAR-----QLFDRMPEKEDVVS 249
Query: 194 LSS 196
+S
Sbjct: 250 WNS 252
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 71/148 (47%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK +K + ++H K + F+ + ++ +Y N ++ + L D +
Sbjct: 186 ILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKE 245
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + NG +E+L F M + + P+ F + L++C + G +H
Sbjct: 246 DVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
A +++ ++++ NAL+ MYA+ M
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKM 333
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +HA + K+ + F+ + L+ +Y F + ++ + + ++W S++
Sbjct: 300 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD-WDTISWNSMLSGF 358
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNGL E+L + M +G PD S++ + + G +HA ++ G+D DL
Sbjct: 359 VQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDL 418
Query: 142 YTNNALMNMYAQ 153
N+L++MYA+
Sbjct: 419 QVGNSLVDMYAK 430
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C NGL E+L F M +GV PD S+L + L + G+ +H
Sbjct: 550 VSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 609
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G L+ + L++MYA+ ++
Sbjct: 610 LIRKGFVLEGSLASTLVDMYARCGTLE 636
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA K + + + L+ +Y F + C+ D + V+W +II QN
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQN 462
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G +L F + G+ D + S+L +C+ L + +H+ IIR G+ DL
Sbjct: 463 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQ 521
Query: 145 NALMNMYAQSQNMD 158
N ++++Y + N+D
Sbjct: 522 NGIVDVYGECGNVD 535
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+HA+I ++ N + L +L+ +Y+ + ++ L ++ P W IIR T
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT-FTWNLIIRANTI 102
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NGL ++L + M+ G+ D FP V+K+CT + G+ VH +I+ G D++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162
Query: 144 NNALMNMY 151
N L++ Y
Sbjct: 163 QNNLIDFY 170
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W S+I + G VE+L F + G+ P + FP +KSC+ L D G H
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G + DL+ ++AL++MY++ G+ + D+IP RN
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKC------------------GQLKDARALFDEIPLRN 1207
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +N E+L F RM ++P+ S++K+CT + G +H
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ +++ +Y AL++MY++
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSK 304
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W S+I Q+GL E+L F M+ GV + +VL +C R G+ +H
Sbjct: 1318 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 1377
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNG-GRE 175
+I++ ++ ++ ++++MY + ++M +DR + G+G +G +E
Sbjct: 1378 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 1437
Query: 176 A 176
A
Sbjct: 1438 A 1438
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 14 PVSIKTKS------QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
P +IK+ S + H Q F F+ S L+ +Y+ + D+ L D +
Sbjct: 1146 PCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPL 1205
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMI--------GSGVYPDHNVFPSVLKSCTLL 119
V+W S+I QN +L F + G+ V D V SVL +C+ +
Sbjct: 1206 -RNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 1264
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E VH +++ G D + N LM+ YA+
Sbjct: 1265 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK 1298
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++L+K + + + +H K +L + L+ +Y+ + D++ + +T+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P W S+I +GL E+L F M V PD F VL +C + + + G
Sbjct: 319 PRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Query: 126 ESVHACIIR-LGVDLDLYTNNALMNMYAQSQNMD 158
+ + + G+ + +YA+S N+D
Sbjct: 378 CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLD 411
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 22/205 (10%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLL--FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQ+H+Q+ KT N+ F +S+L+ + + + + +L L ++ P + W +IIR
Sbjct: 41 KQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQ-IIWNNIIRGL 99
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ + + ++ +V MI SG P+ +P VLKSC + G+ +H I++LG D D
Sbjct: 100 SLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDA 159
Query: 142 YTNNALMNMYAQSQNMDMH--IYDR------------FQGFGFNGGREASVHEVLDKIPE 187
+ + +L+ MY Q+ + +++R G+ G + ++ E+ D+IP
Sbjct: 160 FVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQAL-ELFDEIPV 218
Query: 188 RNGNVELSSGLAG---CNKFEKRVV 209
R+ V ++ +AG +FE+ ++
Sbjct: 219 RD-VVSWNAMIAGYTQSGRFEEALI 242
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 32/193 (16%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVH 56
+T T +LK+ I + + KQ+H QI K N F+ + L+ +Y N LV
Sbjct: 123 NTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVF 182
Query: 57 DSLCLLDTLKTPA------------------------PPVAWKSIIRCCTQNGLLVESLT 92
+ + D + A V+W ++I TQ+G E+L
Sbjct: 183 ERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALI 242
Query: 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
F M+ + V P+ + SVL +C + G V + I G++ ++ NAL++MYA
Sbjct: 243 FFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYA 302
Query: 153 QSQNMD--MHIYD 163
+ +++ +H+++
Sbjct: 303 KCGDLENALHLFE 315
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
LE N + +++ L+ +Y + ++L L + +K ++W +I T E+L
Sbjct: 287 LESNIK-VMNALIDMYAKCGDLENALHLFEGIKNKNV-ISWNVMIGGYTHLSCYKEALGL 344
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA----LMN 149
F +M+ S V P+ S+L +C L G+ +HA I + ++ NNA L++
Sbjct: 345 FRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDK---NMKNLANNALWTSLID 401
Query: 150 MYAQSQNMDM--HIYD 163
MYA+ N+++ I+D
Sbjct: 402 MYAKCGNIEVANQIFD 417
>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 682
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ + +L + S+K Q+HAQ K + ++ S L+ +Y + VHD+ + L
Sbjct: 211 SYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVL 270
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +++ TQN L ++L F+ M GV P+ + L SC L R G
Sbjct: 271 PEK-NVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG 329
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ AC+++ G L +NALMNMY++S +++
Sbjct: 330 NALGACVMKTGHWDHLLVSNALMNMYSKSGSIE 362
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
++++ +Q H K R++ + +L++Y + D+ + +++ + A+
Sbjct: 120 NVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESV-SGFDAFAFN 178
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I G L SL M G D+ + +VL C + D G VHA ++
Sbjct: 179 SMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKK 238
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
++L++Y +AL++MY + H++D + F
Sbjct: 239 RLELNVYVGSALVDMYGKCD----HVHDANRAF 267
>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 607
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++H KT + F+++ L+ +Y + ++ + + + W +++
Sbjct: 137 KGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGY 196
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ NG ++ CF M GV + FPS+L +C + D FG VH CI+R G ++
Sbjct: 197 SHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANI 256
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+ +AL++MYA+ ++++ S + VL+ + E N V +S + GC
Sbjct: 257 FVQSALVDMYAKCRDLN------------------SANRVLENM-EVNDVVSWNSMIVGC 297
Query: 202 NK--FEKRVVS 210
+ FE +S
Sbjct: 298 VREGFEAEALS 308
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + S+K AK H I KT + + L+ +Y + + + + +
Sbjct: 324 TYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQM 383
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S++ + NG +++ F M +GV PD V SVL +C L FG
Sbjct: 384 PDK-DVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFG 442
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
+ VHA I++ G+ L +N+L+ MYA+ ++ +++D Q G+ N
Sbjct: 443 QQVHATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQN 502
Query: 172 GGREASVH 179
G + S+H
Sbjct: 503 GRGKDSLH 510
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I ++ + F+ S L+ +Y ++ + +L+ ++ V+W S+I C +
Sbjct: 242 QVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVN-DVVSWNSMIVGCVRE 300
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E+L+ F M + D +PSVL S + D + +S H II+ G N
Sbjct: 301 GFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVN 360
Query: 145 NALMNMYAQSQNMD 158
NAL++MYA+ N+D
Sbjct: 361 NALVDMYAKQGNLD 374
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-APPVAWKSIIRCCTQNGLL 87
IF L F + ++ Y N + D+ L + P + W S+I +
Sbjct: 43 HIFDKLPERDEFSWNTMIAAYANSGRLTDAKQLF--CEAPLKSSITWSSLISGFCKYEFD 100
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
+E+ +++M G P+H S+L+ C+ + GE +H I+ +D +++ +L
Sbjct: 101 IEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSL 160
Query: 148 MNMYAQSQ 155
+++YA+ +
Sbjct: 161 VDLYAKCE 168
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++L + +Q+HA I K+ +S + + L+ +Y + D+ + D+++
Sbjct: 426 LASVLSACAELTVTEFGQQVHATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQ 485
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W ++I QNG +SL + +MI +G PD F +L +C+
Sbjct: 486 IR-DVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACS 535
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S TL ++L S+ + +HA K +S ++ S L+ +Y + D+ +
Sbjct: 215 SSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQV 274
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + + + W +++ +QNG L + F+ MI G++PD + S+L +C
Sbjct: 275 FDAI-SQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEY 333
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
G +H+ II+ +L+ NNAL++MYA++
Sbjct: 334 LEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKA 366
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 25 QLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H I K L S FL + LL +Y + + D+ L + V W ++I Q
Sbjct: 540 QIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQ 599
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N +L + M + + PD F +VL++C LL G +H+ I G DLD T
Sbjct: 600 NECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELT 659
Query: 144 NNALMNMYAQ 153
++AL++MYA+
Sbjct: 660 SSALVDMYAK 669
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH+ I K ++ F+ + L+ +Y + ++ + + T ++W +II
Sbjct: 337 GRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHM-TYRDHISWNAIIVGYV 395
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q + + + F RMI G+ PD S+L +C + G+ H ++LG++ +L+
Sbjct: 396 QEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLF 455
Query: 143 TNNALMNMYAQSQNM-DMH 160
++L++MY++ ++ D H
Sbjct: 456 AGSSLIDMYSKCGDIKDAH 474
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
L + + SG PD F L +C L + G +VH+C+I+ G++ + AL+++
Sbjct: 32 LQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHL 91
Query: 151 YAQSQNM 157
YA+ ++
Sbjct: 92 YAKCNSL 98
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 2/156 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T + L+ V +A + ++ + P+ L++ +L Y + + D+ L
Sbjct: 115 TVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVT-VLNAYISLGKLDDACQLFQ 173
Query: 64 TLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ P VAW +I + E+L F +M GV + SVL + L
Sbjct: 174 QMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAAL 233
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA I+ G + +Y ++L+NMY + Q D
Sbjct: 234 NHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPD 269
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + + +++H+ IF T S L+ +Y V S+ + + L
Sbjct: 624 TFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEEL 683
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T ++W S+I +NG +L F M S + PD F VL +C+
Sbjct: 684 ATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACS 735
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+ +LL + ++ + +Q+HA I K+ + L+ Y+ L S + + +
Sbjct: 57 ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ W S+I QN V ++ F RMIG + PD ++FPS K+C +L G+
Sbjct: 117 RKSS-TTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGK 175
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
SVH +I+ G D+D++ ++L++MYA+ ++ +EA V D++P
Sbjct: 176 SVHCLVIKTGYDVDVFVGSSLVDMYAKCGDI----------------KEA--RNVFDEMP 217
Query: 187 ERN 189
RN
Sbjct: 218 HRN 220
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
KQ+H FKT S F+ S L+ +Y+ L+ + + D + P + W +++ C
Sbjct: 275 GKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFD--EVPIKNLGMWNAMLIAC 332
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+ E+ F +M +G+ P+ F VL +C+
Sbjct: 333 AQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACS 368
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LK ++ + +QLHAQ + S ++ + LL +Y V + + D +
Sbjct: 128 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 187
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VAW +++ ++ G++ E+L F M GV PD SV+ +C G
Sbjct: 188 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG 247
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VHA I R G+ +DL + AL++MYA+
Sbjct: 248 KWVHAYIDRKGITVDLELSTALIDMYAK 275
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LK ++ + +QLHAQ + S ++ + LL +Y V + + D +
Sbjct: 177 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 236
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VAW +++ ++ G++ E+L F M GV PD SV+ +C G
Sbjct: 237 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG 296
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VHA I R G+ +DL + AL++MYA+
Sbjct: 297 KWVHAYIDRKGITVDLELSTALIDMYAK 324
>gi|218195019|gb|EEC77446.1| hypothetical protein OsI_16252 [Oryza sativa Indica Group]
Length = 300
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 18 KTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
+ S+ +QLHA T + ++ FL ++LLF+Y + D+ L D + PA V +
Sbjct: 69 RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGM--PARTVFS 126
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W ++I C +G E++ + M S G PD SVLK+C D R G VH
Sbjct: 127 WNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVH 186
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ G+D NAL+ MYA+ +D
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLD 215
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 34 LEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90
L PN+ + S+LL + +F+ + ++ + +T+ P + W + R + V +
Sbjct: 1 LFPNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLI-WNIMFRGHALSSDPVSA 59
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
L +V MI G+ P+ FP +LKSC F+ G+ +H +++LG DLDLY + +L++M
Sbjct: 60 LKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISM 119
Query: 151 YAQSQNMD--MHIYDR------------FQGFGFNGGREASVHEVLDKIPERN 189
YAQ+ ++ ++DR G+ G E S ++ D+IP ++
Sbjct: 120 YAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIE-SAQKMFDEIPIKD 171
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G ++L F M+ + V PD + +V+ +C G VH+
Sbjct: 173 VSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSW 232
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y++
Sbjct: 233 INDHGFGSNLKIVNALIDLYSK 254
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ I ++ +++ L+ +Y+ V + LL+ L ++W ++I T
Sbjct: 226 GRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN-KDVISWNTLIGGYT 284
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR--LGVDLD 140
L E+L F M+ SG P+ S+L +C L G +H I + GV
Sbjct: 285 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGV--- 341
Query: 141 LYTN-----NALMNMYAQSQNMD 158
+ TN +L++MYA+ ++D
Sbjct: 342 VVTNASSLRTSLIDMYAKCGDID 364
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T+ ++L++N ++ ++AK++HAQ+ + FL + L+ +Y V D+ +
Sbjct: 80 TNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQV 139
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LK P V +W S+I C Q G ++ F M +G P + S+L +C
Sbjct: 140 F--LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPA 197
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +G+ +H+ II G D N+L+NMY + +++
Sbjct: 198 ELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL + S K +H I ++ ++ L + L+ +Y + ++ + +
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W S+I Q+G + F+ M G+ PD F SVL C G
Sbjct: 548 RAR-DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG 606
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+H II G+ LD+ NAL+NMY
Sbjct: 607 RQIHMLIIESGLQLDVNLGNALINMY 632
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK +S + K++ A I + + + L+ Y+ + D+ + D
Sbjct: 690 TFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFD-- 747
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P + +W +I QNGL +L +M GV + F S+L +C+
Sbjct: 748 KMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEE 807
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
G+ VHA I++ + D+ AL++MYA+ +++ ++D F
Sbjct: 808 GKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF 850
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II + E++ + +M GV P F +L +CT + G+ +H
Sbjct: 452 ISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
I+R G+ + + NALMNMY + ++ M + F+G
Sbjct: 512 ILRSGIKSNGHLANALMNMYRRCGSI-MEAQNVFEG 546
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP 71
KNP +++ +Q+H I ++ L + L+ +Y + D+ + +L+
Sbjct: 598 KNPEALEL---GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NV 653
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I G ++ F +M G P + F S+LK+C G+ V A
Sbjct: 654 MSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAH 713
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+ G +LD NAL++ Y++S +M +V DK+P R+
Sbjct: 714 ILNSGYELDTGVGNALISAYSKSGSM------------------TDARKVFDKMPNRD 753
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +++L S + K++HA+I K + + L+ +Y + ++ + D
Sbjct: 791 SFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF 850
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
T V W ++I Q+GL ++L F M G+ PD + F S+L +C
Sbjct: 851 -TEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC 900
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + ++I Q+G E+ + +M GV + + SVL +C+ GE +H+
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSH 410
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I +G D+ N+L++MYA+
Sbjct: 411 ISEVGHSSDVQIGNSLISMYAR 432
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 8/150 (5%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFK---TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
LL+ V + A QLHA + K T N F+IS+L+ +Y + L
Sbjct: 56 TLLQGCVYERALPLALQLHADVIKRGPTFALND-FVISKLVILYAKCGASEPATRLFR-- 112
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+P+P V +W +II T+ G E+L +++M G+ PD+ V P+VLK+C +L RF
Sbjct: 113 DSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRF 172
Query: 125 GESVHACIIR-LGVDLDLYTNNALMNMYAQ 153
G+ VHA +++ +G+ +Y +L++MY +
Sbjct: 173 GKGVHAFVVKTIGLKECVYVATSLVDMYGK 202
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W +++ QNG ++ F M G+ P+ S L CT + + G ++H
Sbjct: 494 ITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGY 553
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
++R + ++ ++M+MYA+ ++D
Sbjct: 554 VMRRDLSQSIHIITSIMDMYAKCGSLD 580
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 2/147 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L N+LK +K K +HA + KT+ ++ + L+ +Y V D+ + D
Sbjct: 156 VLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDE 215
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + V W S++ QNG+ E++ F M GV +C
Sbjct: 216 M-SERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGE 274
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMY 151
G H + G++LD +++MN Y
Sbjct: 275 GRQGHGLAVVGGLELDNVLGSSIMNFY 301
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 23/224 (10%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ ++ + L S+ + +H + + S +I+ ++ +Y + + C+
Sbjct: 528 SMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFK 587
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT---LLV 120
T V + ++I +G E+L F +M G+ PDH SVL +C+ L+
Sbjct: 588 MCSTKELYV-YNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMK 646
Query: 121 D----FRF---------GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR-FQ 166
+ F++ E + C+++L + D + AL + + D HI
Sbjct: 647 EGIKVFKYMVSELQMKPSEEHYGCLVKLLAN-DGQLDEALRTILTMPSHPDAHILGSLLT 705
Query: 167 GFGFNGGREAS--VHEVLDKI-PERNGN-VELSSGLAGCNKFEK 206
G N E + + + L K+ P+ +GN V LS+ A K++K
Sbjct: 706 ACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDK 749
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 37 NSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
N+ + +S+LL + +F+ + ++ + +T++ P + W ++ R N V +L
Sbjct: 2 NTNYALSQLLEFCVLSPHFDGLPYAISVFETIEEPNLLI-WNTMFRGHALNSDSVSALKL 60
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+V MI G+ P+ FP +LKSC FR G+ +H +++LG DLD+Y + +L++MYAQ
Sbjct: 61 YVCMISLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQ 120
Query: 154 SQNM-DMH-IYDR 164
+ + D H ++DR
Sbjct: 121 NGRLEDAHKVFDR 133
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + E+L + M+ + V PD + +V+ +C + G VH+
Sbjct: 171 VSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSL 230
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NALM+MY++ M+
Sbjct: 231 IEDHGFGSNLKVVNALMDMYSKCGEME 257
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I T L E+L F M+ SG P+ SVL +C L G +H
Sbjct: 271 AISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHV 330
Query: 131 CIIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 331 YIDKRLKGVTNSSSLRTSLIDMYAKCGDIE 360
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 27/208 (12%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-----NNFNLVHDSLCLLDTLKTPAPPVA 73
T+ +A QLHA KT N + SRLL +Y NN H L D ++ P V+
Sbjct: 27 TEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHS---LFDWIQEPTL-VS 82
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +I+C +N +++ F +++ V PD P VLK C L + G+ +H ++
Sbjct: 83 WNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVL 141
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGGREASVH 179
++G +D + ++L++MY++ +++ ++DR + G+ G E ++
Sbjct: 142 KIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELAL- 200
Query: 180 EVLDKIPERN--GNVELSSGLAGCNKFE 205
E+ +++PE++ L GL+ K E
Sbjct: 201 EMFEEMPEKDSFSWTILIDGLSKSGKLE 228
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + KT +L +RL+ Y + + D+ + D + V+W ++I
Sbjct: 76 EGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVM-PERNVVSWTAMISAY 134
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q G ++L+ FV+M+ SG P+ F +VL SC F G +H+ II+L + +
Sbjct: 135 SQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHV 194
Query: 142 YTNNALMNMYAQ 153
Y ++L++MYA+
Sbjct: 195 YVGSSLLDMYAK 206
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ I K ++ S LL +Y +H++ + L V+ +II
Sbjct: 178 GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCL-PERDVVSCTAIISGYA 236
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F R+ G+ ++ + SVL + + L G+ VH ++R V +
Sbjct: 237 QLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVV 296
Query: 143 TNNALMNMYAQSQNM 157
N+L++MY++ N+
Sbjct: 297 LQNSLIDMYSKCGNL 311
>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 822
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSL 59
M + T LK + + AK +H QI KT E + R + LL +Y + D+
Sbjct: 244 MPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG-LLQLYTQLGDMSDAF 302
Query: 60 CLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ + + K P W +I QNG +++ F+RM V P+ S+L C +
Sbjct: 303 KVFNEMPKNDVVP--WSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAI 360
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
GE +H ++++G DLD+Y +NAL+++YA+ + MD +
Sbjct: 361 GKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAV 403
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+ LK VS+ LH+ I K ++ F+ + L+ Y+ V + + + +
Sbjct: 151 SFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCK 210
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W I+ C +NG +SL RM G P++ F + LK+ L F F +SV
Sbjct: 211 -DIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSV 269
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
H I++ +LD L+ +Y Q +M D F+ F
Sbjct: 270 HGQILKTCYELDPRVGVGLLQLYTQLGDMS----DAFKVF 305
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 24 KQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+ HA+IF L+ +SR L ++ +Y +FN + + + + + P + W +IR
Sbjct: 737 KKTHAKIFAYGLQYDSRIL-TKFAIMYVSFNRIDAASIVFEDIPNPCSFL-WNVMIRGFA 794
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+G + SL + +M+ G+ PD FP LKSC L D + G+ +H ++ G DL+
Sbjct: 795 TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854
Query: 143 TNNALMNMYAQSQNMD 158
+ AL++MYA+ +++
Sbjct: 855 VDAALVDMYAKCGDIE 870
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 17/208 (8%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
LK+ + + K +H + N F+ + L+ +Y + + + D +
Sbjct: 825 LKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV-RD 883
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W S+I NG E+L F M SGV P+ SVL +C L R GE H+
Sbjct: 884 LVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHS 943
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQG------------FGFNG-GRE 175
+I+ G + D+ A+M+MY++ ++D+ ++D G +G +G GR+
Sbjct: 944 YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003
Query: 176 A-SVHEVLDKIPERNGNVELSSGLAGCN 202
A + + + K R +V + L+ C+
Sbjct: 1004 AIDLFDQMVKAGVRPSHVTFTCVLSACS 1031
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S + L++L + + QLH+Q+FKT + F ++L +Y + +
Sbjct: 1 MRSRQVLVDLFQ---ACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARK 57
Query: 61 LLDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTL 118
+ D +TP P V W S +R + E+L F MI +G PD+ P LK+C
Sbjct: 58 VFD--ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAG 115
Query: 119 LVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
L G+ +H + + D++ +AL+ +Y++ M + +++ FQ
Sbjct: 116 LRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ 166
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LK ++ K +H K E S F+ S L+ +Y+ + ++L + + + P
Sbjct: 110 LKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRP- 168
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W S++ QN E+L F +M+ V D SV+ +C L++ + G V
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCV 228
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
H +IR D DL N+L+N+YA++
Sbjct: 229 HGLVIRREFDGDLPLVNSLLNLYAKT 254
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I C N E+L F MI P+ S L++C + + G+ +H
Sbjct: 273 ISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKI 332
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+ G +LD + AL++MY + D + D FQ
Sbjct: 333 AVWKGFELDFSVSTALIDMYMKCSCPDEAV-DLFQ 366
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 52/228 (22%)
Query: 26 LHAQIFKTLEPNSRFLISRL-----------------LFIYNNFNLVHD-SLCLLDTLKT 67
H I K EPNS ++S L + ++ F L S L+D
Sbjct: 295 FHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMK 354
Query: 68 PAPP---------------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
+ P V+W +++ QNG+ +S+ F M+ G+ PD +
Sbjct: 355 CSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 414
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-------------DM 159
L + + L F+ +H ++R G + +++ +L+ +Y++ ++ D+
Sbjct: 415 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV 474
Query: 160 HIYDRF-QGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCN 202
I+ +G + GR E+ D++ + R NV S L+ C+
Sbjct: 475 VIWSSMIAAYGIH-GRGGEALEIFDQMVKNSTVRPNNVTFLSILSACS 521
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++ K++HA I K S FL++++L + +N + V + + L+ P ++ +IIR
Sbjct: 21 AELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNV-FSYNAIIRT 79
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
T N ++T F +M+ + PD FP V+KSC L+ R G+ VHA + + G
Sbjct: 80 YTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKT 139
Query: 140 DLYTNNALMNMYAQSQNMD--MHIYDRF---QGFGFNG--------GREASVHEVLDKIP 186
T NAL++MY + +M +Y+ +N G+ S EV D++P
Sbjct: 140 HAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMP 199
Query: 187 ER 188
R
Sbjct: 200 CR 201
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G ++L F M G+ PD SVL +C L G+ +H
Sbjct: 204 VSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKY 263
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G + NAL+ MYA+ +D
Sbjct: 264 SEKSGFLKNAGVFNALVEMYAKCGCID 290
>gi|224079788|ref|XP_002305943.1| predicted protein [Populus trichocarpa]
gi|222848907|gb|EEE86454.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ ++ S K +H + K +++ L S L+ +Y+ + + ++ C L +
Sbjct: 43 TFSSVLRACSALGEFSDGKCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEA-CRLFSC 101
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I Q G ++L ++ MI +GVYP+ F VL + L + G
Sbjct: 102 VENGDVVSWTTMISSLVQAGKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFL-GLKHG 160
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I GV+L+L AL++MY++ Q MD
Sbjct: 161 KVVHAHLIVFGVELNLVVKTALVHMYSKCQRMD 193
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W I+ ++ E+L F M+GSG P+ F SVL++C+ L +F G+ +H C
Sbjct: 7 VSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDGKCIHGC 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+I+ G + + + L+++Y++ +++
Sbjct: 67 VIKHGFESNQILGSVLIDLYSKYGSIE 93
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +I+ QN L E++ F M SG+ ++ + S+L +C+L++ G +HA +I
Sbjct: 210 WTAILSGLAQNLKLREAVVAFQEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARVI 269
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
G++ D+ NAL++MY +
Sbjct: 270 MAGLEDDIPVGNALVDMYMK 289
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
V D L + + +++P ++W S+I +++G S ++ M SG+ P+ +L+
Sbjct: 294 VEDGLRVFEGIESP-DVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILR 352
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
SC +H +I+ D D+ +NAL++ YA ++ +D
Sbjct: 353 SCRAAKSASQLLKLHGHVIKTNADHDIAVSNALVDAYAGNERVD 396
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 20/209 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++ L + + QLH+ K+ +S + + L+ Y L D+ +
Sbjct: 447 SMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGLTRDAERAFAEI 506
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V+W +I G + +L+ F M +GV PD F VL +CT
Sbjct: 507 REP-DIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPDSVTFLLVLFTCT-------- 557
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
H + VD+ L N++ M+ +D H F G GR E+L+ +
Sbjct: 558 ---HCGL----VDMGLEYFNSMKEMHGIEPQLD-HYVCLFDLLG-RAGRLEEAMEILETM 608
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHD 214
P R + LA C R+V G D
Sbjct: 609 PIRPNASIYKTLLAACKV--HRIVPLGED 635
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + KQ+HA+I K + +R ++ ++L+ Y + + + L L+
Sbjct: 55 EILQGCVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLR 114
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL+ +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 115 VR-NVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 173
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH +++ G ++ ++L +MY + +D +V D+IP
Sbjct: 174 GVHGYVVKAGFHDCVFVASSLADMYGKCGVLD------------------EARKVFDEIP 215
Query: 187 ERN 189
ERN
Sbjct: 216 ERN 218
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ ++ + D +
Sbjct: 158 NVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEI-PE 216
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ F M GV P + L + + G+
Sbjct: 217 RNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQS 276
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA + G++LD +++N Y +
Sbjct: 277 HAIAVVNGLELDNILGTSILNFYCK 301
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QNG E++ +M SG+ P+ L +C L +G S+H
Sbjct: 492 VSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGY 551
Query: 132 IIRLGVDL-DLYTNNALMNMYAQSQNMD 158
IIR + +L++MYA+ +++
Sbjct: 552 IIRNQRHCSSVSIETSLVDMYAKCGDIN 579
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + KQ+HA+I K + +R ++ ++L+ Y+ + + L L+
Sbjct: 69 EILQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAEVLFSKLR 128
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M G++PD+ V P+V K+C L RFG
Sbjct: 129 VR-NVYSWAAIIGLKCRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRFGR 187
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH +++ G D ++ ++L +MY + +D +V D+IP
Sbjct: 188 GVHGYVVKSGXDDCVFVASSLADMYGKCGVLD------------------DARKVFDEIP 229
Query: 187 ERN 189
ERN
Sbjct: 230 ERN 232
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K+ + F+ S L +Y ++ D+ + D +
Sbjct: 172 NVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIP-E 230
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ F M G+ P + L + + G+
Sbjct: 231 RNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGKQS 290
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
HA I G++LD +++N Y + ++ I+DR
Sbjct: 291 HAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDR 328
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QNG E++ +M SG+ P+ L +C L G S+H
Sbjct: 506 VSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGY 565
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR + +L++MYA+ +++
Sbjct: 566 IIRNQHHSSSVSIETSLVDMYAKCGDLN 593
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +NL+ ++++ K++H I K+ L + +L +Y + D+ DT+
Sbjct: 82 TYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM 141
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V+W +I +QNG +++ +++M+ SG +PD F S++K+C + D G
Sbjct: 142 QLRSV-VSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLG 200
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H +I+ G D L NAL++MY +
Sbjct: 201 GQLHGHVIKSGYDHHLIAQNALISMYTK 228
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T +NLL S T +Q Q+H+ I K + + LL +Y + +HD+
Sbjct: 380 MPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFN 439
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + V+W +I+ C+Q+ E+ F M+ S PD+ ++L +C LV
Sbjct: 440 VFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELV 499
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH ++ G+ +D+ +N L++MYA+
Sbjct: 500 SLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAK 532
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
QLH + K+ + + L+ +Y F + H S T+ + ++W S+I TQ
Sbjct: 202 QLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVF--TMISTKDLISWASMITGFTQ 259
Query: 84 NGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G +E+L F M GVY P+ +F SV +C L+ FG + + G+ +++
Sbjct: 260 LGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVF 319
Query: 143 TNNALMNMYAQ 153
+L +MYA+
Sbjct: 320 AGCSLCDMYAK 330
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II N + E++ F +MI G+ PD F ++L +C + G +H+
Sbjct: 350 VSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSY 408
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
II++G+D N+L+ MY + N+ +D F F
Sbjct: 409 IIKMGLDKVAAVCNSLLTMYTKCSNL----HDAFNVF 441
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 23/179 (12%)
Query: 24 KQLHAQIF--KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K+LH++I + L PN I +L+ Y + + D + T V + +IR
Sbjct: 55 KKLHSKILIDQNLHPNPSLGI-KLMRAYAACGEPCYTRHIFDEI-TDKNVVFFNVMIRSY 112
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NGL ++L F M G YPD+ +P VLK+C++ + G +H +++LG+D++L
Sbjct: 113 VNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNL 172
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
Y N L++MY + + +D + VLD++P R+ V +S +AG
Sbjct: 173 YIGNGLVSMYGKCKWLD------------------AARRVLDEMPGRD-MVSWNSMVAG 212
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I N + E++ +++M GV PD SVL +C L G +H
Sbjct: 272 ISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ R + +L NAL++MYA+
Sbjct: 332 VERKKLRPNLLLENALIDMYAK 353
>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 663
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPV 72
+ + K A Q+F +E S F + +++ Y+ +H+ +DT + V
Sbjct: 35 IDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSK---LHEMGRAIDTFRQMPERDSV 91
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +II + +GL ++SL FV M G P+ + SVL +C + DF++G+ +HA I
Sbjct: 92 SWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARI 151
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+R+ LD+ N L++MYA+ +D
Sbjct: 152 VRVEPFLDVLVGNGLVDMYAKCGLID 177
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLL 62
+ T ++L +I K LHA+I + +EP L+ L+ +Y L+ S +
Sbjct: 125 SMTYASVLSACANIYDFQWGKHLHARIVR-VEPFLDVLVGNGLVDMYAKCGLIDASKRVF 183
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+TL+ V W S+I G E F +M V D+ + ++L C +
Sbjct: 184 NTLR-EHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNI 242
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYD------RFQGF 168
GE +H ++ G++ + NA ++MYA+ + + M +D F
Sbjct: 243 SIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSF 302
Query: 169 GFNGGREASVHEVLDKIPERN 189
+G E + + +++PERN
Sbjct: 303 SHSGNVERA-RDYFNRMPERN 322
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QN E L ++ M+ V PD F +++ +C+ L + G + +
Sbjct: 324 ISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQ 383
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+++G+ D+ N+ + +Y++ GR + D I E+N
Sbjct: 384 AVKVGLGSDVSVVNSAITLYSRC------------------GRIEEAQNLFDSIQEKN 423
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-TLK 66
NLL+ T SQ KQ+HA + P S L + L+ Y +F +SL L ++
Sbjct: 39 NLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVA 98
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
W ++IR + G+ + + M+ +GV PD +P VLK C+ V+ R G
Sbjct: 99 YSRSAFLWNTLIRANSIAGVF-DGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGR 157
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH +LG D D++ N L+ Y N G +V D++P
Sbjct: 158 EVHGVAFKLGFDGDVFVGNTLLAFYG------------------NCGLFGDAMKVFDEMP 199
Query: 187 ERN 189
ER+
Sbjct: 200 ERD 202
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +N L E++ +M G P++ F +VL +C L G+ +HA
Sbjct: 409 VSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHAR 468
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IIR+G LDL+ +NAL +MY++
Sbjct: 469 IIRVGSSLDLFVSNALTDMYSK 490
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++H FK F+ + LL Y N L D++ + D + V+W ++I C
Sbjct: 155 KGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMP-ERDKVSWNTVIGLC 213
Query: 82 TQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VD 138
+ +G E+L F M+ + G+ PD SVL C D VH +++G +
Sbjct: 214 SLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLG 273
Query: 139 LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ NAL+++Y + G E + +V D+I ERN
Sbjct: 274 GHVKVGNALVDVYGKC------------------GSEKASKKVFDEIDERN 306
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II + G +++L F MI G+ P+ S+L L F+ G VH
Sbjct: 308 ISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGF 367
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+++ ++ D++ +N+L++MYA+S
Sbjct: 368 SLKMAIESDVFISNSLIDMYAKS 390
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN---FNLVHDSLCLL 62
T N+L + + K++HA+I + F+ + L +Y+ NL + +
Sbjct: 445 TFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNI- 503
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V++ +I ++ +ESL F M G+ PD F V+ +C L
Sbjct: 504 ----SVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFI 559
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
R G+ +H ++R L+ N+L+++Y + +D+
Sbjct: 560 RQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDL 596
>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Brachypodium distachyon]
Length = 757
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HAQ K+ + + + L+ +Y+ LV D L ++ P++W SII
Sbjct: 161 GRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREK-DPISWGSIIAGFA 219
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F M+ G++ P+ F SV +C +L +GE +H+ ++ +D +
Sbjct: 220 QQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNS 279
Query: 142 YTNNALMNMYAQSQNMD 158
Y +L +MYA+ + ++
Sbjct: 280 YAGCSLSDMYARCKKLE 296
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII C+ GLL E++ M GSG+ PD +L +C + G +H+
Sbjct: 311 VSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSY 370
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++LG+D D+ N+L++MYA+
Sbjct: 371 LVKLGLDGDVSVCNSLLSMYAR 392
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 26 LHAQIFKTLEPN---SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCC 81
+H + + +PN + L + L+ +Y + + D + PA PV+W S+I
Sbjct: 60 VHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEM--PAKNPVSWASVIAAH 117
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN ++L F M+ SG PD S +++C L D G VHA ++ DL
Sbjct: 118 AQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDL 177
Query: 142 YTNNALMNMYAQS 154
NAL+ MY++S
Sbjct: 178 IVQNALVTMYSKS 190
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + KQ+H FK N L + L+ Y + D++ L + +
Sbjct: 448 SLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMM 507
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T + +W S+I Q+G ++L F RM GV P+H F VL +C+
Sbjct: 508 GTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACS 559
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
++++ + + + K +HAQI F+ + LL +Y + DS + + + T
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM-TEH 285
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I CT NGL +E+ FVRM P+ SV K+ LVD G+ V
Sbjct: 286 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 345
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C LG++ ++ AL++MY++
Sbjct: 346 NCASELGIEGNVLVGTALIDMYSK 369
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSL 59
T + LI++L++ + +AK +H + K+ + + L + +Y+ + +
Sbjct: 116 TQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAAC 175
Query: 60 CLLDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ D + P V +W +I T++GL + F M+ SG+ PD + ++++SC
Sbjct: 176 GVFDEM--PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 233
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
L G+ VHA I+ G ++ + +L+NMYA+
Sbjct: 234 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAK 268
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ +Q+ L E+L F M G P+ F SVL SC L +G VH
Sbjct: 493 VSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGL 552
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G+D + +AL++MYA+
Sbjct: 553 LCKAGLDTEKCIESALIDMYAK 574
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDT------LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
+ L+ +Y+ +HD+ + DT + TP W ++I +Q+G E+L +V+
Sbjct: 361 TALIDMYSKCGSLHDARSVFDTNFINCGVNTP-----WNAMISGYSQSGCSQEALELYVQ 415
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT-NNALMNMYAQSQ 155
M +G+ D + SV + +FG VH +++ G+DL + + NNA+ + Y++
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 475
Query: 156 NMD--MHIYDRFQ 166
++ ++DR +
Sbjct: 476 FLEDVRKVFDRME 488
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
I LKN I +Q K++HA + K S FL++++L +N V + L L
Sbjct: 14 ITSLKNCFKI---TQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLH 70
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG---SGVYPDHNVFPSVLKSCTLLVDFRF 124
P + +IIR N +++ FV+M+ + V+PD FP V+KSCT ++ R
Sbjct: 71 PNI-FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH + + G D T NAL++MY +
Sbjct: 130 GMQVHGLVYKFGADFHCITENALIDMYTK 158
>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g25270, chloroplastic; Flags: Precursor
gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T + +LL+ S++ ++H I L N+ + S+L+ +Y + +
Sbjct: 89 LTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHE 148
Query: 61 LLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + K + P AW S+I + G +++ + +M GV PD FP VLK+C +
Sbjct: 149 VFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGI 208
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ GE++H +++ G D+Y NAL+ MYA+
Sbjct: 209 GSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAK 242
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ +GLL E+L F M+ +G+ PD SVL ++ F+ G +H
Sbjct: 262 VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLAR---VLSFKHGRQLHGW 318
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR G++ +L NAL+ +Y++
Sbjct: 319 VIRRGMEWELSVANALIVLYSK 340
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ + ++ AK++H + K+ S L + ++ +Y + D+ + DT+
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V+W S+I +QNG +++ +++M SG +PD F SV+K+C + D G
Sbjct: 221 QLP-NVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+HA +I+ L + NAL++MY
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALISMY 305
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I+LL S +Q +Q+H+ I K + + LL +Y + +HD+L + +
Sbjct: 465 TYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDI 524
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
A V+W +I+ C Q E+ + M SG PD ++L +C L G
Sbjct: 525 SRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVG 584
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRF 165
VH I+ G+ LD+ N L++MYA+ ++ H D F
Sbjct: 585 NQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLK-HARDVF 623
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLHA + K+ + + L+ +Y NF + + + + T ++W ++I
Sbjct: 279 GRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTK-DLISWGTMITGYI 337
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G VE+L F ++ G Y P+ +F SV +C+ L++ +G+ VH ++ G+ ++
Sbjct: 338 QLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNV 397
Query: 142 YTNNALMNMYAQ 153
+ +L +MYA+
Sbjct: 398 FAGCSLCDMYAK 409
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H K + F L +Y F + + +K P V+W +II
Sbjct: 381 GKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNP-DIVSWNAIIAAFA 439
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E++ F +MI G+ PD + S+L +C V G +H+ I+++G D ++
Sbjct: 440 DNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEIT 499
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGF 168
N+L+ MY + H++D F
Sbjct: 500 VCNSLLTMYTKCS----HLHDALNVF 521
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Query: 9 NLLKNPVSIKTKSQAKQLHA-----QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+LL+ + K SQ K +H I K + + R +I +L+ +Y N + L D
Sbjct: 15 HLLEPCIQSKWLSQGKLIHQNLLKHHIAKNNDTHFRLVIEKLMHLYLVCNEDQYARHLFD 74
Query: 64 TLKTPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
K+P P V W +IR NG E++ + +M+ G+ P +P VLK+C+ L
Sbjct: 75 --KSPQRPRKVVIWNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQ 132
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H RL +D D+Y + A+++MYA+ +D
Sbjct: 133 AIEEGKEIHIHAKRLDLDSDVYVSTAVVDMYAKCGCLD 170
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L+ + S+ + +H K+ + L + LL Y V D++ +
Sbjct: 328 TLATVLRACAELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEM 387
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V++ +II C QNG E+L+ F RM SG+ P+ +L +C L + G
Sbjct: 388 ELK-DEVSYSAIISGCMQNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHG 446
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ 166
H+ + G ++ NAL++MYA+ +D +++DR
Sbjct: 447 SCCHSYALIKGFTSEITICNALIDMYAKCGRIDTARNVFDRMH 489
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 4/154 (2%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ T++ +L S K LH + + + + LL +Y + + D
Sbjct: 220 SSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFFD 279
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI----GSGVYPDHNVFPSVLKSCTLL 119
+ V W +++ L+ E+L F M+ + P +VL++C L
Sbjct: 280 MMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAEL 339
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D G +H I+ G DL N L++ YA+
Sbjct: 340 TDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAK 373
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ + K +H+Q+ + + + ++ +Y + D+ + + + P V+W +
Sbjct: 217 VESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHP-NTVSWNA 275
Query: 77 IIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
I+ CTQ+G VE+L F RM + G PD F ++L +C+ FGE ++ CI++
Sbjct: 276 IVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQC 335
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G D L N +M MY+ +D
Sbjct: 336 GYDTHLIVGNCIMTMYSSCGRID 358
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L + S+ K LH + + + + + L+ +Y V D+ + D L
Sbjct: 105 TFVTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I Q+ VE+L F RM SGV P+ + + + +C + G
Sbjct: 165 ALQ-DVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADG 223
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H+ ++ G + D+ + A++NMY + +++ EV +++
Sbjct: 224 KLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLE------------------DAREVFERM 265
Query: 186 PERNGNVELSSGLAGCNK 203
P N V ++ +A C +
Sbjct: 266 PHPN-TVSWNAIVAACTQ 282
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 46 LFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
+ +Y V D++ + +L P+ V+W S++ ++G ++ F RM G+ PD
Sbjct: 44 IHMYGKCGCVEDAVTVFQSLDHPSQ-VSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPD 102
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F +VL CT D G+ +H ++ G++ ++ +L+ MY +
Sbjct: 103 RITFVTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGK 150
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
FL+S L+ +++ + V ++ L D +K V W SII Q+G ++L C M
Sbjct: 440 FLVSALINMHSRYGNVREARSLFDDMKDR-DIVMWTSIISSYVQHGSSDDALGCTRLMRL 498
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ + + L +C L G+ +H+ I G NAL+NMYA+
Sbjct: 499 EGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAK 552
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
++ +Y++ + ++ T+ ++W +II Q G E++ F RM+ G+ P
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTM-VERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITP 405
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
D F S++ + + + + ++ GV+LD++ +AL+NM+++ N+
Sbjct: 406 DKFTFISIIDGTARMQEAKI---LSELMVESGVELDVFLVSALINMHSRYGNV 455
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ L S+ S+ K +H+ + S + + L+ +Y + ++ +
Sbjct: 507 TLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFH-- 564
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +I Q E+L F M G+ D F +VL C+ + G
Sbjct: 565 QCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASE---G 621
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+H ++ G++ D + AL+NMY S+++D I+ R +
Sbjct: 622 SKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRME 664
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ S+ ++H + +T + + + LL +Y + ++ + ++ V+W ++I
Sbjct: 617 SASEGSKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFR-DIVSWNAMI 675
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK--SCTLLVDFRFGESVHACIIRLG 136
++GL E++ F RM GV PD F +VL S + + V I G
Sbjct: 676 AGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQG 735
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+ D NA+++M+ +S GR A ++I ER+
Sbjct: 736 YETDTIVGNAIVSMFGRS------------------GRLAEARRAFERIRERDA 771
>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Glycine max]
Length = 715
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCL 61
S+ T +LL+ ++ LHA+ FK L N L + LL +Y+N +L L
Sbjct: 115 SSTTFTSLLQASSLLEHWWFGSSLHAKGFK-LGLNDICLQTSLLNMYSNCGDLSSAELVF 173
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + VAW S+I +N + E + F++M+ G P + VL SC+ L D
Sbjct: 174 WDMVDRD--HVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKD 231
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+R G +HA +I V LDL+ NAL++MY + NM I+ R +
Sbjct: 232 YRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRME 278
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ S K LHA++ KT S F+ S L+ +Y N D+ + + V W +I
Sbjct: 333 SSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFK-NHESDAAWRVFCSISVKDVVLWTEMI 391
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
++ + ++ CF +M+ G D V V+ +C L R GE +H ++LG D
Sbjct: 392 TGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYD 451
Query: 139 LDLYTNNALMNMYAQSQNMD 158
+++ + +L++MYA++ +++
Sbjct: 452 VEMSVSGSLIDMYAKNGSLE 471
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
++LL+ ++ + +A+QLHA I T S F+ + +L +Y + DS + D
Sbjct: 14 LSLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFD- 72
Query: 65 LKTPAPP-VAWKSIIRCCTQNG--LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
K P V++ +++ ++ + +L + +M+ +G+ P F S+L++ +LL
Sbjct: 73 -KMPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEH 131
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
+ FG S+HA +LG++ D+ +L+NMY+
Sbjct: 132 WWFGSSLHAKGFKLGLN-DICLQTSLLNMYS 161
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
AK LHA + + S F+ +RL+ +Y N V S C D + P V AW S+I
Sbjct: 35 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQI--PQKDVYAWNSMISAY 92
Query: 82 TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
NG E++ CF +++ S + PD FP VLK+C LVD G +H +LG +
Sbjct: 93 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWN 149
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +L++MY++ FGF G + D +P R+
Sbjct: 150 VFVAASLIHMYSR--------------FGFTG----IARSLFDDMPFRD 180
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 4/189 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++H ++ KT F+ + L+ +Y + D++ L +
Sbjct: 289 TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 348
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +II C +G ++L F M+ GV PDH F S+L +C+ G
Sbjct: 349 PQESS-VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG 407
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ + G+ L ++++ ++ ++M YD + +AS+ L
Sbjct: 408 KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEM-AYDFIKDMPLQ--PDASIWGALLGA 464
Query: 186 PERNGNVEL 194
+GN+EL
Sbjct: 465 CRIHGNIEL 473
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I QNGL E++ + M + P+ + S+L + + + G +H
Sbjct: 252 ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG 311
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ + LD++ L+++Y +
Sbjct: 312 RVIKTNLHLDVFVATCLIDVYGK 334
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 23/167 (13%)
Query: 36 PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTC 93
PN S F + +++ Y+ + V +L L K P V+W ++I +Q+G E+L
Sbjct: 176 PNPSLFCWNSMIYGYSKYGSVKKALELF--AKMPERDTVSWNTMISILSQHGFGAETLNT 233
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F+ M G P+ + SVL +CT + D +G +HA I+R+ LD+Y L++MYA+
Sbjct: 234 FLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK 293
Query: 154 SQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
GR S +V D + E N V +S + G
Sbjct: 294 C------------------GRLESARQVFDGLTEHNA-VSWTSLIGG 321
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLL 62
+ T ++L SI LHA+I + +EP + L+ +Y + + +
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARIVR-MEPCLDVYAGCGLIDMYAKCGRLESARQVF 304
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L T V+W S+I Q G E+L F +M V D +VL C D
Sbjct: 305 DGL-TEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDI 363
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQGFGF---- 170
GE +HA I G+D + NAL+ MYA+ ++ M I D
Sbjct: 364 SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 423
Query: 171 -NGGREASVHEVLDKIPERN 189
G E DK+PERN
Sbjct: 424 SQAGDVEKAREYFDKMPERN 443
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S++ Q G E L +++M+ GV D F + + +C L G + A
Sbjct: 445 ISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQ 504
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+LG ++ N+++ MY++
Sbjct: 505 AEKLGFSSNVSVANSVVTMYSR 526
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 90/212 (42%), Gaps = 25/212 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M ++ +K S+++ A++LHAQ+ +S FL + LL +Y+N L+ D+
Sbjct: 1 MEMSQKFYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYR 60
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM----------IGSGVYPDHNVFP 110
+ + P +W ++I +G + E+ F +M + SG Y +
Sbjct: 61 VFGGIMFP-NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSG-YFHNGELE 118
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR---- 164
+ +K+ L + +H + +D ++++MY + MD ++ R
Sbjct: 119 ATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNP 178
Query: 165 ----FQGFGFNGGREASVHEVLD---KIPERN 189
+ + + SV + L+ K+PER+
Sbjct: 179 SLFCWNSMIYGYSKYGSVKKALELFAKMPERD 210
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T + + +LK + K AKQ+H I K+ + +++ LL +Y + ++ C
Sbjct: 25 ITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARC 84
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D L +W ++I ++ +++ F M GV P+ + +LK+C L
Sbjct: 85 VFDAL-VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLS 143
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYD 163
++G+ VHACI G++ D+ AL+ MY + S N I+D
Sbjct: 144 ALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI-FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T + +LK S+ K++HA I LE + R + + LL +Y ++++ + D
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVR-VGTALLRMYGKCGSINEARRIFDN 189
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L ++W +I Q+G E+ ++M G P+ + S+L +C ++
Sbjct: 190 LMNH-DIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKW 248
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+ VH + G++LD+ AL+ MYA+S ++D ++DR +
Sbjct: 249 VKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T +++L S K++H LE + R + + L+ +Y + D+ + D
Sbjct: 232 TYVSILNACASEGALKWVKRVHRHALDAGLELDVR-VGTALVQMYAKSGSIDDARVVFDR 290
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K V+W +I ++G E+ F++M G PD +F S+L +C +
Sbjct: 291 MKVR-DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEW 349
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+ +H + G+++D+ AL++MY++S ++D ++DR +
Sbjct: 350 VKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMK 393
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++L S K++H + LE + R + + L+ +Y+ + D+ + D +
Sbjct: 334 FLSILNACASAGALEWVKKIHRHALDSGLEVDVR-VGTALVHMYSKSGSIDDARVVFDRM 392
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I Q+GL ++L F RM GV PD F +VL +C+ G
Sbjct: 393 KVR-NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEG 451
Query: 126 ESVHACIIRL-GVDLDLYTNNALMNMYAQS 154
S + + ++ G++ D+ N ++++ ++
Sbjct: 452 RSQYLAMTQVYGIEPDVSHCNCMVDLLGRA 481
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK V ++ + K +H FKT F+ L+ +Y V D+L + + +
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ E++ F RM V P+ S+L++C LVD + G
Sbjct: 308 PKD-DVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLG 366
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H ++++G+D++++ +NALM+MYA+ M+
Sbjct: 367 NQIHCHVVKVGLDMNVFVSNALMDMYAKCGRME 399
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LK VS + +HA ++K + F+ + L+ Y+ + + D ++
Sbjct: 150 TVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYK 209
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++ C +N ESL F RM G P++ F SVLK+C L F G++V
Sbjct: 210 -DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAV 268
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H C + +L+ L+++Y +S ++D
Sbjct: 269 HGCAFKTSYLEELFVGVELIDLYIKSGDVD 298
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL++ + + K LH +I K F + LL Y ++ + D+ L D +
Sbjct: 49 SLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPD- 107
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V++ ++I+ +Q E++ F R+ G G + VF +VLK + G SV
Sbjct: 108 RNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSV 167
Query: 129 HACIIRLGVDLDLYTNNALMNMYA 152
HAC+ +LG D D + AL++ Y+
Sbjct: 168 HACVYKLGFDSDAFVGTALIDCYS 191
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LL+ S+ Q+H + K + F+ + L+ +Y + +SL L
Sbjct: 349 TLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS-- 406
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++P V+W ++I Q G ++L F M+ V + SVL++C +
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +H+ ++ D + NAL++MYA+ N+
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNI 499
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
C + L + + F+ S P+ N ++ S+L+SC D G+ +H II+ G
Sbjct: 16 CKSNTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGN 75
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELS 195
LDL+ NN L+N Y + YD ++ D++P+RN V L
Sbjct: 76 CLDLFANNILLNFYVK--------YDSL----------PDAAKLFDEMPDRNTVSFVTLI 117
Query: 196 SGLAGCNKFEK------RVVSAGHD 214
G + C +F + R+ GH+
Sbjct: 118 QGYSQCLRFSEAIGLFSRLQGEGHE 142
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ I Q+H+ KT+ + + + L+ +Y + D+ + D L
Sbjct: 450 TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDML 509
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I + +GL E+L F M+ + PD F +L +C+
Sbjct: 510 R-EHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACS 560
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ +Y N S+ + D L + W S++ C QNG + E+L F RM+
Sbjct: 209 FVGSSLIDMYANCTRTDYSVKVFDNLPV-RDAILWNSMLAGCAQNGSVDEALGLFRRMLH 267
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
SG+ P F S++ +C L G+ +HA +IR G D +++ +++L++MY + N+ +
Sbjct: 268 SGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSI 327
Query: 160 --HIYDRFQ 166
I+DR Q
Sbjct: 328 ARRIFDRIQ 336
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 62/226 (27%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L LK+ ++ ++ LHA ++ RF + LL +Y
Sbjct: 60 SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLY---------------C 104
Query: 66 KTPAPP----------------------------VAWKSIIRCCTQNGLLVESLTCFVRM 97
K PAPP V+W +++ C ++G E+L M
Sbjct: 105 KLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREM 164
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G PD SVL D R G +H R G D++ ++L++MYA
Sbjct: 165 WRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRT 224
Query: 158 DMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNK 203
D + +V D +P R+ + +S LAGC +
Sbjct: 225 DYSV------------------KVFDNLPVRDA-ILWNSMLAGCAQ 251
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+W IR G ++ F+RM S P LKSC L G S+
Sbjct: 21 SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA--SVHEVLDKIP 186
HA +R G D + NAL+N+Y + H + +G SV +V D++P
Sbjct: 81 HALALRSGAFADRFAANALLNLYCKLPAPPSHSPE------MDGSAVVLESVRKVFDEMP 134
Query: 187 ERN 189
E++
Sbjct: 135 EKD 137
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLHA + + + F+ S L+ +Y V + + D +++P V+W ++I
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSP-DIVSWTAMIMGHA 351
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G E+L F RM + P+H F +VL +C+
Sbjct: 352 LHGPAREALVLFDRMELGNLKPNHITFLAVLTACS 386
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W S+IR T NGL ++L + +M V PD FPSV+ +C L DF G V ++
Sbjct: 1 WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
+G DLY NAL++MYA+
Sbjct: 61 EIGFGFDLYIGNALVDMYAR 80
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDT 64
T + LL + K++H + K L +S ++S L +Y+ V DSL + +
Sbjct: 336 TFVTLLSISTRLADTELGKEIHCDLAK-LGFDSDLVVSNALVDMYSKCGNVKDSLKVFEN 394
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG----SGVYPDHNVFPSVLKSCTLLV 120
+K V W +II C Q E T RMI + PD +L C+L+
Sbjct: 395 MKVR-DIVTWNTIIAACVQ----AEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIA 449
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
R G+ VHAC + G + + NAL+ MY++ N+
Sbjct: 450 AKRQGKEVHACTFKFGFESTVPVGNALIEMYSKCSNL 486
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + NG E+L + + +G+ PD+ SVL +C L+ + GE +H
Sbjct: 100 VSWNSLISGYSANGYWDEALEIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGL 159
Query: 132 IIRLGVDLDLYTNNALMNMY 151
+ +LG+++D+ +N L++MY
Sbjct: 160 VEKLGMNIDVIMSNGLLSMY 179
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y F + D+ + + + V+W ++I Q L ES+ F M+ P
Sbjct: 175 LLSMYFKFGRLMDAQRVFNKM-VVKDYVSWNTLICGYCQMELFEESIQLFREMVKR-FRP 232
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
D SVL++C LL D FG+ VH I+R G++ D+ +N +++ YA+ ++
Sbjct: 233 DLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDL 285
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q+ E + F +M + PD F ++L T L D G+ +H
Sbjct: 301 VSWNTLINGYIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELGKEIHCD 359
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +LG D DL +NAL++MY++ N+
Sbjct: 360 LAKLGFDSDLVVSNALVDMYSKCGNV 385
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L I K Q K++HA FK ++ + + L+ +Y+ + + + + + +
Sbjct: 437 TLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVGNALIEMYSKCSNLKYCIRVFEDM 496
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
KT V W +++ G ++L F M +G+ PDH F +++ +C+
Sbjct: 497 KTK-DVVTWTALVSAYGMYGEGKKALRAFAEMEEAGIIPDHIAFVAIIYACS 547
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
++++ + + + K +HAQI F+ + LL +Y + DS + + + T
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM-TEH 231
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I CT NGL +E+ FVRM P+ SV K+ LVD G+ V
Sbjct: 232 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 291
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C LG++ ++ AL++MY++
Sbjct: 292 NCASELGIEGNVLVGTALIDMYSK 315
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSL 59
T + LI++L++ + +AK +H + K+ + + L + +Y+ + +
Sbjct: 62 TQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAAC 121
Query: 60 CLLDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ D + P V +W +I T++GL + F M+ SG+ PD + ++++SC
Sbjct: 122 GVFDEM--PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 179
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
L G+ VHA I+ G ++ + +L+NMYA+
Sbjct: 180 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAK 214
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ +Q+ L E+L F M G P+ F SVL SC L +G VH
Sbjct: 439 VSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGL 498
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G+D + +AL++MYA+
Sbjct: 499 LCKAGLDTEKCIESALIDMYAK 520
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDT------LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
+ L+ +Y+ +HD+ + DT + TP W ++I +Q+G E+L +V+
Sbjct: 307 TALIDMYSKCGSLHDARSVFDTNFINCGVNTP-----WNAMISGYSQSGCSQEALELYVQ 361
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT-NNALMNMYAQSQ 155
M +G+ D + SV + +FG VH +++ G+DL + + NNA+ + Y++
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421
Query: 156 NMD--MHIYDRFQ 166
++ ++DR +
Sbjct: 422 FLEDVRKVFDRME 434
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
AK LHA + + S F+ +RL+ +Y N V S C D + P V AW S+I
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQI--PQKDVYAWNSMISAY 192
Query: 82 TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
NG E++ CF +++ S + PD FP VLK+C LVD G +H +LG +
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWN 249
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +L++MY++ FGF G + D +P R+
Sbjct: 250 VFVAASLIHMYSR--------------FGFTG----IARSLFDDMPFRD 280
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSI 77
T +++H FK + F+ + L+ +Y+ F + L D + P + +W ++
Sbjct: 230 TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM--PFRDMGSWNAM 287
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I QNG ++L M G+ + S+L C L D +H +I+ G+
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
+ DL+ +NAL+NMYA+ N++
Sbjct: 348 EFDLFVSNALINMYAKFGNLE 368
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 4/189 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++H ++ KT F+ + L+ +Y + D++ L +
Sbjct: 522 TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +II C +G ++L F M+ GV PDH F S+L +C+ G
Sbjct: 582 PQESS-VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG 640
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ + G+ L ++++ ++ ++M YD + +AS+ L
Sbjct: 641 KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEM-AYDFIKDMPLQ--PDASIWGALLGA 697
Query: 186 PERNGNVEL 194
+GN+EL
Sbjct: 698 CRIHGNIEL 706
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + S A +H + K F+ + L+ +Y F + D+ +
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII QN V + FV+M +G PD S+ D +
Sbjct: 378 FI-TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436
Query: 126 ESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
SVH I+R G + D+ NA+++MYA+ +D S H+V +
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD------------------SAHKVFEI 478
Query: 185 IPERN 189
IP ++
Sbjct: 479 IPVKD 483
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I QNGL E++ + M + P+ + S+L + + + G +H
Sbjct: 485 ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG 544
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ + LD++ L+++Y +
Sbjct: 545 RVIKTNLHLDVFVATCLIDVYGK 567
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H+ I K L+ + FL LL +Y N D+ L P V W ++I
Sbjct: 648 GRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGL 707
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+QN V +L + M V PD F S L++C ++ + G H+ I G D D
Sbjct: 708 SQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDE 767
Query: 142 YTNNALMNMYAQ 153
T++AL++MYA+
Sbjct: 768 LTSSALVDMYAK 779
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ TL ++L S+ +HA+ K ++ ++ S L+ +Y + + +
Sbjct: 325 STRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKV 384
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
DTL V W +++ QNG E + F M G YPD + S+L +C L
Sbjct: 385 FDTL-NEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKY 443
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H+ II+ +L+ NAL++MYA+S ++
Sbjct: 444 LDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALE 480
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L +K QLH+ I K ++ F+ + L+ +Y + D+ + +
Sbjct: 430 TYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELI 489
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W II Q VE+ F RM G+ PD S+L +C + G
Sbjct: 490 RNR-DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQG 548
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VH ++ G + LY+ ++L++MYA+ +D S H++L +
Sbjct: 549 KQVHCLSVKTGQETKLYSGSSLIDMYAKCGAID------------------SAHKILACM 590
Query: 186 PERN 189
PER+
Sbjct: 591 PERS 594
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW SI+ ++ G + F + SGV+P+ F VL SC L + G VH
Sbjct: 126 LAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCN 185
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++++G + Y AL+ MYA+
Sbjct: 186 VVKMGFESISYCEGALIGMYAK 207
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +I + G VE++ F M +G+ + SVL + L FG VHA
Sbjct: 293 VAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAE 352
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ G+ ++Y ++L++MYA+ M+
Sbjct: 353 ALKQGLHSNVYVGSSLVSMYAKCGKME 379
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ L+ + + + H+ IF T + S L+ +Y V S+ + +
Sbjct: 734 TFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEM 793
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I +NG ++L F M S V PD F VL +C+
Sbjct: 794 SRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACS 845
>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 662
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
+ LL +Y+ N+V DS+ + ++L A V W S I QNG +L+ F M+ +
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSL-AYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSI 300
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
P+H S+L +C+ L GE +HA ++LGVD + + + AL+++Y + N++
Sbjct: 301 SPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVE 356
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
E + F+ + ++ +Y F + D+ + D + V + ++I Q+GL E+L
Sbjct: 132 FEVSDGFVATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGYNQHGLDGEALEV 190
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F M+GS + P+ SVL SC L D G+ +H +++ G++ + + +L+ MY++
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSK 250
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+ + K+ + K LH I K+ S F +L+ Y +++ ++ L D +
Sbjct: 6 SLIAQCTNKKSLTTLKSLHTHILKSGSLFS-FFGHKLIDGYIKCSVITEARKLFDEMPNR 64
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W S+I G E++ + M+ GV PD F ++ K+ + + R G+
Sbjct: 65 -HIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKA 123
Query: 129 HACIIRLGVDL-DLYTNNALMNMYAQSQNMD--MHIYDR 164
H + LG ++ D + +++MYA+ M ++DR
Sbjct: 124 HGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDR 162
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L S+ +Q+HA K ++F+ + L+ +Y V + + D+L
Sbjct: 306 TLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSL 365
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
T V+ ++I QNG E+L F R+ G+ P+ F S+L +C
Sbjct: 366 -TELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLAC 415
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 23/167 (13%)
Query: 36 PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTC 93
PN S F + +++ Y+ + V +L L K P V+W ++I +Q+G E+L
Sbjct: 189 PNPSLFCWNSMIYGYSKYGSVKKALELF--AKMPERDTVSWNTMISILSQHGFGAETLNT 246
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F+ M G P+ + SVL +CT + D +G +HA I+R+ LD+Y L++MYA+
Sbjct: 247 FLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK 306
Query: 154 SQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
GR S +V D + E N V +S + G
Sbjct: 307 C------------------GRLESARQVFDGLTEHNA-VSWTSLIGG 334
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLL 62
+ T ++L SI LHA+I + +EP + L+ +Y + + +
Sbjct: 259 SMTYASVLSACTSIYDLEWGAHLHARIVR-MEPCLDVYAGCGLIDMYAKCGRLESARQVF 317
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L T V+W S+I Q G E+L F +M V D +VL C D
Sbjct: 318 DGL-TEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDI 376
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQGFGF---- 170
GE +HA I G+D + NAL+ MYA+ ++ M I D
Sbjct: 377 SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 436
Query: 171 -NGGREASVHEVLDKIPERN 189
G E DK+PERN
Sbjct: 437 SQAGDVEKAREYFDKMPERN 456
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S++ Q G E L +++M+ GV D F + + +C L G + A
Sbjct: 458 ISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQ 517
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+LG ++ N+++ MY++
Sbjct: 518 AEKLGFSSNVSVANSVVTMYSR 539
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 18/114 (15%)
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+IRC T + + S+ + +M +G++PD + FP+VLKS L G+++H CII++
Sbjct: 112 SMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQM 171
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G + ++Y + AL+NMY ++ + +V D+IP+RN
Sbjct: 172 GFESNVYVSTALVNMYGTCSSV------------------SDARQVFDEIPDRN 207
>gi|218201765|gb|EEC84192.1| hypothetical protein OsI_30581 [Oryza sativa Indica Group]
Length = 715
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ--NGLL 87
+F TL N+ L S ++ FNL+ D+L LL + AW +II + N
Sbjct: 169 LFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYC 228
Query: 88 VESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+SL FV+++ GV P+ + SVL++C + FG S+H C+I+ G + + +A
Sbjct: 229 CKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSA 288
Query: 147 LMNMYAQSQNMD--MHIYDRFQ 166
L+++Y +S +D + +Y+ Q
Sbjct: 289 LVDLYCRSGAVDDAVMVYNGLQ 310
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T LL +I T Q K +HA + KT ++ ++ + L+ +Y+ V D+
Sbjct: 407 TRASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAA 466
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+ +P +W S+I QNG +E++ F RM+ + V P+ F +L
Sbjct: 467 FSCIMSP-NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGIL 517
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 76 SIIRCCTQNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
S++ QNG L E F +RM G+ + FP++L +C + G+ VHA +
Sbjct: 381 SMMSVLLQNGKLEEGRKLFEQIRMKGTRA----STFPALLHACATIGTIEQGKMVHALLC 436
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
+ + + Y AL++MY++
Sbjct: 437 KTPFESNGYVGTALVDMYSK 456
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL V++K Q +QLHA++ K+ S FL ++LL +Y + D++ + D + T
Sbjct: 52 LLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEM-TER 108
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W +++ +G +E++ + M GV D FPSVLK+C L + R G +H
Sbjct: 109 TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G ++ NAL+ MY + ++
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGDL 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ +K+++ +++H +FK + L + ++ +Y + +++++
Sbjct: 455 SVLRACSGLKSRNFIREIHGYVFKR-DLADIMLQNAIVNVYGEVGHRDYARRAFESIRSK 513
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S+I CC NGL VE+L F + + + PD S L + L + G+ +
Sbjct: 514 -DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEI 572
Query: 129 HACIIRLGVDLDLYTNNALMNMYA 152
H +IR G L+ ++L++MYA
Sbjct: 573 HGFLIRKGFFLEGPIASSLVDMYA 596
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-T 64
T ++LK ++ ++H K F+ + L+ +Y + + L D
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W SII G +E+L+ F RM GV + F + L+ +
Sbjct: 207 MMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H ++ D+Y NAL+ MYA+ M+
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRME 300
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QN L ++L F M S PD +++ + + G+ VHA
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IR G+D ++ N L++MYA+
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAK 396
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II QN +E++ F ++ G+ D + SVL++C+ L F +H
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + + D+ NA++N+Y + + D
Sbjct: 476 VFKRDL-ADIMLQNAIVNVYGEVGHRD 501
>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+QA++L Q+ + N ++ ++ Y N VH + L + ++ AW ++I C
Sbjct: 206 AQARELFEQM--PVRSNVSWIT--MISGYANSGDVHAAGELFERMENKKDLYAWNAMIAC 261
Query: 81 CTQNGLLVESLTCFVRMIGSGVY--PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+NG E+L F RM+ V+ P+ F SV+ +C+ L D RFG + + +G++
Sbjct: 262 YAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWAESFMGSVGIE 321
Query: 139 LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
LD + AL++++ +S +D +D F+G G
Sbjct: 322 LDDHLRTALVDLHTKSGRID-RAFDLFRGLGM 352
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+ N V+ +S Q+HAQ+F + + FLI++L+ + + + D P
Sbjct: 51 SLIDNSVN---RSHLNQIHAQLFVSRLQYNGFLITKLVNCCATLGEIRYARNVFDYY--P 105
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF-RFGE 126
P V W +IIRC T+ L ++ + RM + + PD FP VLK+CT + F G
Sbjct: 106 DPDVFLWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGR 165
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
VH R G++ D++ N L+ YA+ + + +
Sbjct: 166 RVHGQAFRHGLEADVFVQNGLVTFYAKCRKISL 198
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII QNG +E+L F +M V PD SVL++ T + D G+S+H C
Sbjct: 212 VSWTSIISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGC 271
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I++G++ ++ +L MYA+
Sbjct: 272 VIKMGLEFEIDLLISLTAMYAK 293
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L+ ++ K +H + K LE LIS L +Y V + D
Sbjct: 248 ALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLIS-LTAMYAKCGQVMFARLFFDQ 306
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ P + W ++I +NG E+L F RMI PD SV+ +C +
Sbjct: 307 VRIP-NLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLEL 365
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR------------FQGFGF 170
+ I R D + ++AL++M+++ ++D+ ++DR G+G
Sbjct: 366 ARWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGL 425
Query: 171 NGGREASVH 179
+G + S++
Sbjct: 426 HGRGQESIN 434
>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
Length = 704
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ--NGLL 87
+F TL N+ L S ++ FNL+ D+L LL + AW +II + N
Sbjct: 124 LFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYC 183
Query: 88 VESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+SL FV+++ GV P+ + SVL++C + FG S+H C+I+ G + + +A
Sbjct: 184 CKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSA 243
Query: 147 LMNMYAQSQNMD--MHIYDRFQ 166
L+++Y +S +D + +Y+ Q
Sbjct: 244 LVDLYCRSGAVDDAVMVYNGLQ 265
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T LL +I T Q K +HA + KT ++ ++ + L+ +Y+ V D+
Sbjct: 397 SASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAF 456
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+ +P +W S+I QNG +E++ F RM+ + V P+ F +L
Sbjct: 457 SCIMSP-NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGIL 506
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + +K V W S+I QN E+L F M + + FP++L +C +
Sbjct: 353 LFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIG 412
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VHA + + + + Y AL++MY++
Sbjct: 413 TIEQGKMVHALLCKTPFESNGYVGTALVDMYSK 445
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
L+ V + S KQ+HA+I K + +R ++ ++L+ Y + + + + L+
Sbjct: 57 LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVR 116
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+W +II + GL +L FV M+ + ++PD+ V P+V K+C L RFG V
Sbjct: 117 -NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGV 175
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H +I+ G++ ++ ++L +MY + +D +V D+IPER
Sbjct: 176 HGYVIKAGLEDCVFVASSLADMYGKCGVLD------------------DARKVFDEIPER 217
Query: 189 N 189
N
Sbjct: 218 N 218
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 158 NVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIP-E 216
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ F M GV P + L + +V G+
Sbjct: 217 RNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQS 276
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +L+N Y +
Sbjct: 277 HAIAIVNGLELDNILGTSLLNFYCK 301
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L + L FG S+H
Sbjct: 492 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGY 551
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L + +L++MYA+ +++
Sbjct: 552 IIRNLRHSSSVSIETSLVDMYAKCGDIN 579
>gi|255565775|ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536965|gb|EEF38603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 302
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + +L+ ++ K + Q+HAQ + F+ S+L+ Y + + +
Sbjct: 1 MATIPLYASLIDACITTKNFTTLIQIHAQTITNGIYHRDFIRSKLVSAYASCTQMRQA-A 59
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LL + + S+IR L SL+ F RM+ + D + PSVLKSC L
Sbjct: 60 LLFSFTNRQTTFLFNSLIRAYASLNLFSHSLSFFRRMLDACKPIDRHTLPSVLKSCAGLS 119
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
R G+ VH ++ G+ DL +NAL+NMYA+ N+ A +
Sbjct: 120 AVRLGQQVHGILLINGLAFDLANSNALINMYAKCGNL------------------AGARK 161
Query: 181 VLDKIPERNGNVELSSGLAG 200
V D++P RN V ++ +AG
Sbjct: 162 VFDRMPARN-EVSWATMMAG 180
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL+ +LK + + KQ H + K+ + + L+ +Y F D+
Sbjct: 313 SEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGF 372
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L P V W SII QNG E+L+ + RM + P+ SVLK+C+ L
Sbjct: 373 DFLLEP-DLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAAL 431
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +HA I+ G+ +L +AL MYA+ +++
Sbjct: 432 EQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLE 467
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + K +++ L+ +Y ++ SL L + + + + W ++I +
Sbjct: 232 GKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFE-MCSDKNAITWSALITGYS 290
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G ++L F +M +G P VLK+C+ + G+ H +++ G + +Y
Sbjct: 291 QAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIY 350
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNG 172
T AL++MYA+ FGF G
Sbjct: 351 TATALVDMYAK--------------FGFTG 366
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLD 63
++ NLL K+ + + LHA I K +S +L + L+ Y +H + + +
Sbjct: 8 RSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFE 67
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
LK V++ +I + NG + L F RMI + + PD + FP V + L +
Sbjct: 68 NLKHK-NVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLG 126
Query: 122 FRF-GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
F VH I+ D++ ++L+N Y + G +
Sbjct: 127 CNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKV------------------GCVFEARK 168
Query: 181 VLDKIPERN 189
+ D++PERN
Sbjct: 169 LFDRMPERN 177
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK ++ Q KQ+HA+ K + S L +Y + + + + +
Sbjct: 417 TMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM 476
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I +QNG E+L F M G PDH F +VL +C+
Sbjct: 477 -LQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACS 527
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+Q+H KT + F+ S L+ Y V ++ L D + V+W ++I
Sbjct: 131 ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRM-PERNLVSWTTMISGYA 189
Query: 83 QNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKS--CTLLVDFRFGESVHACIIRLGVD 138
+ E+L F +R++ + + VF SVL + C VD G+ VH +++ GV
Sbjct: 190 SKQMAKEALGVFGLMRLVEGNL--NEFVFTSVLSALVCPEFVDS--GKQVHCVVVKNGVL 245
Query: 139 LDLYTNNALMNMYAQSQNMD 158
+ NAL+ MYA+ N++
Sbjct: 246 EFVSVLNALVTMYAKCGNLN 265
>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
Length = 749
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ--NGLL 87
+F TL N+ L S ++ FNL+ D+L LL + AW +II + N
Sbjct: 169 LFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYC 228
Query: 88 VESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+SL FV+++ GV P+ + SVL++C + FG S+H C+I+ G + + +A
Sbjct: 229 CKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSA 288
Query: 147 LMNMYAQSQNMD--MHIYDRFQ 166
L+++Y +S +D + +Y+ Q
Sbjct: 289 LVDLYCRSGAVDDAVMVYNGLQ 310
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T LL +I T Q K +HA + KT ++ ++ + L+ +Y+ V D+
Sbjct: 442 SASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAF 501
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+ +P +W S+I QNG +E++ F RM+ + V P+ F +L
Sbjct: 502 SCIMSP-NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGIL 551
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + +K V W S+I QN E+L F M + + FP++L +C +
Sbjct: 398 LFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIG 457
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VHA + + + + Y AL++MY++
Sbjct: 458 TIEQGKMVHALLCKTPFESNGYVGTALVDMYSK 490
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ L NP ++ +Q+HA + + ++ + + ++ +Y + + + D +
Sbjct: 187 TLLKSLVNPRALDI---GRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQM 243
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
PVAW ++ TQ G ++L FV +I GV D VF VLK+C L + RFG
Sbjct: 244 AVK-KPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFG 302
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +HAC+ +LG++ ++ L++ Y + + +
Sbjct: 303 KQIHACVAKLGLECEVSVGTPLVDFYIKCSSFE 335
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ S + LH ++ +E S L + +L +Y + D+ L D + + V+ +
Sbjct: 94 LRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEM-SDLNAVSRTT 152
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I + GLL +++ F RM+ SG P +++ ++LKS G +HA +IR G
Sbjct: 153 MISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAG 212
Query: 137 VDLDLYTNNALMNMYAQ 153
+ + ++NMY +
Sbjct: 213 LCSNASIETGIVNMYVK 229
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK S++ KQ+HA + K + + L+ Y + + ++ P
Sbjct: 289 VLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREP- 347
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W +II Q E++ F + + V + + S+ ++C++L D G V
Sbjct: 348 NDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQV 407
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
HA I+ + Y +AL+ MY++ +D
Sbjct: 408 HADAIKRSLIGSQYGESALITMYSKCGCLD 437
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 16 SIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
S K S+ +Q+HA + + NS FL +RL+F+Y + D+ L D + P +
Sbjct: 126 SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM--PHKTIFT 183
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I NG + SL + M SG+ D FP +LK+C LL D R G VH I
Sbjct: 184 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAI 243
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
+ G ++ N+++ MY + ++ NG R ++ D++PE+ V
Sbjct: 244 KEGYVSIVFVANSIVGMYTKCNDL-------------NGAR-----QLFDRMPEKEDVVS 285
Query: 194 LSSGLAG 200
+S ++
Sbjct: 286 WNSMISA 292
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 71/148 (47%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK +K + ++H K + F+ + ++ +Y N ++ + L D +
Sbjct: 222 ILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKE 281
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + NG +E+L F M + + P+ F + L++C + G +H
Sbjct: 282 DVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 341
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
A +++ ++++ NAL+ MYA+ M
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKM 369
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL---LDTLKTPAPPVAWKSII 78
Q +HA + K+ + F+ + L+ +Y F + ++ + +D T ++W S++
Sbjct: 336 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT----ISWNSML 391
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
QNGL E+L + M +G PD S++ + + G +HA ++ G+D
Sbjct: 392 SGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD 451
Query: 139 LDLYTNNALMNMYAQ 153
DL N+L++MYA+
Sbjct: 452 SDLQVGNSLVDMYAK 466
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C NGL E+L F M +GV PD S+L + L + G+ +H
Sbjct: 586 VSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 645
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G L+ + L++MYA+ ++
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLE 672
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA K + + + L+ +Y F + C+ D + V+W +II QN
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQN 498
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G +L F + G+ D + S+L +C+ L + +H+ IIR G+ DL
Sbjct: 499 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQ 557
Query: 145 NALMNMYAQSQNMD 158
N ++++Y + N+D
Sbjct: 558 NGIVDVYGECGNVD 571
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 14 PVSIKTKSQAK---QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT---LKT 67
PV +K + Q+HA T + F+ + L+ +Y F +V ++ + D +
Sbjct: 107 PVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGG 166
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V+W ++I +N +++ F M+ SG P+ F V+ +CT D G
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ 226
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
VH ++R G + D++T NAL++MY++ +++M
Sbjct: 227 VHGAVVRTGYEKDVFTANALVDMYSKLGDIEM 258
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
+Q+H + +T F + L+ +Y+ + + + + K PA V +W + I C
Sbjct: 224 GRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFE--KMPAADVVSWNAFISGC 281
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+G +L ++M SG+ P+ SVLK+C F G +H +++ D D
Sbjct: 282 VTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDE 341
Query: 142 YTNNALMNMYAQSQNMD 158
+ L++MYA+ +D
Sbjct: 342 FVAVGLVDMYAKHGFLD 358
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL----- 65
++ P +I + +F +S L S LL ++N L S C L +
Sbjct: 1 MRTPETIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVF 60
Query: 66 -KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ P P V+W S++ + NG+ ++L F M G GV + P VLK D R
Sbjct: 61 DEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAP---DVR 117
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQGFG 169
FG VHA + + D++ NAL+ +Y +D ++D + G G
Sbjct: 118 FGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVG 165
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L +LL S+ Q KQ+HA + K + F + L++ Y + D+ L
Sbjct: 513 LSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLP 572
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G +L F RM+ GV P+H SVL +C
Sbjct: 573 ERGI-VSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC 621
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK+ S + +Q+HA K + +I+ L+ Y + ++ +
Sbjct: 411 TLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKES 470
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ ++ +++ +Q +++ FV+M+ G+ PD V S+L +CT L + G
Sbjct: 471 RSD-DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQG 529
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA +I+ D++ NAL+ YA+ +++
Sbjct: 530 KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIE 562
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + +Q+H + K + F+ L+ +Y + D+ + D +
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFR 123
+ W ++I C+ +G E L+ F RM G+ D N SVLKS
Sbjct: 368 PRR-DLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAIC 426
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
VHA ++G+ D + N L++ Y + +D I
Sbjct: 427 HTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAI 464
>gi|413918046|gb|AFW57978.1| hypothetical protein ZEAMMB73_147394 [Zea mays]
Length = 729
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII--------RCC 81
+F++L P + L S ++ F L+ ++L LL P AW ++I +CC
Sbjct: 164 LFESLRPKNELLWSPMVVALVRFGLLAEALDLLQNTPAPRDVFAWTAVISGYAKGTDQCC 223
Query: 82 TQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ +L FV+++ GV P+ + SVL++C L FG SVH C+IR G +
Sbjct: 224 GK------ALQLFVKLLADDGVMPNEYTYDSVLRACVRLGALDFGRSVHGCLIRCGFRSE 277
Query: 141 LYTNNALMNMYAQSQNMD 158
+AL+++Y S +D
Sbjct: 278 QLITSALVDLYCTSDALD 295
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T LL +I T Q + +H + KT +S + + L +Y V D+
Sbjct: 437 SPSTFSALLHACATIGTLEQGRMVHCHLCKTSFDSSDHVGTALADMYFKCGCVIDAQSAF 496
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+ +P +W S+I QNG +E+L+ F RM+ V P+ F +L
Sbjct: 497 TYVTSPNV-ASWTSLINGLAQNGHWLEALSQFGRMLKHHVKPNEITFLGLL 546
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
+IF+ + + ++ ++ + + + L L +K + W S+I QN
Sbjct: 361 RIFEKMPRRNMVSLNSMMSVLLQNGRLEEGLKLFKQIKDERDTITWNSMISGYIQNDKPS 420
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L FV M + + F ++L +C + G VH + + D + AL
Sbjct: 421 EALKLFVVMCRLSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKTSFDSSDHVGTALA 480
Query: 149 NMY 151
+MY
Sbjct: 481 DMY 483
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
I + K +H + KT N + + + L+ +Y ++ + + + + ++W S
Sbjct: 427 IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKM-FEKDVISWTS 485
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ TQNG ESL F M SGV PD + S+L +C L FG+ VH+ I+LG
Sbjct: 486 LVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLG 545
Query: 137 VDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQ------GFGFNG-GREA 176
+ L NN+L+ MYA+ +D MH+ D G+ NG GR++
Sbjct: 546 LRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDS 600
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL ++L+ ++ + + +H + K ++ ++++ L+ +Y + ++ L
Sbjct: 211 SQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILF 270
Query: 63 DTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L V W +++ QNG +++ F M GV + FPS+L +C+ +
Sbjct: 271 KGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSA 330
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
FGE VH CI+R G + Y +AL++MYA+ ++
Sbjct: 331 HCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDL 366
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ +Q+H I + + ++ S L+ +Y + + +L+ +
Sbjct: 317 TFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENM 376
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S+I C ++G E++ F +M + DH FPSVL C +V G
Sbjct: 377 EDD-DVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC--IVGRIDG 433
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+SVH +I+ G + +NAL++MYA++++++
Sbjct: 434 KSVHCLVIKTGFENYKLVSNALVDMYAKTEDLN 466
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E+ F RM G P S+L+ C+ L + GE +H +++ G + ++Y
Sbjct: 191 GRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVV 250
Query: 145 NALMNMYAQSQNMDMHIYDR---FQGFGFNGG 173
L++MYA+ + HI + F+G FN G
Sbjct: 251 AGLVDMYAKCR----HISEAEILFKGLAFNKG 278
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSII 78
K Q+HAQ+ + S FL+++ + N + + + D P P V W +II
Sbjct: 84 KRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEF--PEPSVFLWNAII 141
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
R + + +++ + RM SGV PD P VLK+C+ + G+ VH I RLG +
Sbjct: 142 RGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFE 201
Query: 139 LDLYTNNALMNMYAQ 153
D++ N L+ +YA+
Sbjct: 202 SDVFVQNGLVALYAK 216
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + K++H QIF+ + F+ + L+ +Y V + + + L
Sbjct: 171 TLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGL 230
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I QNGL +E+L F +M V PD SVL++ T + D G
Sbjct: 231 DD-RNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQG 289
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+S+H C++++G++ + +L MYA+
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAMYAK 317
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L+ ++ Q K +H + K LE LIS L +Y V + D
Sbjct: 272 ALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS-LTAMYAKCGQVMVARSFFDQ 330
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ P + W ++I +NG E++ F MI + D S + +C +
Sbjct: 331 MEIPNV-MMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ + I + D++ N AL++M+A+ ++D+ ++DR
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HA + KT + +L +RLL Y + + D+ +LD + V+W ++I +
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV-VSWTAMISRYS 129
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E+LT F M+ S P+ F +VL SC G+ +H I++ D ++
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++L++MYA++ G+ E+ + +PER+
Sbjct: 190 VGSSLLDMYAKA------------------GQIKEAREIFECLPERD 218
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L + + KQ+H I K + F+ S LL +Y + ++ + + L
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F R+ G+ P++ + S+L + + L G
Sbjct: 215 -PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ H ++R + N+L++MY++ N+
Sbjct: 274 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 305
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
S+LL +Y +F + D+ + D + AW S+I + GL ++L + +M G
Sbjct: 93 SKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEG 152
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V PD+ FP VLK+C + + GE+VH ++R G D++ NAL++MY++
Sbjct: 153 VEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSK 204
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 17/209 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + + +H + ++ F+++ L+ +Y+ + + + D +
Sbjct: 159 TFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQI 218
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S++ T++GL E+L F +MI G PD ++L + + +F
Sbjct: 219 EYK-DIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNIS---SMKFK 274
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA-------------QSQNMDMHIYDRFQGFGFNG 172
+H +IR GV+ +L N+L+ MYA Q DM ++ FN
Sbjct: 275 LHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNS 334
Query: 173 GREASVHEVLDKIPERNGNVELSSGLAGC 201
+ EV++ + V S L+ C
Sbjct: 335 AEALTYFEVMESLGVSPDGVTFVSLLSTC 363
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSL 59
+ S L LLKN +S + + +HA+I KTL+ P FL + L+ +Y+ + H
Sbjct: 3 LLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLD--HPES 60
Query: 60 CLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L TPA V+W S+I QNG +L F M GV P+ FP K+
Sbjct: 61 ARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 120
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L G+ +HA ++ G LD++ + +MY +++ D
Sbjct: 121 LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRD------------------DA 162
Query: 179 HEVLDKIPERN 189
++ D+IPERN
Sbjct: 163 RKLFDEIPERN 173
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
K S++ KQ+HA K F+ +Y L D+ L D +
Sbjct: 115 FKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNL 174
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
W + I +G E++ F+ +P+ F + L +C+ + G +H
Sbjct: 175 ET-WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHG 233
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G D D+ N L++ Y + + +
Sbjct: 234 LVLRSGFDTDVSVCNGLIDFYGKCKQI 260
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + ++ + + L+ Y + S + + T V+W S++ QN
Sbjct: 230 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA-VSWCSLVAAYVQN 288
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++ ++R V + SVL +C + G S+HA ++ V+ ++
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 348
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + ++ D Q F D++PE+N
Sbjct: 349 SALVDMYGKCGCIE----DSEQAF--------------DEMPEKN 375
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
K +H + K+ ++S + +Y N+ D++ L D + P VA W ++I C
Sbjct: 317 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM--PERDVASWNNVISCY 374
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q+G ++L F M SG PD +V+ SC L+D G+ +H ++R G LD
Sbjct: 375 YQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG 434
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGGREASVHEVLDKIPE 187
+ ++AL++MY + ++M ++++ Q G+ G ++ + E+ ++ E
Sbjct: 435 FVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCI-ELFRRMDE 493
Query: 188 ---RNGNVELSSGLAGCNK 203
R LSS L C++
Sbjct: 494 EGIRPTLTTLSSILMACSR 512
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K +H +I N+ L L+ +Y + +L + + T++ P W ++ CT
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273
Query: 83 QNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+N + +E L F R++ + PD +PSVLK+C+ L +G+ VH +I+ G +D+
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333
Query: 142 YTNNALMNMYAQ 153
++ + MYA+
Sbjct: 334 VVMSSAVGMYAK 345
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I + G +E+L F M +GV PD F SVL +C+ L G+ +H
Sbjct: 567 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 626
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
II ++++ AL++MYA+ +D +HI+++
Sbjct: 627 IIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 662
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++ + + + K++H ++ ++ F+ S L+ +Y + + + + +
Sbjct: 401 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 460
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S+I + G + F RM G+ P S+L +C+ V+ + G
Sbjct: 461 QRKNV-VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 519
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H IIR V+ D++ N++L+++Y + N+
Sbjct: 520 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 551
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + K++H I ++ + ++ LL +Y V ++L + + L
Sbjct: 603 TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 662
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G E+L F +M S PD F ++L +C+
Sbjct: 663 PE-RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS-------- 713
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD Y N ++ Y ++ Y GR +E+L +
Sbjct: 714 ---HAGL----VDEGCYYFNQMIAEYGFKPAVEH--YSCLIDLLGRVGRLREAYEILQRT 764
Query: 186 PERNGNVELSSGLAGCNKFEKRV 208
P+ +V L S L K++
Sbjct: 765 PDIREDVGLLSTLFSACHLHKKL 787
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ T NL+ SI++ K++H I K+ L + +L +Y + D+ D
Sbjct: 157 SSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFD 216
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
T++ V+W +I +QNG +++ +++M+ SG +PD F S++K+C + D
Sbjct: 217 TMQL-RNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDID 275
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRF 165
G +H +I+ G D L NAL++MY + + +H D F
Sbjct: 276 LGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQI-VHASDVF 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T ++LL S T +Q Q+H+ I K + + LL +Y + +HD+
Sbjct: 458 MPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFN 517
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + A V+W +I+ C Q+ E F M+ S PD+ ++L +C L
Sbjct: 518 VFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELA 577
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRF 165
G VH ++ G+ +D+ +N L++MYA+ ++ H D F
Sbjct: 578 SLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLK-HARDVF 621
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+QLH + K+ + + L+ +Y F +VH S T+ + ++W S+I
Sbjct: 277 GRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVF--TMISTKDLISWASMITGF 334
Query: 82 TQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
TQ G +E+L F M G Y P+ +F SV +C L++ FG +H + G+ +
Sbjct: 335 TQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRN 394
Query: 141 LYTNNALMNMYAQ 153
++ +L +MYA+
Sbjct: 395 VFAGCSLCDMYAK 407
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H K + F L +Y F + ++ +++P V+W +II +
Sbjct: 379 GRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESP-DLVSWNAIIAAFS 437
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+G + E++ F +M+ +G+ PD F S+L +C V G +H+ II++G+D +
Sbjct: 438 DSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAA 497
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGF 168
N+L+ MY + N+ +D F F
Sbjct: 498 VCNSLLTMYTKCSNL----HDAFNVF 519
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LLKN +S + + +HA+I KTL+ P FL + L+ +Y+ + H L TP
Sbjct: 12 LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLD--HPESARLVLRLTP 69
Query: 69 AP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
A V+W S++ QNG +L F M GV P+ FP V K+ L G+
Sbjct: 70 ARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQ 129
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+HA ++ G LD++ + +MY +++ D ++ D+IPE
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRD------------------DARKLFDEIPE 171
Query: 188 RN 189
RN
Sbjct: 172 RN 173
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+ K S++ KQ+HA K F+ +Y L D+ L D +
Sbjct: 114 VFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN 173
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDFRFGES 127
W + I +G E++ F+ G P+ F L +C+ LL+D G
Sbjct: 174 LET-WNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDL--GMQ 230
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+H + R G D D+ N L++ Y + + +
Sbjct: 231 MHGLVFRSGFDTDVSVYNGLIDFYGKCKQI 260
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H +F++ + + L+ Y + S + + V+W S++ QN
Sbjct: 230 QMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNA-VSWCSLVAAYVQN 288
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++ ++R V + SVL +C + G S+HA ++ V+ +++
Sbjct: 289 HEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVG 348
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + ++ D Q F D++PE+N
Sbjct: 349 SALVDMYGKCGCIE----DSEQAF--------------DEMPEKN 375
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
Q+H+ ++++ + ++ S L+ +Y+ V + + D + T V+W S+I C
Sbjct: 170 GSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEM-TVRSRVSWNSLITCYE 228
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QNG + E+L FV MI GV PD SV+ +C + + G+ +HA +++ DL
Sbjct: 229 QNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDL 288
Query: 142 YTNNALMNMYAQ 153
NAL++MYA+
Sbjct: 289 ILGNALLDMYAK 300
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 37/185 (20%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL +++ +I + +Q+HA++ K E N L + LL +Y N ++++ + D
Sbjct: 254 TLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDM 313
Query: 65 L----------------KTPAPPVA--------------WKSIIRCCTQNGLLVESLTCF 94
+ K VA W ++I CTQNG E+L F
Sbjct: 314 MPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILF 373
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR------LGVDLDLYTNNALM 148
+ V+P H F ++L +C L D + G H+ +++ G D D++ N+L+
Sbjct: 374 RLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLI 433
Query: 149 NMYAQ 153
+MY +
Sbjct: 434 DMYMK 438
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 30/174 (17%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---- 65
LL ++ ++HA I K+ + F+ +RL+ +Y V + L D +
Sbjct: 25 LLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERN 84
Query: 66 -------------------------KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
K P +W S+I Q+G E+L F +M G
Sbjct: 85 IFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHG 144
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G + F S L +C L D + G +H+ + R D+Y +AL++MY++
Sbjct: 145 HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSK 198
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T NLL ++ +Q H+ + F+ E + F+ + L+ +Y V +
Sbjct: 387 TFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENG- 445
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
C + V+W ++I QNG ++L F +M+ SG PDH VL +C+
Sbjct: 446 CRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACS 503
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL+ K+ + K +H I + +R+L + L+F+Y + D++ + + L P
Sbjct: 31 SLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELL--P 88
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P V +W ++I + G L E L F +M G PD VF +VL +C+ G++
Sbjct: 89 CPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+H C++ G++ + NA++N+Y + GR V +++PE
Sbjct: 149 IHDCVVLAGMETQV-VGNAIVNLYGKC------------------GRVHEAKAVFERLPE 189
Query: 188 RN 189
RN
Sbjct: 190 RN 191
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDH 106
+Y VH++ + + L V+W ++I QNG +++ F M + V P+
Sbjct: 170 LYGKCGRVHEAKAVFERLPER-NLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPND 228
Query: 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
F SV+ +C+ L+D G+S H IIR G D L+ N+L+NMY + ++D
Sbjct: 229 ATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVD 280
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVHDSLCLLDTLKTPAPPVAWK 75
+ K H +I +T + F+ + L+ +Y ++ LV + + L D L +W
Sbjct: 246 RGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSV----YSWT 301
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
II NG L+E+ F +M GV P+ F +VL++CT L E + A + L
Sbjct: 302 VIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQC---EKIFARVKHL 358
Query: 136 GVDLDLYTNNALMNMYAQ 153
G++LD A ++ +A+
Sbjct: 359 GLELDTTLGTAFVSTFAK 376
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+A+Q+HA + + + L L+ +Y V + + + LK + VAW S++
Sbjct: 446 RAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSV-VAWNSMLSAF 504
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG SL + RM+ G PD + +VL +C + + R +A L +LD+
Sbjct: 505 ASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEAR----RYAATFEL--ELDI 558
Query: 142 YTNNALMNMYAQ 153
NA ++ YA+
Sbjct: 559 AARNAAVSAYAR 570
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 49 YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
Y + ++ D ++ V W ++I Q+G ++L CF +M GV +
Sbjct: 568 YARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVT 627
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + L++C+ L D G +HA I+ + + +NA++NMY + ++D
Sbjct: 628 YLASLEACSSLKDLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLD 676
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIF--KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T + L+ S+K ++ +QLHA+I E N L + ++ +Y + +++ +
Sbjct: 627 TYLASLEACSSLKDLTRGRQLHARILLENIHEAN---LSNAVINMYGKCGSLDEAM--DE 681
Query: 64 TLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+K P V +W ++I Q+G ++L F +M G PD + + +C +
Sbjct: 682 FVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSL 741
Query: 123 RFGESVHACIIRLG--VDLDLYTNNALMNMYAQ 153
G+++H+ + ++ D AL+ MYA+
Sbjct: 742 ALGKTIHSIVATAAPCLEQDPGVATALVTMYAR 774
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL+ +L + KQ+H + K + ++++ L+ +Y + D+
Sbjct: 312 SEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGF 371
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ L+ P V W S+I QNG ++L+ + RM G+ P+ SVLK+C+ L F
Sbjct: 372 NYLQQP-DLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAF 430
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +HA I+ G+ L++ +AL MYA+ N++
Sbjct: 431 DQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLE 466
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
K+ + + LHAQI K +S +L + L+ Y + + + D + ++W
Sbjct: 21 KSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNK-DVISWNC 79
Query: 77 IIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I +Q G S + F RM + P+ + F + + + L FG+ HA I+
Sbjct: 80 LINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIK 139
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ D++ ++L+NMY ++ G F EV D++PERN
Sbjct: 140 MACFYDVFVGSSLLNMYCKA------------GLLFEA------REVFDRMPERN 176
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H KT +++ L+ +Y + DSL + + + + W ++I
Sbjct: 231 GKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFE-MSNDKNSITWSAMITGYA 289
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G ++L F RM +G+ P VL +C+ G+ VH +++LG + LY
Sbjct: 290 QSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLY 349
Query: 143 TNNALMNMYAQS 154
AL++MYA+S
Sbjct: 350 IMTALVDMYAKS 361
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH I KT + F+ S L+ +Y+ ++ + ++L + D + T V W SII Q
Sbjct: 172 RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPT-RDLVVWNSIIGGFAQ 230
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L F RM +G D SVL++CT L G VH +++ D DL
Sbjct: 231 NSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF--DQDLIL 288
Query: 144 NNALMNMYAQSQNMD 158
NNAL++MY + +++
Sbjct: 289 NNALIDMYCKCGSLE 303
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 21 SQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ K++H IF K EP F+++ LL +Y FNL+ ++ L D + V+W ++I
Sbjct: 72 QEGKRVHEHIFCKGYEPKM-FVVNTLLNMYVKFNLLEEAEDLFDEM-PERNVVSWTTMIS 129
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ N L ++L C + M GV P+ + SVL++C L + R +H II+ G++
Sbjct: 130 AYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLES 185
Query: 140 DLYTNNALMNMYAQSQNMD 158
D++ +AL+++Y++ ++D
Sbjct: 186 DVFVRSALIDVYSKWSDLD 204
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LK VS+ +HA IFK ++ F+ + L+ Y+ V + + D +
Sbjct: 144 TILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGI-LY 202
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++ C +N E+L F +M G P++ F SV K+C L F G+SV
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H C ++ +LDLY AL+++Y +S ++D
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDID 292
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ K + ++ K +H K+ ++ LL +Y + D+ + +
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEI 301
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ E++ F +M + V P+ F SVL++C + G
Sbjct: 302 PKK-DVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H +I++G+ D++ +NALM++YA+ M+
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 393
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ +++ + Q+H + K + F+ + L+ +Y + +S+ L
Sbjct: 343 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAES 402
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
W ++I Q G ++L F+ M+ V + S L++C L G
Sbjct: 403 PHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPG 462
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ ++ D D+ NAL++MYA+
Sbjct: 463 LQIHSLTVKTTFDKDIVVTNALIDMYAK 490
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N L++ + S+ K LH +I K F + LL +Y + + D+ L D +
Sbjct: 43 NALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM-PE 101
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE-- 126
+++ ++I+ ++ +E++ FVR+ G + VF ++LK LLV GE
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILK---LLVSMDCGELG 158
Query: 127 -SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+HACI +LG + + + AL++ Y+ +D+
Sbjct: 159 WGIHACIFKLGHESNAFVGTALIDAYSVCGRVDV 192
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 45 LLFIYNNFN-LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY 103
++F Y N +V SLC + V+W S++ Q G +ES+ F+ M SGV
Sbjct: 121 MIFGYAASNDMVRASLCF--EMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVE 178
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D+ F +LK C++L +++ G +H +R+G D D+ + +AL++MYA+ + +D
Sbjct: 179 FDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLD 233
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II C QN L L F M GV +++ SVLKSC L D R G +HA
Sbjct: 248 ISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAH 307
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D A ++MYA+ NM
Sbjct: 308 ALKSDFVKDGIVRTATLDMYAKCNNM 333
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L L+ ++K S+ QLH K+ + + + + +Y + ++ + D +
Sbjct: 385 SLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEM 444
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II QN ++L V M+ SG+ PD F SVLK+C G
Sbjct: 445 GRK-DAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACA-GDSLNHG 502
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H I++LG+ + Y ++L++MY++ +D
Sbjct: 503 MEIHTTIVKLGMASNPYIGSSLVDMYSKCGMID 535
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II ++ F RM+ G+ PD + +VL +C L G+ +HA
Sbjct: 577 VSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAH 636
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+I+ + D+Y + L++MY++ N+
Sbjct: 637 VIKKELQYDVYICSTLVDMYSKCGNL 662
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRCC 81
KQ+HA + K ++ S L+ +Y+ +HDS + + K P V W ++I
Sbjct: 630 GKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFE--KAPIRDFVTWNAMICGY 687
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G+ E++ F M+ + P+H F S+L++C
Sbjct: 688 AHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACA 723
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H K + F+ + LL +Y V D++ L D +
Sbjct: 142 TLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGM 201
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-------- 117
+P V++ +++ Q G + ++L F RM SGV D SVL SC
Sbjct: 202 ASP-NEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFD 260
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF---------- 165
++ FR G+ +HA I+R G D + N+L++MY + MD + ++D
Sbjct: 261 VVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNI 320
Query: 166 --QGFGFNGGREASVHEVLDKIPERNG---NVELSSGLAGCNKFEKRVVSA 211
GFG G A EVL+ + E V S+ LA C K + V+SA
Sbjct: 321 LITGFG-QAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIK-ARDVLSA 369
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 17/194 (8%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ + L N F+ S L+ +Y+ + + + + + T V W S+I +
Sbjct: 437 QVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRM-TERDVVCWNSMISGLAIH 495
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L E+ F +M G+G+ P + + S++ SC L G +HA I++ G D ++Y
Sbjct: 496 SLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVG 555
Query: 145 NALMNMYAQSQNMD--------------MHIYDRFQGFGFNGGREASVH--EVLDKIPER 188
+AL++MYA+ NMD + + G+ NG E +V E + +R
Sbjct: 556 SALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQR 615
Query: 189 NGNVELSSGLAGCN 202
V + L GC+
Sbjct: 616 PDGVTFIAVLTGCS 629
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I ++ E+L + M+ G+ P H SVL +C + G H
Sbjct: 106 VSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGL 165
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++G+D +L+ NAL+ MY +
Sbjct: 166 AVKVGLDENLFVENALLGMYTK 187
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + + +++ + + + Q +Q+HAQI K + ++ S L+ +Y + D+
Sbjct: 514 MPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARV 573
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
D + T VAW +I QNG +++ F M+ + PD F +VL C+
Sbjct: 574 FFDCMVTK-NIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCS--- 629
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
H+ + VD + N++ + Y + + H G G GR V
Sbjct: 630 --------HSGL----VDEAIAFFNSMESTYGITP-LAEHYTCLIDGLG-RAGRLVEVEA 675
Query: 181 VLDKIPERNGNVELSSGLAGC 201
++D +P ++ + LA C
Sbjct: 676 LIDNMPCKDDPIVWEVLLAAC 696
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + P+ W +++ Q L +++ F RM V PD +L SC+ L
Sbjct: 372 MFDKISRPSV-TTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLG 430
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH+ +R + D++ + L++MY++
Sbjct: 431 ILDLGTQVHSASVRFLLHNDMFVASGLVDMYSK 463
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
S+LL +Y +F + D+ + D + AW S+I + GL ++L + +M G
Sbjct: 93 SKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEG 152
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V PD+ FP VLK+C + + GE+VH ++R G D++ NAL++MY++
Sbjct: 153 VEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSK 204
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 17/209 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + + +H + ++ F+++ L+ +Y+ + + + D +
Sbjct: 159 TFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQI 218
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S++ T++GL E+L F +MI G PD ++L + + +F
Sbjct: 219 EYK-DIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNIS---SMKFK 274
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA-------------QSQNMDMHIYDRFQGFGFNG 172
+H +IR GV+ +L N+L+ MYA Q DM ++ FN
Sbjct: 275 LHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNS 334
Query: 173 GREASVHEVLDKIPERNGNVELSSGLAGC 201
+ EV++ + V S L+ C
Sbjct: 335 AEALTYFEVMESLGVSPDGVTFVSLLSTC 363
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 54/242 (22%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++K SI + Q KQ H I K + + + L+ +Y + D+ + D +
Sbjct: 12 TLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKM 71
Query: 66 KTPAPP------------------------------VAWKSIIRCCTQNGLLVESLTCFV 95
+ V+W ++I QNG ESL F
Sbjct: 72 SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFN 131
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
+M +G+ D + SVL +C L G HA +++ G LD+ +AL++MYA+S
Sbjct: 132 QMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSG 191
Query: 156 NMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRVVSAGHDA 215
+M+ +V DK+P+RN V +S + GC + + G+DA
Sbjct: 192 SME------------------DACQVFDKMPQRN-EVSWNSIITGCAQHGR-----GNDA 227
Query: 216 DL 217
L
Sbjct: 228 VL 229
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M+G GV P+ +V+K+C + G+ H II++G + D+ AL++MYA+ +
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 157 MD--MHIYDRF 165
++ H++D+
Sbjct: 61 LEDAGHVFDKM 71
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCC 81
+Q HA + ++ + S L+ +Y + D+ + D K P V+W SII C
Sbjct: 161 GRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFD--KMPQRNEVSWNSIITGC 218
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+G +++ F +M+ +G+ P+ F VL +C+
Sbjct: 219 AQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACS 254
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 26 LHAQIFKTLEP--NSRFLI-------SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
L +IFKT N FL+ +R L Y + ++L L + ++ W
Sbjct: 38 LKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQ-CDTFIWNV 96
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR NGL +++ + RM GV D+ +P V+K+C L D GE VH +I+ G
Sbjct: 97 MIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSG 156
Query: 137 VDLDLYTNNALMNMYAQ 153
+DLD+Y N+L+ MYA+
Sbjct: 157 LDLDIYIGNSLIIMYAK 173
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++ +++H ++ K+ ++ + L+ +Y + + + + V+W S+I
Sbjct: 143 AEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPV-RDLVSWNSMISG 201
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
G SL+CF M SG+ D +L +C+L R G+ +H ++R ++LD
Sbjct: 202 YVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELD 261
Query: 141 LYTNNALMNMYAQSQNMD 158
+ +L++MYA+ MD
Sbjct: 262 VMVQTSLVDMYAKCGRMD 279
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+INLL ++ K +H + L + L+ +Y + + CL +
Sbjct: 331 TMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQM 390
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I T+NG +++T F + + PD S+L + L R
Sbjct: 391 -NERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREA 449
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR 164
E +H + +L +D + + +N+++ MY + N+ I+DR
Sbjct: 450 EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDR 490
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++H Q+ ++ + + L+ +Y + + L D + T VAW ++I +
Sbjct: 246 GKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQI-TDKSIVAWNAMIGGYS 304
Query: 83 QNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
N ES +VR + G ++PD ++L C L G+SVH IR G
Sbjct: 305 LNAQSFESFA-YVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPH 363
Query: 141 LYTNNALMNMYAQ 153
L AL++MY +
Sbjct: 364 LVLETALVDMYGE 376
>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
Length = 1359
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + KT + + F+ S L+ +Y+ L +L + +++ P VAW S+I C ++N
Sbjct: 996 QVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMR-PENIVAWNSMISCYSRN 1054
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L S+ F M+ G++PD SVL + + G+S+H +RLG+ D +
Sbjct: 1055 NLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLK 1114
Query: 145 NALMNMYAQS--QNMDMHIYDRFQ------------GFGFNGG-REA-SVHEVLDKIPER 188
NAL++MY + +I+ + Q G+G +G R A S+ + L K E
Sbjct: 1115 NALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGET 1174
Query: 189 NGNVELSSGLAGCN 202
+V S ++ CN
Sbjct: 1175 PDDVTFLSLISACN 1188
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K +HA++FK ++ + S LL +Y+ D+ + +++ VAW S+I
Sbjct: 891 GKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEE-KDMVAWGSLISGLC 949
Query: 83 QNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+NG E+L F M + PD ++ SV+ +C L FG VH +I+ G L+
Sbjct: 950 KNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLN 1009
Query: 141 LYTNNALMNMYAQ 153
++ ++L+++Y++
Sbjct: 1010 VFVGSSLIDLYSK 1022
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVH 129
P + S IR Q G +++L + + GS ++ FPS+LK+C+ L + G+++H
Sbjct: 525 PASVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIH 584
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNG--GREASV 178
II LG D + +L+NMY + +D + F G+ +G R+ +V
Sbjct: 585 GSIIVLGWRYDPFIATSLVNMYVKCGFLDYAV-QVFDGWSQSGVSARDVTV 634
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ KQ+H + + FL + L+ +Y F L D+ + ++ + V W +I
Sbjct: 685 REDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIV 744
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ + SL ++ + V F L +C+ + FG +H ++++G+D
Sbjct: 745 GFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDN 804
Query: 140 DLYTNNALMNMYAQ 153
D Y + +L++MY++
Sbjct: 805 DPYVSTSLLSMYSK 818
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N ++ + LL +Y+ +V ++ + + + W +++
Sbjct: 790 GRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEI-WNAMVAAYV 848
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+N +L F M V PD +V+ C++ + +G+SVHA + + +
Sbjct: 849 ENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPA 908
Query: 143 TNNALMNMYAQ 153
+AL+ +Y++
Sbjct: 909 IESALLTLYSK 919
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + + +H+ + F+ L+ +Y+ L D+L + +
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V+W +II C Q G E+ F RM SGV P+ S++ + T L D +G
Sbjct: 392 EDP-DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG 450
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
ES+HAC+ + G + D NAL+ MY +
Sbjct: 451 ESIHACVCKYGFEYDNTVCNALVTMYMK 478
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I++L++ S+ KQ+HAQI K + F+ + L+ +Y + D+ + + L
Sbjct: 534 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 593
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
AW I+ Q+G +++ CF++M GV P+ S L C+ + G
Sbjct: 594 -IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 652
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ I+ G D++ +AL++MYA+
Sbjct: 653 RQLHSMAIKAGQSGDMFVASALVDMYAK 680
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+ S ++ K +H Q+ K+ + P+S L + L+ +Y + + + +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSH-LWNSLVNVYAKCGSANYACKVFGEIP-E 191
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I G ++ F M GV + + + LK+C++ +D FG+ V
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNM 157
HA I++G DL+ +AL+++YA+ M
Sbjct: 252 HAEAIKVGDFSDLFVGSALVDLYAKCGEM 280
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L+ + + +HA + K + + L+ +Y V D C +
Sbjct: 433 TLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDG-CRVFEA 491
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W +++ N L F +M+ G P+ F S+L+SC+ L D G
Sbjct: 492 TTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 551
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF------------QGFGFN 171
+ VHA I++ +D + + AL++MYA+++ ++ I++R G+ +
Sbjct: 552 KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQD 611
Query: 172 GGREASVHEVLDKIPE--RNGNVELSSGLAGCNK 203
G E +V + E + L+S L+GC++
Sbjct: 612 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQ+HA+ K + + F+ S L+ +Y +V L K A V+W +++
Sbjct: 248 GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNA--VSWNALLNGF 305
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G + L F RM GS + +VLK C + R G+ VH+ IR+G +LD
Sbjct: 306 AQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDE 365
Query: 142 YTNNALMNMYAQ 153
+ + L++MY++
Sbjct: 366 FISCCLVDMYSK 377
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L I T +QLH+ K + F+ S L+ +Y V D+ + D L
Sbjct: 635 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 694
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W +II +Q+G ++L F M+ G PD F VL +C+
Sbjct: 695 -VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 745
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+HA+I K + ++ ++L+ Y + S L L+ +W +II
Sbjct: 87 GKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVR-NVYSWAAIIGV 145
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL E+L FV M+ + ++PD+ V P+V K+C L RFG VH +++ G+
Sbjct: 146 KCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDC 205
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + +D +V D+IPERN
Sbjct: 206 VFVASSLADMYGKCGVLD------------------DARKVFDEIPERN 236
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QNG E++ +M SG+ P+ L +C+ L FG SVH
Sbjct: 510 VSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGY 569
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNM-------------DMHIYDRF-QGFGFNGGREA 176
IIR + +L++MYA+ ++ D+ +Y+ + NG +
Sbjct: 570 IIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKE 629
Query: 177 SVH--EVLDKIPERNGNVELSSGLAGCN 202
++ L+ + N+ +S L+ CN
Sbjct: 630 AIALCRRLEDTGIKPDNITFTSLLSACN 657
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K+ + F+ S L +Y ++ D+ + D +
Sbjct: 176 NVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIP-E 234
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M G+ P + L + + G+
Sbjct: 235 RNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQS 294
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
HA I G++LD + +N Y + ++ I+DR
Sbjct: 295 HAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRM 333
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +++ ++ +QLH+ K F+ L+ +Y+ + D+ C+ D
Sbjct: 234 RTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDE 293
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V W SII +G E+L + M SGV DH F +++ C+ L
Sbjct: 294 MPDKTI-VGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVAR 352
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGF 170
+ VHA ++R G LD+ N AL++ Y++ +D H++DR G+G
Sbjct: 353 AKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGN 412
Query: 171 NGGREASV 178
+G E ++
Sbjct: 413 HGHGEEAI 420
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++AKQ+HA + + + L+ Y+ + V D+ + D + + ++W ++I
Sbjct: 351 ARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRM-SCRNIISWNALIAG 409
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+G E++ F +M+ G+ P+H F +VL +C++ F G + + R
Sbjct: 410 YGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTR 463
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + + + K LHA ++ FL L+ +Y+ V+D+L + +
Sbjct: 53 TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P VAW ++I Q G E+ F M G P+ S++ + T + D R+G
Sbjct: 113 RNP-DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
+S+H CI + G + D +N L+ MY +S+
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSR 201
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L+ ++ + +H I K + + + L+ +Y V D + + +
Sbjct: 154 TLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM 213
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V+W +++ + F +M+ G P+ F SVL+SC+ L+D FG
Sbjct: 214 TNP-DLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFG 272
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VHA II+ D D + AL++MYA+++ ++
Sbjct: 273 KQVHAHIIKNSSDDDDFVGTALVDMYAKARCLE 305
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I++L++ S+ KQ+HA I K + F+ + L+ +Y + D+ D L
Sbjct: 255 TFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRL 314
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+W II Q +++ F +M G+ P+ S L C+ + G
Sbjct: 315 -VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG 373
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
+HA ++ G D++ +AL+++Y + M+ H F+G
Sbjct: 374 RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCME-HAEAIFKGL 415
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L + T +QLHA K F+ S L+ +Y + + + L
Sbjct: 356 TLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
V+W +II +Q+G ++L F M+ G+ PD F VL +C+ +
Sbjct: 416 -ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFM 468
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L + S+K A +H I KT + + + L+ +Y + D ++ +
Sbjct: 43 TLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKL-DCAIMVFSK 101
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S++ + NG E++ F +M SGVYPD SVL +C L FG
Sbjct: 102 MVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFG 161
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA +++ G++ L +N+L+ MYA+
Sbjct: 162 QQIHATLVKSGLESSLSVDNSLVTMYAK 189
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C + G ++L+ F +M + D PSVL S + + SVH
Sbjct: 7 VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
II+ G + NNAL++MYA+ +D I
Sbjct: 67 IIKTGFEAYKLVNNALIDMYAKQGKLDCAI 96
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + K+ +S + + L+ +Y + D+ D + T ++W ++I
Sbjct: 161 GQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPT-RDVISWTALIVGYA 219
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
QNG SL + +MI +G PD+ F +L +C+
Sbjct: 220 QNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACS 254
>gi|255550217|ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544645|gb|EEF46161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1439
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL K S+ Q KQ+HA K + FL S +L +Y + D L D +
Sbjct: 1193 TLATAAKACGSLVRLEQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNI 1252
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P VAW +I C +NG +L+ + +M SG+ PD F +++K+ + L G
Sbjct: 1253 PVP-DDVAWTIMISGCVENGDEDRALSVYRQMRLSGILPDEYTFATLIKASSCLTALEQG 1311
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA +I+L D + +L++MYA+
Sbjct: 1312 RQIHANVIKLECASDPFVGTSLIDMYAK 1339
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF-GESVHA 130
++W S+I C QNGL ES+ V ++ G+ PDH SVLK+C+ L + F + +H
Sbjct: 1055 ISWNSMISCYAQNGLQKESVNLLVGLLRDGLQPDHFTLASVLKACSSLTEGLFLSKQIHV 1114
Query: 131 CIIRLGVDLDLYTNNALMNMYAQS 154
+ + + + + + AL+++Y++S
Sbjct: 1115 YVTKTSIIAENFVSTALIDVYSRS 1138
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+KQ+H + KT F+ + L+ +Y+ L+ ++ + + K AW +++
Sbjct: 1109 SKQIHVYVTKTSIIAENFVSTALIDVYSRSGLMAEAEFIFEN-KNKFDLAAWNAMMFGYI 1167
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G + L F M G D + K+C LV G+ +HA I+ G++ DL+
Sbjct: 1168 ICGDHDKGLKLFAFMHEKGESCDEYTLATAAKACGSLVRLEQGKQIHALAIKFGLNSDLF 1227
Query: 143 TNNALMNMYAQSQNMD 158
++ +++MY + NM+
Sbjct: 1228 LSSGILDMYIKCGNME 1243
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q +Q+HA + K + F+ + L+ +Y ++ D+ CL +
Sbjct: 1294 TFATLIKASSCLTALEQGRQIHANVIKLECASDPFVGTSLIDMYAKCGIIEDAYCLFRRM 1353
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W +++ Q+G E+L F M + PD F VL +C+
Sbjct: 1354 DV-RNIVVWNAMLVSLAQHGHGEEALHLFKVMQSHSIKPDKVTFIGVLSACS 1404
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL+ VS K +HA I + + RFL + L+ +Y+ V + L D +TP
Sbjct: 709 SLLRAAVSTSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSSARQLFD--RTP 766
Query: 69 APP-VAWKSIIRCCTQNGL-----LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
V W +++ ++ +VE F + V +LK C L
Sbjct: 767 DRDLVTWNAVLSAYARSDESEYDHVVEGFHIFRLLRERFVSTSKLTLAPMLKLCLLSGYV 826
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
++VH +++G++LD++ + AL+N+Y++
Sbjct: 827 CASQAVHGYAVKIGLELDVFVSGALVNIYSK 857
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W + Q G ++ CF+ M+ S V D+ VL + T D G+ +H
Sbjct: 953 VMWNKKLSEYLQAGAFWAAVDCFINMLTSSHVKYDNVTLVVVLAAATGTGDLMLGKLIHG 1012
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++ G D + N+L+NMY++
Sbjct: 1013 MTLKSGFDSVVSVANSLINMYSK 1035
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ L+ IY+ F LV ++ L D ++ V W +++ + GL+ E+L+ F +
Sbjct: 846 FVSGALVNIYSKFGLVREARGLFDIMQE-RDVVLWNVMLKAYVEMGLVKEALSFFSQFHQ 904
Query: 100 SGVYPD 105
SG+ PD
Sbjct: 905 SGLRPD 910
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 21 SQAKQLHAQIFKTLEPN--SRFLISRLLFIYNNFNLVHDSLC-LLDTLKTPAPPVAWKSI 77
S+ KQ+HAQ + + S FL SR+L + + + D C + + + P W ++
Sbjct: 39 SKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDF--DYACRVFNQIDNP-NSFMWNTL 95
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
I C ++ +++ F RM+ G V PD + FP +LK+C + G HA I +L
Sbjct: 96 IGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKL 155
Query: 136 GVDLDLYTNNALMNMYAQSQNMDM 159
G+DLD+Y N+L+++YA + M
Sbjct: 156 GLDLDVYVGNSLIHLYASCGCLSM 179
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK + S+ +Q HAQIFK ++ + L+ +Y + + +L + + + +
Sbjct: 132 LLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRS 191
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W +I Q+GL +L FV M S PD S++ +C + G H
Sbjct: 192 -LVSWNVMIDAYVQSGLFENALKLFVEMQNS-FEPDGYTMQSIVSACAGIGALSLGMWAH 249
Query: 130 ACIIRLGVDL---DLYTNNALMNMYAQSQNMDM 159
A ++R D+ N++L++MY++ ++ M
Sbjct: 250 AYVLRKASGAMAGDVLINSSLVDMYSKCGSLRM 282
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 16/188 (8%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T +++ + KQ+H+ K + F+ L+ +Y+ + D+ C+ D
Sbjct: 219 SRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFD 278
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ V W SII +G E+L+ + M SG DH V++ C L
Sbjct: 279 QMPEKTT-VGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLE 337
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFG 169
+ HA ++R G D+ N AL++ Y++ M+ H+++R + G+G
Sbjct: 338 HAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYG 397
Query: 170 FNG-GREA 176
+G G+EA
Sbjct: 398 NHGQGQEA 405
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL--FIYNNFNLVHDS 58
M T+++LL K+ + K+LH I T S +S+L+ + + F ++ +
Sbjct: 1 MIHQNTILSLL---AKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYA 57
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+L + P+ + W S+IR + S+ + +MI +G PDH FP VLK+C +
Sbjct: 58 DLVLRQIHNPSVYI-WNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ D G+ +H+CI++ G + D YT L++MY +M
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADM 155
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I Q E+L F M SGVYPD F SVL C G++VHA
Sbjct: 279 VSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAY 338
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+++ G+ D+ AL++MYA++
Sbjct: 339 LLKTGIATDISLATALLDMYAKT 361
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I + K +H+ I K+ + + LL +Y + + L + D +
Sbjct: 110 VLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIP-KW 168
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
VAW +I +N E+L F M V P+ + L +C D G VH
Sbjct: 169 NVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVH 228
Query: 130 ACIIRLGVDLDLYTNN-------ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
I + G D + T+N A++ MYA+ GR ++
Sbjct: 229 QRIRKAGYDPFMSTSNSNIILATAILEMYAKC------------------GRLKIARDLF 270
Query: 183 DKIPERNGNVELSSGLAGCNKFEK 206
+K+P+RN V +S + N++E+
Sbjct: 271 NKMPQRN-IVSWNSMINAYNQYER 293
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + KT + +L +RLL Y + + D+ +LD + V+W ++I
Sbjct: 69 EGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV-VSWTAMISRY 127
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q G E+L+ F M+ S P+ F +VL SC G+ +H I++ D +
Sbjct: 128 SQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHI 187
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MYA++ G+ E+ + +PER+
Sbjct: 188 FVGSSLLDMYAKA------------------GQIEEAREIFECLPERD 217
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L + + + KQ+H I K + F+ S LL +Y + ++ + + L
Sbjct: 154 TFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECL 213
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F R+ G+ P++ + S+L + + L G
Sbjct: 214 -PERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHG 272
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ H ++R + N+L++MY++ N+
Sbjct: 273 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 304
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL++ V K KQLHA+I + + L ++L+ +Y N + ++ L D + +
Sbjct: 6 SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRI-SK 64
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
W +IR NG +++ + +M G+ PD FP VLK+C+ L G+ +
Sbjct: 65 RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H +IR G++ D++ AL++MYA+ G S +V DKI ER
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKC------------------GCVESARQVFDKIDER 166
Query: 189 N 189
+
Sbjct: 167 D 167
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ + K++H + ++ + F+ + L+ +Y V + + D +
Sbjct: 108 VLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKID-ER 166
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W S++ +QNG ESL M +G+ P F + + G+ +H
Sbjct: 167 DVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELH 226
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
R G + + ALM+MYA+S ++++
Sbjct: 227 GYSWRHGFESNDKVKTALMDMYAKSGSVNV 256
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ S+ + KQ+H K + F+ S L +Y+ + D+ + + +
Sbjct: 48 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-D 106
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I ++ G E+L F +MI V D +V S L +C L +FG SVH+
Sbjct: 107 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 166
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++LG + D++ NAL +MY+++ +M+
Sbjct: 167 SVVKLGFESDIFVGNALTDMYSKAGDME 194
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+K + Q QLHAQ+ K F+ S L+ +Y L+ ++ D +
Sbjct: 246 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 305
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P +AW S++ Q+GL +++ F RM+ GV P+ F S+L C+
Sbjct: 306 GDPTE-IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS-------- 356
Query: 126 ESVHACIIRLGVD 138
HA ++ G+D
Sbjct: 357 ---HAGLVEEGLD 366
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +QN E++ F M G P F S +++C L G+ +H
Sbjct: 7 VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G+ +L+ + L +MY++ M
Sbjct: 67 ALKFGIGSELFVGSNLEDMYSKCGAM 92
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +I + + + L+ FV + G+ P+ F S++K+C G +HA
Sbjct: 210 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 269
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++++ D D + ++ L++MY +
Sbjct: 270 VMKINFDEDPFVSSILVDMYGK 291
>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T + +LL+ +++ ++H I L N+ + S+L+ +Y + +
Sbjct: 320 ITEPEIFASLLETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLYASCGYAEVAHE 379
Query: 61 LLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + K + P AW S+I + G +++ + +M GV PD FP VLK+C +
Sbjct: 380 VFDRMSKRESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGI 439
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ GE++H +++ G D++ NAL++MYA+
Sbjct: 440 GSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAK 473
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ +GLL E+L F M+ +G+ PD SVL ++ F+ G +H
Sbjct: 493 VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVLAR---VLSFKHGRQLHGW 549
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR G++ +L NAL+ +Y++
Sbjct: 550 VIRRGMEWELSVANALIVLYSK 571
>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Glycine max]
Length = 676
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
+ LL +Y+ N++ DS+ + + L A V W S + QNG +++ F MI +
Sbjct: 242 TSLLTMYSRCNMIEDSIKVFNQLDY-ANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSI 300
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
P+ S+L++C+ L GE +HA ++LG+D + Y AL+N+Y + NMD
Sbjct: 301 SPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMD 356
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+ K+ + + +H + K+ S FL +L+ Y + ++ L D L +
Sbjct: 6 SLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELPSR 64
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W S+I +G E++ + M+ GV PD F ++ K+ + L R G+
Sbjct: 65 -HIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRA 123
Query: 129 HACIIRLGVD-LDLYTNNALMNMYAQSQNM-DMHIYDR 164
H + LG++ LD + +AL++MYA+ M D H+ R
Sbjct: 124 HGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFR 161
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
LE F+ S L+ +Y F+ + D+ + + V + ++I Q+GL E+L
Sbjct: 132 LEVLDGFVASALVDMYAKFDKMRDAHLVFRRV-LEKDVVLFTALIVGYAQHGLDGEALKI 190
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F M+ GV P+ +L +C L D G+ +H +++ G++ + + +L+ MY++
Sbjct: 191 FEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSR 250
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ S+ +Q+HA K +++ + L+ +Y + + + D L
Sbjct: 306 TLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVL 365
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
T VA S+I QNG E+L F R+ G+ P+ F S+L +C
Sbjct: 366 -TELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLAC 415
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 18 KTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
+ S+ +QLHA T + ++ FL ++LLF+Y + D+ L D + PA V +
Sbjct: 69 RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGM--PARTVFS 126
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W ++I C +G E++ + M S G PD SVLK+C D R G VH
Sbjct: 127 WNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVH 186
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ G+D NAL+ MYA+ +D
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLD 215
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + ++H K+ S + + L+ +Y L+ +L + + +
Sbjct: 165 TLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWM 224
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +W S I C QNG+ +E+L F RM G + VL+ C L G
Sbjct: 225 RDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG 284
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA +++ G + ++ NAL+ MYA+ +D
Sbjct: 285 RELHAALLKCGTEFNIQC-NALLVMYARCGWVD 316
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLI--SRLLFIYNNFNLVHDSLCLLD 63
T + +L+ + + ++LHA + K + F I + LL +Y V +L +
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKC---GTEFNIQCNALLVMYARCGWVDSALRVFR 323
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ ++W S++ C QN L E++ F M+ +G PDH S+L + L
Sbjct: 324 EIGDK-DYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLI 382
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
G VHA ++ +D DL N LM+MY + +++ ++DR +
Sbjct: 383 NGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ +K+ S KQ+H+ + + L +R++ IY V +L + + L
Sbjct: 471 SILEACSGLKSISLLKQVHSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKK 529
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W S++ C +NGLL E++ F +M+ +G+ PD +L + L G+ +
Sbjct: 530 -DIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEI 588
Query: 129 HACIIRLGVDLDLYTNNALMNMYA--QSQNMDMHIYD 163
H +IR ++ ++L++MY+ S N + ++D
Sbjct: 589 HGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFD 625
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L+ +L + + ++ K++H + + P ++S L+ +Y+ ++ +L + D
Sbjct: 568 ALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEA 627
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K V W ++I +G +++ F RM+ +GV PDH F ++L +C+
Sbjct: 628 KCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HA K + + + L+ +Y V S + D ++ V+W +II C
Sbjct: 384 GREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK-DHVSWTTIIACYA 442
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ E++ F G+ D + S+L++C+ L + VH+ IR G+ LDL
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLI 501
Query: 143 TNNALMNMYAQ 153
N ++++Y +
Sbjct: 502 LKNRIIDIYGE 512
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + K+ ++ S L+ IY+ V + + D + V+W S+I C QN
Sbjct: 172 QIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGM-MERNVVSWNSLITCYEQN 230
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDLYT 143
G E+L F+RM+ SG PD SV+ +C L + G +HAC++ R + DL
Sbjct: 231 GPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLIL 290
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELS--SGLA 199
+NAL++MYA+ GR V D++P RN E S SG A
Sbjct: 291 SNALVDMYAKC------------------GRINEARCVFDRMPIRNVVSETSMVSGYA 330
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 30/180 (16%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--- 65
LL + + K+ +++HA+I KT F+ +RL+ Y D+ + D +
Sbjct: 24 KLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEK 83
Query: 66 --------------------------KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMI 98
P P +W S+I Q+ E+L FV+M
Sbjct: 84 NVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMH 143
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G + F S L +C L D + G +H +++ LD+Y +AL+++Y++ +D
Sbjct: 144 RKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVD 203
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDT 64
TL +++ S+ Q ++HA + K + ++S L +Y ++++ C+ D
Sbjct: 254 TLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDR 313
Query: 65 L----------------KTPAPP--------------VAWKSIIRCCTQNGLLVESLTCF 94
+ KT + V+W ++I TQNG E+L F
Sbjct: 314 MPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLF 373
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR------LGVDLDLYTNNALM 148
+ + P H F ++L +C L D + G HA +++ G + D++ NAL+
Sbjct: 374 RMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALI 433
Query: 149 NMYAQSQNMD 158
+MY + +++
Sbjct: 434 DMYMKCGSVE 443
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T NLL ++ +Q HA + F+ E + F+ + L+ +Y V +
Sbjct: 387 TFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGC 446
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + + V+W ++I QNG +E+L F +M+ SG PDH L +C+
Sbjct: 447 RIFENM-VERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACS 503
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL-------------FIYNNFNLVHDSLCLLDT 64
KT +Q KQLH QI K +++L+ + F L + + D
Sbjct: 36 KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDA 95
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L S+IR + GL E++ +VRM+ GV P+H FP VL CT + F
Sbjct: 96 L------FMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE 149
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
G VH ++++G++ D++ N L++ YA+ +MD H + F+G
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMD-HGHKVFEGM 192
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES---- 127
V + +I+ + GL E+L M+ G PD S + + LVD +G+
Sbjct: 258 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 317
Query: 128 -VHACIIRLGVDLDLYTNNALMNMYAQ 153
VH I + G+ D+ N AL++M+A+
Sbjct: 318 WVHTYIEKNGIPCDMRLNTALVDMFAR 344
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HAQ+ FL SRLL +Y V D+ + D + + +W +I+
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM-SERNVFSWTAIMEMYCGL 168
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F M+ GV PDH VFP V K+C+ L ++R G+ V+ ++ +G + +
Sbjct: 169 GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 228
Query: 145 NALMNMYAQSQNMDM 159
++++M+ + MD+
Sbjct: 229 GSILDMFIKCGRMDI 243
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA- 130
V+W ++I QNG E+L+ F +M+ GV P+ S + +CT L R G +H
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
CI +D DL N+L++ YA+ +++++
Sbjct: 388 CIKVEELDSDLLVGNSLVDYYAKCRSVEV 416
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+ L ++ K++H + + S + S L+ +Y+ + + + +
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS 558
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
L T V W SII C Q+G V +L M S V + S L +C+ L R
Sbjct: 559 ELST-RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H IIR G+D + N+L++MY +
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGR 647
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++ TQ G +L F RM G+ P+ L +C + + + G+ +H
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
++R ++L +AL++MY+ ++++
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEV 552
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+++ L + Q K++H I + F+++ L+ +Y + S + D
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L V+W +I +G ++++ F + G+ P+H F ++L +C+
Sbjct: 660 -LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 712
>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
gi|219885333|gb|ACL53041.1| unknown [Zea mays]
gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
Length = 528
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVY--PDHNVFPSVLKSCTLLVDFRFGESVHA 130
AW ++I C QNG E+L F RM+ ++ P+ F SV+ +C+ L D RFG V
Sbjct: 247 AWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVEN 306
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
+ +GVDLD + AL+++Y +S MD +D F+G
Sbjct: 307 FMGYVGVDLDDHLRTALVDLYTKSGRMD-RAFDLFRGL 343
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HAQ+ FL SRLL +Y V D+ + D + + +W +I+
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM-SERNVFSWTAIMEMYCGL 168
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F M+ GV PDH VFP V K+C+ L ++R G+ V+ ++ +G + +
Sbjct: 169 GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 228
Query: 145 NALMNMYAQSQNMDM 159
++++M+ + MD+
Sbjct: 229 GSILDMFIKCGRMDI 243
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA- 130
V+W ++I QNG E+L+ F +M+ GV P+ S + +CT L R G +H
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
CI +D DL N+L++ YA+ +++++
Sbjct: 388 CIKVEELDSDLLVGNSLVDYYAKCRSVEV 416
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+ L ++ K++H + + S + S L+ +Y+ + + + +
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS 558
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
L T V W SII C Q+G V +L M S V + S L +C+ L R
Sbjct: 559 ELST-RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H IIR G+D + N+L++MY +
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGR 647
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++ TQ G +L F RM G+ P+ L +C + + + G+ +H
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
++R ++L +AL++MY+ ++++
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEV 552
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+++ L + Q K++H I + F+++ L+ +Y + S + D
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L V+W +I +G ++++ F G+ P+H F ++L +C+
Sbjct: 660 -LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACS 712
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL-------------FIYNNFNLVHDSLCLLDT 64
KT +Q KQLH QI K +++L+ + F L + + D
Sbjct: 36 KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDA 95
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L S+IR + GL E++ +VRM+ GV P+H FP VL CT + F
Sbjct: 96 L------FMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE 149
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
G VH ++++G++ D++ N L++ YA+ +MD H + F+G
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMD-HGHKVFEGM 192
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + +I+ + GL E+L M+ G PD S + + LVD +G+ H
Sbjct: 299 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 358
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGGREAS 177
+IR G++ N +++MY + +M ++D GF NG E S
Sbjct: 359 VIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVE-S 417
Query: 178 VHEVLDKIPERNG 190
EV ++IPERN
Sbjct: 418 AWEVFNQIPERNA 430
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + E+++ F M+ +G+ P V+ +C L D GE V A
Sbjct: 198 VSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAY 257
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I LG+ L+ NAL++MY + +D
Sbjct: 258 IGELGLKLNKVMVNALVDMYMKCGAID 284
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I Q L +++ F M G G+ D + +C L + VH
Sbjct: 431 VFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTY 490
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I + G+ D+ N AL++M+A+
Sbjct: 491 IEKNGIPCDMRLNTALVDMFAR 512
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ S+ + KQ+H K + F+ S L +Y+ + D+ + + +
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-D 171
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I ++ G E+L F +MI V D +V S L +C L +FG SVH+
Sbjct: 172 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 231
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++LG + D++ NAL +MY+++ +M+
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDME 259
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ T L ++++ K + KQLHA + FL + L+ +Y+ + +L
Sbjct: 2 LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALK 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L DT+ V+W ++I +QN E++ F M G P F S +++C L
Sbjct: 62 LFDTM-PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H ++ G+ +L+ + L +MY++ M
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM 157
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+K + Q QLHAQ+ K F+ S L+ +Y L+ ++ D +
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEI 370
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P +AW S++ Q+GL +++ F RM+ GV P+ F S+L C+
Sbjct: 371 GDPTE-IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCS-------- 421
Query: 126 ESVHACIIRLGVD 138
HA ++ G+D
Sbjct: 422 ---HAGLVEEGLD 431
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +I + + + L+ FV + G+ P+ F S++K+C G +HA
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++++ D D + ++ L++MY +
Sbjct: 335 VMKINFDEDPFVSSILVDMYGK 356
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ S+ + KQ+H K + F+ S L +Y+ + D+ + + +
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-D 171
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I ++ G E+L F +MI V D +V S L +C L +FG SVH+
Sbjct: 172 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 231
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++LG + D++ NAL +MY+++ +M+
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDME 259
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ T L ++++ K + KQLHA + FL + L+ +Y+ + +L
Sbjct: 2 LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALK 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L DT+ V+W ++I +QN E++ F M G P F S +++C L
Sbjct: 62 LFDTMPQ-RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H ++ G+ +L+ + L +MY++ M
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM 157
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+K + Q QLHAQ+ K F+ S L+ +Y L+ ++ D +
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 370
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P +AW S++ Q+GL +++ F RM+ GV P+ F S+L C+
Sbjct: 371 GDPTE-IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS-------- 421
Query: 126 ESVHACIIRLGVD 138
HA ++ G+D
Sbjct: 422 ---HAGLVEEGLD 431
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +I + + + L+ FV + G+ P+ F S++K+C G +HA
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++++ D D + ++ L++MY +
Sbjct: 335 VMKINFDEDPFVSSILVDMYGK 356
>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 793
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDT 64
T +++K I+ KQ+HA I K + F+ S L+ +Y+ D L C T
Sbjct: 321 TFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNST 380
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K V+W ++I QNG +L F ++ SG PD + ++L +C + R
Sbjct: 381 PKLDI--VSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERS 438
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE VH ++ G+ N+ ++MYA+S N+D
Sbjct: 439 GEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLD 472
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVH 129
V+W S+I + G E L V+M +G+ + S LKSC L ++ +G+++H
Sbjct: 177 VSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLH 236
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQS 154
++ G+DLD+ AL++MYA++
Sbjct: 237 GYTVKQGLDLDIVVGTALLDMYAKT 261
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F +M G+ P F S++K C + F +G+ +HA I + + D + + L+
Sbjct: 302 EALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLI 361
Query: 149 NMYA 152
+Y+
Sbjct: 362 ELYS 365
>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
Length = 564
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + N F+ S L +Y+ L+H++ + D + V W ++I +N
Sbjct: 140 QLHCIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQK-DAVTWTTMIDGYAKN 198
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G L ++ F M G V D +VF S L + L D FG S+H CII+ G +L+
Sbjct: 199 GSLEAAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVV 258
Query: 144 NNALMNMYAQSQNMD 158
NAL++MYA+S +++
Sbjct: 259 RNALLDMYAKSGDLE 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT + F+ S L+++Y N L+ SL L + +
Sbjct: 325 TFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEI 384
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFR 123
+AW ++I Q+G ++ F RM SG+ P+H F +L +C+ LVD
Sbjct: 385 GYRTE-IAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEG 443
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H+ G++ + +++MY ++ +D
Sbjct: 444 LG-YFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLD 477
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP--VAWKSII 78
+ + LHA++ T S FL + L+ +Y++ D++ + P V+W +++
Sbjct: 35 RGRALHARLLLTGAAAASTFLANHLITMYSH---CADAVSAVRVFGVVPRPNLVSWTTLV 91
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
QN + ++L F M + + P S ++ L R G +H IRLG D
Sbjct: 92 SGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCIGIRLGFD 151
Query: 139 LDLYTNNALMNMYAQ 153
+L+ + L +MY++
Sbjct: 152 NELFVASNLADMYSK 166
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 71 PVAWK-----SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P W S+I + G + E+L + + GV P+ F S++K C + G
Sbjct: 283 PGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQG 342
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA 152
+HA +++ + D + + L+ MY
Sbjct: 343 AQLHAQVLKTNLISDSFVGSTLVYMYG 369
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSL 59
T+ K+ I L+N K+ Q KQ+ +QIF+ R I++L+ + +L + +
Sbjct: 95 TNKKSCIECLRN---CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAE 151
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ + ++ P+ V + +++ + G+L + L F ++ G++PD +P VLK+ L
Sbjct: 152 KIFNYVQDPSLFV-YNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCL 210
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D R GE V I++ G+DLD Y N+L++MY + N++
Sbjct: 211 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVE 249
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 18/195 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ Q +++ I KT ++ + L+ +Y + V ++ L D + T
Sbjct: 203 VLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEM-TTR 261
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W +I + +++ F M G PD S L +CT L + G+ +
Sbjct: 262 DSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 321
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRF------------QGFGFNGGR 174
H +R + +NAL++MYA+ N+ +I+D G+ N G
Sbjct: 322 HN-YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGY-INCGD 379
Query: 175 EASVHEVLDKIPERN 189
++ DK P R+
Sbjct: 380 LREARDLFDKSPVRD 394
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ LL + Q K +H + + + + L+ +Y+ V SL + L
Sbjct: 432 TVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL 491
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ +W SII NG E+L F M G PD F VL +C+
Sbjct: 492 EDK-DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACS 542
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKS 76
+T A Q+H+Q+ T + FL + LL +Y V +L L + + V+W S
Sbjct: 41 RTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTS 100
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I T+ ++LT F M SGVYP+H F +VL +CT GE +H+ + + G
Sbjct: 101 LITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHG 160
Query: 137 VDLDLYTNNALMNMYAQSQNMDM 159
+++ +AL++MYA+ +M M
Sbjct: 161 FLAEVFVVSALVDMYAKCCDMLM 183
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I QN L +++ F ++ + D F SV +C + FG+ VH
Sbjct: 197 VSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHG 256
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++LGV +Y NN+L +MY +
Sbjct: 257 VALKLGVWNLVYINNSLSDMYGK 279
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I N ++ F M G PD + SVL SC L G +H
Sbjct: 299 VTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQ 358
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
IIR G +L ++L+ MYA+ ++ D FQ F
Sbjct: 359 IIRSGFVKNLRVASSLITMYAKCGSL----VDAFQIF 391
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +H QI ++ + + S L+ +Y + D+ + + + V W +II C
Sbjct: 351 QGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETED-RNVVCWTAIIAAC 409
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+G + F +M+ G+ PD+ F SVL +C+
Sbjct: 410 QQHGHANWVVELFEQMLREGIKPDYITFVSVLSACS 445
>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
Length = 824
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+L+ V + +Q+HA+I K + +R ++ ++L+ Y + + + L L+
Sbjct: 68 ILQGCVYXRDLRTGQQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRV 127
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+W +II + GL+ +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 128 R-NVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRG 186
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH + + G+ ++ ++L +MY + +D +V D+IPE
Sbjct: 187 VHGYVAKAGLHDCVFVASSLADMYGKCGVLD------------------DARKVFDEIPE 228
Query: 188 RN 189
RN
Sbjct: 229 RN 230
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 170 NVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEI-PE 228
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M GV P + L + + G+
Sbjct: 229 RNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQS 288
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
HA I G++LD +++N Y + +D I+DR
Sbjct: 289 HAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRM 327
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L FG S+H
Sbjct: 504 ISWTTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGY 563
Query: 132 IIR 134
IIR
Sbjct: 564 IIR 566
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L L IK S+ QLH K+ ++ + + +L +Y + ++ L D +
Sbjct: 361 SLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEM 420
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ PV+W +II C QN ++L+ F M+ S + PD + SVLK+C F G
Sbjct: 421 EIR-DPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH II+ G+ L ++ +AL++MY++ M+
Sbjct: 480 MEVHGRIIKSGMGLKMFVGSALVDMYSKCGMME 512
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNG + +S+ F++M GV DH LK C+LL D G +H
Sbjct: 123 VSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGI 182
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+++G D D+ T +AL++MYA+ +++ + +V ++P++N
Sbjct: 183 AVQMGFDYDVVTGSALVDMYAKCNSLEDSL------------------DVFSELPDKNW- 223
Query: 192 VELSSGLAGC 201
+ S+ +AGC
Sbjct: 224 ISWSAAIAGC 233
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + S ++H +I K+ F+ S L+ +Y+ ++ ++ + L
Sbjct: 462 TYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL 521
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II + +S F M+ GV PD+ + +VL +C L G
Sbjct: 522 EEQTM-VSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLG 580
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +HA +I+L + D+Y + L++MY++ NM
Sbjct: 581 KQIHAQMIKLELLSDVYITSTLVDMYSKCGNM 612
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
S L+ +Y N + DSL + L ++W + I C QN L+ L F M G+
Sbjct: 196 SALVDMYAKCNSLEDSLDVFSELPDK-NWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGI 254
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ + SV +SC L R G +H ++ D+ A ++MYA+ NM
Sbjct: 255 GVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNM 309
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+HAQ+ K + ++ S L+ +Y+ +HDSL +
Sbjct: 563 TYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFR-- 620
Query: 66 KTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V W ++I +GL E+L F M+ + P+H F SVL++C+
Sbjct: 621 KAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACS 673
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+Q+HA+I S + + L+ +Y L+ + + D L T V+W ++I +
Sbjct: 131 AEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK-DSVSWVAMISGFS 189
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG E++ F M +G++P VF SVL CT + F GE +HA + + G L+ Y
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETY 249
Query: 143 TNNALMNMYAQSQN 156
NAL+ +Y++ N
Sbjct: 250 VCNALVTLYSRMPN 263
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S+ +Q+H Q+ KT + ++ S L+ +Y + + +L TL
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V+W ++I Q+ L E+L F M+ G+ D+ F S + +C + G
Sbjct: 477 -TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG 535
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA G DL NAL+++YA+
Sbjct: 536 RQIHAQSYVSGYSEDLSIGNALVSLYAR 563
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S + +QLH+ + K + + LL +Y N + + + + T
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+T V W ++ + L ES F +M G+ P+ +PS+L++CT + G
Sbjct: 376 QTE-NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLG 434
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
E +H +I+ G ++Y + L++MYA+ +D
Sbjct: 435 EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
I+ +Q +Q+HAQ + + + + L+ +Y + ++ + + ++W
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNG 587
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I Q+G ++L F +M + + F S + + + + + G+ +HA II+ G
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG 647
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D D+ +NAL+ YA+ +++
Sbjct: 648 FDSDIEVSNALITFYAKCGSIE 669
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L IK +QLHA +FK ++ + L+ +Y+ + + +++
Sbjct: 218 SVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSK 277
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V++ S+I Q G +L F +M + PD S+L +C GE +
Sbjct: 278 -DEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQL 336
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNM 157
H+ +I+ G+ D+ AL+++Y ++
Sbjct: 337 HSYVIKAGISSDMIVEGALLDLYVNCSDI 365
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I LL ++ + + K+LH +I K N L ++L+ +Y + + + +
Sbjct: 11 QTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFED 70
Query: 65 LKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-LLVDF 122
+ P V +W II + + L F MI V P F SVL++C+ +
Sbjct: 71 M--PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGI 128
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF------------QGF 168
R+ E +HA II G+ +N L+ +YA++ + ++D GF
Sbjct: 129 RYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF 188
Query: 169 GFNGGREASVH 179
NG E ++H
Sbjct: 189 SQNGYEEEAIH 199
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + + +I Q KQ+HA I K + + + L+ Y + D+ +
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDAR--REFC 676
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P V+W ++I +Q+G E++ F +M G P+H F VL +C+
Sbjct: 677 EMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACS 729
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T Q QLHA I T N ++L+ Y+ + S + T +P W ++
Sbjct: 13 TLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSP-DSFMWGVLL 71
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+ NG E+++ + +M+ + + FPSVL++C+ D G+ VH II+ G D
Sbjct: 72 KSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFD 131
Query: 139 LDLYTNNALMNMYAQSQNMD 158
+D N AL+++Y + +D
Sbjct: 132 MDPVVNTALLSVYGELGYLD 151
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK H I K N RF+ S L+F+Y + + + + + T W ++I
Sbjct: 219 AKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENV-TYRSTSTWTAMISSYN 277
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL- 141
G L E+L FV M + V P+ +L+SCT L R G+SVH +I+ +D +L
Sbjct: 278 LGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLD 337
Query: 142 YTNNALMNMYAQSQNMDM 159
L+ +YA + D+
Sbjct: 338 CLGPTLLELYAATAKHDL 355
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 25 QLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H + K P ++ + L+ +Y+ V + + D ++ P V W S+I +Q
Sbjct: 424 QIHGHVIK--RPFMDEYVFNSLINMYSKCGYVDLAYMIFDQME-PKGVVTWNSMISGLSQ 480
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NG ++++ F M + F SV+++C+ L G+ +H +I GV ++
Sbjct: 481 NGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFI 540
Query: 144 NNALMNMYAQSQNM 157
AL++MYA+ ++
Sbjct: 541 ETALVDMYAKCGDL 554
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NG + E L F M+ G PD + +V+++C L R +S H I++ G++ D +
Sbjct: 177 ENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRF 236
Query: 143 TNNALMNMYAQ 153
+++L+ MYA+
Sbjct: 237 VDSSLIFMYAK 247
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ +L++ ++ + K +H + K L+ N L LL +Y HD LC
Sbjct: 303 TMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAA-TAKHD-LCEKIL 360
Query: 65 LKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ +A W ++I Q GLL E++ FVRM G PD S L + + +
Sbjct: 361 HEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQ 420
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQGFG 169
G +H +I+ +D Y N+L+NMY++ +D+ I+D+ + G
Sbjct: 421 LGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKG 467
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HAQ K S F+ + L +YN + L L + + + V+W +II
Sbjct: 236 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVVSWTTIITTLV 294
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G ++ F+RM S V P+ F +V+ C L +GE +HA I+ LG+ L
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 354
Query: 143 TNNALMNMYAQ 153
N++M MYA+
Sbjct: 355 VENSIMTMYAK 365
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH KT NS F+ S LL +Y + + + + V+W +II + G
Sbjct: 138 LHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR-NVVSWTAIITGLVRAG 196
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L F M S V D F LK+C +G +HA ++ G D+ + N
Sbjct: 197 YNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN 256
Query: 146 ALMNMY 151
L MY
Sbjct: 257 TLATMY 262
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLHA I S + + ++ +Y + S + + T V+W +II +
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM-TRRDIVSWSTIIAGYS 395
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G + E+ M G P SVL +C + G+ +HA ++ +G++
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAM 455
Query: 143 TNNALMNMYAQSQNMD 158
+AL+NMY + +++
Sbjct: 456 VLSALINMYCKCGSIE 471
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 18/180 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQLHA + ++ ++S L+ +Y + ++ + D + V+W ++I
Sbjct: 437 HGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND-DIVSWTAMINGY 495
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++G E + F ++ G+ PD F VL +C+ HA + VDL
Sbjct: 496 AEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS-----------HAGL----VDLGF 540
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
NA+ Y S + + Y GR + +++ +P +V S+ L C
Sbjct: 541 RYFNAMSKKYQISPSKEH--YGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRAC 598
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LK VS +HA IFK ++ F+ + L+ Y+ V + + D +
Sbjct: 144 TILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGI-LY 202
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++ C +N E+L F +M G P++ F SV K+C L F G+SV
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H C ++ +LDLY AL+++Y +S ++D
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDID 292
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ K + ++ K +H K+ ++ LL +Y + D+ + +
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEI 301
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ E++ F +M + V P+ F SVL++C + G
Sbjct: 302 PKK-DVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H +I++G+ D++ +NALM++YA+ M+
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 393
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N L++ + S+ K LH +I K F + LL +Y + + D+ L D +
Sbjct: 43 NALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM-PE 101
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE-- 126
+++ ++I+ ++ +E++ FVR+ G + VF ++LK LLV GE
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILK---LLVSTDCGELG 158
Query: 127 -SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+HACI +LG + + + AL++ Y+ +D+
Sbjct: 159 WGIHACIFKLGHESNAFVGTALIDAYSVCGRVDV 192
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL-KT 67
+LL+ ++ ++H I +L S L S+LL +Y + + ++ L D + +
Sbjct: 84 SLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRR 143
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
AW S+I + GL +++ + +M GV PD FP VLK+C + GE
Sbjct: 144 NRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEE 203
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++R G D + NAL++MYA+
Sbjct: 204 VHRHVVRCGFADDGFVLNALVDMYAK 229
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + S +++H + + + F+++ L+ +Y + + + D +
Sbjct: 184 TFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKI 243
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S++ ++GL +++L+ F RM+ G PD +V+ T + +
Sbjct: 244 -VCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVV---TGVPSLKLA 299
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H ++R GV +L N+L+ +Y+ +D
Sbjct: 300 GQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLD 332
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HAQ K S F+ + L +YN + L L + + + V+W +II
Sbjct: 236 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVVSWTTIITTLV 294
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G ++ F+RM S V P+ F +V+ C L +GE +HA I+ LG+ L
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 354
Query: 143 TNNALMNMYAQ 153
N++M MYA+
Sbjct: 355 VENSIMTMYAK 365
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH KT NS F+ S LL +Y + + + + V+W +II + G
Sbjct: 138 LHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR-NVVSWTAIITGLVRAG 196
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L F M S V D F LK+C +G +HA ++ G D+ + N
Sbjct: 197 YNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN 256
Query: 146 ALMNMY 151
L MY
Sbjct: 257 TLATMY 262
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLHA I S + + ++ +Y + S + + T V+W +II
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM-TRRDIVSWSTIIAGYX 395
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G + E+ M G P SVL +C + G+ +HA ++ +G++
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAM 455
Query: 143 TNNALMNMYAQSQNMD 158
+AL+NMY + +++
Sbjct: 456 VLSALINMYCKCGSIE 471
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 18/180 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQLHA + ++ ++S L+ +Y + ++ + D + V+W ++I
Sbjct: 437 HGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND-DIVSWTAMINGY 495
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++G E + F ++ G+ PD F VL +C+ HA + VDL
Sbjct: 496 AEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS-----------HAGL----VDLGF 540
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+ NA+ Y S + + Y GR + +++ +P +V S+ L C
Sbjct: 541 HYFNAMSKKYQISPSKEH--YGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRAC 598
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 18 KTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K +Q Q+HA T LE + FL ++LLF+Y V D+ L D + + +W
Sbjct: 72 KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTV-FSWN 130
Query: 76 SIIRCCTQNGLLVESLTCFVRM---IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++I +G E+L + M SGV PD SVLK+ + D R G VH
Sbjct: 131 ALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLA 190
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD 163
++ G+D + NAL+ MYA+ +D M +++
Sbjct: 191 VKHGLDRSTFVANALIAMYAKCGILDSAMRVFE 223
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + + ++LHA + K+ + LL +Y V +L + +
Sbjct: 268 TTVGVLQVCTELAQLNLGRELHAALLKS-GSEVNIQCNALLVMYTKCGRVDSALRVFREI 326
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W S++ C QNGL E++ M+ G PDH S+ + L G
Sbjct: 327 DEK-DYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+ VHA I+ +D D N LM+MY + + ++ H++DR +
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMR 428
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ ++T AKQLH + + + +R++ IY V+ SL + +T++
Sbjct: 472 SILEACSGLETILLAKQLHCYAIRNGLLD-LVVKNRIIDIYGECGEVYHSLKMFETVEQK 530
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W S+I C +GLL E+L F M + V PD S+L + L G+ V
Sbjct: 531 -DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEV 589
Query: 129 HACIIRLGVDLDLYTNNALMNMYA 152
H +IR ++ ++L++MY+
Sbjct: 590 HGFLIRRNFHMEEAIVSSLVDMYS 613
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H K S F+ + L+ +Y ++ ++ + + + +W S+I C QN
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQN 244
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G+ +++L F M + + + VL+ CT L G +HA +++ G ++++
Sbjct: 245 GMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC- 303
Query: 145 NALMNMYAQSQNMD 158
NAL+ MY + +D
Sbjct: 304 NALLVMYTKCGRVD 317
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++HA K + + + L+ +Y + S + D ++ ++W +II C
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTIITCYA 443
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ +E+L F G+ D + S+L++C+ L + +H IR G+ LDL
Sbjct: 444 QSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLV 502
Query: 143 TNNALMNMYAQ 153
N ++++Y +
Sbjct: 503 VKNRIIDIYGE 513
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L+++L + + ++ K++H + + ++S L+ +Y+ + +L + + +
Sbjct: 569 ALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAV 628
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K V W ++I +G +++ F RM+ +GV PDH F ++L +C+
Sbjct: 629 KCK-DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL N K + Q KQ+ A + K F+IS +L +Y + + + + +
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEI 1170
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+P VAW ++I C +NG +L + M S V PD F +++K+C+LL G
Sbjct: 1171 PSP-DDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQG 1229
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA ++L D + +L++MYA+ N++
Sbjct: 1230 RQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIE 1262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF-RFGESVHA 130
V+W ++I C +GL S+ FV ++ G+ PD SVL++C+ L +HA
Sbjct: 973 VSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C ++ GV LD + + L+++Y++S M+
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKME 1060
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW + Q G E++ CFV MI S V D F +L L G+ +H
Sbjct: 872 IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
++R G+D + N L+NMY ++
Sbjct: 932 VVRSGLDQVVSVGNCLINMYVKT 954
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++L++ ++ K+ HA+I + RFL + L+ +Y+ + + L
Sbjct: 625 SIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLF 684
Query: 63 DTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
DT T V W +I+ + F + S V + V K C L
Sbjct: 685 DTTPDTSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSAS 742
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
ES+H +++G+ D++ AL+N+YA+
Sbjct: 743 PSAAESLHGYAVKIGLQWDVFVAGALVNIYAK 774
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q +Q+HA K F+++ L+ +Y + D+ L
Sbjct: 1212 TFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1271
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T + +W ++I Q+G E+L F M GV PD F VL +C+
Sbjct: 1272 NT-SRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACS 1322
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A Q+HA K F+ + L+ +Y+ + ++ L + +W +++
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLF-VNQDGFDLASWNAMMHGYI 1085
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+G ++L ++ M SG + + K+ LV + G+ + A +++ G +LDL+
Sbjct: 1086 VSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLF 1145
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+ +++MY + M+ S + ++IP + +V ++ ++GC
Sbjct: 1146 VISGVLDMYLKCGEME------------------SARRIFNEIPSPD-DVAWTTMISGC 1185
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HAQ K S F+ + L +YN + L L + + + V+W +II
Sbjct: 243 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM-SMRDVVSWTTIITTLV 301
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G ++ F+RM S V P+ F +V+ C L +GE +HA I+ LG+ L
Sbjct: 302 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 361
Query: 143 TNNALMNMYAQ 153
N++M MYA+
Sbjct: 362 VENSIMTMYAK 372
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH KT NS F+ S LL +Y + + + + V+W +II + G
Sbjct: 145 LHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR-NVVSWTAIITGLVRAG 203
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L F M S V D F LK+C +G +HA ++ G D+ + N
Sbjct: 204 YNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN 263
Query: 146 ALMNMY 151
L MY
Sbjct: 264 TLATMY 269
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
I L+K V+++ K LHA I K+ L P+ L + L+ Y + + + L T
Sbjct: 8 IALIKQCVTLEA---LKSLHASILKSHLHPH---LCTSLIAQYASLGSISHAYALFSTSH 61
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + W IIR + SL + RM+ G+ + FP +LK+C L DF G
Sbjct: 62 S-SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 120
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
HA ++ G + D++ N+LM MY RF F F+ +V +++P
Sbjct: 121 RAHAHVVVFGYESDVFVANSLMAMYG-----------RFGCFDFS-------RQVFERMP 162
Query: 187 ERN 189
ERN
Sbjct: 163 ERN 165
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I Q L + +L F +M G+ PD S++ + + L F+ VH
Sbjct: 265 VAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGV 324
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF------------QGFGFNG-GREA 176
I R + + A++++Y + N++ +DR G+G +G GREA
Sbjct: 325 ITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREA 384
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ HA + + F+ + L+ +Y F S + + + V+W S++
Sbjct: 119 GARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPE-RNVVSWSSMVGAYA 177
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG E L F RM+ G+ P+ S++ + + + +I G+D D
Sbjct: 178 HNGRYEEGLLLFWRMLNEGIAPNRG---SIVNAMACIHREHEADDFCRVVIDNGLDSDQS 234
Query: 143 TNNALMNMYAQSQNMDM 159
NA M MYA+ +D+
Sbjct: 235 VQNAAMGMYARCGRIDV 251
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HAQ+ FL SRLL +Y V D+ + D + + +W +I+
Sbjct: 31 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM-SERNVFSWTAIMEMYCGL 89
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F M+ GV PDH VFP V K+C+ L ++R G+ V+ ++ +G + +
Sbjct: 90 GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 149
Query: 145 NALMNMYAQSQNMDM 159
++++M+ + MD+
Sbjct: 150 GSILDMFIKCGRMDI 164
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 52 FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPS 111
F +H + + L T V W SII C Q+G V +L M S V + S
Sbjct: 304 FQRMHIACSVFSELST-RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 362
Query: 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
L +C+ L R G+ +H IIR G+D + N+L++MY +
Sbjct: 363 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGR 404
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA-CI 132
W ++ T G ++L F +M+ GV P+ S + +CT L R G +H CI
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 239
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDM 159
+D DL N+L++ YA+ +++++
Sbjct: 240 KVEELDSDLLVGNSLVDYYAKCRSVEV 266
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+T T+++ L + Q K++H I + F+++ L+ +Y + S +
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRI 414
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
D L V+W +I +G ++++ F + G+ P+H F ++L +C+
Sbjct: 415 FD-LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 469
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H K + F+ + L+ +Y F + S L + + P VAW II C
Sbjct: 107 GRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNP-ELVAWNIIIDCHV 165
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E+L F RM+ G+ PD F +L +C+ L FG VH+CI +G
Sbjct: 166 SCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITE 225
Query: 143 TNNALMNMYAQ 153
NN+L++MYA+
Sbjct: 226 VNNSLLDMYAK 236
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T+ +LL++ + K + KQLHAQ + ++ L ++L+ +Y N + ++ L
Sbjct: 45 TTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNL 104
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
D K P + W +IR NG ++ + +M+ G+ PD+ P VLK+C+ L
Sbjct: 105 FD--KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALS 162
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G S+H +I+ G + DL+ AL++MYA+
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAK 195
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK ++ + + +H + K+ F+ + L+ +Y V D+ + D +
Sbjct: 150 TLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKI 209
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S++ QNG ES++ M +GV P +V+ S + +G
Sbjct: 210 -VVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYG 268
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDRFQ------------GFGFN 171
+H R G + AL++MYA+ S + + +++R + G+ +
Sbjct: 269 REIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMH 328
Query: 172 GGREASVHEVLDKI--PERNGNVELSSGLAGCNK 203
G ++ ++ DK+ +R ++ LA C++
Sbjct: 329 GLAVGAL-DLFDKMRKEDRPDHITFVGVLAACSR 361
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL L SI+ + +Q+H K++ ++ + + +L +Y + ++ L D +
Sbjct: 385 TLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM 444
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II C QNG E+L F MI S + PD + SVLK+C G
Sbjct: 445 ERR-DAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTG 503
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
+H II+ G+ D + AL++MY + ++ I+DR
Sbjct: 504 MEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDR 544
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNG +S+ F+ M GV D VLK+C L + G VH
Sbjct: 147 VSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGL 206
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+++ G D D+ T +AL+ MYA+ + +D + V ++PE+N
Sbjct: 207 VVKFGFDCDVVTGSALLGMYAKCKRLDDSL------------------SVFSELPEKNW- 247
Query: 192 VELSSGLAGCNKFEKRV 208
V S+ +AGC + ++ V
Sbjct: 248 VSWSAMIAGCVQNDRNV 264
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
S LL +Y + DSL + L V+W ++I C QN VE L F M G GV
Sbjct: 220 SALLGMYAKCKRLDDSLSVFSELPEK-NWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGV 278
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+++ S+ +SC L R G+ +H+ ++ D+ A ++MYA+
Sbjct: 279 GVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKC-------- 330
Query: 163 DRFQGFGFNGGREASVHEVLDKIPE 187
GR A +VL +P+
Sbjct: 331 ----------GRMADAQKVLSSMPK 345
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + + ++H +I K+ F+ + L+ +Y ++ + + D
Sbjct: 486 TYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRT 545
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTC---FVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V+W +II + LL +S F RM+ GV PD+ + +VL +C L
Sbjct: 546 EQKTM-VSWNAII---SGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATV 601
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA II+ + D+Y + L++MY++ NM
Sbjct: 602 GLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNM 636
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+HAQI K + ++ S L+ +Y+ + DS + +
Sbjct: 587 TYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFE-- 644
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V W +++ +GL E+L F M V P+H F SVL++C
Sbjct: 645 KAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACA 697
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA VA W SII QN +++L F M+ SG P F SVL +C L
Sbjct: 469 KMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEM 528
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VHA II+LG+ ++ AL +MYA+S ++D
Sbjct: 529 GKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F +E + LL +Y + + +LD + V+W +++ Q G
Sbjct: 302 RMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPE-RNEVSWGTLVARHEQKGNAK 360
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+++ + +M+ G P+ + F SVL +C L D R G +H +++ +++ ++AL+
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 149 NMYAQSQNM---DMHIYDRFQ-----------GFGFNGGREASVHEVLDKIPERN 189
+MY + + + M Y Q G+ N + E+ K+P RN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYS-NNSKMVEAEELFKKMPARN 474
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ + K +HA+I K S F+ + L +Y + S + +
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
VAW ++I+ +NG ES+ F MI +G+ P+ F ++L +C+
Sbjct: 572 PK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
S K +Q+HA + K+ + ++ + L+ +Y ++ + D + V+W
Sbjct: 158 ASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPE-RNIVSW 216
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I C QNG + E+L FVRM+ G PD SV+ +C L R G VH +++
Sbjct: 217 NSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVK 276
Query: 135 LG-VDLDLYTNNALMNMYAQ 153
D+ NNAL++MYA+
Sbjct: 277 SDRFREDMVLNNALVDMYAK 296
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +I N E+L FVR+ V+P H + +VL +C L + + G+ H
Sbjct: 347 VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVH 406
Query: 132 IIRLGV------DLDLYTNNALMNMYAQSQNM 157
+++ G + D++ N+L++MY ++ ++
Sbjct: 407 VLKEGFRFDSGPESDVFVGNSLVDMYLKTGSI 438
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F + + F + LL D+L L + P ++ +++ Q+G
Sbjct: 71 RVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP-DQCSYNAVVAALAQHGRGG 129
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L M + F S L +C R GE VHA + + D+Y AL+
Sbjct: 130 DALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALV 189
Query: 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+MYA+ + R +V D +PERN
Sbjct: 190 DMYAKCE------------------RPEEAQKVFDAMPERN 212
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL V+ + + +++HA + KT +L +RL+ +Y + + + D ++
Sbjct: 16 LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR-ER 74
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I +Q G E+L FV+M+ S P+ F +VL SCT F G +H
Sbjct: 75 NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ I + + ++ ++L++MYA++ GR V + +PER+
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKA------------------GRIHEARGVFECLPERD 176
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ IFK N F+ S LL +Y +H++ + + L V+ +II
Sbjct: 130 GRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECL-PERDVVSCTAIISGYA 188
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F R+ G+ ++ + S+L + + L G+ VH+ ++R + +
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVV 248
Query: 143 TNNALMNMYAQSQNMD 158
N+L++MY++ N++
Sbjct: 249 LQNSLIDMYSKCGNLN 264
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+HA+I K L + ++ ++L+ Y + + + L L+ +W +II
Sbjct: 78 GKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVR-NVFSWAAIIGV 136
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL +L FV M+ + ++PD+ V P+V K+C L RFG VH +++ G++
Sbjct: 137 KCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDC 196
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + +D +V D+IPERN
Sbjct: 197 VFVASSLADMYGKCGVLD------------------DARKVFDEIPERN 227
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 167 NVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI-PE 225
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M GV P + L + + G
Sbjct: 226 RNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQC 285
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +L+N Y +
Sbjct: 286 HAIAIVNGLELDNILGTSLLNFYCK 310
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L + L FG S+H
Sbjct: 501 ISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGY 560
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L +L++MYA+ +++
Sbjct: 561 IIRNLRHSSSASIETSLVDMYAKCGDIN 588
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
AK LHA + + S F+ +RL+ +Y N V S C D + P V W S+I
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQI--PQKDVYTWNSMISAY 192
Query: 82 TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
NG E++ CF +++ S + PD FP VLK+C LVD G +H +LG +
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWN 249
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +L++MY++ FGF G + D +P R+
Sbjct: 250 VFVAASLIHMYSR--------------FGFTG----IARSLFDDMPFRD 280
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSI 77
T +++H FK + F+ + L+ +Y+ F + L D + P + +W ++
Sbjct: 230 TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM--PFRDMGSWNAM 287
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I QNG ++L M G+ + S+L C L D +H +I+ G+
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
+ DL+ +NAL+NMYA+ N++
Sbjct: 348 EFDLFVSNALINMYAKFGNLE 368
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++H ++ KT F+ + L+ +Y + D++ L +
Sbjct: 522 TWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V W +II C +G ++L F M+ GV PDH F S+L +C+
Sbjct: 582 PQESS-VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + S A +H + K F+ + L+ +Y F + D+ +
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII QN V + FV+M +G PD S+ D +
Sbjct: 378 FI-TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436
Query: 126 ESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMD 158
SVH I+R G + D+ NA+++MYA+ +D
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470
>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
Length = 734
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + S KQ+HA++ K E SR ++ ++L+ Y + + S L L+
Sbjct: 56 EILQGCVYDRDLSTGKQIHARVLKNGEFYSRNEYIETKLVVFYAKCDDLEISESLFSRLR 115
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +I+ ++ G ++LT FV M+ + + PD+ V P+V K+C +L RFG
Sbjct: 116 IR-NVFSWAAIVGVRSRIGFSEDALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGR 174
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
SVH +++ + ++ ++L +MY + +D +V D+IP
Sbjct: 175 SVHGFVMKSRLHDCVFVASSLADMYGKRGFLD------------------DARKVFDEIP 216
Query: 187 ERN 189
ERN
Sbjct: 217 ERN 219
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M+ SG P+ L +C L G S+H
Sbjct: 493 ISWTTMMNGLVQNGCSEEAILFLRKMLESGARPNTVSIAIALSACANLASLHLGTSIHGY 552
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR + + +L++MYA+ +++
Sbjct: 553 IIRNQQHSSSVLVDTSLVDMYAKCGDIN 580
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H + K+ + F+ S L +Y + D+ + D + VAW +++
Sbjct: 173 GRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEI-PERNVVAWNAMMVGYV 231
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG+ E++ M G+ P L + + G+ HA I G+++D
Sbjct: 232 QNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAVAIVNGLEMDNI 291
Query: 143 TNNALMNMYAQSQNMDMH--IYDRFQG 167
+L+N Y + ++ ++DR G
Sbjct: 292 LGTSLLNFYCKVGLIEYAEMVFDRMIG 318
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ + +++ + +QLH+ KT F+ L+ +Y+ + D+ C+
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + V W SII +G E+L+ + M SGV D+ F +++ C L
Sbjct: 290 FDQMPEKTT-VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLAS 348
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD 163
+ HA ++R G LD+ N AL+++Y++ ++ H++D
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFD 392
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
AKQ HA + + + L+ +Y+ + + D+ + D + ++W ++I
Sbjct: 350 EHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV-ISWNALIAG 408
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G VE++ F RM+ G+ P+H F +VL +C+
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ + +++ + +QLH+ KT F+ L+ +Y+ + D+ C+
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + V W SII +G E+L+ + M SGV D+ F +++ C L
Sbjct: 290 FDQMPEKTT-VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLAS 348
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD 163
+ HA ++R G LD+ N AL+++Y++ ++ H++D
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFD 392
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
AKQ HA + + + L+ +Y+ + + D+ + D + ++W ++I
Sbjct: 350 EHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV-ISWNALIAG 408
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G VE++ F RM+ G+ P+H F +VL +C+
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445
>gi|255539304|ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551418|gb|EEF52904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 742
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F + S F + +L+ Y+N V +L L + + V+W +II +++G V
Sbjct: 180 RVFLGIRQPSLFCFNSMLYCYSNSYGVGKALDLFNRIP-ERDSVSWSTIISILSRHGFGV 238
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
+L+ F+ M G P+ F VL +CT + D +G +HA IIR + LD Y N L+
Sbjct: 239 PTLSMFIEMWTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLV 298
Query: 149 NMYAQ 153
MYA+
Sbjct: 299 YMYAK 303
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S+I Q+G L +VRM + PD F + + +C L + G + A
Sbjct: 455 ITWNSMISMYIQHGFQEWGLKLYVRMQRERIAPDDITFATSISACADLAMLKLGNQIVAQ 514
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+LG D+ N+L+ MY++ ++
Sbjct: 515 AEKLGFGSDVSVANSLVTMYSRCGQIE 541
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
++ T +L SI LHA+I + ++ + L+++Y + + +
Sbjct: 255 NSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMYAKCGHLKFARRVF 314
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++L T V+W S+I + GL E+L F +M V D F +VLK C+ +F
Sbjct: 315 NSL-TEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLVALDEFTFATVLKVCSH-PNF 372
Query: 123 RF-GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F G +HA + G+ + NAL+ MY++
Sbjct: 373 NFTGRQLHALTTKTGMGSIVTVGNALITMYSK 404
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ + +++ + +QLH+ KT F+ L+ +Y+ + D+ C+
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + V W SII +G E+L+ + M SGV D+ F +++ C L
Sbjct: 290 FDQMPEKTT-VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLAS 348
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD 163
+ HA ++R G LD+ N AL+++Y++ ++ H++D
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFD 392
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
AKQ HA + + + L+ +Y+ + + D+ + D + ++W ++I
Sbjct: 350 EHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV-ISWNALIAG 408
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G VE++ F RM+ G+ P+H F +VL +C+
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+T ++ LLK + T S +Q+HA+I + FLIS+ L + N+ + + +
Sbjct: 24 TTSSISTLLK---ACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVF 80
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + +P+ V W + I+ ++N + +++ F+RM S PD +PS++K+C+ +
Sbjct: 81 NGVSSPST-VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+ G + H +R GV D++ +L+++Y + G +V
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKC------------------GEILCARKVF 181
Query: 183 DKIPERNGNVELSSGLAGCNKFEKRV 208
D++ ERN V ++ +AG F V
Sbjct: 182 DEMGERN-VVSWTAMIAGYASFSDLV 206
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+++HA+ NS F+ + L+ +Y ++ + + D L+ V+W +++ +Q
Sbjct: 190 EKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ-KRDSVSWVAMLSGLSQ 248
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+G E++ F +M SGVYP +F SVL +CT + ++ GE +H +++ G L+ Y
Sbjct: 249 SGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYV 308
Query: 144 NNALMNMYAQSQNM 157
NAL+ +Y++ N
Sbjct: 309 CNALVTLYSRLGNF 322
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S++ +Q+H Q+ KT + ++ S L+ +Y + +L + L
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I Q+ E+L F M G++ D+ F S + +C + G
Sbjct: 535 KEK-DVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG 593
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA G DL NAL+++YA+
Sbjct: 594 QQIHAQACVSGYSDDLSVGNALVSLYAR 621
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
T+ +LL S+ KQ H+ K + L LL +Y ++ H+
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+T V W ++ L ES F +M G+ P+ +PS+L++C+ L
Sbjct: 434 ETENV----VLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAV 489
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
GE +H +++ G ++Y ++ L++MYA+ +D + I+ R +
Sbjct: 490 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK 535
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
I+ +Q +Q+HAQ + + + + L+ +Y V D+ D + + ++W S
Sbjct: 587 IQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK-DNISWNS 645
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I Q+G E+L+ F +M +G + F + + + + + G+ +HA II+ G
Sbjct: 646 LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTG 705
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D + +N L+ +YA+ N+D
Sbjct: 706 HDSETEVSNVLITLYAKCGNID 727
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+++T + LL +S S +LH +I K L RL+ +Y F + ++ +
Sbjct: 66 ANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTV 125
Query: 62 LDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL- 119
D + P P++ W ++ + L F RM+ V PD + VL+ C
Sbjct: 126 FDEM--PVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGD 183
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
V F E +HA I G + L+ N L+++Y F G S
Sbjct: 184 VPFHCVEKIHARTITHGYENSLFVCNPLIDLY------------------FKNGFLNSAK 225
Query: 180 EVLDKIPERN--GNVELSSGL--AGCNK 203
+V D + +R+ V + SGL +GC +
Sbjct: 226 KVFDGLQKRDSVSWVAMLSGLSQSGCEE 253
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ S+I +Q G ++L F +M + PD S+L +C+ + G+ H+
Sbjct: 338 VSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSY 397
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I+ G+ D+ AL+++Y + ++
Sbjct: 398 AIKAGMSSDIILEGALLDLYVKCSDI 423
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCC 81
KQ+HA I KT + + + L+ +Y + D+ + P ++W +++
Sbjct: 694 GKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAE--RQFFEMPEKNEISWNAMLTGY 751
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+Q+G ++L+ F M GV P+H F VL +C+
Sbjct: 752 SQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACS 787
>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
Length = 788
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+HA+I K + +R ++ ++LL Y + + + L L+ +W +II
Sbjct: 49 GQQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVR-NVFSWAAIIGL 107
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL +LT FV MI +GV PD+ V P+V K+C L FG VH +++ G+
Sbjct: 108 KCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDC 167
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + G +V DKIPERN
Sbjct: 168 VFVASSLADMYGKC------------------GVLNDARKVFDKIPERN 198
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L FG S+H
Sbjct: 472 ISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGY 531
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L + +L++MYA+ +++
Sbjct: 532 IIRNLQHSSSVSFVTSLVDMYAKCGDIN 559
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCC 81
+ +H + K + F+ S L +Y +++D+ + D K P VAW +++
Sbjct: 152 GRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFD--KIPERNVVAWNALMVGY 209
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG+ E++ M G+ P + L + + G+ HA I G+++D
Sbjct: 210 VQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDN 269
Query: 142 YTNNALMNMYAQ 153
+++N Y +
Sbjct: 270 ILGTSILNFYCK 281
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K +Q+H + ++ + + S L+ +Y D+ + D + V+W S+
Sbjct: 165 KDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPE-RNVVSWNSL 223
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG- 136
I C QNG + E+L FV M+ +G PD SV+ +C L R G VHA +++
Sbjct: 224 ITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDR 283
Query: 137 VDLDLYTNNALMNMYAQ 153
+ D+ NNAL++MYA+
Sbjct: 284 LRDDMVLNNALVDMYAK 300
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW +I QNG E++ FV++ ++P H + +VL +C + D + G+ H
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVH 410
Query: 132 IIR------LGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + D++ N+L++MY ++ ++D
Sbjct: 411 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 53/221 (23%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ ++ L +LL++ ++ S A+ HA+I K+ FL++ L+ Y + D+
Sbjct: 17 LRASSPLADLLRSAPNL---SGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARR 73
Query: 61 LLDTL-----------------------------KTPAP-PVAWKSIIRCCTQNGL--LV 88
+ D + P P ++ +++ ++G
Sbjct: 74 VFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAA 133
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L M + F S L +C D R GE VH + R D++ +AL+
Sbjct: 134 DALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALV 193
Query: 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+MYA+ + R V D +PERN
Sbjct: 194 DMYAKCE------------------RPEDARRVFDAMPERN 216
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK + + K LH+ + FL L+ +Y+ + +++L + + +
Sbjct: 297 TLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMI 356
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P VAW +II Q G E+ F M GV P+ F SV+ + T + D G
Sbjct: 357 EEP-DIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLG 415
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+S+H CI + G + D NAL+ MY +S
Sbjct: 416 QSIHCCICKYGYESDNSVGNALITMYMKS 444
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H I K + + + L+ +Y V D + + DT+ T V+W +++
Sbjct: 415 GQSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTM-TNRDLVSWNALLSGFY 473
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L F +M+ G+ P+ F VL+SC+ L++ FG+ VHA II+ +D + +
Sbjct: 474 DFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDF 533
Query: 143 TNNALMNMYAQSQNMD 158
AL++MYA+++ ++
Sbjct: 534 VGTALIDMYAKNRCLE 549
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
K +L+ S ++ +H + K+ LEP+S +S L+ +Y + + +L
Sbjct: 94 KRYSGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVS-LINLYAKCGSLAFARKVLV 152
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++ V+W ++I G + + + M + P+ +VLK+ ++ D +
Sbjct: 153 GMR-ERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIK 211
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
FG+ +H I+ G+ LDL+ +AL+++YA+ M++
Sbjct: 212 FGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMEL 247
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L++ S+ KQ+HA I K + F+ + L+ +Y + D+ + L
Sbjct: 499 TFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKL 558
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T W II +Q +++ +M+ G+ P+ S L C+ + G
Sbjct: 559 -TNRDLFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNG 617
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ I+ G D++ ++AL++MY + M+
Sbjct: 618 QQLHSLAIKSGHSGDVFVSSALVDMYGKCGCME 650
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L + T +QLH+ K+ F+ S L+ +Y + D+ + L
Sbjct: 600 TLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGL 659
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ VAW +II +Q+G ++L F M+ + PD F VL +C+ +
Sbjct: 660 FSR-DTVAWNTIICGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIGVLAACSYM 712
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK K +H + KT F+ S L+ +Y F + L D +
Sbjct: 196 TLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEME----LADRV 251
Query: 66 KTPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
P V+W +++ Q G L F RM+ + + +VLK C +
Sbjct: 252 FFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNL 311
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R G+++H+ IR +LD + L++MY++
Sbjct: 312 REGKALHSLSIRRAYELDEFLGCNLVDMYSK 342
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 21/205 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDS 58
T T+TL +LL+ S+ + KQ+HAQ+FKT IS L N+ NL +
Sbjct: 9 TMTQTL-SLLEKCSSMM---ELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAK 64
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ + D+L + W +++R + E+L + +M+ V + FP +LK+C+
Sbjct: 65 I-VFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSS 123
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF---QGFGFNG- 172
L + VHA II+LG D+YT N+L++ YA S ++ I+DR +N
Sbjct: 124 LSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSI 183
Query: 173 -------GREASVHEVLDKIPERNG 190
G + +E+ +PE+N
Sbjct: 184 IDGYVKCGETETAYELFKDMPEKNA 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 84/213 (39%), Gaps = 47/213 (22%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK S+ +A+Q+HAQI K + + + LL Y + + + D + P
Sbjct: 117 LLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHP- 175
Query: 70 PPVAWKSII----RCC---------------------------TQNGLLVESLTCFVRMI 98
V+W SII +C Q GL E+L F M
Sbjct: 176 DTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQ 235
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+G+ PD V +VL +C L G +H I + V +D AL +MYA+ +M
Sbjct: 236 IAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQ 295
Query: 159 --MHIYDR------------FQGFGFNG-GREA 176
+ ++ + GF +G GREA
Sbjct: 296 DALEVFKKTRKKSVSLWTALIHGFAIHGRGREA 328
>gi|255556101|ref|XP_002519085.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541748|gb|EEF43296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1157
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG VES FVRM+ +GV + + F S+L +C+ L + + G+ +HAC
Sbjct: 697 VSWNTLISGYVQNGYAVESFKSFVRMMDNGVMWNEHTFASLLSACSGLRNLKLGKEIHAC 756
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+++ G+D + Y + ++++Y + N+
Sbjct: 757 VLKNGMDSNPYIESGIIDVYCKCGNV 782
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
PD + SVL +C L G+ +H + R+G+ +D + A+++MY++S
Sbjct: 862 PDSLILISVLGACALEAALSPGKQIHGYVFRMGITMDKKMSTAMVDMYSKS 912
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTLKTPAPPVAWKSIIRCC 81
KQ+H Q+ K F+ S L+ +Y N + D C K V W ++I C
Sbjct: 343 GKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDV--VTWTAMISGC 400
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L +L F ++G G+ PD SV+ +C L R GE + + G D
Sbjct: 401 VQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFT 460
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++MYA+S N++ I RFQ
Sbjct: 461 AMGNSCIHMYARSGNVEAAI-QRFQ 484
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +H + K FL S ++ +Y + +++ L ++ P V I C
Sbjct: 236 AEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCR 295
Query: 83 QNG-----LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
++ E+L+ + + G+ P F SV+++C L D FG+ +H +++
Sbjct: 296 DEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCF 355
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
D + +AL+++Y S M+ D F+ F
Sbjct: 356 QGDDFIGSALIDLYFNSACME----DGFRCF 382
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLKTPAPPVAWKSIIR 79
QA +H I + S FL + LL Y H + LLD + V++ +I
Sbjct: 28 QAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRR-NAVSFNLLID 86
Query: 80 CCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
++ G ESL F+ + V D + + L +C+ + G+ VHA + G+
Sbjct: 87 AYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLA 146
Query: 139 LDLYTNNALMNMYAQSQNM 157
++ +N+L++MYA+ +M
Sbjct: 147 EGVFVSNSLVSMYARCGDM 165
>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT----LEPNSRFLISRLLF--IYNNFNL 54
M +TK L L+K ++K AKQ+HAQI LEP I R+L I N +
Sbjct: 1 MVATK-LTTLMKKCSTVK---HAKQIHAQIITNNLTHLEP---IFIHRILLCDITNYKTI 53
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
+ L +L L+ P +W +IR +Q G VE+++ +V+M G+ P + S+LK
Sbjct: 54 SNYILSILHHLRNP-DSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILK 112
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGR 174
SC + D G +H + + G D +Y AL+++Y + G
Sbjct: 113 SCARVEDDLCGLLIHGHVHKFGFDACVYVQTALLDLYCKI------------------GD 154
Query: 175 EASVHEVLDKIPERN---GNVELSSGLAGCN 202
+ +V D++P++N N LS + G N
Sbjct: 155 VVTARKVFDEMPDKNVVSWNSLLSGYIKGGN 185
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F + + + ++ Y+ VH + L D + +++ ++I C Q+
Sbjct: 253 ELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDK-DLLSYNAMIACYAQSSKPK 311
Query: 89 ESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
E+L F M+ S ++PD SV+ +C+ L + + + I G+ LD + A
Sbjct: 312 EALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATA 371
Query: 147 LMNMYAQSQNMDMHIYDRFQGF 168
L+++YA+ ++D Y+ F G
Sbjct: 372 LIDLYAKCGSID-KAYELFHGL 392
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
I L+K V+++ K LHA I K+ L P+ L + L+ Y + + + L T
Sbjct: 471 IALIKQCVTLEA---LKSLHASILKSHLHPH---LCTSLIAQYASLGSISHAYALFSTSH 524
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + W IIR + SL + RM+ G+ + FP +LK+C L DF G
Sbjct: 525 S-SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 583
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
HA ++ G + D++ N+LM MY RF F F+ +V +++P
Sbjct: 584 RAHAHVVVFGYESDVFVANSLMAMYG-----------RFGCFDFS-------RQVFERMP 625
Query: 187 ERN 189
ERN
Sbjct: 626 ERN 628
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I Q L + +L F +M G+ PD S++ + + L F+ VH
Sbjct: 728 VAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGV 787
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF------------QGFGFNG-GREA 176
I R + + A++++Y + N++ +DR G+G +G GREA
Sbjct: 788 ITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREA 847
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ NG E L F RM+ G+ P+ S++ + + +
Sbjct: 630 VSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRG---SIVNAMACIHREHEADDFCRV 686
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+I G+D D NA M MYA+ +D+
Sbjct: 687 VIDNGLDSDQSVQNAAMGMYARCGRIDV 714
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLKTPAPPVAWK 75
KT + KQ+H+ + KT + SRL+ N L + + + D V W
Sbjct: 16 KTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYV-WN 74
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I+ G +L + M G YPDH FP VLK C+ + +G+SVH I++
Sbjct: 75 SMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKT 134
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G +LD+YT++ L+NMY +++
Sbjct: 135 GFELDVYTSSCLLNMYVSCGDLN 157
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S+I +Q G E+L FV M +G P+ F SV+++CT L G+S+HA
Sbjct: 280 VVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHAR 339
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ + ALM+MYA+S + D
Sbjct: 340 VLKANFHEFVAIGTALMDMYAKSGDAD 366
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 23 AKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H Q+ K +S + LL +Y N DS L L+ P V W ++I
Sbjct: 630 GRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGY 689
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q ++L + M + PD F SVL++C + + G+ VH+ I G ++D
Sbjct: 690 AQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDE 749
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
T ++L++MYA+ ++ + +V ++P RN + +S + G
Sbjct: 750 ITCSSLIDMYAKCGDVKGSL------------------QVFHEMPRRNSVISWNSMIVGL 791
Query: 202 NK 203
K
Sbjct: 792 AK 793
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ +GL + FV M GV P+ F VL +C+ L D +G+ VH +
Sbjct: 109 AWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGV 168
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
++G + L++MYA+ +N+
Sbjct: 169 FKMGFGFRSFCQGGLIDMYAKCRNL 193
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ P P VAW +I + G E+++ F+ + +G+ + SVL + L +
Sbjct: 268 QIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNY 327
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA I+ G+D ++Y +AL+NMYA+ MD
Sbjct: 328 GSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMD 361
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + K ++ F+ + L+ +Y + ++ + +K V+W +II Q
Sbjct: 431 QLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIH-DNVSWNAIIVGYVQE 489
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
E+ F RM+ +GV PD S++ +C + +F+ G+ H ++++G+D
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAG 549
Query: 145 NALMNMYAQ 153
++L++MY +
Sbjct: 550 SSLIDMYVK 558
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+ +L ++L S+ + +HAQ K ++ ++ S L+ +Y + + + +
Sbjct: 307 ATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQV 366
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++L V W +++ QNGL E + F M G PD F S+ +C L
Sbjct: 367 FNSL-GERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHY 425
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
FG +H +I+ +L+ NAL++MYA+S
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKS 458
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ + + +++H+ IF T S L+ +Y V SL + +
Sbjct: 716 TFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEM 775
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I +NG E+L F +M + PD F VL +C+
Sbjct: 776 PRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + +IR N L VE+L+ F M+ PDH FP VLK+C+ L + R G VH
Sbjct: 103 VFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDA 162
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
I+++G+D +L+ NAL+ MY + + REA +VLD++P R+
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCL----------------REA--RKVLDQMPYRD-V 203
Query: 192 VELSSGLAG 200
V +S +AG
Sbjct: 204 VSWNSMVAG 212
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I N + E+++ F++M G+ PD S+L +C L G +H
Sbjct: 272 ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I + + +L NAL++MYA+
Sbjct: 332 IEKGNLQPNLLLENALLDMYAK 353
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
++LH I K L+PN L + LL +Y + ++ + D ++ V+W S++
Sbjct: 325 GRRLHKYIEKGNLQPN-LLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAY 382
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++G +++ F +M+ SG PD F SVL +C+
Sbjct: 383 GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKS 76
K+ + A+ +H Q+ P+ + ++ +Y FN +L +L L + V W
Sbjct: 40 KSLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQ 96
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR G L + L + RM G PDH FP VLK+C + FR G SVHA + G
Sbjct: 97 LIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG 156
Query: 137 VDLDLYTNNALMNMYAQ 153
+ +++ N L++MY +
Sbjct: 157 FEWNVFVGNGLVSMYGR 173
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I + +HA +F + + F+ + L+ +Y ++ + D ++
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 191
Query: 70 PP--VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGE 126
V+W SI+ Q G + ++ F RM G+ PD +VL +C + + G+
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 251
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH +R G+ D++ NA+++MYA+ M+
Sbjct: 252 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMME 283
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 84/181 (46%), Gaps = 5/181 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L+N+L S+ S+ KQ+H ++ F+ + ++ +Y ++ ++ + + +
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFR 123
K V+W +++ +Q G ++L F ++ + + NV S+L C L
Sbjct: 293 KV-KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNPNVVTLVSLLSGCALAGTLL 351
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G+ H I+ ++LD N+ ++ + +D+ + R + G+ ++H+V D
Sbjct: 352 HGKETHCHAIKWILNLD--ENDPGDDLMVINALIDIDLMQRIKALGYVPDNRFALHDVDD 409
Query: 184 K 184
+
Sbjct: 410 E 410
>gi|297736355|emb|CBI25078.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK+LHA + + + S F+ RL+ +Y + V S D ++ W S+I
Sbjct: 66 AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRK-DVYTWNSMISAYV 124
Query: 83 QNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGVDLD 140
+NG E++ CF +++ + D FP VLK+C TLL D +H +I+ G++ +
Sbjct: 125 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLLGDISTATLIHLYVIKHGLEFE 184
Query: 141 LYTNNALMNMYAQSQNM 157
L+ +NAL+NMYA+ N+
Sbjct: 185 LFVSNALINMYAKFGNL 201
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + +IR N L VE+L+ F M+ PDH FP VLK+C+ L + R G VH
Sbjct: 103 VFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDA 162
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
I+++G+D +L+ NAL+ MY + + REA +VLD++P R+
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCL----------------REA--RKVLDQMPYRD-V 203
Query: 192 VELSSGLAG 200
V +S +AG
Sbjct: 204 VSWNSMVAG 212
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I N + E+++ F++M G+ PD S+L +C L G +H
Sbjct: 272 ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I + + +L NAL++MYA+
Sbjct: 332 IEKGNLRPNLLLENALLDMYAK 353
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
++LH I K L PN L + LL +Y + ++ + D ++ V+W S++
Sbjct: 325 GRRLHKYIEKGNLRPN-LLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAY 382
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++G +++ F +M+ SG PD F SVL +C+
Sbjct: 383 GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL+ K+ + K +H I + +R++ + L+F+Y + D+L + + L P
Sbjct: 31 SLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELL--P 88
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P V +W ++I + G L E L F +M G PD VF +VL +C+ G++
Sbjct: 89 NPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+H C + G++ + NA++N+Y + GR V +++PE
Sbjct: 149 IHDCAVLAGMETQV-VGNAIVNLYGKC------------------GRVHEAKAVFERLPE 189
Query: 188 RN 189
RN
Sbjct: 190 RN 191
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDH 106
+Y VH++ + + L V+W ++I QNG +++ F M + V P+
Sbjct: 170 LYGKCGRVHEAKAVFERLPER-NLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPND 228
Query: 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
F SV+ +C+ L+D G+S H IIR G D L+ N+L+NMY + ++D
Sbjct: 229 ATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVD 280
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRC 80
+A+Q+HA + + + L L+ +Y V + + + LK + V W ++I
Sbjct: 344 RAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISG 403
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q+G ++L CF +M GV P+ + + L++C+ L D G +HA I+ + +
Sbjct: 404 LAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIH-E 462
Query: 141 LYTNNALMNMYAQSQNMD 158
+NA++NMY + ++D
Sbjct: 463 ANLSNAVINMYGKCGSLD 480
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K H +I +T + F+ + L+ +Y V + + + + + V+W +I
Sbjct: 246 RGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSR-NVVSWTVMIWAY 304
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G + + + RM P+ F +V+ SC D E +HA ++ G D D
Sbjct: 305 AQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDA 361
Query: 142 YTNNALMNMYAQSQNMD 158
L+ MY + ++D
Sbjct: 362 VLQVCLVTMYGKCGSVD 378
>gi|147861799|emb|CAN81086.1| hypothetical protein VITISV_027167 [Vitis vinifera]
Length = 1756
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
K A ++F S F + +++ Y+ + V +L L + V+W ++I
Sbjct: 1564 KCGAMDFAQKVFCRTSNPSLFCWNSMIYGYSKYGSVKKALELFAKMPE-RDTVSWNTMIS 1622
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+Q+G E+L F+ M G P+ + SVL +CT + D +G +HA I+R+ L
Sbjct: 1623 ILSQHGFGAETLNMFLEMWKQGFRPNSMTYASVLSACTNIYDLEWGAHLHARIVRMEPRL 1682
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
D+Y L++MYA+ GR S +V D + E N
Sbjct: 1683 DVYARCGLIDMYAKC------------------GRLESARQVFDGLTEHN 1714
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKS 76
K+ + A+ +H Q+ P+ + ++ +Y FN +L +L L + V W
Sbjct: 40 KSLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQ 96
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR G L + L + RM G PDH FP VLK+C + FR G SVHA + G
Sbjct: 97 LIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG 156
Query: 137 VDLDLYTNNALMNMYAQ 153
+ +++ N L++MY +
Sbjct: 157 FEWNVFVGNGLVSMYGR 173
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I + +HA +F + + F+ + L+ +Y ++ + D ++
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 191
Query: 70 PP--VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGE 126
V+W SI+ Q G + ++ F RM G+ PD +VL +C + + G+
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 251
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH +R G+ D++ NA+++MYA+ M+
Sbjct: 252 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMME 283
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL------EPNSRFL-ISRLLFIYNNFNLVHDS 58
TL++LL T K+ H K + +P + I+ L+ +Y+ +
Sbjct: 369 TLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAA 428
Query: 59 LCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV- 112
+ D + PP V W +I Q+G E+L F +M+ PD+ V P+
Sbjct: 429 RAMFDLI----PPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAF 480
Query: 113 -----LKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMD 158
L +C L RFG +HA ++R + L+ N L++MY++S ++D
Sbjct: 481 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 532
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 41/192 (21%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-------------------------------QIFKTL 34
+L+N+L S+ S+ KQ+H ++F+ +
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292
Query: 35 EPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESL 91
+ + ++ Y+ D+L L + + K V W ++I Q GL E+L
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-------DLYTN 144
F +M G P+ S+L C L G+ H I+ ++L DL
Sbjct: 353 DVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 412
Query: 145 NALMNMYAQSQN 156
NAL++MY++ ++
Sbjct: 413 NALIDMYSKCKS 424
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+HA+I K + ++ ++L+ Y + + + L L+ +W +II
Sbjct: 89 GKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRV-RNVFSWAAIIGV 147
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL +L FV M+ + ++PD+ V P+V K+C L RFG VH +++ G++
Sbjct: 148 KCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDC 207
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + +D +V D+IPERN
Sbjct: 208 VFVASSLADMYGKCGVLD------------------DARKVFDEIPERN 238
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 178 NVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIP-E 236
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M GV P + L + + G+
Sbjct: 237 RNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQS 296
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
HA I G++LD +L+N Y + ++ I+DR
Sbjct: 297 HAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRM 335
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L + L FG S+H
Sbjct: 512 ISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHGY 571
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNM-------------DMHIYDRF-QGFGFNGG-RE 175
I+R L + +L++MYA+ ++ ++ +Y+ + G +E
Sbjct: 572 IVRNLQHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKE 631
Query: 176 A-SVHEVLDKIPERNGNVELSSGLAGCN 202
A +++ L+ + + N+ +S L+ CN
Sbjct: 632 AITLYRSLEDMGNKPDNITFTSLLSACN 659
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++L+ S+ Q+H + K F+ S L +Y+ + D+ + +
Sbjct: 178 ALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEM 237
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I +NG ++LT +++M+ V+ D +V S L +C+ L FG
Sbjct: 238 PCK-DAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFG 296
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+S+HA I++LG + + + NAL +MY++S +M
Sbjct: 297 KSLHATILKLGFEYETFIGNALTDMYSKSGDM 328
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++ TKT+ +L++ K ++ KQLHA + + + FL + L +Y+ + ++
Sbjct: 72 LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L D + + V+W SII N E+L+ F +M G SVL++CT L
Sbjct: 132 LFDKM-SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLG 190
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+FG VH +++ G +L+ + L +MY++
Sbjct: 191 AIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSK 223
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+K + QLH Q+ K F+ S L+ +Y L S+ L D +
Sbjct: 381 TFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEI 440
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P +AW +++ +Q+GL ++ F MI G+ P+ F ++LK C+
Sbjct: 441 ENP-DEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCS 491
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + L ++K S K LHA I K F+ + L +Y+ + + +
Sbjct: 280 LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHS 339
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
V+ +II + + ++L+ FV + G+ P+ F S++K+C G
Sbjct: 340 DCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGS 399
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+H +++ D + ++ L++MY + D + ++D +
Sbjct: 400 QLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE 441
>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
Length = 529
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVY--PDHNVFPSVLKSCTLLVDFRFGESVHA 130
AW ++I C QNG E+L F RM+ ++ P+ F SV+ +C+ L D RFG V +
Sbjct: 248 AWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWVES 307
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
+ +GV LD + AL+++Y +S MD +D F+G
Sbjct: 308 FMGYVGVHLDDHLRTALIDLYTKSGQMD-RAFDLFRGL 344
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA VA W SII QN +++L F M+ SG P F SVL +C L
Sbjct: 469 KMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEM 528
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VHA II+LG+ ++ AL +MYA+S ++D
Sbjct: 529 GKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F +E + LL +Y + + +LD + V+W +++ Q G
Sbjct: 302 RMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPE-RNEVSWGTLVARHEQKGNAK 360
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+++ + +M+ G P+ + F SVL +C L D R G +H +++ +++ ++AL+
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 149 NMYAQSQNM---DMHIYDRFQ-----------GFGFNGGREASVHEVLDKIPERN 189
+MY + + + M Y Q G+ N + E+ K+P RN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYS-NNSKMVEAEELFKKMPARN 474
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ + K +HA+I K S F+ + L +Y + S + +
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
VAW ++I+ +NG ES+ F MI +G+ P+ F ++L +C+
Sbjct: 572 PK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 16/143 (11%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ +T++ P + W ++IR + V SLT +V M+ G+ P+ FP +LKSC
Sbjct: 20 VFETIQEPNQLI-WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSK 78
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQ 166
F G+ +H +++LG DLDLY + +L++MY Q+ ++ ++DR
Sbjct: 79 TFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALIT 138
Query: 167 GFGFNGGREASVHEVLDKIPERN 189
G+ G S ++ D+IP ++
Sbjct: 139 GYASRGDIR-SAQKLFDEIPVKD 160
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ V PD + + +VL +C G VH+
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSW 221
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFN 171
+ G D +L NAL+++Y++ ++ FQG +
Sbjct: 222 VDDHGFDSNLKIVNALIDLYSKCGEVETAC-GLFQGLSYK 260
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I T L E+L F M+ SG P+ SVL +C L G +H
Sbjct: 263 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVY 322
Query: 132 IIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 323 IDKRLKGVTNASSLRTSLIDMYAKCGDIE 351
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA VA W SII QN +++L F M+ SG P F SVL +C L
Sbjct: 469 KMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEM 528
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VHA II+LG+ ++ AL +MYA+S ++D
Sbjct: 529 GKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F +E + LL +Y + + +LD + V+W +++ Q G
Sbjct: 302 RMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPE-RNEVSWGTLVARHEQKGNAK 360
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+++ + +M+ G P+ + F SVL +C L D R G +H +++ +++ ++AL+
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 149 NMYAQSQNM---DMHIYDRFQ-----------GFGFNGGREASVHEVLDKIPERN 189
+MY + + + M Y Q G+ N + E+ K+P RN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYS-NNSKMVEAEELFKKMPARN 474
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
VAW ++I+ +NG ES+ F MI +G+ P+ F ++L +C+
Sbjct: 577 VAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ QNG ++S+ FV M G+ D F +LK C+ L D G +H
Sbjct: 146 VSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGI 205
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
++R+G D D+ +AL++MYA+ G R V IPE+N +
Sbjct: 206 VVRVGCDTDVVAASALLDMYAK------------------GKRFVESLRVFQGIPEKN-S 246
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 247 VSWSAIIAGC 256
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +LK ++ S Q+H + + S LL +Y +SL +
Sbjct: 181 RTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQG 240
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W +II C QN LL +L F M +++ SVL+SC L + R
Sbjct: 241 IPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 299
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA ++ D A ++MYA+ NM
Sbjct: 300 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNM 332
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y + ++ + D ++ V+W +II QNG E+L FV M+ S + PD
Sbjct: 426 MYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEF 484
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F S+LK+CT +G +H+ I++ G+ + +L++MY++
Sbjct: 485 TFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII ++ F RM+ G+ PD + +VL +C L G+ +HA
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ + D+Y + L++MY++
Sbjct: 629 VIKKELQSDVYICSTLVDMYSK 650
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ + KQ+HAQ+ K + ++ S L+ +Y+ +HDS + +
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK- 663
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W ++I +G E++ F RMI + P+H F S+L++C
Sbjct: 664 SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S ++L++ ++ QLHA K+ + + L +Y + + D+ L
Sbjct: 279 VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQIL 338
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + ++ ++I +Q ++L F R++ SG+ D V ++C L+
Sbjct: 339 FDNSENLNRQ-SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKG 397
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G ++ I+ + LD+ NA ++MY + Q + + F+ F R+A
Sbjct: 398 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA----EAFRVFDEMRRRDAVSWNA 453
Query: 182 LDKIPERNGN 191
+ E+NG
Sbjct: 454 IIAAHEQNGK 463
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 28/211 (13%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLC 60
+ K+ I LLKN K+ KQ+ QI +T S +++ + + ++ +H +
Sbjct: 31 TKKSCIFLLKN---CKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAER 87
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + + P + + +I+ T+NG +++ F ++ G+ PD+ +P V K+ L
Sbjct: 88 IFNYIDIPGLFI-YNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLG 146
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ R GE V+ +++ G++ D Y N+LM+MYA+ GR ++ +
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEV------------------GRVQNLRQ 188
Query: 181 VLDKIPERN---GNVELSSGLAGCNKFEKRV 208
V +++P+R+ NV L SG C ++E V
Sbjct: 189 VFEEMPQRDVVSWNV-LISGYVKCRRYEDAV 218
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y + SL + + LK +W SII NG ++L F M+ +GV P
Sbjct: 315 LIEMYAKCGFIEKSLEIFNGLKE-KDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 373
Query: 105 DHNVFPSVLKSCT 117
D F VL +C+
Sbjct: 374 DDITFIGVLSACS 386
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 31 FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90
FK L + I+R L + L+ ++L + + + + W IIR T NGL E+
Sbjct: 50 FKPLARPNDLNITRDLCGFVESGLMGNALDMFEKM-NHSDTFIWNVIIRGYTNNGLFQEA 108
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
+ + RM G+ D+ FP V+K+C L+ G+ VH +I++G DLD+Y N L++M
Sbjct: 109 IDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDM 168
Query: 151 Y 151
Y
Sbjct: 169 Y 169
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L + ++S+ KQ+H+ I K ++ F+ + ++++Y + + D +
Sbjct: 414 TIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGM 473
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFR 123
V+W ++I +G S+ F M G G P+ + F S+L +C++ L+D
Sbjct: 474 -VCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEG 532
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+G ++ + G+D + ++++ ++ N+D
Sbjct: 533 WG-FFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLD 566
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QN E+L F ++ + PD SVL + L G+ +H+
Sbjct: 378 VSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSY 437
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I++LG+ + + +NA++ MYA+ ++
Sbjct: 438 IMKLGLGSNTFISNAIVYMYAKCGDL 463
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ +G + SL CF M+ G D S L +C++ R G +H
Sbjct: 191 VSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQ 250
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR ++LD+ +L++MY + +D
Sbjct: 251 VIRSELELDIMVQTSLIDMYGKCGKVD 277
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA VA W SII QN +++L F M+ SG P F SVL +C L
Sbjct: 469 KMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEM 528
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VHA II+LG+ ++ AL +MYA+S ++D
Sbjct: 529 GKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F +E + LL +Y + + +LD + V+W +++ Q G
Sbjct: 302 RMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPE-RNEVSWGTLVARHEQKGNAK 360
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+++ + +M+ G P+ + F SVL +C L D R G +H +++ +++ ++AL+
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 149 NMYAQSQNM---DMHIYDRFQ-----------GFGFNGGREASVHEVLDKIPERN 189
+MY + + + M Y Q G+ N + E+ K+P RN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYS-NNSKMVEAEELFKKMPARN 474
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
VAW ++I+ +NG ES+ F MI +G+ P+ F ++L +C+
Sbjct: 577 VAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N++K ++ + + +H + K+ + S L+ +Y FNL +SL + D +
Sbjct: 109 TFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEM 168
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P VA W ++I C Q+G ++L F RM SG P+ + +C+ L+
Sbjct: 169 --PERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLER 226
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G+ +H ++ G +LD Y N+AL++MY + +++
Sbjct: 227 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEV 261
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I+ G + RMI G P S+L +C+ + G+ +H
Sbjct: 275 VAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGY 334
Query: 132 IIRLGVDLDLYTNNALMNMY 151
+IR V+ D+Y N +L+++Y
Sbjct: 335 VIRSVVNADIYVNCSLIDLY 354
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S+K L L + S K+ + K +H +I L L+ +Y +
Sbjct: 1 MESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARH 60
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLL 119
+ + + W S++ ++N + ++L F R++ + PD FP+V+K+ L
Sbjct: 61 VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGAL 120
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G +H +++ G D+ ++L+ MYA +F F E S+
Sbjct: 121 GREFLGRMIHTLVVKSGYVCDVVVASSLVGMYA-----------KFNLF------ENSL- 162
Query: 180 EVLDKIPERN 189
+V D++PER+
Sbjct: 163 QVFDEMPERD 172
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I G +++ + +M+ GV PD F SVL +C+ L G+ +H I
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 133 IRLGVDLDLYTNNALMNMYAQSQN 156
++ D +AL++MY++ N
Sbjct: 437 SESRLETDELLLSALLDMYSKCGN 460
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 21/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + S KQ+HA+I K + +R ++ ++L+ Y + + + L L+
Sbjct: 75 EILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLR 134
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M+ + ++PD+ V P+V K+C L RFG
Sbjct: 135 V-RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH +++ G++ ++ ++L +MY + +D +V D+IP
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGKCGVLD------------------DASKVFDEIP 235
Query: 187 ERNG 190
+RN
Sbjct: 236 DRNA 239
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K ++K + +H + K+ + F+ S L +Y ++ D+ + D +
Sbjct: 178 NVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI-PD 236
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG E++ F M GV P + L + + G+
Sbjct: 237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQS 296
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +L+N Y +
Sbjct: 297 HAIAIVNGMELDNILGTSLLNFYCK 321
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L G ++H
Sbjct: 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGY 571
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L + +L++MYA+ +++
Sbjct: 572 IIRNLQHSSLVSIETSLVDMYAKCGDIN 599
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 28/211 (13%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLC 60
+ K+ I LLKN K+ KQ+ QI +T S +++ + + ++ +H +
Sbjct: 31 TKKSCIFLLKN---CKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAER 87
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + + P + + +I+ T+NG +++ F ++ G+ PD+ +P V K+ L
Sbjct: 88 IFNYIDIPGLFI-YNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLG 146
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ R GE V+ +++ G++ D Y N+LM+MYA+ GR ++ +
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEV------------------GRVQNLRQ 188
Query: 181 VLDKIPERN---GNVELSSGLAGCNKFEKRV 208
V +++P+R+ NV L SG C ++E V
Sbjct: 189 VFEEMPQRDVVSWNV-LISGYVKCRRYEDAV 218
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ LL + T Q K +H I + + + L+ +Y + SL + + L
Sbjct: 367 TLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGL 426
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K +W SII NG ++L F M+ +GV PD F VL +C+
Sbjct: 427 K-EKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACS 477
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I++L++ S+ KQ+HAQI K + F+ + L+ +Y + D+ + + L
Sbjct: 293 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 352
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
AW I+ Q+G +++ CF++M GV P+ S L C+ + G
Sbjct: 353 -IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 411
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ I+ G D++ +AL++MYA+
Sbjct: 412 RQLHSMAIKAGQSGDMFVASALVDMYAK 439
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T I++LK S ++ K +H Q+ K+ + P+S L + L+ +Y + + C +
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDSH-LWNSLVNVYAKCGSANYA-CKVFG 250
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V+W ++I G L F +M+ G P+ F S+L+SC+ L D
Sbjct: 251 EIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF------------QGFGF 170
G+ VHA I++ +D + + AL++MYA+++ ++ I++R G+
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369
Query: 171 NGGREASVHEVLDKIPE--RNGNVELSSGLAGCNK---------FEKRVVSAGHDADL 217
+G E +V + E + L+S L+GC++ + AG D+
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 427
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L I T +QLH+ K + F+ S L+ +Y V D+ + D L
Sbjct: 394 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W +II +Q+G ++L F M+ G PD F VL +C+
Sbjct: 454 -VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 504
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
L E++ F M + + + +F S++ + L D +GES+HAC+ + G + D+ +NA
Sbjct: 71 LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130
Query: 147 LMNMYAQSQNMD 158
+ MY ++Q+++
Sbjct: 131 FVTMYMKTQSVE 142
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
++++ G P+ F S+LK+C D G+++H +I+ G++ D + N+L+N+YA+
Sbjct: 179 LIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAK 238
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + + + L+ +Y+ F + D+L L +T+ V W +I QN
Sbjct: 94 QLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPD-TNVVTWNGMIAGFVQN 152
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G + E+ F MI +GV PD F S L S T + G+ +H I+R G+ LD++
Sbjct: 153 GFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLK 212
Query: 145 NALMNMYAQSQNMDM 159
+AL+++Y + +++ M
Sbjct: 213 SALIDIYFKCRDVGM 227
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L + T + K+LHA I K R + S ++ +Y + + + +
Sbjct: 277 TLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRM 336
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +II C+QNG E++ F +M G+ D + L +C L G
Sbjct: 337 PEK-DAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG 395
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+++H+ +I+ D +++ +AL++MY + N+ +
Sbjct: 396 KAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSV 429
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L + + Q K++H I + FL S L+ IY V + C +
Sbjct: 176 TFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMA-CKIFKQ 234
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V +II NGL ++L F ++ + P+ SVL +C L G
Sbjct: 235 STNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLG 294
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +HA I++ G+D + +A+M+MYA+ +D+
Sbjct: 295 KELHANILKHGLDERRHVGSAIMDMYAKCGRLDL 328
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K +H+ + K + F S L+ +Y + + C+ D ++ V+W SII
Sbjct: 394 HGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNE-VSWNSIIAAY 452
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L SL F +M+ G+ PDH F ++L +C
Sbjct: 453 GSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSAC 487
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 39 RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98
F+ S L+ +Y + D+ L D + V W ++ + G ++ F M
Sbjct: 7 EFVGSSLIKLYAENGCIEDARRLFDKMPNK-DCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
P+ F SVL C FG +H +I G D NAL+ MY++
Sbjct: 66 NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+T ++ LLK + T S +Q+HA+I + F+IS+ L + N+ + + +
Sbjct: 24 TTSSISTLLK---ACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVF 80
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + +P+ V W + I+ ++N + +++ F+RM S PD +PS++K+C+ +
Sbjct: 81 NGVSSPST-VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+ G + H +R GV D++ +L+++Y + G +V
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKC------------------GEILCARKVF 181
Query: 183 DKIPERNGNVELSSGLAGCNKFEKRV 208
D++ ERN V ++ +AG F V
Sbjct: 182 DEMGERN-VVSWTAMIAGYASFSDLV 206
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW ++I QNG E++ F+ M V PD + S++ +C+ + + V
Sbjct: 283 VAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDY 342
Query: 132 IIRLGVDLD-LYTNNALMNMYAQSQNMD 158
+ + +D+ + AL++M A+ +MD
Sbjct: 343 VRKSSIDVHRAHVIAALIDMNAKCGSMD 370
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+H +I + + L+ +L+ + +++ + + + D L P W +IR
Sbjct: 40 QLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAP-DVFTWNVMIRAF 98
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
T G +L F M+ G PD +P V+ +C G HA I++G DL
Sbjct: 99 TIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDL 158
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLA 199
Y N +MN+Y + +N+D GR +V DK+ RN + SGL
Sbjct: 159 YVQNTMMNLYFKCENVD-------------DGR-----KVFDKMRVRNVFAWTTVISGLV 200
Query: 200 GCNKFE 205
C K +
Sbjct: 201 ACGKLD 206
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I ++ +E+ F RM V P+ S++++CT + + G VH
Sbjct: 221 VSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHD 280
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ G +L+ + AL++MY++ +D
Sbjct: 281 FALKNGFELEPFLGTALIDMYSKCGYLD 308
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
L K +++T +Q LHA I T N ++L+ Y+ + S + T +P
Sbjct: 7 LFKASTTLRTLAQ---LHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSP- 62
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W +++ NG E+++ + +M+ + + FPSVL++C+ D G+ VH
Sbjct: 63 DSFMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVH 122
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
II+ G D+D N AL+++Y + +D
Sbjct: 123 GRIIKSGFDMDPVVNTALLSVYGELGYLD 151
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK H I K N RF+ S L+F+Y + + + + + T W ++I
Sbjct: 219 AKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENV-TYRSTSTWTAMISSYN 277
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL- 141
G L E+L FV M + V P+ +L+SCT L R G+SVH +I+ +D +L
Sbjct: 278 LGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLD 337
Query: 142 YTNNALMNMYAQSQNMDM 159
L+ +YA + D+
Sbjct: 338 CLGPTLLELYAATAKHDL 355
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 25 QLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H + K P ++ + L+ +Y+ V + + D ++ P V W S+I +Q
Sbjct: 424 QIHGHVIK--RPFMDEYVFNSLINMYSKCGYVDLAYMIFDQME-PKGVVTWNSMISGLSQ 480
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NG ++++ F M + F SV+++C+ L G+ +H +I GV ++
Sbjct: 481 NGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFI 540
Query: 144 NNALMNMYAQSQNM 157
AL++MYA+ ++
Sbjct: 541 ETALVDMYAKCGDL 554
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NG + E L F M+ G PD + +V+++C L R +S H I++ G++ D +
Sbjct: 177 ENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRF 236
Query: 143 TNNALMNMYAQ 153
+++L+ MYA+
Sbjct: 237 VDSSLIFMYAK 247
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ +L++ ++ + K +H + K L+ N L LL +Y HD LC
Sbjct: 303 TMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAA-TAKHD-LCEKIL 360
Query: 65 LKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ +A W ++I Q GLL E++ FVRM G PD S L + + +
Sbjct: 361 HEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQ 420
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQGFG 169
G +H +I+ +D Y N+L+NMY++ +D+ I+D+ + G
Sbjct: 421 LGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKG 467
>gi|359475601|ref|XP_003631713.1| PREDICTED: uncharacterized protein LOC100263769 [Vitis vinifera]
Length = 1493
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +Q+G E+L F+ M G P+ + SVL +CT + D +G +HA
Sbjct: 91 VSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHAR 150
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+R+ LD+Y L++MYA+S ++
Sbjct: 151 IVRMEPRLDVYAGCGLIDMYAKSGRLE 177
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDT 64
T ++LK +I+ KQ+HAQIFK + F+ + L+ +Y+ + D L C T
Sbjct: 252 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 311
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K V+W S+I QNG LT F ++ SG PD +L +C L +
Sbjct: 312 PKLDV--VSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKS 369
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +HA I+ G+ N+ + MYA+ ++D
Sbjct: 370 GEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDID 403
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F M G+ P F S+LK+C+ + F G+ +HA I + + D + NAL+
Sbjct: 233 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALV 292
Query: 149 NMYAQSQNMD 158
+Y+ S +++
Sbjct: 293 ELYSLSGSIE 302
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLLVDFRFGESVH 129
V+W S+I + G E L V+M+ G+ + S LK+C G+ +H
Sbjct: 108 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 167
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C ++LG+DLD+ AL++ YA+ +++
Sbjct: 168 GCAVKLGLDLDVVVGTALLDTYAKIGDLE 196
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I TQ G E + F S + D F + L C +D R G +HA
Sbjct: 7 VSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHAL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G+ + N+L++MY + +D
Sbjct: 67 ITVSGLGGPVLLTNSLIDMYCKCGRID 93
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +L ++ +Q+HA KT N + + + +Y + +
Sbjct: 353 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 412
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V+W +I Q+G E++ F M GSG+ P+H F VL +C+
Sbjct: 413 KNP-DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 463
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ + L N F+ S L+ +Y+ + + + + + T V W SII T
Sbjct: 159 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLT 217
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ F +M +G+ P + + S++ SC+ L G +HA +++ G D ++Y
Sbjct: 218 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 277
Query: 143 TNNALMNMYAQSQNMD 158
+AL++MYA+ NMD
Sbjct: 278 VGSALIDMYAKCGNMD 293
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
VH + + D + P+ W +++ Q +++ F RM V PD +L
Sbjct: 90 VHSARAMFDKISRPSV-TTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 148
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SC+ L FG VH+ +R + D++ + L++MY++
Sbjct: 149 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK 187
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + + +++ + + + +Q+HAQ+ K + ++ S L+ +Y + D+
Sbjct: 238 MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 297
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
DT+ VAW +I QNGL +++ F M+ + PD F +VL C+
Sbjct: 298 FFDTMMMK-NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 353
>gi|218201741|gb|EEC84168.1| hypothetical protein OsI_30545 [Oryza sativa Indica Group]
Length = 503
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ + L+ +Y F + D+ + D + V+W ++ +N +++ F M+
Sbjct: 12 FVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 71
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
SG+ P F V+ +CT + G VHA ++R+G + D++T NAL++MY + +D+
Sbjct: 72 SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 131
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + + F + L+ +Y V + + + + + V+W ++I C
Sbjct: 97 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM-PDSDVVSWNALISGCV 155
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG ++ ++M SG+ P+ + S+LK+C F G
Sbjct: 156 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRK--------------S 201
Query: 143 TNNALMNMYAQSQNMD--MHIYD 163
T L++MYA++ +D M ++D
Sbjct: 202 TGVGLVDMYAKNHFLDDAMKVFD 224
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ QNG ++S+ FV M G+ D F +LK C+ L D G +H
Sbjct: 104 VSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGI 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
++R+G D D+ +AL++MYA+ G R V IPE+N +
Sbjct: 164 VVRVGCDTDVVAASALLDMYAK------------------GKRFVESLRVFQGIPEKN-S 204
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 205 VSWSAIIAGC 214
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +LK ++ S Q+H + + S LL +Y +SL +
Sbjct: 139 RTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQG 198
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W +II C QN LL +L F M +++ SVL+SC L + R
Sbjct: 199 IPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 257
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA ++ D A ++MYA+ NM
Sbjct: 258 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNM 290
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y + ++ + D ++ V+W +II QNG E+L FV M+ S + PD
Sbjct: 384 MYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEF 442
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F S+LK+CT +G +H+ I++ G+ + +L++MY++
Sbjct: 443 TFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ + KQ+HAQ+ K + ++ S L+ +Y+ +HDS + +
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK- 621
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W ++I +G E++ F RMI + P+H F S+L++C
Sbjct: 622 SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 673
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII ++ F RM+ G+ PD + +VL +C L G+ +HA
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ + D+Y + L++MY++
Sbjct: 587 VIKKELQSDVYICSTLVDMYSK 608
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S ++L++ ++ QLHA K+ + + L +Y + + D+ L
Sbjct: 237 VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQIL 296
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + ++ ++I +Q ++L F R++ SG+ D V ++C L+
Sbjct: 297 FDNSENLNRQ-SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKG 355
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G ++ I+ + LD+ NA ++MY + Q + + F+ F R+A
Sbjct: 356 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA----LAEAFRVFDEMRRRDAVSWNA 411
Query: 182 LDKIPERNGN 191
+ E+NG
Sbjct: 412 IIAAHEQNGK 421
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA+I + + + LI +L I +++ + + + D L P W +IR
Sbjct: 35 QLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLNDP-DIFTWNVMIRAY 93
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+GL +S+ F MI G PD +P V+ +C FG H I++G D+
Sbjct: 94 NTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAIKMGFWSDV 153
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLA 199
Y N +MN+Y + GG +V DK+ RN + +GL
Sbjct: 154 YVQNNMMNLYFKI-----------------GGDVDDGWKVFDKMRVRNVVSWTTVIAGLV 196
Query: 200 GCNKFE 205
C K +
Sbjct: 197 ACGKLD 202
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +N +++ F RM+ V P+ S++K+CT L + G +H
Sbjct: 217 VSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDF 276
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
++ G +L + AL++MY++ ++D +
Sbjct: 277 ALKNGFELGPFLGTALVDMYSKCGSLDAAV 306
>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T+ +LL+ + ++H I L + + S+L+ +Y++ V + + D
Sbjct: 9 TQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDVEVAHQVFD 68
Query: 64 TL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ K W S+I T++GL +++ + +M GV PD FP VLK+C +
Sbjct: 69 EMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLKACGGIGLI 128
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R GE+VH ++RLG D + NAL++MYA+
Sbjct: 129 RIGEAVHRDLVRLGFANDGFVLNALVDMYAK 159
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + +H + + N F+++ L+ +Y + + + D +
Sbjct: 114 TFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKI 173
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W S++ ++GL+ E+L F M+ G+ D ++L + + F
Sbjct: 174 DCK-DSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILANVS---SFEVA 229
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H I+R G++ D N+L+ +Y+ + +D
Sbjct: 230 VQIHGWIVRRGMEWDFSIANSLIAVYSNGRKLD 262
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +Q+HA++ + FL +RL+ +Y + D+ +LD + + V+W ++I
Sbjct: 60 EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV-VSWTTMISGY 118
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q VE+L F++M+ +G P+ +VL SC+ G+ VH+ +++ + +
Sbjct: 119 SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 178
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MYA+S+N+ V D +PER+
Sbjct: 179 FVGSSLLDMYAKSENIQ------------------EARRVFDTLPERD 208
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ Q KQ+H+ + KT + F+ S LL +Y + ++ + DTL
Sbjct: 145 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 204
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F ++ G+ +H F +++ + + L +G
Sbjct: 205 -PERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 263
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYD--------RFQGFGFNGGRE 175
+ VHA I+R + + N+L++MY++ + ++D + GR
Sbjct: 264 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRH 323
Query: 176 ASVHEVLDKIPE-----RNGNVELSSGLAGCN 202
HEV+ + + +V L + L+GC+
Sbjct: 324 GLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS 355
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K + A+ +H+ + ++ FL++ L+ +Y V D+ + D + T V+W +
Sbjct: 76 KNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPT-RDVVSWTYL 134
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I QN + E+L M+ + P F S LK+ GE +HA ++ +
Sbjct: 135 ITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNL 194
Query: 138 DLDLYTNNALMNMYAQSQNMDMHI 161
D D+Y +AL++MYA+ Q MDM I
Sbjct: 195 DEDVYVGSALLDMYARCQQMDMAI 218
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LK + + +Q+HA K ++ S LL +Y + ++ + D L
Sbjct: 165 TFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I + G +L F M +G H + SV + + G
Sbjct: 225 DSK-NEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR 164
VHA +I+ G L + N ++ MYA+S +M ++DR
Sbjct: 284 RWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDR 324
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ + ++A+ +H I KT F+++ L+ +Y+ ++ + + D L P
Sbjct: 70 LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNL--PR 127
Query: 70 PPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V AW +++ QN + +L F++M+ +G YP + VL +C+ L FG+ V
Sbjct: 128 RNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQV 187
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
HA +I+ +D D N+L + Y++ + ++ I
Sbjct: 188 HAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAI 220
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +L S+++ KQ+HA + K + + L Y+ F + ++
Sbjct: 164 SNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAF 223
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+K ++W S+I C NG SL+ F+ M+ G+ P+ SVL +C +++
Sbjct: 224 KIIKEK-DVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTL 282
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMY 151
G +H+ I+LG + N++M +Y
Sbjct: 283 DLGAQIHSLSIKLGYGSSILIKNSIMYLY 311
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L + T Q+H+ K +S + + ++++Y + ++ L + +
Sbjct: 268 TLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGM 327
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVE-----------SLTCFVRMIGSGVYPDHNVFPSVLK 114
+T V W ++I + L E +L F ++ SG+ PD F SVL
Sbjct: 328 ET-LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLS 386
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C+ LV GE +H II+ GV D+ AL++MY + ++D
Sbjct: 387 VCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSID 430
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLC 60
+ K+ I L+N K+ Q KQ+ +QIF+ R I++L+ + +L + +
Sbjct: 142 TKKSCIECLRN---CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEK 198
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + ++ P+ V + +++ + G+L + L F ++ G++PD +P VLK+ L
Sbjct: 199 IFNYVQDPSLFV-YNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLR 257
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D R GE V I++ G+DLD Y N+L++MY + N++
Sbjct: 258 DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVE 295
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 18/195 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ Q +++ I KT ++ + L+ +Y + V ++ L D + T
Sbjct: 249 VLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEM-TTR 307
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W +I + +++ F M G PD S L +CT L + G+ +
Sbjct: 308 DSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 367
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRF------------QGFGFNGGR 174
H +R + +NAL++MYA+ N+ +I+D G+ N G
Sbjct: 368 HN-YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGY-INCGD 425
Query: 175 EASVHEVLDKIPERN 189
++ DK P R+
Sbjct: 426 LREARDLFDKSPVRD 440
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ LL + Q K +H + + + + L+ +Y+ V SL + L
Sbjct: 478 TVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL 537
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ +W SII NG E+L F M G PD F VL +C+
Sbjct: 538 EDK-DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACS 588
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 22 QAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
Q KQLHA I ++ N+ + ++LL++Y + + D+ L D + PV+W +I
Sbjct: 1097 QIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQK-NPVSWSIMIGG 1155
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G ++ F +I +GV PD+ P V+K+C V G +H +++ G+ LD
Sbjct: 1156 FVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLD 1215
Query: 141 LYTNNALMNMYAQ 153
+ AL++MYA+
Sbjct: 1216 HFVCAALVDMYAK 1228
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ + L+ +Y ++ D+ L D + + V W +I + G ESL F +
Sbjct: 1217 FVCAALVDMYAKCKVIEDAKLLFDVMPSK-DLVTWTVMIGGYAECGNAKESLVLFDHLRE 1275
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G PD S++ +C L VH + R LD+ A+++MYA+ ++D
Sbjct: 1276 EGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVD 1334
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V +W ++ ++GLL E+L + RM+ +GV PD FP VL+SC + D+R
Sbjct: 148 KMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRM 207
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VHA ++R G ++ NALM MYA+
Sbjct: 208 GREVHAHVLRFGFGEEVDVLNALMTMYAK 236
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L++ + +++HA + + +++ L+ +Y V + + D++
Sbjct: 191 TFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSM 250
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I +NG L F+ M+ V P+ SV + LL D F
Sbjct: 251 -TVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFA 309
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA 152
+ +H ++ G D+ N+L+ MYA
Sbjct: 310 KEMHGLAVKRGFAGDVAFCNSLIQMYA 336
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N E+L F M+ V P+ F + L +C R G+ +HA
Sbjct: 458 VSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAH 516
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G++ + Y NAL+++Y +
Sbjct: 517 VLRCGIEYEGYLPNALIDLYVK 538
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ + ++A+ +H I KT F+++ L+ +Y+ ++ + + D L P
Sbjct: 64 LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNL--PR 121
Query: 70 PPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V AW +++ QN + +L F++M+ +G YP + VL +C+ L FG+ V
Sbjct: 122 RNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQV 181
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
HA +I+ +D D N+L + Y++ + ++ I
Sbjct: 182 HAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAI 214
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +L S+++ KQ+HA + K + + L Y+ F + ++
Sbjct: 158 SNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAF 217
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+K ++W S+I C NG SL+ F+ M+ G+ P+ SVL +C +++
Sbjct: 218 KIIKEK-DVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTL 276
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMY 151
G +H+ I+LG + N++M +Y
Sbjct: 277 DLGAQIHSLSIKLGYGSSILIKNSIMYLY 305
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L + T Q+H+ K +S + + ++++Y + ++ L + +
Sbjct: 262 TLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGM 321
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVE-----------SLTCFVRMIGSGVYPDHNVFPSVLK 114
+T V W ++I + L E +L F ++ SG+ PD F SVL
Sbjct: 322 ET-LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLS 380
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C+ LV GE +H II+ GV D+ AL++MY + ++D
Sbjct: 381 VCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSID 424
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCL 61
S +L ++++ VS+++ + HAQI KTL+ P FL + L+ +Y + ++ + +
Sbjct: 5 SQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLI 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L+ L V W ++I QNG V +L F M+ V P+ FP VLK+ T L
Sbjct: 65 LE-LAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ +HA ++ G+ D++ ++ +MY++ GF ++V
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSK--------------LGFLN----DAYKV 165
Query: 182 LDKIPERN 189
D++P RN
Sbjct: 166 FDEMPHRN 173
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ + KQLHA K N F+ + +Y+ ++D+ + D +
Sbjct: 114 VLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRN 173
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W + I +G +S+ F+ ++ G PD F + L +C+ + G +H
Sbjct: 174 LET-WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLH 232
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
IIR G ++ +N L++ Y + ++ ++DR
Sbjct: 233 GFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDR 269
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH I ++ + + + L+ Y V S + D + V+W S+I QN
Sbjct: 230 QLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGE-RNSVSWSSLIAAYVQN 288
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++ F+R + P + SVL +C L + FG SV A ++ V+ +++
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + ++D + + + +PERN
Sbjct: 349 SALVDMYGKCGSID------------------NAEQAFNAMPERN 375
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------------- 49
+T L NLL++ + K K LHA+IF+ FL++RL+ Y
Sbjct: 5 ATHYLANLLQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYFKCKNMGYAHNLF 64
Query: 50 --------NNFNLVHDSLCLLDTLK------TPAPP---VAWKSIIRCCTQNGLLVESLT 92
++N + C L+ + P V+W ++I + L ++L
Sbjct: 65 HQMPHKNIYSWNAILTEYCKAGNLQNAHRLFSEMPERNIVSWNNLISALVRGRLEQQALD 124
Query: 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
+ MI G+ P H S+L +C L++ G H I+++G+D ++Y +NAL+++Y+
Sbjct: 125 VYNEMIWEGLMPTHFTLASILSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYS 184
Query: 153 Q 153
+
Sbjct: 185 K 185
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H I K N+ ++ + LL +Y+ LV D++ L + +
Sbjct: 140 TLASILSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEM 199
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL------- 118
+ P V + +++ TQ +VE+L F M G+ D SVL CT
Sbjct: 200 QEP-NEVTYTAMMSGFTQTDRVVEALEMFRLMCRQGICIDSVSLSSVLGVCTKGGCGESD 258
Query: 119 ----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G+ H I+LG + DL+ N+L++MYA+ +MD
Sbjct: 259 QSDGSLRNALGKLAHGLAIKLGFESDLHLCNSLLDMYAKDGDMD 302
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ KQ+HA K ++ S L+ +Y+ + + C+ +
Sbjct: 419 TLAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKI 478
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I + N L E+L F +M SG+ P + ++L C L G
Sbjct: 479 -SKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLSSLIHG 537
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA I + G D+Y +AL++MY +
Sbjct: 538 KQIHAQIAKEGFVNDVYVGSALVDMYCK 565
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F M V PD +L SC + G+ VHA + D+Y + L+
Sbjct: 400 EAIKLFREMQFQNVKPDRTTLAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLI 459
Query: 149 NMYAQSQNMDM 159
MY++ MD+
Sbjct: 460 GMYSKCGKMDI 470
>gi|296085625|emb|CBI29414.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S KTL+ K+ +I K A + IF N++ + S Y + + +
Sbjct: 9 SLKTLLITSKDEPTI-AKIHALMILTGIFGHGNSNAKLIQS-----YARLGHIESARQVF 62
Query: 63 DTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D K+P V AW ++I ++ G + E+L+ + RM GV PD + + VLK+CT +D
Sbjct: 63 D--KSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLD 120
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
R GE + G D++ A++N+YA+ MD M ++D+
Sbjct: 121 LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKM 166
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ + +L +Y + +++ + D + V W ++I QNG E++ + +M
Sbjct: 141 FVGAAVLNLYAKCGKMDEAMRVFDKMGRR-DLVCWTTMITGLAQNGQAREAVDIYRQMHK 199
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
V D V ++++CT L + G S+H +IR + +D+ L + + + M
Sbjct: 200 KRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIIMQVLGKLDYEMKAM-- 257
Query: 160 HIYDRFQGFGFNGGREASVHEVLDKIPER 188
G+ E +H + +++ ER
Sbjct: 258 ---------GYVPKTEFVLHNLEEEVKER 277
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCL 61
S +L ++++ VS+++ + HAQI KTL+ P FL + L+ +Y + ++ + +
Sbjct: 5 SQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLI 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L+ L V W ++I QNG V +L F M+ V P+ FP VLK+ T L
Sbjct: 65 LE-LAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ +HA ++ G+ D++ ++ +MY++ GF ++V
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSK--------------LGFLN----DAYKV 165
Query: 182 LDKIPERN 189
D++P RN
Sbjct: 166 FDEMPHRN 173
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ + KQLHA K N F+ + +Y+ ++D+ + D +
Sbjct: 114 VLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRN 173
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
W + I +G +S+ F+ ++ G PD F L +C+ + G +H
Sbjct: 174 LET-WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLH 232
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
IIR G ++ +N L++ Y + ++ ++DR
Sbjct: 233 GFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDR 269
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH I ++ + + + L+ Y V S + D + V+W S+I QN
Sbjct: 230 QLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGE-RNSVSWSSLIAAYVQN 288
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++ F+R + P + SVL +C L + FG SV A ++ V+ +++
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + ++D + + + +PERN
Sbjct: 349 SALVDMYGKCGSID------------------NAEQAFNAMPERN 375
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +Q+HA++ + FL +RL+ +Y + D+ +LD + + V+W ++I
Sbjct: 28 EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV-VSWTTMISGY 86
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q VE+L F++M+ +G P+ +VL SC+ G+ VH+ +++ + +
Sbjct: 87 SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 146
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MYA+S+N+ V D +PER+
Sbjct: 147 FVGSSLLDMYAKSENIQ------------------EARRVFDTLPERD 176
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ Q KQ+H+ + KT + F+ S LL +Y + ++ + DTL
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F ++ G+ +H F +++ + + L +G
Sbjct: 173 P-ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYD--------RFQGFGFNGGRE 175
+ VHA I+R + + N+L++MY++ + ++D + GR
Sbjct: 232 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRH 291
Query: 176 ASVHEVLDKIPE-----RNGNVELSSGLAGCN 202
HEV+ + + +V L + L+GC+
Sbjct: 292 GLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS 323
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ + L N F+ S L+ +Y+ + + + + + T V W SII T
Sbjct: 436 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLT 494
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ F +M +G+ P + + S++ SC+ L G +HA +++ G D ++Y
Sbjct: 495 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 554
Query: 143 TNNALMNMYAQSQNMD 158
+AL++MYA+ NMD
Sbjct: 555 VGSALIDMYAKCGNMD 570
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L + ++ H K ++F+ + LL +Y V D++ L +
Sbjct: 143 TLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGM 202
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--------T 117
P V++ +++ Q G + ++L F RM SGV D SVL +C +
Sbjct: 203 ARP-NEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYS 261
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ FR G+++HA ++R G D + N+L++MY + MD
Sbjct: 262 VARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMD 302
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQN-GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I ++ G E++ + RM G+ P H SVL +C L G H
Sbjct: 106 VSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHG 165
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+++G+D + + NAL+ MY +
Sbjct: 166 VAVKVGLDANQFVENALLGMYTK 188
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
EPN S LL VH + + D + P+ W +++ Q +++
Sbjct: 347 FEPN-EVTYSNLLASCIKARDVHSARAMFDKISRPSV-TTWNTLLSGYCQEEQHQDTIEL 404
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F RM V PD +L SC+ L FG VH+ +R + D++ + L++MY++
Sbjct: 405 FRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK 464
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + + +++ + + + +Q+HAQ+ K + ++ S L+ +Y + D+
Sbjct: 515 MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 574
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
DT+ VAW +I QNGL +++ F M+ + PD F +VL C+
Sbjct: 575 FFDTMMMK-NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 630
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +N+L S+ + KQ+HA I ++ + + + L +Y D+ + + L
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +AW ++IR +G L E+ F RM+ GV PD + +VL +C G
Sbjct: 292 -SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARG 350
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
+ +HA + G+ D+ NAL+NMY+++ +M ++DR
Sbjct: 351 KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRM 392
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+ LL++ V K + KQ+H I + ++PN ++ + LL +Y + V+++ L D
Sbjct: 32 VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNV-YITNTLLKLYAHCGSVNEARQLFDKFS 90
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ V+W +I GL E+ F M + PD F S+L +C+ +G
Sbjct: 91 NKSV-VSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGR 149
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H ++ G+ D NAL++MYA+
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAK 176
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 21 SQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
++ K++HA+ K L + RF + L+ +Y+ + D+ + D + V+W +++
Sbjct: 348 ARGKEIHARAAKDGLVSDVRFG-NALINMYSKAGSMKDARQVFDRM-PKRDVVSWTTLLG 405
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+VES T F +M+ GV + + VLK+C+ V ++G+ +HA +++ G+
Sbjct: 406 RYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLA 465
Query: 140 DLYTNNALMNMY 151
DL NALM+MY
Sbjct: 466 DLAVTNALMSMY 477
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L S + +++H ++ + N + + L+ +Y V D+ + D +
Sbjct: 131 TFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAM 190
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++ ++G ESL + M+ V P + +VL +C L G
Sbjct: 191 ASR-DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +HA I+ D+ + AL MY
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMY 275
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDRF 165
+ +L+SC D G+ VH I+R GV ++Y N L+ +YA S N ++D+F
Sbjct: 31 YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKF 89
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
++ NPV++K K++HA++ K + + L+ +Y V D++ + + +
Sbjct: 438 VLKACSNPVALK---WGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM- 493
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ V W ++I QNG +E+L + M G+ P+ F +VL +C +
Sbjct: 494 SMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRV 545
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +Q+HA++ + FL +RL+ +Y + D+ +LD + + V+W ++I
Sbjct: 28 EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV-VSWTTMISGY 86
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q VE+L F++M+ +G P+ +VL SC+ G+ VH+ +++ + +
Sbjct: 87 SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 146
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MYA+S+N+ V D +PER+
Sbjct: 147 FVGSSLLDMYAKSENIQ------------------EARRVFDTLPERD 176
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ Q KQ+H+ + KT + F+ S LL +Y + ++ + DTL
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F ++ G+ +H F +++ + + L +G
Sbjct: 173 P-ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYD--------RFQGFGFNGGRE 175
+ VHA I+R + + N+L++MY++ + ++D + GR
Sbjct: 232 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRH 291
Query: 176 ASVHEVLDKIPE-----RNGNVELSSGLAGCN 202
HEV+ + + +V L + L+GC+
Sbjct: 292 GLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS 323
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 25 QLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H I K L+ + FL LL +Y D+ L P + W ++I Q
Sbjct: 508 QIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQ 567
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L + M PD F SVL++C +L G +H+ I R G+DLD T
Sbjct: 568 NNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDEST 627
Query: 144 NNALMNMYAQ 153
+AL++MYA+
Sbjct: 628 CSALIDMYAK 637
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ +QLH+ I K ++ F+ + L+ +Y + D+ + +
Sbjct: 288 TYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELM 347
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K+ V+W +II Q VE+ F +M G+ PD S+L +C + F G
Sbjct: 348 KSR-DNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQG 406
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H ++ G++ LY ++L++MYA+
Sbjct: 407 KPIHCLSVKSGLETSLYAGSSLIDMYAK 434
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T + +L+ V +A ++ Q+ K + ++ Y + D+L L
Sbjct: 84 TVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALGRLDDALGLFF 143
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ P VAW +I Q G +S+ F M +G+ + SVL + L D
Sbjct: 144 QMPNP-NVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLD 202
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
FG VHA I+ G+D ++Y ++L+NMYA+ + ++ + +V D
Sbjct: 203 FGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELE------------------AAKKVFD 244
Query: 184 KIPERN 189
I ERN
Sbjct: 245 PIDERN 250
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ TL ++L S+ +HA+ K ++ ++ S L+ +Y + + +
Sbjct: 183 STRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKV 242
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + V W +++ QNG E + M G +PD + S+L +C L
Sbjct: 243 FDPID-ERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEH 301
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
G +H+ II+ +L+ NAL++MYA+S
Sbjct: 302 VEGGRQLHSIIIKNKFASNLFVGNALIDMYAKS 334
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
L C+ + G++P+ F VL C L FG VH +++LG + + AL++M
Sbjct: 3 LKCYGLLWSHGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDM 62
Query: 151 YAQSQNM 157
YA++ M
Sbjct: 63 YAKNNRM 69
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L+ + + +++H+ IF+T S L+ +Y V S+ + + +
Sbjct: 592 TFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDM 651
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ ++W S+I +NG +L F M + V PD F VL +C+
Sbjct: 652 HSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACS 703
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+T ++ LLK + T S +Q+HA+I + F+IS+ L + N+ + + +
Sbjct: 72 TTSSISTLLK---ACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVF 128
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + +P+ V W + I+ ++N + +++ F+RM S PD +PS++K+C+ +
Sbjct: 129 NGVSSPST-VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 187
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+ G + H +R GV D++ +L+++Y + G +V
Sbjct: 188 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKC------------------GEILCARKVF 229
Query: 183 DKIPERNGNVELSSGLAGCNKFEKRV 208
D++ ERN V ++ +AG F V
Sbjct: 230 DEMGERN-VVSWTAMIAGYASFSDLV 254
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDT 64
T ++LK +I+ KQ+HAQIFK + F+ + L+ +Y+ + D L C T
Sbjct: 331 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 390
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K V+W S+I QNG LT F ++ SG PD +L +C L +
Sbjct: 391 PKLDV--VSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKS 448
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +HA I+ G+ N+ + MYA+ ++D
Sbjct: 449 GEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDID 482
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K H + KT FL++ LL++Y + L D + V+W S+I
Sbjct: 37 HGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPK-RNVVSWNSLISGY 95
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
TQ G E + F S + D F + L C +D R G +HA I G+ +
Sbjct: 96 TQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPV 155
Query: 142 YTNNALMNMYAQSQNMD 158
N+L++MY + +D
Sbjct: 156 LLTNSLIDMYCKCGRID 172
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F M G+ P F S+LK+C+ + F G+ +HA I + + D + NAL+
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALV 371
Query: 149 NMYAQSQNMD 158
+Y+ S +++
Sbjct: 372 ELYSLSGSIE 381
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLLVDFRFGESVH 129
V+W S+I + G E L V+M+ G+ + S LK+C G+ +H
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C ++LG+DLD+ AL++ YA+ +++
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLE 275
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +L ++ +Q+HA KT N + + + +Y + +
Sbjct: 432 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 491
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V+W +I Q+G E++ F M GSG+ P+H F VL +C+
Sbjct: 492 KNP-DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 542
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + K F+ + L+ +Y F + + L + + + VAW +II C
Sbjct: 70 GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEM-PKSYLVAWNTIIDCNV 128
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E++ F RM+ SG+ PD F L +C L + G VH+CI G+ +
Sbjct: 129 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 188
Query: 143 TNNALMNMYAQSQNMD--MHIYDRFQG 167
+N+L++MYA+ ++ I+++ +G
Sbjct: 189 VSNSLIDMYAKCGVVEAAYEIFNKMKG 215
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN--SRFLISRLLFIYNNFNLVHDSLCLL 62
+ L++LL++ V + QAK +H + K+ N S L++ + Y+ + + D+ C L
Sbjct: 69 QPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDI-DAACRL 127
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ +W +I +NGL ++ F M G++PD + +L+ C L
Sbjct: 128 FDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSI 187
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA I+ G + + AL+NMYA+ Q ++
Sbjct: 188 ELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIE 223
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HAQI + F+ + LL +Y + DS + +T+ T V+W ++I T N
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-TEVNVVSWNAMITGFTSND 251
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
L +++ F+RM+G GV PD F V K+ +L D + V + LGVD +
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311
Query: 146 ALMNM 150
AL++M
Sbjct: 312 ALIDM 316
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T ++ ++K S K++HA+ K+ LE N + + + Y + D + +
Sbjct: 377 TYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNR 436
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ ++W S++ +Q +++ F M G+ P+ F SVL SC L +
Sbjct: 437 ME-DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH I ++G+D+D +AL++MYA+
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAK 524
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
T + AP W ++I ++G ++L F +M + +Y DH + SV + L
Sbjct: 336 TCRFNAP---WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLS 392
Query: 124 FGESVHACIIRLGVDLDLYT-NNALMNMYAQSQNMD 158
G+ VHA I+ G++++ + +NA+ N YA+ +++
Sbjct: 393 LGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLE 428
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H I K + + S L+ +Y + D+ + + + + A V+W +II
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI-SNADTVSWTAIIAGHA 554
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+G++ ++L F RM+ GV P+ F VL +C+
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H K ++F+ + LL +Y V D++ L D +
Sbjct: 144 TLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWM 203
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-------- 117
+P V++ +++ Q+G + ++L F RM S + D SVL +C
Sbjct: 204 SSP-NEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYN 262
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ--------- 166
+ R +S+HA ++R G D D + N+L++MYA+ MD M +++
Sbjct: 263 VARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNI 322
Query: 167 ---GFGFNGGREASVHEVLDKIPERN---GNVELSSGLAGCNK 203
G+G G E ++ EVLD + E V S+ LA C K
Sbjct: 323 LVTGYGQLGCYERAL-EVLDLMQESGFEPNEVTYSNMLASCIK 364
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H+ K L N F+ S L+ +Y+ V + + + + T V W S+I
Sbjct: 437 GKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMM-TERDVVCWNSMISGLA 495
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ F +M +G++P + + S++ SC L G +HA +++ G D ++Y
Sbjct: 496 IHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVY 555
Query: 143 TNNALMNMYAQSQNMD 158
++L++MYA+ NMD
Sbjct: 556 VGSSLIDMYAKCGNMD 571
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
V + + D + P+ W +++ Q L +++ F RM V PD +L
Sbjct: 368 VPSARAMFDKISKPSV-TTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILS 426
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+C+ L G+ VH+ ++L + D++ + L++MY++
Sbjct: 427 TCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSK 465
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I ++ E+L + M+ G+ P + SVL +C + G H
Sbjct: 108 VSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGL 167
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++G+D + + N L+ MY +
Sbjct: 168 AVKVGLDGNQFVENGLLGMYTK 189
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 21/200 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S ++IN SI Q +Q+HAQ+ K + ++ S L+ +Y + D+
Sbjct: 520 SSYASMINSCARLSSIP---QGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLF 576
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ + VAW +I QNG +++ F M+ + PD F +VL C+
Sbjct: 577 FNCMIVK-NIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCS---- 631
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
H+ + VD + N++ + Y ++ H G GR A V V
Sbjct: 632 -------HSGL----VDEAIAYFNSMESNYGIRPLVE-HYTCLIDALG-RAGRFAEVVAV 678
Query: 182 LDKIPERNGNVELSSGLAGC 201
+DK+P ++ + LA C
Sbjct: 679 IDKMPYKDDAILWEVLLAAC 698
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S KTL+ K+ +I K A + IF N++ + S Y + + +
Sbjct: 9 SLKTLLITSKDEPTI-AKIHALMILTGIFGHGNSNAKLIQS-----YARLGHIESARQVF 62
Query: 63 DTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D K+P V AW ++I ++ G + E+L+ + RM GV PD + + VLK+CT +D
Sbjct: 63 D--KSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLD 120
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
R GE + G D++ A++N+YA+ MD M ++D+
Sbjct: 121 LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKM 166
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I QNG E++ + +M V D V ++++CT L + G S+H
Sbjct: 172 VCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGY 231
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+IR + +D+ +L++MYA++ ++++
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLEL 259
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QNG +L V M G PD SVL +C+ + + G+SVH
Sbjct: 273 ISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGY 332
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+R + D ++ A+++MY++
Sbjct: 333 IVRR-LHFDCVSSTAVIDMYSK 353
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK +K KQ+H + + F+ + L+ +Y + DS L D +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++ C Q E++ F M+ SG+ P+ S++ +CT L D G
Sbjct: 219 -PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H +I+LG D D ++ NAL++MYA+
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAK 305
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL + K+ Q+HA I K+ + + + L+ +Y+ + L+D P
Sbjct: 61 KLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEP 120
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I QNGL +L F M GV + F SVLK+C+++ D R G+ V
Sbjct: 121 -DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H ++ G + D++ N L+ MYA+ D F + R + D+IPER
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKC--------DEF----LDSKR------LFDEIPER 221
Query: 189 N 189
N
Sbjct: 222 N 222
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ ++ +Q+H K+ + ++++ L+ Y + V D+ + +
Sbjct: 435 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 494
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V++ S+I Q G E+L F+ M + PD V S+L +C L F G
Sbjct: 495 -TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG 553
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I++ G LD++ N+L+NMYA+ ++D
Sbjct: 554 KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH+ + K + F+ L+ +Y+ +L+ D+ + L +AW +II +Q
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAIISGYSQ 410
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+E+L+ FV M G+ + ++LKS L VH ++ G D+Y
Sbjct: 411 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 470
Query: 144 NNALMNMYAQSQNMD 158
N+L++ Y + +++
Sbjct: 471 VNSLIDSYGKCSHVE 485
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL ++ Q KQLH I K F + L+ +Y + D+ L T
Sbjct: 539 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSEL-TE 597
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G ++L F +M+ GV P+H SVL +C
Sbjct: 598 RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGAC 645
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ + L N F+ S L+ +Y+ + + + + + T V W SII T
Sbjct: 143 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLT 201
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ F +M +G+ P + + S++ SC+ L G +HA +++ G D ++Y
Sbjct: 202 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 261
Query: 143 TNNALMNMYAQSQNMD 158
+AL++MYA+ NMD
Sbjct: 262 VGSALIDMYAKCGNMD 277
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
VH + + D + P+ W +++ Q +++ F RM V PD +L
Sbjct: 74 VHSARAMFDKISRPSV-TTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 132
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SC+ L FG VH+ +R + D++ + L++MY++
Sbjct: 133 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK 171
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + + +++ + + + +Q+HAQ+ K + ++ S L+ +Y + D+
Sbjct: 222 MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 281
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
DT+ VAW +I QNGL +++ F M+ + PD F +VL C+
Sbjct: 282 FFDTMMMK-NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 337
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN--SRFLISRLLFIYNNFNLVHDSLCLL 62
+ L++LL++ V + QAK +H + K+ N S L++ + Y+ + + D+ C L
Sbjct: 69 QPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDI-DAACRL 127
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ +W +I +NGL ++ F M G++PD + +L+ C L
Sbjct: 128 FDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSI 187
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA I+ G + + AL+NMYA+ Q ++
Sbjct: 188 ELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIE 223
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HAQI + F+ + LL +Y + DS + +T+ T V+W ++I T N
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-TEVNVVSWNAMITGFTSND 251
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
L +++ F+RM+G GV PD F V K+ +L D + V + LGVD +
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311
Query: 146 ALMNM 150
AL++M
Sbjct: 312 ALIDM 316
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T ++ ++K S K++HA+ K+ LE N + + + Y + D + +
Sbjct: 377 TYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNR 436
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ ++W S++ +Q +++ F M G+ P+ F SVL SC L +
Sbjct: 437 ME-DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH I ++G+D+D +AL++MYA+
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAK 524
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
T + AP W ++I ++G ++L F +M + +Y DH + SV + L
Sbjct: 336 TCRFNAP---WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLS 392
Query: 124 FGESVHACIIRLGVDLDLYT-NNALMNMYAQSQNMD 158
G+ VHA I+ G++++ + +NA+ N YA+ +++
Sbjct: 393 LGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLE 428
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H I K + + S L+ +Y + D+ + + + + A V+W +II
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI-SNADTVSWTAIIAGHA 554
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+G++ ++L F RM+ GV P+ F VL +C+
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTL 65
+ +LL + ++ + QLH I K+ + + L+ Y+ L DS D+
Sbjct: 18 ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ A W SII C QN L SL +M+ + PD +V PS KSC +L G
Sbjct: 78 QKSA--TTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIG 135
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+SVH ++ G D D++ ++L++MYA+
Sbjct: 136 KSVHCLSMKTGYDADVFVGSSLVDMYAK 163
>gi|357117625|ref|XP_003560564.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Brachypodium distachyon]
Length = 435
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T LL+ V+ + K++HA++ T + ++ ++LL Y + + L D
Sbjct: 35 SRTYALLLQECVNRRDARVGKRIHARMISTGFNCNDYMATKLLIFYAKIGELGVARNLFD 94
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ VAW ++I CT+ GL ++L F M G+ PD F SVL +C L +
Sbjct: 95 GMPRRGV-VAWNALISGCTRGGLESQALEMFGSMRAEGLRPDQFTFSSVLCACARLAALQ 153
Query: 124 FGESVHACIIRLG-VDLDLYTNNALMNMY 151
G VH +++ V +++ N+AL++MY
Sbjct: 154 HGWRVHGVMVKSDVVGGNVFANSALVDMY 182
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
K Q+H ++ + ++ FL+++L+ +N + + L D P W +IIR
Sbjct: 69 KRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYP-DVFMWNAIIR 127
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
++N + +++ + M +GV+PD FP VLK+CT L+DF +H II+ G
Sbjct: 128 SYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGS 187
Query: 140 DLYTNNALMNMYAQ 153
D++ N L+ +YA+
Sbjct: 188 DVFVQNGLVALYAK 201
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H QI K + F+ + L+ +Y + + + D L V+W SII QNG
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTI-VSWTSIISGYAQNG 234
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
VE+L F +M +GV PD S+L++ T + D G S+H +I++G++
Sbjct: 235 KAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLE 287
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L+ + Q + +H + K LE LIS F Y LV + D
Sbjct: 257 ALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF-YAKCGLVTVAKSFFDQ 315
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+KT + W ++I +NG E++ F MI + PD S + + +
Sbjct: 316 MKT-TNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLEL 374
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR------------FQGFGF 170
+ + + + D++ N +L++MYA+ +++ ++DR G+G
Sbjct: 375 AQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGL 434
Query: 171 NG-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
+G G EA +++ V+ + +V L CN
Sbjct: 435 HGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACN 468
>gi|302761950|ref|XP_002964397.1| hypothetical protein SELMODRAFT_82011 [Selaginella moellendorffii]
gi|300168126|gb|EFJ34730.1| hypothetical protein SELMODRAFT_82011 [Selaginella moellendorffii]
Length = 376
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 4 TKTLINLLKNPVSIKTKS--QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T N+L+ ++ KS Q + +H+QI ++ ++ L++RL+++Y + +++ L
Sbjct: 46 ASTFKNILRACTGLEEKSLPQGRLVHSQILESGLGSNLALVNRLVYLYGSSGCFEEAMDL 105
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
LD + P V W +++ +Q G ++L F R GV P F S + +C+ D
Sbjct: 106 LDRMNPP-EDVPWNAMVAALSQRGKNRQALELFNRTSLEGVKPSGVTFVSGIDACSDGGD 164
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G ++HA + G D L+NMY + N++
Sbjct: 165 EQQGRAIHARALEAGFGSDEVVTGCLINMYGKCGNLE 201
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF--GESVHA 130
+W S+IR ++ +L ++ + G PD + F ++L++CT L + G VH+
Sbjct: 13 SWTSMIRAYVEHEEFDLALEIYMEFLVEGGKPDASTFKNILRACTGLEEKSLPQGRLVHS 72
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
I+ G+ +L N L+ +Y S + M + DR
Sbjct: 73 QILESGLGSNLALVNRLVYLYGSSGCFEEAMDLLDRM 109
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + ++ + + + L+ +Y D+ + D + V+W S+I C
Sbjct: 170 GEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPE-RNVVSWNSLITCYE 228
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDL 141
QNG + E+L FV M+ +G +PD SV+ +C L R G VHA ++ R + D+
Sbjct: 229 QNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDM 288
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
NNAL++MYA+ GR + D +P R+ V +S LAG
Sbjct: 289 VLNNALVDMYAKC------------------GRTWEARCIFDSMPSRS-VVSETSILAGY 329
Query: 202 NK 203
K
Sbjct: 330 AK 331
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW +I QNG E++ FV++ ++P H + +VL +C + + G+ H
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVH 410
Query: 132 IIR------LGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + D++ N+L++MY ++ ++D
Sbjct: 411 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 32/193 (16%)
Query: 10 LLKNPVS---------IKTKSQAKQLHA--QIFKTLEPNSRFLISRLLFIYNNFNLVHDS 58
+LK+PV+ + T ++ +L ++F + + F + LL Y ++
Sbjct: 43 VLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEA 102
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
L + + P ++ +++ ++G ++L M + F S L +C
Sbjct: 103 RALFEAIPDP-DQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSAC 161
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA 176
D R GE VH + R D++ AL++MYA+ + R
Sbjct: 162 AAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE------------------RPV 203
Query: 177 SVHEVLDKIPERN 189
V D +PERN
Sbjct: 204 DARRVFDAMPERN 216
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V +W ++ + GLL E+L + RM+ +GV PD FP VL+SC + D+R
Sbjct: 154 KMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRM 213
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VHA ++R G ++ NALM MYA+
Sbjct: 214 GREVHAHVLRFGFAEEVDVLNALMTMYAK 242
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN------FNLVHDSLCLLD 63
+L++ + +++HA + + +++ L+ +Y V DS+ ++D
Sbjct: 201 VLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMD 260
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++W ++I +NG L F+ M+ V P+ SV + LL D
Sbjct: 261 C-------ISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDIT 313
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYA 152
F + +H ++ G D+ N+L+ MYA
Sbjct: 314 FAKEMHGLAVKRGFATDVAFCNSLIQMYA 342
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N E+L F M+ V P+ F + L +C R G+ +HA
Sbjct: 464 VSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAH 522
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ + Y NAL+++Y +
Sbjct: 523 VLRCGIAYEGYLPNALIDLYVK 544
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 28 AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSIIRCCTQN 84
+Q+F ++ + +F + V SL L LK V+W S+I CC+QN
Sbjct: 305 SQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQN 364
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G +E+L F M +GV P+ P +L +C + G++ H +R G+ D+Y
Sbjct: 365 GRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424
Query: 145 NALMNMYAQ 153
+AL++MYA+
Sbjct: 425 SALIDMYAK 433
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ N L + + + SQ +Q HA I KT N L ++LL Y N D+ +LD +
Sbjct: 17 TIFNCLNSTTA--SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV 74
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P P V ++ ++I ++ +L+ F +M+ G+ PD+ V PS +K+C L +
Sbjct: 75 --PEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKP 132
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ-SQNMDMH-IYDRF 165
VH G D D + ++L++MY + +Q D H ++DR
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM 175
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I +GL E++ F+ M G PD SVL + L D G +H
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ G+ D ++AL++MY +
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGK 297
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---NFNLVHD 57
+T+ + +NLL S+ + ++ QL AQI N ++S+L++ ++ NL H
Sbjct: 7 LTNKQQCLNLLN---SLHSITKLHQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHA 63
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P+P ++W +IR + +ES+ F +M +GV P+ +P + KSC
Sbjct: 64 RKLVFHFSNNPSP-ISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCA 122
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
+ + G+ VHA +++ G+D D+Y N ++N Y
Sbjct: 123 MALVLCEGKQVHADLVKFGLDSDVYVCNNMINFYG 157
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYN------NFNLVHDSLCLLDTLKTPAPPVAWK 75
+ KQ+HA + K + ++ + ++ Y V D +C+ V+W
Sbjct: 129 EGKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTI-------VSWN 181
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S++ C +N L + + F +M PD +L C L G VH+ +I
Sbjct: 182 SVMTACVENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILK 241
Query: 136 GVDLDLYTNNALMNMYAQS 154
G+ L ++ AL++MY +S
Sbjct: 242 GMVLSVHLGTALVDMYGKS 260
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKS 76
K+ + A+ H Q+ P+ + ++ +Y FN +L +L L + V W
Sbjct: 59 KSLASAELTHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQ 115
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR G L + L + RM G PDH FP VLK+C + FR G SVHA + G
Sbjct: 116 LIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG 175
Query: 137 VDLDLYTNNALMNMYAQ 153
+ +++ N L++MY +
Sbjct: 176 FEWNVFVGNGLVSMYGR 192
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I + +HA +F + + F+ + L+ +Y ++ + D ++
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 210
Query: 70 PP--VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGE 126
V+W SI+ Q G + ++ F RM G+ PD +VL +C + + G+
Sbjct: 211 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 270
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH +R G+ D++ NA+++MYA+ M+
Sbjct: 271 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMME 302
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL------EPNSRFL-ISRLLFIYNNFNLVHDS 58
TL++LL S T K+ H K + +P + I+ L+ +Y+ +
Sbjct: 388 TLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAA 447
Query: 59 LCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV- 112
+ D + PP V W +I Q+G E+L F +M+ PD+ V P+
Sbjct: 448 RAMFDLI----PPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAF 499
Query: 113 -----LKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMD 158
L +C L RFG +HA ++R + L+ N L++MY++S ++D
Sbjct: 500 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 551
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 41/192 (21%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-------------------------------QIFKTL 34
+L+N+L S+ S+ KQ+H ++F+ +
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311
Query: 35 EPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESL 91
+ + ++ Y+ D+L L + + K V W ++I Q GL E+L
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-------DLYTN 144
F +M+ G P+ S+L C G+ H I+ ++L DL
Sbjct: 372 DVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 431
Query: 145 NALMNMYAQSQN 156
NAL++MY++ ++
Sbjct: 432 NALIDMYSKCKS 443
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + K F+ + L+ +Y F + + L + + + VAW +II C
Sbjct: 170 GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEM-PKSYLVAWNTIIDCNV 228
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E++ F RM+ SG+ PD F L +C L + G VH+CI G+ +
Sbjct: 229 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 288
Query: 143 TNNALMNMYAQSQNMD--MHIYDRFQG 167
+N+L++MYA+ ++ I+++ +G
Sbjct: 289 VSNSLIDMYAKCGVVEAAYEIFNKMKG 315
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/145 (17%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+QLHA + +T + F++ +++ + + +L + ++ P W ++IR
Sbjct: 68 EQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENP-DGFLWNTMIRGL 126
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ ++ + RM G D+ + ++K C L G+ +H +++ G++ +
Sbjct: 127 GRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHV 186
Query: 142 YTNNALMNMYAQSQNMD--MHIYDR 164
+ N L++MY ++++ H+++
Sbjct: 187 FVRNTLVHMYGMFKDIEAATHLFEE 211
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K S+ +QLHA + K+ + L+ +Y NL+ D+L + +
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRM 225
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRF 124
T ++W S+I +Q G +E+L F M+ GVY P+ +F SV +C+ L+ +
Sbjct: 226 ATR-DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEY 284
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H I+ G+ D++ +L +MYA+
Sbjct: 285 GRQLHGMSIKFGLGRDVFAGCSLCDMYAK 313
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ K++H + K+ L + +L +Y + D+ + D + V+W S
Sbjct: 76 LRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAM-PERNVVSWTS 134
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I +QNG +L + +M+ SGV PD F S++K+C+ L D G +HA +++
Sbjct: 135 VIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSE 194
Query: 137 VDLDLYTNNALMNMYAQS 154
+ NAL++MY +S
Sbjct: 195 FGAHIIAQNALISMYTKS 212
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II G E++ F +M G+ PD S+L +CT + G VH
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGY 392
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
I ++G+DLD+ N L+ MYA+ + I+
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAKCSELRDAIF 423
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S Q Q+H I K + + LL +Y + + D++ + +
Sbjct: 369 TVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEM 428
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ A V+W +I+ C ++ E M S PD+ +VL + V G
Sbjct: 429 RCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIG 488
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++ G++ D N L+++YA+
Sbjct: 489 NQVHCYALKTGLNCDTSVTNGLIDLYAK 516
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ QNG ++S+ FV M +G D F +LK C+ L D G +H
Sbjct: 104 VSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGV 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
++R+G D D+ +AL++MYA+ G R V IPE+N +
Sbjct: 164 VVRVGCDTDVVAASALLDMYAK------------------GKRFVESLRVFQGIPEKN-S 204
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 205 VSWSAIIAGC 214
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +LK ++ S Q+H + + S LL +Y +SL +
Sbjct: 139 RTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQG 198
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W +II C QN LL +L F M +++ SVL+SC L + R
Sbjct: 199 IPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 257
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA ++ D A ++MYA+ NM
Sbjct: 258 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNM 290
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y + ++ + D ++ V+W +II QNG E+L FV M+ S + PD
Sbjct: 384 MYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEF 442
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F SVLK+CT +G +H+ I++ G+ + +L++MY++
Sbjct: 443 TFGSVLKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII ++ F RM+ G+ PD + +VL +C L G+ +HA
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ + D+Y ++ L++MY++
Sbjct: 587 VIKKELQSDVYISSTLVDMYSK 608
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ + KQ+HAQ+ K + ++ S L+ +Y+ +HDS + +
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEK- 621
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W ++I +G E++ F RMI + P+H F S+L++C
Sbjct: 622 SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 673
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S ++L++ ++ QLHA K+ + + L +Y + + D+ L
Sbjct: 237 VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQIL 296
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + ++ ++I +Q ++L F R++ SG+ D V ++C L+
Sbjct: 297 FDKSENLNRQ-SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKG 355
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G ++ I+ + LD+ NA ++MY + Q + + F+ F R+A
Sbjct: 356 LSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQA----LAEAFRVFDEMRRRDAVSWNA 411
Query: 182 LDKIPERNGN 191
+ E+NG
Sbjct: 412 IIAAHEQNGK 421
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---NFNLVHDSLCLL 62
T+ +LL S+ + KQLH+ + K + + LL +Y + H+
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+T V W ++ Q G L ES F++M G+ P+ +PS+L++CT L
Sbjct: 376 ETENV----VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +H +I+ G ++Y + L++MYA+ +D
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 21/155 (13%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNN------FNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q+HA+I +S + + L+ +Y+ LV + L L D+ V+W ++
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS-------VSWVAM 184
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I +QNG E++ F +M S V P VF SVL +CT + F+ GE +H I++ G+
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244
Query: 138 DLDLYTNNALMNMYAQSQNM--------DMHIYDR 164
+ + NAL+ +Y++ N+ MH DR
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
AK+LHA+IFK+ L SRL+ IY V +++ L D + P+ V+ W +I
Sbjct: 29 AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI--PSSNVSFWNKVISGL 86
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRLGVDLD 140
L + L F MI V PD + F SVL++C+ F+ E +HA II G
Sbjct: 87 LAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSS 146
Query: 141 LYTNNALMNMYAQSQNMDM 159
N L+++Y+++ ++D+
Sbjct: 147 PLVCNPLIDLYSKNGHVDL 165
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T ++L+ S+ +Q+H Q+ K+ + ++ S L+ +Y + +
Sbjct: 412 MPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARG 471
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+L L+ V+W ++I TQ+ L E+L F M G+ D+ F S + +C +
Sbjct: 472 ILQRLREE-DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQ 530
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +HA G DL NAL+++YA+
Sbjct: 531 ALNQGQQIHAQSYISGYSEDLSIGNALVSLYAR 563
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
I+ +Q +Q+HAQ + + + + L+ +Y D+ + + ++W +
Sbjct: 529 IQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNA 587
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I Q+G E+L F +M +GV + F S + + + + G+ +HA +I+ G
Sbjct: 588 LISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTG 647
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D + +N L+ +Y++ +++
Sbjct: 648 YDSETEASNVLITLYSKCGSIE 669
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ ++ N +IK Q KQ+HA + KT + + L+ +Y+ + D+ +
Sbjct: 622 SAVSATANTANIK---QGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAK--REFF 676
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P V+W ++I +Q+G E+++ F M G+ P+H F VL +C+
Sbjct: 677 EMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACS 729
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+QLH I K + F+ + L+ +Y+ + NL+ + +++ S+I
Sbjct: 232 GEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRD--RISYNSLISGL 289
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +L F +M + PD S+L +C + G+ +H+ +I++G+ DL
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349
Query: 142 YTNNALMNMYAQ 153
+L+++Y +
Sbjct: 350 IIEGSLLDLYVK 361
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+HA+I K + ++ ++L+ Y + + + L L+ +W +II
Sbjct: 89 GKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRV-RNVFSWAAIIGV 147
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL +L FV M+ + ++PD+ V P+V K+C L RFG VH +++ G++
Sbjct: 148 KCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDC 207
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + +D +V D+IPERN
Sbjct: 208 VFVASSLADMYGKCGVLD------------------DARKVFDEIPERN 238
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 178 NVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEI-PE 236
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ F M GV P + L + + G+
Sbjct: 237 RNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQS 296
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +L+N Y +
Sbjct: 297 HAIAIVNGLELDNILGTSLLNFYCK 321
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L FG S+H
Sbjct: 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGY 571
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L + +L++MYA+ +++
Sbjct: 572 IIRNLQHSSSVSIETSLVDMYAKCGDIN 599
>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-D 63
+ L N L + ++ + QLHA I K L L+ Y+ +L + SL + D
Sbjct: 21 RNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHD 80
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ A W S+I QN L + SL F M+ GV PD ++FPS KSC +L
Sbjct: 81 SPHKSA--TTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLP 138
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
+ +H ++ LD++ +++++MYA+ ++ H V D
Sbjct: 139 VAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDI------------------CYAHNVFD 180
Query: 184 KIPERN 189
++P RN
Sbjct: 181 EMPYRN 186
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---NFNLVHDSLCLL 62
T+ +LL S+ + KQLH+ + K + + LL +Y + H+
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+T V W ++ Q G L ES F++M G+ P+ +PS+L++CT L
Sbjct: 376 ETENV----VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +H +I+ G ++Y + L++MYA+ +D
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 21/155 (13%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNN------FNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q+HA+I +S + + L+ +Y+ LV + L L D+ V+W ++
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS-------VSWVAM 184
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I +QNG E++ F +M S V P VF SVL +CT + F+ GE +H I++ G+
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244
Query: 138 DLDLYTNNALMNMYAQSQNM--------DMHIYDR 164
+ + NAL+ +Y++ N+ MH DR
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
AK+LHA+IFK+ L SRL+ IY V +++ L D + P+ V+ W +I
Sbjct: 29 AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI--PSSNVSFWNKVISGL 86
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRLGVDLD 140
L + L F MI V PD + F SVL++C+ F+ E +HA II G
Sbjct: 87 LAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSS 146
Query: 141 LYTNNALMNMYAQSQNMDM 159
N L+++Y+++ ++D+
Sbjct: 147 PLVCNPLIDLYSKNGHVDL 165
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 1/147 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T ++L+ S+ +Q+H Q+ K+ + ++ S L+ +Y + +
Sbjct: 412 MPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARG 471
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+L L+ V+W ++I TQ+ L E+L F M G+ D+ F S + +C +
Sbjct: 472 ILQRLREE-DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQ 530
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNAL 147
G+ +HA G DL NAL
Sbjct: 531 ALNQGQQIHAQSYISGYSEDLSIGNAL 557
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+QLH I K + F+ + L+ +Y+ + NL+ + +++ S+I
Sbjct: 232 GEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRD--RISYNSLISGL 289
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +L F +M + PD S+L +C + G+ +H+ +I++G+ DL
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349
Query: 142 YTNNALMNMYAQ 153
+L+++Y +
Sbjct: 350 IIEGSLLDLYVK 361
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 17 IKTKSQAKQLHAQIF-----KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP- 70
I+ +Q +Q+HAQ + + L + + L+ +Y+ + D+ + + P
Sbjct: 529 IQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAK--REFFEMPEKN 586
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVF-------------PSVLKSCT 117
V+W ++I +Q+G E+++ F M G+ P+H F ++L +CT
Sbjct: 587 VVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACT 646
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + GE ++ L + D T L NMYA S D
Sbjct: 647 VHKNIEIGEFAARHLLELEPE-DSATYVLLSNMYAVSGKWD 686
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T ++LL S +KQ+H I K+ + S L+ +Y+ F+LV D+ +
Sbjct: 416 SPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVF 475
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + V W ++I QN E++ F ++ SG+ P+ F +++ + LV
Sbjct: 476 NLMHNR-DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSM 534
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ HA II+ G D D + +NAL++MYA+
Sbjct: 535 FHGQQFHAQIIKAGADSDHHVSNALIDMYAK 565
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 27 HAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86
HA+ T FL + LL Y+ V D+ L D + V+W S I Q+G
Sbjct: 34 HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHK-NLVSWGSAISMHAQHGC 92
Query: 87 LVESLTCFV--RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+++ F + G P+ + S L++C FG+ VH +R+G+D ++Y
Sbjct: 93 EEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVG 152
Query: 145 NALMNMYAQSQNMD--MHIYD 163
AL+N+YA+ +D M ++D
Sbjct: 153 TALINLYAKVGCIDAAMLVFD 173
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + L+ + S +Q+H + + ++ + L+ +Y + ++ + D L
Sbjct: 117 LASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALP 176
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
PV W ++I +Q G +L F +M GV PD V S + +C+ L G
Sbjct: 177 VK-NPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGR 235
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
H R+ V+ D NAL+++Y + + +
Sbjct: 236 QTHGYAYRIAVETDASVINALIDLYCKCSRLSL 268
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q H ++ +I+ L+ +Y + + + L D ++ V+W ++I
Sbjct: 234 GRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENR-NLVSWTTMIAGYM 292
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++ F ++ G PD S+L SC L G VHA I+ ++ D Y
Sbjct: 293 QNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEY 352
Query: 143 TNNALMNMYAQSQNM 157
N+L++MYA+ +++
Sbjct: 353 VKNSLIDMYAKCEHL 367
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ ++ + +Q HAQI K + + + L+ +Y + + L ++
Sbjct: 520 TFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFES- 578
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W S+I Q+G E+L F M G+GV P++ F VL +C
Sbjct: 579 TLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACA 630
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L + S+ Q +Q+HA K + ++ + L+ +Y + ++ + + L
Sbjct: 321 SILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAED 380
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+++ ++I ++ G L ++ F +M + P F S+L + + +
Sbjct: 381 -DAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQI 439
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
H I++ G LDLY ++L+++Y++
Sbjct: 440 HGLIVKSGTSLDLYAGSSLIDVYSK 464
>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L++ ++ S K++HA K +++ L S L+ +Y+ F+ D+ C L +
Sbjct: 122 TFSSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDA-CKLFSY 180
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I C Q G +L ++ M+ + V + F +L + + + ++G
Sbjct: 181 MDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSF-IGLQYG 239
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +HA I LGV L+L AL+NMY++ Q ++
Sbjct: 240 KLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIE 272
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLC 60
S T +++L +SI + +Q+H+++ +T + + + L+ +Y + +V L
Sbjct: 319 ASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLR 378
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ +K+P ++W S+I ++G +SL F+ M GV P+ VL+ C+ +
Sbjct: 379 MFRGIKSP-NVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIK 437
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H II+ D D+ NAL++ YA S +D
Sbjct: 438 SPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVD 475
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W I+ +N E+L F M+ SG YP+ F S+L+SC L DF +G+ +HA
Sbjct: 86 VSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHAS 145
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ G + + ++L+++Y++
Sbjct: 146 SIKHGFESNQILGSSLIDLYSR 167
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ +Y+ + D++ + L + W +II QN E++ F +M S
Sbjct: 257 LKTALVNMYSRCQRIEDAI-KVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEIS 315
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160
GV + + S+L C ++ G +H+ +IR G++ D+ NAL++MY + + H
Sbjct: 316 GVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEH 375
Query: 161 IYDRFQGF 168
F+G
Sbjct: 376 GLRMFRGI 383
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH K+ + + L+ +Y + LVH++ + P V+W +I
Sbjct: 543 GKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRAFTEITEP-DVVSWNGLISGLA 601
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
NG + +L+ F M G+ PD F VL +C+
Sbjct: 602 SNGHISSALSAFDDMRLRGIQPDSITFLLVLSTCS 636
>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 912
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVH-DSLCLLDT 64
TL + L++ ++ + Q+H K +RF+ + L+ Y ++ LL
Sbjct: 117 TLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSL 176
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K V+W +++ +NG E+ +V+MI SGVYP+ F +L + + + +
Sbjct: 177 VKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSY 236
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA +I G +L+L A+++MY++ + M
Sbjct: 237 GKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRM 269
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H+ I K + +L + LL +Y VH + L D + V+W +I+ T+
Sbjct: 36 IHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNR-DVVSWTTILSSHTKTK 94
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
++L F MIGSG YP+ S L+SC L +F G +H ++LG++++ +
Sbjct: 95 HHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGT 154
Query: 146 ALMNMYAQ 153
+L+ Y +
Sbjct: 155 SLVEFYTK 162
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LL S S K LHA + + L + ++ +Y+ + D++ + +
Sbjct: 220 TFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNL- 278
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
TP V W ++I TQN + E+++ F M SG+ P++ + S+L + + ++
Sbjct: 279 -TPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDL 337
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
GE H+ +I +G++ DLY NAL++MY + ++
Sbjct: 338 GEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHI 370
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 30/203 (14%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L + L + T KQLH K+ + + L+ +Y+ +HD+ +
Sbjct: 523 SLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDI 582
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P +W +I + NGL+ +L+ F M +GV PD S++ +C+
Sbjct: 583 SEP-DAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACS-------- 633
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF------NGGREASVH 179
H ++ LG++ Y S + HI + + GGR
Sbjct: 634 ---HGGLLELGLE------------YFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAM 678
Query: 180 EVLDKIPERNGNVELSSGLAGCN 202
V++K+ + ++ + L CN
Sbjct: 679 GVIEKMSFKPDSLICKTLLNACN 701
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL SI + +Q H+++ + ++ + L+ +Y H + +
Sbjct: 321 TYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMY--MKCSHITTNAVKVF 378
Query: 66 KTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ P + W S+I + L +S F M +GV P+ ++L +C+
Sbjct: 379 REITSPNVMCWTSLIAGFAEKRL-EDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLV 437
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H II+ VD+D+ NAL++ YA +D
Sbjct: 438 PTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMID 472
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL S +KQ+H I K+ + S L+ +Y+ F+LV D+ L+ +L
Sbjct: 442 TFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAK-LVFSL 500
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++I QN E++ F R+ SG+ P+ F +++ + L G
Sbjct: 501 MQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHG 560
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ HA II+ G D D + +NAL++MYA+
Sbjct: 561 QQFHAQIIKAGADSDPHISNALIDMYAK 588
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+H ++T + +++ L+ +Y + + + L D+++ V+W ++I Q
Sbjct: 258 RQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENR-NLVSWTTMIAGYMQ 316
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N L E+++ F ++ +G PD S+L SC L G VHA +I+ ++ D Y
Sbjct: 317 NSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYV 376
Query: 144 NNALMNMYAQSQNM 157
NAL++MYA+ +++
Sbjct: 377 KNALIDMYAKCEHL 390
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
FL + LL Y+ + D+ L D++ + V+W S I Q+G ++L F
Sbjct: 66 FLANLLLRGYSKLGRLGDARRLFDSMPSR-NLVSWGSAISMYAQHGREDDALLLFAAFPS 124
Query: 100 SGVY------PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+G P+ + S L++C RFGE VH +LG+D +++ AL+N+YA+
Sbjct: 125 AGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAK 184
Query: 154 SQNMD--MHIYD 163
+ +D M ++D
Sbjct: 185 AGRIDAAMSVFD 196
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + L+ + +Q+H K + F+ + L+ +Y + ++ + D L
Sbjct: 140 LASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDAL- 198
Query: 67 TPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
PA PV W ++I +Q G +L F RM GV PD V S +C+ L G
Sbjct: 199 -PARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGG 257
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+H R + D NAL+++Y
Sbjct: 258 RQIHGYAYRTAAESDASVVNALIDLY 283
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ ++ + +Q HAQI K + + + L+ +Y + + L ++
Sbjct: 543 TFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFES- 601
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I Q+G E+L F M G+GV P++ F SVL +C
Sbjct: 602 TLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACA-------- 653
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD L+ N++ YA + H FG +G A+ E ++++
Sbjct: 654 ---HAGL----VDEGLHHFNSMKTKYAVEPGTE-HYASVVNLFGRSGKLHAA-KEFIERM 704
Query: 186 PERNGNVELSSGLAGCNKF 204
P S L+ C+ F
Sbjct: 705 PIEPVATIWRSLLSACHLF 723
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L + S+ Q +Q+HA + K + ++ + L+ +Y + ++ + + L
Sbjct: 344 SILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAED 403
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+++ ++I + G L ++ F +M + P F S+L + D + +
Sbjct: 404 -DAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQI 462
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ-------------SQNMDMHIYD 163
H I++ G LDLY +AL+++Y++ QN DM I++
Sbjct: 463 HGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWN 510
>gi|302768433|ref|XP_002967636.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
gi|300164374|gb|EFJ30983.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
Length = 747
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 4 TKTLINLLKNPVSIKTKS--QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T N+L+ ++ KS Q + +H+QI ++ ++ L++RL+++Y + +++ L
Sbjct: 215 ASTFKNILRACTRLEEKSLPQGRLVHSQILESGLGSNLALVNRLVYLYGSSGCFEEAMDL 274
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
LD + P V W +++ +Q G ++L F R GV P F S + +C+ D
Sbjct: 275 LDRMNPP-EDVPWNAMVAALSQRGKNRQALELFNRTSLEGVKPSGVTFVSGIDACSDGGD 333
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G ++HA + G D L+NMY + N++
Sbjct: 334 EQQGRAIHARALEAGFGSDEVVTGCLINMYGKCGNLE 370
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 5/157 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ + LKN + S+ K +H+QI S ++ + +L +Y V ++
Sbjct: 14 SSSAFASALKNCTEV---SEGKHIHSQIVSAGLDRSTYVGNHVLEMYGRLGSVEEAQEAF 70
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + ++W I QNG E+L F +M GV P F V+ +C D
Sbjct: 71 EKV-FEKNHISWTLFIAALAQNGHCKEALATFKKMDLEGVKPKRLAFLRVIGACCDARDA 129
Query: 123 RFGESVHACIIRLGV-DLDLYTNNALMNMYAQSQNMD 158
G VHA ++ V D++ + AL+NMY + +D
Sbjct: 130 TEGRKVHARVLEDAVLASDVFLSAALINMYGKCGCLD 166
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++++ S + + +HA++ + + + + L+ +Y + D+ +
Sbjct: 421 TLVSVVAAFWSSDFLDRGRAMHARLIELGHSSDVIVTNALIGMYGKCGSLPDAKMIFANA 480
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W SII C+Q G +L F RM SG P +VL++C + D G
Sbjct: 481 RRK-NAVSWNSIIGACSQQGDGKSALDLFARMDLSGSSPTTITLANVLEACVRINDLPRG 539
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
+ +H I ++ D ++L+NMY + ++ I+ R+Q
Sbjct: 540 KVIHLEIRGSMLEHDPNVRSSLLNMYTKCGSLVDAEKIFQRWQ 582
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 18 KTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ ++ +++HA++ + + + FL + L+ +Y + + + ++ + +W S
Sbjct: 127 RDATEGRKVHARVLEDAVLASDVFLSAALINMYGKCGCLDKAEMVFGSIASK-DDFSWTS 185
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF--GESVHACIIR 134
+IR ++ +L ++ + G PD + F ++L++CT L + G VH+ I+
Sbjct: 186 MIRAYVEHEEFDLALEIYMEFLVEGGKPDASTFKNILRACTRLEEKSLPQGRLVHSQILE 245
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
G+ +L N L+ +Y S + M + DR
Sbjct: 246 SGLGSNLALVNRLVYLYGSSGCFEEAMDLLDRM 278
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V + K L +F +E S F + +++ Y+ + +L + + + V+W
Sbjct: 188 VGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMP-ERDEVSW 246
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I +Q+G V+ L FV M G P+ + SVL +C D ++G +HA I+R
Sbjct: 247 NTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR 306
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDM 159
+ LDL N L++MYA+ +D+
Sbjct: 307 MEHSLDLVFGNGLIDMYAKCGCLDL 331
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S++ QNG E L +V M +GV PD F + +++C L + G V
Sbjct: 477 VTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTH 536
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ G+ L++ N+++ MY++
Sbjct: 537 ATKFGLSLNVSVANSIVTMYSR 558
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
Q+F+ + F + ++ + + + D+ L D + V+W ++I +QNG
Sbjct: 64 QVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFH 123
Query: 88 VESLTCFVRMI----GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
S F MI G D F SV+K+C L D R +HA + +LG ++
Sbjct: 124 SRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCI 183
Query: 144 NNALMNMYAQSQNMDM 159
N+++ MY + ++D+
Sbjct: 184 QNSVVGMYVKCGDVDL 199
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S+I GL ++L F +M S V D + P++L C+ GE +H
Sbjct: 345 ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGY 404
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+ G+ NA++ MYA+ + D
Sbjct: 405 TIKSGMGSSAPVGNAIITMYAKCGDTD 431
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++IR G E+L + M G+G++PD+ FP V++SC +L R G+ VH I+
Sbjct: 96 WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155
Query: 134 RLGVDLDLYTNNALMNMYAQS 154
+ G D D++ ++L+ MY+QS
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQS 176
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNN------FNLVHDSLCLLDTLKTPAPPVAWK 75
+ K++H I K + F+ S L+ +Y+ LV + + + V+W
Sbjct: 146 EGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNI-------VSWT 198
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I QN E L F M+GSG P+ SVL +C L G+ +H I+L
Sbjct: 199 AVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKL 258
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
GVD D+ NAL+ +Y + N++
Sbjct: 259 GVDPDVSLTNALIALYGKCGNVE 281
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + +Q+HAQI K + +R ++ ++L+ Y + + + L L+
Sbjct: 51 EILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLR 110
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 111 VR-NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 169
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH + + G+ ++ ++L +MY + +D +V D IP
Sbjct: 170 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLD------------------DARKVFDYIP 211
Query: 187 ERNG 190
+RN
Sbjct: 212 DRNA 215
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L FG S+H
Sbjct: 488 ISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHGY 547
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR +L++MYA+ +++
Sbjct: 548 IIRNQQYSFSASIETSLVDMYAKCGDIN 575
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 154 NVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI-PD 212
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M G+ P + L + + G+
Sbjct: 213 RNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQS 272
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +++N Y +
Sbjct: 273 HAIAIVNGLELDNILGTSILNFYCK 297
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + +Q+HAQI K + +R ++ ++L+ Y + + + L L+
Sbjct: 52 EILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLR 111
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 112 VR-NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 170
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH + + G+ ++ ++L +MY + +D +V D IP
Sbjct: 171 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLD------------------DARKVFDYIP 212
Query: 187 ERNG 190
+RN
Sbjct: 213 DRNA 216
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L FG S+H
Sbjct: 489 ISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRSIHGY 548
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR + +L++MYA+ +++
Sbjct: 549 IIRNQQYSFSAWIETSLVDMYAKCGDIN 576
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 155 NVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI-PD 213
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M G+ P + L + + G+
Sbjct: 214 RNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQS 273
Query: 129 HACIIRLGVDLDLYTNNALMNMY 151
HA I G+ LD +++N Y
Sbjct: 274 HAXXIVNGLXLDNILGTSILNFY 296
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++LH +I K+ R + + L+ +Y + D+ + D + V W SII C
Sbjct: 121 GRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEM-CVRDLVLWSSIISCYV 179
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NG+ E L F MI G+ PD + SV ++C + R +SVH ++R G+ D
Sbjct: 180 ENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGS 239
Query: 143 TNNALMNMYAQ 153
+N+L+ MY+Q
Sbjct: 240 LSNSLIVMYSQ 250
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K + F+ + L+ +Y+ + + + +K + VAW +I +
Sbjct: 425 GQQIHGHVMKRGFFD-EFVQNSLMDMYSKCGFASSAYTIFNKIKHKSI-VAWNCMICGFS 482
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG+ VE+L+ F M + + + F S +++C+ L G+ +H II G DLY
Sbjct: 483 QNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLY 542
Query: 143 TNNALMNMYAQSQNM 157
+ AL++MYA+ ++
Sbjct: 543 IDTALVDMYAKCGDL 557
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H + + L + L+ +Y+ + + L + + + W S+I
Sbjct: 222 AKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTS-CWTSMISAYN 280
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR--LGV-DL 139
QN E+L F++M S V P+ SVL SC L + G+SVH ++R +GV L
Sbjct: 281 QNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGL 340
Query: 140 DLYTNNALMNMYAQSQNM 157
DL AL++ Y+ M
Sbjct: 341 DL--GPALIDFYSACWKM 356
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + GL E++ F M+ G+ PD S + + +FG+ +H
Sbjct: 372 VSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGH 431
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++ G D + N+LM+MY++
Sbjct: 432 VMKRGF-FDEFVQNSLMDMYSK 452
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ +T++ LL + + T S+ Q+HA I KT N+ ++++ +N N +H + L
Sbjct: 16 TEQTILTLLNSHCN--TLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFL 73
Query: 63 ----DTLKTPAP---PVAWKSIIRCCTQNGLLVESLTCFVR-MIGSGVYPDHNVFPSVLK 114
T TP P + ++IR +Q + F R M+ GV P+ FP VLK
Sbjct: 74 FPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLK 133
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
C + R G+ VH C+++ G + D++ N L++MY
Sbjct: 134 GCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMY 170
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I + G ++ F M GV PD SVL +C L G+ V +
Sbjct: 194 VTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESY 253
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ + + + NAL++M+A+ N+D I
Sbjct: 254 VEKKNIPKSVELCNALIDMFAKCGNVDKAI 283
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIR 79
+KQ+H+ T S F+ +RL+ IY+ + LV D+ + + + + + W SIIR
Sbjct: 53 HSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIR 112
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+G +E+L + +M GV D FP +L++ + L F +++H +++ G
Sbjct: 113 ANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQN 172
Query: 140 DLYTNNALMNMYAQSQNMD 158
L+ N L+ MYA+ + MD
Sbjct: 173 HLHVGNELIGMYAKLERMD 191
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV W S++ + G L E++ F +M GV P + VL C L G+ +H
Sbjct: 240 PVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHG 299
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+++ G + L+ NAL+ +Y +
Sbjct: 300 YMVKGGFNDYLFAKNALITLYGK 322
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W +II GL ESL F +M + V + SVL C +L G +H
Sbjct: 381 ITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGH 440
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR +D ++ N L+NMY +
Sbjct: 441 VIRARMDDNVLVGNGLINMYTK 462
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + +Q+HAQI K + +R ++ ++L+ Y + + + L L+
Sbjct: 39 EILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLR 98
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 99 VR-NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 157
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH + + G+ ++ ++L +MY + +D +V D IP
Sbjct: 158 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLD------------------DARKVFDYIP 199
Query: 187 ERNG 190
+RN
Sbjct: 200 DRNA 203
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y ++ D+ + D +
Sbjct: 142 NVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI-PD 200
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M G+ P + L + + G+
Sbjct: 201 RNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQS 260
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +++N Y +
Sbjct: 261 HAIAIVNGLELDNILGTSILNFYCK 285
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M S + P+ L +C L FG S+H
Sbjct: 476 ISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGY 535
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR +L++MYA+ +++
Sbjct: 536 IIRNQQYSFSASIETSLVDMYAKCGDIN 563
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++IR G E+L + M G+G++PD+ FP V++SC +L R G+ VH I+
Sbjct: 96 WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155
Query: 134 RLGVDLDLYTNNALMNMYAQS 154
+ G D D++ ++L+ MY+QS
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQS 176
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNN------FNLVHDSLCLLDTLKTPAPPVAWK 75
+ K++H I K + F+ S L+ +Y+ LV + + + V+W
Sbjct: 146 EGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNI-------VSWT 198
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I QN E L F M+GSG P+ SVL +C L G+ +H I+L
Sbjct: 199 AVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKL 258
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
GVD D+ NAL+ +Y + N++
Sbjct: 259 GVDPDVSLTNALIALYGKCGNVE 281
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL+++L ++ + K +H K ++P+ L + L+ +Y V + L D
Sbjct: 231 TLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVS-LTNALIALYGKCGNVETARSLFDG 289
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W ++I QN ++ F RM V D+ SV+ +C L
Sbjct: 290 M-VVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNT 348
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
G +H + R G+++++ NAL++MYA+ N+D+ +++R
Sbjct: 349 GRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERL 391
>gi|357453189|ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 19/211 (9%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL S K + K +HA+ + + F+ ++L+ Y + + +H + +L +
Sbjct: 13 TLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQA-NILFSFTNR 71
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P + S+IR L E+L+ F M S D + P VLKSC L R G+ V
Sbjct: 72 KPTFLYNSLIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQV 131
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYD------------RFQGFGFNGGR 174
H ++ G LDL +NAL+NMYA+ ++ ++D G+G + GR
Sbjct: 132 HGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMH-GR 190
Query: 175 EASVHEVLDK---IPERNGNVELSSGLAGCN 202
V E+ ++ + ER NV + L C+
Sbjct: 191 FEEVFEMFNRMVEVGERMDNVSFTVVLTACS 221
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 28 AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSIIRCCTQN 84
+Q+F ++ + +F + V SL L LK V+W S+I CC+QN
Sbjct: 305 SQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQN 364
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G +E+L F M +GV P+ P +L +C + G++ H +R G+ D+Y
Sbjct: 365 GRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424
Query: 145 NALMNMYAQ 153
+AL++MYA+
Sbjct: 425 SALIDMYAK 433
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++N L + + + SQ +Q HA I KT N L ++LL Y N D+ +LD +
Sbjct: 17 TILNCLNSTTA--SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV 74
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P P V ++ ++I ++ +L+ F +M+ G+ PD+ V PS +K+C L +
Sbjct: 75 --PEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKP 132
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ-SQNMDMH-IYDRF 165
VH G D D + ++L++MY + +Q D H ++DR
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM 175
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I +GL E++ F+ M G PD SVL + L D G +H
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ G+ D ++AL++MY +
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGK 297
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +N+L+ S+K K++HA+I + + L S L+ +Y N+ V + + ++
Sbjct: 322 TFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESS 381
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S+I +QN +L+ F M GV P+ F S + +C + R G
Sbjct: 382 RER-DVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRG 440
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H + LG+D D+ AL+N+Y + ++
Sbjct: 441 TQLHERVRCLGLDKDVPVATALVNLYGKCGRLE 473
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK + + K++H+ I +T R +++ ++ +Y V + + D+++ P
Sbjct: 123 LLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDP- 181
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
+W II QNG +E L RM +GV PD F +VL +CT + + +H
Sbjct: 182 NVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILH 241
Query: 130 ACII-RLGVDLDLYTNNALMNMYAQ 153
A I G+D D AL+N+Y +
Sbjct: 242 AATISSTGLDRDAAVGTALINLYGK 266
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLI-SRLLFIYNNFNLVHDSLCLLDT 64
T +L ++ +AK LHA + + + + L+ +Y + ++ +
Sbjct: 220 TFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQ 279
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W S+I Q+G ++ + M GV P++ F +VL++ T L F++
Sbjct: 280 IDNK-DIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQY 338
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMY 151
G+ +HA I++ G D+ +AL+ MY
Sbjct: 339 GKEIHARIVQAGYSDDVCLTSALVKMY 365
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 17 IKTKSQAKQLHAQIFKTL-----EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP 71
++ + K++H + + P+ L + ++ +Y +L + D +K
Sbjct: 23 LRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQ-NV 81
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV-LKSCTLLVDFRFGESVHA 130
VAW S+I T G +++ F +M+ SGV PD F S+ LK + G+ VH+
Sbjct: 82 VAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHS 141
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ 166
I++ G + D N ++ MY + +++ +++D Q
Sbjct: 142 HIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L I+ Q+HAQ+ KT F+ S L+ Y V ++ D L
Sbjct: 231 TYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGL 290
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ VAW +++ QNG E+L F +M P+ F +L +C LV +G
Sbjct: 291 R-DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYG 349
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I+ G L NAL+NMY++S N+D
Sbjct: 350 DLLHGRIVMSGFKNHLIVGNALINMYSKSGNID 382
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC-- 60
S K ++NLLK + K+ K +HAQ+ + + I+++ + N ++ S C
Sbjct: 22 SLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCAR 81
Query: 61 -LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTL 118
L D + V+W +++ G ++E L F ++ YP+ +F VL C
Sbjct: 82 KLFDRM-LQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCAD 140
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG---FGFN 171
+ G+ H +++ G+ L Y NAL++MY++ ++D M I D G F +N
Sbjct: 141 SGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYN 198
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ KQ H + K+ +++ + L+ +Y+ V ++ +LDT+ P V ++ SI+
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTV--PGDDVFSYNSILSA 203
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++G E+ RM+ V D + SVL C + D + G +HA +++ G+ D
Sbjct: 204 LVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFD 263
Query: 141 LYTNNALMNMYAQ 153
++ ++ L++ Y +
Sbjct: 264 VFVSSTLIDTYGK 276
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
SQ KQ+H +I K N + L+ +L+ + ++F + + + L++P+ W +IR
Sbjct: 34 SQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPST-FTWNLMIRS 92
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ N E+L F+ M+ D FP V+K+C R G VH I+ G D
Sbjct: 93 LSLNHKPREALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFND 152
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ N LM++Y F G+ +V DK+P R+
Sbjct: 153 VFFQNTLMDLY------------------FKCGKPDCGRKVFDKMPGRS 183
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +N E+ F RM V P+ ++L++ T L G VH
Sbjct: 216 VSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDY 275
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ G LD Y AL++MY++
Sbjct: 276 AHKNGFVLDCYLGTALIDMYSK 297
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK +K KQ+H + + F+ + L+ +Y + DS L D +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++ C Q E++ F M+ SG+ P+ S++ +CT L D G
Sbjct: 219 -PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H +I+LG D D ++ NAL++MYA+
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAK 305
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL + K+ Q+HA I K+ + + + L+ +Y+ + L+D P
Sbjct: 61 KLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEP 120
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I QNGL +L F M GV + F SVLK+C+++ D R G+ V
Sbjct: 121 -DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H ++ G + D++ N L+ MYA+ D F + R + D+IPER
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKC--------DEF----LDSKR------LFDEIPER 221
Query: 189 N 189
N
Sbjct: 222 N 222
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ ++ +Q+H K+ + ++++ L+ Y + V D+ + +
Sbjct: 462 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 521
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V++ S+I Q G E+L F+ M + PD V S+L +C L F G
Sbjct: 522 -TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG 580
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I++ G LD++ N+L+NMYA+ ++D
Sbjct: 581 KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 613
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + LK + K +QLH+ + K + F+ L+ +Y+ +L+ D+ + L
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+AW +II +Q +E+L+ FV M G+ + ++LKS L
Sbjct: 421 PEK-DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 479
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH ++ G D+Y N+L++ Y + +++
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVE 512
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L +++ ++ S+ K +H + K F + L+ +Y + D++ + + +
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K P V+W ++I C + ++L +M SG+ P+ S LK+C + G
Sbjct: 320 KQP-DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG 378
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ ++++ ++ DL+ + L++MY++
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSK 406
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL ++ Q KQLH I K F + L+ +Y + D+ L T
Sbjct: 566 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSEL-TE 624
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G ++L F +M+ GV P+H SVL +C
Sbjct: 625 RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGAC 672
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LL V ++ S KQLH+ + ++ + F+ L+ +Y V +S + +T+
Sbjct: 250 TLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I Q+ E++ F M+ V P+ F SVLK+C L DF G
Sbjct: 310 -LHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIG 368
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I+LG+ N+L+NMYA+S M+
Sbjct: 369 KQLHGQTIKLGLSTINCVGNSLINMYARSGTME 401
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I +Q GLL +++ F R++ S PD S+L +C L F G+ +H+
Sbjct: 214 VTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSW 273
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G+ D++ L++MYA+S ++
Sbjct: 274 VIRSGLASDVFVGCTLVDMYAKSAAVE 300
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 1 MTSTKTLIN---LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD 57
+T+T LI LLK + K LH ++ + P L++ L+ +Y+ +
Sbjct: 33 LTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWEN 92
Query: 58 SLCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG---VYPDHNVFPSVL 113
+L + + V+W +II C N + +L F+ M+ +YP+ F ++L
Sbjct: 93 ALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALL 152
Query: 114 KSCTLLVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQS----QNMDMHIYDRFQ 166
+SC+ + F G ++ A +++ G D + AL++M+ + Q+ M ++D+ Q
Sbjct: 153 RSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARM-VFDKMQ 209
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ I K+ + ++ S L+ +Y+ V+D+ + D + V+W S+I C QN
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEM-GDRNVVSWNSLITCYEQN 231
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYT 143
G VE+L F M+ S V PD SV+ +C L + G+ VHA ++++ + D+
Sbjct: 232 GPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIIL 291
Query: 144 NNALMNMYAQ 153
+NA ++MYA+
Sbjct: 292 SNAFVDMYAK 301
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E+L+ F + V P H F ++LK+C L D G H
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVH 411
Query: 132 IIRLGVDL------DLYTNNALMNMYAQ 153
+++ G D++ N+L++MY +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 39/222 (17%)
Query: 2 TSTKTLINLLKNPVSIKTKS-QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
T + LL + + +K + + +HA + K+ N F+ +RL+ Y + D
Sbjct: 17 TVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQ 76
Query: 61 LLDTLKTPAPPV-AWKSIIRCCTQNGLL-------------------------------V 88
L D K P V W S++ T+ G L
Sbjct: 77 LFD--KMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCE 134
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F M G + F S L +C+ L D G +H+ I + D+Y +AL+
Sbjct: 135 EALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALV 194
Query: 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+MY++ N++ D Q F G R L E+NG
Sbjct: 195 DMYSKCGNVN----DAQQVFDEMGDRNVVSWNSLITCYEQNG 232
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T N+LK + Q H + F++ E + F+ + L+ +Y V +
Sbjct: 388 TFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY 447
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ + V+W ++I QNG E+L F M+ SG PDH VL +C
Sbjct: 448 LVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSAC 503
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H K + F+++ L+ +Y N ++ + L D + V+W SII + N
Sbjct: 79 EIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGN 138
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G+ E+L F M+ +GV + F + L++C + G +HA I++ G LD+Y
Sbjct: 139 GMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVA 198
Query: 145 NALMNMYAQSQNM 157
NAL+ MY + M
Sbjct: 199 NALVAMYVRFGKM 211
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C NGL ++L F M +G+ PD+ S+L + L + G+ +H
Sbjct: 428 VSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGF 487
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IIR G L+ +N L++MYA+ +++
Sbjct: 488 IIRKGFILEGSISNTLVDMYARCGSVE 514
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA I K+ ++ + L+ +Y F + ++ + L+ V W S++ QN
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSMLTGFIQN 239
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E+L F + + + PD S++ + L G+ +HA I+ G D ++
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVG 299
Query: 145 NALMNMYAQ 153
N L++MYA+
Sbjct: 300 NTLIDMYAK 308
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y V D+ + D + + W +++ NG + +L + M GV D
Sbjct: 1 MYGKCGSVLDAEMIFDKM-SERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
FP +LK+C ++ D G +H I+ G D ++ N+L+ +YA+ +++ ++DR
Sbjct: 60 TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+++L S+ T + K++H I + + + L+ +Y V D+ +
Sbjct: 464 TLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCT 523
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K + W ++I +G ++ F+RM + PDH F ++L +C+
Sbjct: 524 KNR-NLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACS 574
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
++K+ KQ+H QI + F++++L+ +Y + + + + L D K P P V AW
Sbjct: 7 NLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFD--KMPQPNVYAW 64
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I ++G+ + + + M S V PD+ VFP VL++CT L+ F G +H +I
Sbjct: 65 TAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIV 124
Query: 135 LGVDLDLYTNNALMNMYAQSQN 156
G + +L N+L++MY + N
Sbjct: 125 CGCESNLQVCNSLIDMYVKCGN 146
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++LK K KQ+H + T + F+ + L+ +Y D+ L D +
Sbjct: 15 SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+ V+W ++ C + + E+++ F M+ SG+ P+ S++ CT L D G +
Sbjct: 75 SV-VSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKI 133
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
H +I+LG D D ++ NAL++MYA+
Sbjct: 134 HGYLIKLGYDSDAFSANALVDMYAK 158
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ +++ +Q+HA K+ ++++ L+ Y V D+ + +
Sbjct: 315 TLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFE-- 372
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++P V + S++ Q+G E+L ++ M G+ PD V S+L +C L +
Sbjct: 373 ESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQ 432
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH I++ G D++ N+L+NMYA+ +++
Sbjct: 433 GKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIE 466
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++IN+ ++ Q +++H + K + F + L+ +Y ++ D+ +
Sbjct: 113 SLSSMINVC---TGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVF 169
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + P V+W +II C + +L M SG+ P+ S LK+C +
Sbjct: 170 DEIAKP-DIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 228
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H+ +I++ + D + L++MY++ +MD
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMD 264
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + LK + + +QLH+ + K + FL L+ +Y+ N + D+ L+ L
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDAR-LVFKL 272
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+AW ++I +QN E+ + F M G+ + +VLKS L
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC 332
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA ++ G + D Y N+L++ Y + +++
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVE 365
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL S+ Q KQ+H I K + F + L+ +Y + D+ C +
Sbjct: 419 SLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR 478
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W ++I Q+G E+L F +M+ GV P+H SVL +C
Sbjct: 479 GI-VSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCAC 525
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160
G+ + FPSVLK+CT+ D G+ VH ++ G D D + N+L+ +YA+
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKC------ 58
Query: 161 IYDRFQGFGFNGGREASVHEVLDKIPERN 189
GFG + D IP+R+
Sbjct: 59 -----GGFG-------DARSLFDAIPDRS 75
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQI----FKTLEPNSRFLISRLLF--IYNNFNL 54
M +TK LI L+K ++K QAKQ+HA I F L P LI R+L + N +
Sbjct: 1 MAATK-LITLMKKCSTVK---QAKQIHAHILINGFTFLRP---LLIHRMLLWDVTNYRTM 53
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
+ + +L L P +W +IR +Q L E+++ +V+M + + P + S LK
Sbjct: 54 ANYAYSMLHHLHIP-DSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALK 112
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
SC + D G S+H + G + +Y AL+++Y++ +M
Sbjct: 113 SCARIHDMLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDM 155
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY--PDHNVFPSVLKSCTLLVDFRFGESVH 129
+++ ++I C QN E+L F M+ +Y PD SV+ +C+ L D +
Sbjct: 295 LSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIE 354
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + G+ LD + AL+++YA+ ++D
Sbjct: 355 SHMNDFGIVLDDHLATALIDLYAKCGSID 383
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HAQ K + + + L+ +Y+ V D L + ++ ++W SII
Sbjct: 167 GRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDK-DLISWGSIIAGLA 225
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLD 140
Q G +++L F MI GV+ P+ F SV ++C+++V+ +GE +H ++ +D +
Sbjct: 226 QQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRN 285
Query: 141 LYTNNALMNMYAQSQNMD 158
Y +L +MYA+ +D
Sbjct: 286 SYAGCSLSDMYARCNELD 303
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV+W ++I QN +++ F M+ SG PD S + +C+ L D G VHA
Sbjct: 113 PVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHA 172
Query: 131 CIIRLGVDLDLYTNNALMNMYAQS 154
I+ DL NAL+ MY++S
Sbjct: 173 QAIKWESGSDLIVQNALVTMYSKS 196
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + GLL E++ F M SG+ PD ++L +C G S+H+
Sbjct: 318 VSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSY 377
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++LG+ D+ +N+L++MYA+
Sbjct: 378 LVKLGLGGDVIVSNSLLSMYAR 399
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + KQ+HA FK L + L+ Y + D+ L + +
Sbjct: 455 SLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIM 514
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T +W S+I Q G E+L F RM GV P+H F VL +C+
Sbjct: 515 GTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACS 566
>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 3/165 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++T +++ + S +QLH+ K + F+ L+ +Y + D+ C+
Sbjct: 269 AGSRTFATMIQASAGLGWISIGRQLHSCALKMEVGDDIFVSCALIDMYGKCGSIEDAHCV 328
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + VAW +II +G E+L M SGV DH F V++ C L
Sbjct: 329 FDEMPE-RNIVAWNTIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVVRICARLAS 387
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ + HA ++R G D+ N+AL++ Y++ ++ H++D+
Sbjct: 388 LNYAKQAHASLLRHGFGSDIVANSALVDFYSKWGRVETARHVFDQ 432
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T +LK IK + + K++H + + + + L+ Y+ LV + + D
Sbjct: 105 TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFD 164
Query: 64 TLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K PA VAW ++I C +Q GL E+L + +M V D ++ SC L
Sbjct: 165 --KMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGAL 222
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GF 168
G +H G+D LY NAL++MYA+ ++D I+DR Q G+
Sbjct: 223 NIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGY 282
Query: 169 GFNG-GREA 176
G +G G EA
Sbjct: 283 GVHGRGSEA 291
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHD 57
M++ K ++ LL+ S+K + +++HA + + + + ++LL I + +L +
Sbjct: 1 MSNEKAILALLQGCNSLK---RLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYA 57
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSC 116
L L ++ P AW SIIR Q+ ++++ + +M+ S PD F VLK+C
Sbjct: 58 QL-LFHQMECPQTE-AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
+ R + VH +IR G D D+ L+ Y+
Sbjct: 116 ERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYS 151
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I K+ F+ S L+ Y+ LV + + D ++ V+W +I C QN
Sbjct: 177 QIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEK-NVVSWNCLITCYEQN 235
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYT 143
G +E+L F RM G PD SV+ +C L F+ G +HA +++ DL
Sbjct: 236 GPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLIL 295
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE--LSSGLA 199
NAL++MYA+ GR V D++P RN E + SG A
Sbjct: 296 GNALVDMYAKC------------------GRVNEARCVFDRMPVRNAVSETTMVSGYA 335
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 30/182 (16%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN----------- 50
T + LL V +++ A+ +H ++ +T F+ +RL+ +Y
Sbjct: 22 TDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKV 81
Query: 51 ----------NFNLVHDSL---------CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91
+FN + +L L +L +W S+I Q+ E+L
Sbjct: 82 FDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEAL 141
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
FVRM + F S L +C+ L D + G +H I + LD++ + L++ Y
Sbjct: 142 DWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFY 201
Query: 152 AQ 153
++
Sbjct: 202 SK 203
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E+L F + V P H F ++L + L D G H+
Sbjct: 356 VSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSH 415
Query: 132 IIRLGVDL------DLYTNNALMNMYAQSQNMD 158
+++ G D++ N+L++MY + +++
Sbjct: 416 VVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVE 448
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T NLL ++ +Q H+ + F++ E F+ + L+ +Y V + L
Sbjct: 392 TFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGL 451
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + + V+W ++I QNG +E+L F +M+ SG PDH L +C+
Sbjct: 452 RVFENM-VEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACS 508
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +II+ QN L+E+L+ F M+ G+ P++ S+L C L +G VH ++
Sbjct: 301 WSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAML 360
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R D+D+Y +AL+ MY + N+D
Sbjct: 361 RRSFDMDIYAVSALITMYIKCGNLD 385
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K +H Q K S F+I+ L +YN + L + +K P V+W ++I
Sbjct: 276 HGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMP-DVVSWTTLITTY 334
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G ++ F RM S V P+ F +V+ +C L ++GE +H ++RLG+ L
Sbjct: 335 VQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDAL 394
Query: 142 YTNNALMNMYAQS 154
N+++ +Y++S
Sbjct: 395 SVANSIVTLYSKS 407
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + + ++ + + ++ +Y+ L+ + + + T ++W +II +
Sbjct: 378 GEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGI-TRKDIISWSTIIAVYS 436
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E+ M G P+ SVL C + G+ VHA ++ +G+D +
Sbjct: 437 QGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAM 496
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCN 202
++AL++MY++ +++ FNG + ++ ++ NG E N
Sbjct: 497 VHSALISMYSKCGSVEE------ASKIFNGMK---INNIISWTAMINGYAEHGYSQEAIN 547
Query: 203 KFEK 206
FEK
Sbjct: 548 LFEK 551
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH K+ NS F+ S L+ +Y + C + T V+W +II G
Sbjct: 179 LHGFSVKSGLINSVFVSSALIDMYMKVGKIEQG-CRVFKKMTKRNVVSWTAIIAGLVHAG 237
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+E+L F M S V D + F LK+ G+++H I+ G D + N
Sbjct: 238 YNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 297
Query: 146 ALMNMYAQSQNMD--MHIYDRFQ 166
L MY + D M ++++ +
Sbjct: 298 TLATMYNKCGKADYVMRLFEKMK 320
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA + + + S L+ +Y+ V ++ + + +K ++W ++I
Sbjct: 478 QGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKIN-NIISWTAMINGY 536
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFRF 124
++G E++ F ++ G+ PD+ F VL +C+ +VD F
Sbjct: 537 AEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGF 581
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I E+L F M + G+ D + LK+C L V+ FGE +H
Sbjct: 122 ISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHG 181
Query: 131 CIIRLGVDLDLYTNNALMNMY 151
++ G+ ++ ++AL++MY
Sbjct: 182 FSVKSGLINSVFVSSALIDMY 202
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
K + A+ +HA + ++ FL++ L+ +Y V D+ + D K P+ V +
Sbjct: 71 AQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFD--KMPSRDVVS 128
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +I QN + E++ M+ + P+ F S+LK+ GE +HA +
Sbjct: 129 WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAV 188
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHI--YDRF 165
+ D D+Y +AL++MYA+ + MDM I +DR
Sbjct: 189 KYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + S +Q+HA K ++ S LL +Y + ++ + D L
Sbjct: 163 TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I + +L F M +G H + S+ + + G
Sbjct: 223 -VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 281
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR 164
VHA +I+ G L + N ++ MYA+S +M ++DR
Sbjct: 282 RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDR 322
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Query: 22 QAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ +QLHAQ F LEP S ++ + LL +Y V + + D + VAW S+I
Sbjct: 145 EGQQLHAQAFGHGLEP-SPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGG 203
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ G++ E+L F M GV PD SV+ +C G+ VHA I R G+ +D
Sbjct: 204 YSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVD 263
Query: 141 LYTNNALMNMYAQ 153
L + AL++MYA+
Sbjct: 264 LELSTALIDMYAK 276
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H Q+ K +S + LL +Y N DS L L+ P V W ++I
Sbjct: 630 GRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGY 689
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q ++L + M + PD F SVL++C + + G+ +H+ I G ++D
Sbjct: 690 AQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDE 749
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
T ++L++MYA+ ++ + +V ++P RN + +S + G
Sbjct: 750 VTCSSLIDMYAKCGDVKGSL------------------QVFREMPRRNNVISWNSMIVGL 791
Query: 202 NK 203
K
Sbjct: 792 AK 793
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+ +L ++L S+ + +HAQ K ++ ++ S L+ +Y + + + +
Sbjct: 307 ATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQV 366
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++L V W +++ QNGL E + F M G PD F S+ +C L
Sbjct: 367 FNSLGE-RNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
FG +H +I+ +L+ NAL++MYA+S
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKS 458
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + K ++ F+ + L+ +Y + ++ + +K V+W +II Q
Sbjct: 431 QLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKI-HDNVSWNAIIVGYVQE 489
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
E+ F RM+ +GV PD S++ +C + + + G+ H ++++G+D
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAG 549
Query: 145 NALMNMYAQ 153
++L++MY +
Sbjct: 550 SSLIDMYVK 558
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ P P VAW +I + G E+++ F+ + +G+ + SVL + L +
Sbjct: 268 QIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNY 327
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA + G+D ++Y +AL+NMYA+ MD
Sbjct: 328 GSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMD 361
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ +GL + FV M V P+ F VL +C+ L D FG VH +
Sbjct: 109 AWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGV 168
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
+ G + L++MYA+
Sbjct: 169 FKTGFGFRSFCQGGLIDMYAK 189
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ + + +++H+ IF T S L+ +Y V SL + +
Sbjct: 719 SVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I +NG E+L F +M + PD F VL +C+
Sbjct: 779 NNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+H +I + + L+ +L+ + ++ + + + D L P W +IR
Sbjct: 39 QLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAP-DVFTWNVMIRAY 97
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
T G + F M+ G PD +P V+ +C G HA I++G DL
Sbjct: 98 TIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAIKMGFWGDL 157
Query: 142 YTNNALMNMYAQSQNMD--MHIYDRF------------QGFGFNGGREASVHEVLDKIPE 187
Y N +MN+Y + +N+D +++D+ GF G+ + E+ +++P
Sbjct: 158 YVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGF-VACGKLDTARELFEQMPS 216
Query: 188 RN 189
+N
Sbjct: 217 KN 218
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II ++ +E+ F RM V P+ S++++CT + + G VH
Sbjct: 220 VSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDF 279
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFNGGREA- 176
++ G +L+ + AL++MY++ N+D ++D Q G +G R+
Sbjct: 280 ALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEA 339
Query: 177 -SVHEVLDKIPERNGNVELSSGLAGC 201
S+ E ++K E + L+ C
Sbjct: 340 LSIFEEMEKANEVPDAITFVGVLSAC 365
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTLKTPAPPVAWKSIIRCC 81
KQ+H Q+ K F+ S L+ +Y N + D C K V W ++I C
Sbjct: 343 GKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDV--VTWTAMISGC 400
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L +LT F ++G+G+ PD SV+ +C L R GE + + G
Sbjct: 401 VQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFT 460
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++MYA+S ++ + RFQ
Sbjct: 461 AMGNSCIHMYARSGDVHAAVR-RFQ 484
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A +H + K + FL S ++ +Y + +++ L ++ P V I C
Sbjct: 236 AAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCR 295
Query: 83 QNG-----LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+L E+L+ + + G+ P F SV+++C L D FG+ +H +++
Sbjct: 296 DEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCF 355
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
D + +AL+++Y S M+ D F+ F
Sbjct: 356 QGDDFIGSALIDLYLNSGCME----DGFRCF 382
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVH 129
V+W +++ + G + L F M SG+ + SV+K C D +VH
Sbjct: 181 VSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVH 240
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C+++ G D D++ +A++ MYA+
Sbjct: 241 GCVVKAGFDSDVFLASAMVGMYAK 264
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
S A +HA I + S FL + LL Y H L + +T A V++
Sbjct: 26 SCSAPRHAAAVHAHIVRAHPSPSLFLRNTLLAAYCRLG-GHARRLLDEMPRTNA--VSFN 82
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I ++ G SL F R S GV D + + L +C+ R G++VHA +
Sbjct: 83 LLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVL 142
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
G+ ++ +N+L++MYA+ +M
Sbjct: 143 EGIAGGVFVSNSLVSMYARCGDM 165
>gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T+ + +LL+ + + ++H I ++ + + S+LL +Y + + ++ + D
Sbjct: 93 TQIISSLLETCYRLNSIDHGMRIHRLIPTSILRKNTGVSSKLLRLYASCGYMDEAHQMFD 152
Query: 64 TLKT-PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ AW S+I ++ GL +++ + +M V PD FP VLK+C L
Sbjct: 153 EMSNRDESAFAWNSLIAGYSELGLYEDAIALYFQMDEEYVEPDEFTFPRVLKACGGLGLI 212
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ GE+VH +IRLG D + +NAL++MYA+
Sbjct: 213 QVGEAVHRDLIRLGFANDRFASNALVDMYAK 243
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H + + N RF + L+ +Y + + + + + + V+W S++
Sbjct: 215 GEAVHRDLIRLGFANDRFASNALVDMYAKCGDIVKARSIFEKMASK-DSVSWNSMLTGYV 273
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++GL++E+ RM+ G+ D S+L + + F+ G +H I+R G+ DL
Sbjct: 274 RHGLIIEAFHTGRRMLQDGLELDSVAISSLLANVS---SFKLGVQIHGWILRRGMQWDLS 330
Query: 143 TNNALMNMYA 152
N+L+ MY+
Sbjct: 331 IANSLIVMYS 340
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL N S K Q+H I + + + L+ +Y++ + + L D ++
Sbjct: 302 SLLANVSSFKL---GVQIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQTRWLFDNMQ-E 357
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V+W SII ++ + L F RM SG +PD+ F S L +C L R GES
Sbjct: 358 RDVVSWNSIISAHCKDP---QVLAYFERMENSGAFPDNITFVSALSACAHLGLVRDGES 413
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H Q+ K +S + LL +Y N DS L L+ P V W ++I
Sbjct: 630 GRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGY 689
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q ++L + M + PD F SVL++C + + G+ +H+ I G ++D
Sbjct: 690 AQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDE 749
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
T ++L++MYA+ ++ + +V ++P RN + +S + G
Sbjct: 750 VTCSSLIDMYAKCGDVKGSL------------------QVFREMPRRNNVISWNSMIVGL 791
Query: 202 NK 203
K
Sbjct: 792 AK 793
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + K ++ F+ + L+ +Y + ++ + +K V+W +II Q
Sbjct: 431 QLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIH-DNVSWNAIIVGYVQE 489
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
E+ F RM+ +GV PD S++ +C + + + G+ H ++++G+D
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAG 549
Query: 145 NALMNMYAQ 153
++L++MY +
Sbjct: 550 SSLIDMYVK 558
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+ +L ++L S+ + +HAQ K ++ ++ S L+ +Y + + + +
Sbjct: 307 ATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQV 366
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++L V W +++ QNGL E + F M G PD F S+ +C L
Sbjct: 367 FNSL-GERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
FG +H +I+ +L+ NAL++MYA+S
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKS 458
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ P P VAW +I + G E+++ F+ + +G+ + SVL + L +
Sbjct: 268 QIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNY 327
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHA + G+D ++Y +AL+NMYA+ MD
Sbjct: 328 GSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMD 361
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ +GL + FV M V P+ F VL +C+ L D FG VH +
Sbjct: 109 AWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGV 168
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
+ G + L++MYA+
Sbjct: 169 FKTGFGFRSFCQGGLIDMYAK 189
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ + + +++H+ IF T S L+ +Y V SL + +
Sbjct: 719 SVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I +NG E+L F +M + PD F VL +C+
Sbjct: 779 NNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACS 827
>gi|242076142|ref|XP_002448007.1| hypothetical protein SORBIDRAFT_06g019570 [Sorghum bicolor]
gi|241939190|gb|EES12335.1| hypothetical protein SORBIDRAFT_06g019570 [Sorghum bicolor]
Length = 458
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 22 QAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSI 77
+ +QLHA T E + FL ++L+F+Y V D+ L + + PA V +W ++
Sbjct: 89 EGRQLHAHALATGSLDEDDDGFLATKLVFMYGRCGRVDDARRLFNGM--PARTVFSWNAL 146
Query: 78 IRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+ +G E++ + M S G PD SVLK+C D R G VH ++
Sbjct: 147 VGAYLTSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVK 206
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+G+D NAL+ MYA+ +D + +++ Q
Sbjct: 207 VGLDRSTLVANALIGMYAKCGLLDSALRVFEWLQ 240
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + ++H K S + + L+ +Y L+ +L + + L
Sbjct: 180 TLASVLKACGAEGDGRCGGEVHGLAVKVGLDRSTLVANALIGMYAKCGLLDSALRVFEWL 239
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
+ +W S+I C QNG +E+L F M +GV
Sbjct: 240 QDARDVASWNSVISGCVQNGRTLEALALFRVMQSAGV 276
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TLI L+K ++ + K +H I ++ S +L + ++ +Y L+ ++ L +T
Sbjct: 212 TLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFET 271
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V W ++I + VE++ F +M+G + P+H ++L SC+ L R
Sbjct: 272 -SVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRH 330
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+SVH +IR G+++D + ++ YA+ N+ M +V D
Sbjct: 331 GKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQM------------------ARKVFDM 372
Query: 185 IPERN 189
+P+RN
Sbjct: 373 MPKRN 377
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLL-- 62
T +LK + K + KQ+H QI K + PN+ + S L+ +Y + + ++ C+L
Sbjct: 89 TYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTH-IHSSLIHMYTSSGSIVEAECVLRE 147
Query: 63 ----DTL-----------------------KTPAPPVA-WKSIIRCCTQNGLLVESLTCF 94
+TL + A VA W +II CT+NG+ E+L F
Sbjct: 148 FSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALF 207
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M+ S P+ + S+L +C L G +HA I R+G D+ + + AL++MYA+
Sbjct: 208 EDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAK 266
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF--NLVHDSLCLLDTLKTPAPPV-AW 74
K K +HAQI + FL ++L+ Y + + D+ + D L P V W
Sbjct: 18 KGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCL--PDRDVFVW 75
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+II+ G +E+L + M SGV + FP VLK+C + D + G+++H +++
Sbjct: 76 NTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVK 135
Query: 135 LGVDLDLYTNNALMNMYAQ 153
G+DLDL+ NAL+ YA+
Sbjct: 136 HGLDLDLFVGNALVAFYAK 154
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++K + + +H + K F+ + L+ Y N + S + D + +
Sbjct: 113 VLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMI-SEK 171
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMI---GSGVY-PDHNVFPSVLKSCTLLVDFRFG 125
V W S+I NG ++L F M+ G VY PD ++L +C + G
Sbjct: 172 DIVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEG 231
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H+ +I+ G++LD + L+ MYA N G S +V D+I
Sbjct: 232 LWIHSYVIKSGIELDAALGSGLIAMYA------------------NCGLLNSARDVFDRI 273
Query: 186 PERN 189
++N
Sbjct: 274 DDKN 277
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ TL+ +L + +H+ + K+ L S L+ +Y N L++ + + D
Sbjct: 212 SATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFD 271
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+ V W +IIRC +G E+L F +I SG++PD +F +L +
Sbjct: 272 RIDDK-NIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSA 322
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + + +++H T + F+ + L+ +Y L+ DS L +
Sbjct: 84 TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++ C Q+ L E++ F M+ SG+ P+ +L +C L + G
Sbjct: 144 -VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLG 202
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H ++++G+DLD ++ NAL++MY+++ ++
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIE 235
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ KQ+H K+ + ++I+ LL Y N + ++ + +
Sbjct: 387 TLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE- 445
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+T VA+ S+I +Q G E+L +++M + + PD + S+L +C L + G
Sbjct: 446 RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG 505
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I+ G D++ +N+L+NMYA+ +++
Sbjct: 506 KQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIE 538
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
+LHA + K L + L+ +Y+ + L+D + V+W S++ QN
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDE-SSELDVVSWSSLLSGYVQN 60
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G + E+L F M GV + FPSVLK+C++ D G VH + G + D +
Sbjct: 61 GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120
Query: 145 NALMNMYAQSQNMD 158
N L+ MYA+ +D
Sbjct: 121 NTLVVMYAKCGLLD 134
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + LK ++ K +QLH+ + K + F L+ +Y+ ++ D+ D++
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+AW ++I +Q G +++++ F +M + + +VLKS L +
Sbjct: 346 PKK-DIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVC 404
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H I+ G+ D Y N+L++ Y + ++D
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHID 437
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++H + K +F + L+ +Y+ + ++ + + P V+W +II C
Sbjct: 202 GRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHP-DVVSWNAIIAGCV 260
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ +L M GSG P+ S LK+C + G +H+ +I++ DL+
Sbjct: 261 LHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLF 320
Query: 143 TNNALMNMYAQSQNMD 158
L++MY++ + MD
Sbjct: 321 AAVGLVDMYSKCEMMD 336
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL ++ Q KQLH K F + L+ +Y + D+ D +
Sbjct: 491 SLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDA----DRAFSE 546
Query: 69 APP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
P V+W ++I Q+G E+L F +M+ GV P+H SVL +C
Sbjct: 547 IPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCAC 597
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+F+ + ++ + +T++ P + W ++ R N V +L +V MI G+ P+ FP
Sbjct: 11 HFDGLSYAISIFETIQEPNLLI-WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFP 69
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDR 164
+LKSC G+ +H +++LG DLD+Y N +L++MYAQ+ + D H ++DR
Sbjct: 70 FLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDR 125
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I+ QN L+E+L+ F M+ GV P++ S+L C L +G VHA ++
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R D+D++ +AL+ MY + N+D
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLD 385
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K A+++HA + + FL + L+ +Y V D+ + D ++ V+W S+
Sbjct: 65 KNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK-DMVSWTSL 123
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I QN + VE++ M+ P+ F S+LK+ D G +HA ++ G
Sbjct: 124 IAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGW 183
Query: 138 DLDLYTNNALMNMYAQSQNMDM 159
D+Y +AL++MYA+ MDM
Sbjct: 184 HEDVYVGSALLDMYARCGKMDM 205
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + +Q+HA K ++ S LL +Y + + + D L
Sbjct: 154 TFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I + G +L F M+ +G H + SV S L G
Sbjct: 214 DSK-NGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR 164
+ VHA +I+ L + N L++MYA+S +M ++DR
Sbjct: 273 KWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDR 313
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q K +HA + K+ + + F+ + LL +Y + D+ + D + V W S++
Sbjct: 271 QGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNK-DLVTWNSMLTAF 329
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q GL E+++ F M SGVY + F +L +C+
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS 365
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + K+ ++ F+ + ++ +Y+ +V D+ + D+++ V+W S+I N
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTN 272
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL +E+ F RM GV +F +V+K C + + F + +H +I+ G D DL
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332
Query: 145 NALMNMYAQSQNMD 158
ALM Y++ +D
Sbjct: 333 TALMVAYSKCSEID 346
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H Q K + + L+ +Y V D + D ++ V+W S++
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVK-NVVSWTSLLAGYR 169
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNGL ++L F +M G+ P+ F +VL G VH +I+ G+D ++
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229
Query: 143 TNNALMNMYAQS 154
N+++NMY++S
Sbjct: 230 VGNSMVNMYSKS 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA + KT NS + + L Y+ +++ + + L VAW +++ Q
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE-LIDEKDIVAWSAMLSGYAQM 471
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL-LVDFRFGESVHACIIRLGVDLDLYT 143
G + ++ F+++ GV P+ F SVL +C G+ H+C I+ G L
Sbjct: 472 GDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCV 531
Query: 144 NNALMNMYAQSQNMD 158
++AL+ MYA+ N++
Sbjct: 532 SSALVTMYAKRGNIE 546
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+I L N IK S AKQLH Q+ K + + L+ Y+ + + D+ L +
Sbjct: 299 TVIKLCAN---IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II QNG ++ F +M GV P+H + ++L + +
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP---- 411
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA +++ + AL + Y++
Sbjct: 412 SQIHALVVKTNYENSPSVGTALSDSYSK 439
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F+ + SG D + VLK C L D G+ VH I+ G D+ +L+
Sbjct: 75 EALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLV 134
Query: 149 NMYAQSQNMD 158
+MY ++++++
Sbjct: 135 DMYMKTESVE 144
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I+ QN L+E+L+ F M+ GV P++ S+L C L +G VHA ++
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R D+D++ +AL+ MY + N+D
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLD 385
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL SI ++ KQLH+ + K + LL +Y ++ ++L + +
Sbjct: 246 TIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKS- 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ Q L +S F +M+ +GV P+ +P +L++CT + G
Sbjct: 305 GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
E +H I+ G + D+Y + L++MY++ +D
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLD 397
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + IK Q +Q+H++++ + + + L+ +Y ++ L + ++
Sbjct: 449 LASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ W ++ Q+GL E+L F++M +GV + F S + + L D + G+
Sbjct: 509 HK-DKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGK 567
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA +I+ G + NAL+++Y + +++
Sbjct: 568 QIHATVIKTGCTSETEVANALISLYGKCGSIE 599
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H KT + ++ L+ +Y+ + + + +L+ L+ V+W S+I
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ E+L F M G++PD+ S + +C + R G+ +H+ + G D+
Sbjct: 423 QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS 482
Query: 143 TNNALMNMYAQ 153
NAL+N+YA+
Sbjct: 483 IWNALVNLYAR 493
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ + ++ Q KQ+HA + KT + + + L+ +Y + D+ +
Sbjct: 549 TFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEM 608
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 609 -SERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 659
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
S+K +HA+ R + L+ +Y LV + + + L + V+W
Sbjct: 54 SVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQL-SARDNVSWV 112
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+++ +NGL E++ + +M SGV P V SVL +CT F G VHA + +
Sbjct: 113 AMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQ 172
Query: 136 GVDLDLYTNNALMNMY 151
G + NAL+ +Y
Sbjct: 173 GSCSETVVGNALIALY 188
>gi|356550078|ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 315
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL S K K++HA + F+ S+L+ Y +H++ +L +
Sbjct: 13 TLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEA-NILFSFTIR 71
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P + S+IR + L +SL F +M+ + D + P VLKSC L R G+ V
Sbjct: 72 QPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCAGLSALRLGQQV 131
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR------------FQGFGFNGGR 174
H ++ G LDL +NAL+NMY++ ++ ++DR G+G + G+
Sbjct: 132 HGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFSTMMAGYGMH-GK 190
Query: 175 EASVHEVLDKI---PERNGNVELSSGLAGCN 202
V E+ DK+ ER V ++ L+ C+
Sbjct: 191 CGEVFELFDKMVEAGERPDGVTFTAVLSACS 221
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT K+ HAQ+ F+ +RL+ Y++F+ + + + D L P +
Sbjct: 31 KTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEP-DVFCCNVV 89
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I+ E+L + M G+ P++ +P VLK+C + G +H ++ G+
Sbjct: 90 IKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGM 149
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
DLDL+ NAL+ YA+ Q++++ +V D+IP R+
Sbjct: 150 DLDLFVGNALVAFYAKCQDVEVS------------------RKVFDEIPHRD 183
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H I KT + + L+ +Y+N V + + D + + + W +IIRC +G
Sbjct: 243 IHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRI-SDRSVIVWSAIIRCYGTHG 301
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L E+L F +++G+G+ PD VF +L +C+
Sbjct: 302 LAQEALALFRQLVGAGLRPDGVVFLCLLSACS 333
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I T NG + +++ F M+ S PDH F +VL + D G +H
Sbjct: 185 VSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIH 244
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
I++ + LD L+++Y+ + M I+DR
Sbjct: 245 CYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDR 281
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I QNG E++ F RM +GV PD F SVL +C L F G VH
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEY 237
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN-- 189
I+ G+DL++ +L+NMY + N+ + EV D + ERN
Sbjct: 238 IVGNGLDLNVVLGTSLINMYIRCGNV------------------SKAREVFDSMKERNVV 279
Query: 190 GNVELSSGLAGCNKFEKRVVSAGHD 214
+ SG G N + + V H+
Sbjct: 280 AWTAMISGY-GTNGYGSQAVELFHE 303
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 29/191 (15%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAP-PVAWKSIIRCC 81
Q+HA I + SR L+++LL N S+ L P P + S+I+
Sbjct: 30 QVHAHIIVSGYGRSRSLLTKLL----NLACAAGSISYTRQIFLAVPNPDSFLFTSLIKST 85
Query: 82 TQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ + + SL + RM+ S V P + F SV+KSC L + G VH ++ G LD
Sbjct: 86 SKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLD 145
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
+Y AL+ +Y + ++ + +V DKI ER+ V +S ++G
Sbjct: 146 VYVQAALVALYGKCGDL------------------INARKVFDKIRERS-IVAWNSMISG 186
Query: 201 C--NKFEKRVV 209
N F K +
Sbjct: 187 YEQNGFAKEAI 197
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 62/265 (23%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN------------ 53
TL+ +LK S S KQ+H Q+ K + + S LL +Y+
Sbjct: 138 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGL 197
Query: 54 -------------------LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94
++ D+L L ++ + V+W ++I+ QNG+ E++ CF
Sbjct: 198 DDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDS--VSWSAMIKGLAQNGMEKEAIECF 255
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
M G+ D F SVL +C L G +HACIIR + +Y +AL++MY +
Sbjct: 256 REMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKC 315
Query: 155 QNMDMH--IYDRFQ------------GFGFNGGREASVHEVLDKIPERNG----NVELSS 196
+ + ++DR + G+G G +V LD +R+G + L
Sbjct: 316 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDM--QRSGIDPDHYTLGQ 373
Query: 197 GLAGC---------NKFEKRVVSAG 212
++ C ++F + ++AG
Sbjct: 374 AISACANISSLEEGSQFHGKAITAG 398
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA I +T + ++ S L+ +Y +H + + D +K V+W +++
Sbjct: 286 GRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYG 344
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E++ F+ M SG+ PDH + +C + G H I G+ +
Sbjct: 345 QTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYIT 404
Query: 143 TNNALMNMYAQSQNMD 158
+N+L+ +Y + ++D
Sbjct: 405 VSNSLVTLYGKCGDID 420
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
SQ KQ+H +I K N + L+ +L+ + ++F + + + L++P+ W +IR
Sbjct: 34 SQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPST-FTWNLMIRS 92
Query: 81 CTQNGLLVESLTCFV-RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ N E+L F+ MI D FP V+K+C R G VH I+ G
Sbjct: 93 LSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFN 152
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
D++ N LM++Y F G+ S +V DK+P R+
Sbjct: 153 DVFFQNTLMDLY------------------FKCGKPDSGRKVFDKMPGRS 184
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I+ QN L+E+L+ F M+ GV P++ S+L C L +G VHA ++
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R D+D++ +AL+ MY + N+D
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLD 385
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ + + F F+ S LL +Y+ + D++ + D + VAW +++
Sbjct: 130 AEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRK-DHVAWSTMVAGFV 188
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G VE+L + RM GV D V V+++CTL + R G SVH +R G+ +D+
Sbjct: 189 SAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVV 248
Query: 143 TNNALMNMYAQSQNMDM 159
+L++MYA++ + D+
Sbjct: 249 IATSLVDMYAKNGHFDV 265
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG E+L F M SG+ PD S L +C + + G+S+H
Sbjct: 279 VSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGF 338
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+R ++ A+++MY++ +++
Sbjct: 339 ILRR-LEFQCILGTAVLDMYSKCGSLE 364
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K +H I + LE L + +L +Y+ + + L + L + V W ++I CC
Sbjct: 332 GKSIHGFILRRLEFQC-ILGTAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAMIACCG 389
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+G ++L F + +G+ PDH F S+L +
Sbjct: 390 THGCGHDALALFQELNETGIKPDHATFASLLSA 422
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F L S + L+ Y + D++ L + + T AW +II C+QN L
Sbjct: 116 KLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERM-TERDVAAWNAIITGCSQNRLFA 174
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F RM+G+G+ P+ VL +C L + G+ +H C R V N L+
Sbjct: 175 EAVGIFGRMVGTGLRPNATTISCVLSACGHLGMLKIGKLIHCCAWRTCVGFGSSVLNGLI 234
Query: 149 NMYAQSQNMD 158
+MY + N++
Sbjct: 235 DMYGKCGNLE 244
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ L +LL+ + A H F+ F+ + L+ Y V D+ + D
Sbjct: 70 RALPSLLRAIALARFPGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDG 129
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ VAW ++ C Q E+L F M S V PD + +VL +C + RF
Sbjct: 130 MPD-RDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRF 188
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGF 170
G+++H+ ++ +D + ALMNMYA +M+M +Y+R G+
Sbjct: 189 GKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAK 248
Query: 171 NGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206
NG E + H + + +PE++ V S+ +AG + K
Sbjct: 249 NGKVEIA-HSIFNGMPEKD-VVSWSAMIAGYAESSK 282
>gi|125556054|gb|EAZ01660.1| hypothetical protein OsI_23695 [Oryza sativa Indica Group]
Length = 252
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA++ + FL +RL+ +Y + D+ +LD + + V+W ++I
Sbjct: 28 EGRKVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV-VSWTTMISGY 86
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q VE+L F++M+ +G P+ +VL SC+ G+ VH+ +++ + +
Sbjct: 87 SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 146
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MYA+S+N+ V D +PER+
Sbjct: 147 FVGSSLLDMYAKSENIQ------------------EARRVFDTLPERD 176
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ Q KQ+H+ + KT + F+ S LL +Y + ++ + DTL
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F ++ G+ +H F +++ + + L +G
Sbjct: 173 P-ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231
Query: 126 E 126
+
Sbjct: 232 K 232
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK + + KQ+HA IFK ++ + L+ +Y + + D+ + D + +
Sbjct: 125 VLKACATCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRS 184
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I C QN L +++ FV+M G P+ +L C + + G +H
Sbjct: 185 I-VSWNSVITACVQNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIH 243
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ 166
+ +I G+ L+ AL++MYA+S ++ ++DR +
Sbjct: 244 SQVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRME 282
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
Q+HAQI + L+ ++ L + F + + +L + L ++L + P W +I
Sbjct: 35 HVSQIHAQILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLPP---WNFLI 91
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
R ++ F RM GV P++ FP VLK+C + G+ VHA I + G+D
Sbjct: 92 RGYASGDAPKNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLD 151
Query: 139 LDLYTNNALMNMYAQSQNM 157
D+Y NN L+++Y + +
Sbjct: 152 CDVYVNNNLVHLYGSCKRI 170
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-TL 65
L +LL + ++ A Q+H QI + FL + L+ +Y ++ +L L T
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I + + +++L+ F +M SG YP+ F S+L + + G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H+ I + G D +++ AL++MYA+ DMH S V D++
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCA--DMH----------------SAVRVFDQM 306
Query: 186 PERN 189
PERN
Sbjct: 307 PERN 310
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + +QLH+ I K + F+ + L+ +Y +H ++ + D +
Sbjct: 247 TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 306
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRF 124
V+W S+I N L ++ F ++ V P+ SVL +C + F
Sbjct: 307 P-ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNF 365
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH +++ G+ Y N+LM+MY + + D
Sbjct: 366 GRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFD 399
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++ QN E+ F M G+ PD F +VL S L G ++H
Sbjct: 414 VTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQ 473
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
II+LG ++ +L+ MYA+ ++ + Y F+G
Sbjct: 474 IIKLGYVKNMCILGSLITMYAKCGSL-VDAYQVFEG 508
>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 529
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F+ + S ++ Y V + L + ++ AW ++I C QNG
Sbjct: 204 EMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAR 263
Query: 89 ESLTCFVRMIGSGV--YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
E++ F RM+ V P+ F SV +C+ L + RFG V + ++ LG++LD + A
Sbjct: 264 EAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDDHLRTA 323
Query: 147 LMNMYAQSQNMDMHIYDRFQGF 168
L+++Y +S +D +D F+G
Sbjct: 324 LVDLYTKSGQID-RAFDLFKGL 344
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + K+ ++ F+ + ++ +Y+ +V D+ + D+++ V+W S+I N
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTN 272
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL +E+ F RM GV +F +V+K C + + F + +H +I+ G D DL
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332
Query: 145 NALMNMYAQSQNMD 158
ALM Y++ +D
Sbjct: 333 TALMVAYSKCSEID 346
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+I L N IK S AKQLH Q+ K + + L+ Y+ + + D+ L +
Sbjct: 299 TVIKLCAN---IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTL-LVDFR 123
V+W +II QNG ++ F +M GV P+ F SVL +C
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVE 415
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ H+C I+ G L ++AL+ MYA+ N++
Sbjct: 416 QGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIE 450
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H Q K + + L+ +Y V D + D ++ V+W S++
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVK-NVVSWTSLLAGYR 169
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNGL ++L F +M G+ P+ F +VL G VH +I+ G+D ++
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229
Query: 143 TNNALMNMYAQS 154
N+++NMY++S
Sbjct: 230 VGNSMVNMYSKS 241
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F+ + SG D + VLK C L D G+ VH I+ G D+ +L+
Sbjct: 75 EALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLV 134
Query: 149 NMYAQSQNMD 158
+MY ++++++
Sbjct: 135 DMYMKTESVE 144
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K S+ +QLHA + K+ + L+ +Y N++ D+L + +
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRM 225
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRF 124
T ++W S+I +Q G +E+L F M+ GVY P+ +F SV +C+ L+ +
Sbjct: 226 ATR-DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEY 284
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H I+ G+ D++ +L +MYA+
Sbjct: 285 GRQLHGMSIKFGLGRDVFAGCSLCDMYAK 313
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ +++H + K+ L + +L +Y + D+ + D + V+W S
Sbjct: 76 LRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAM-PERNVVSWTS 134
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I +QNG +L + +M+ SGV PD F S++K+C+ L D G +HA +++
Sbjct: 135 VIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSE 194
Query: 137 VDLDLYTNNALMNMYAQS 154
+ NAL++MY +S
Sbjct: 195 FGAHIIAQNALISMYTKS 212
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II G E++ F +M G+ PD S+L +CT + G VH
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGY 392
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
I ++G+DLD+ N L+ MYA+ + I+
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAKCSELRDAIF 423
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S Q Q+H I K + + LL +Y + + D++ + +
Sbjct: 369 TVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEM 428
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ A V+W +I+ C + E M S PD+ +VL + V G
Sbjct: 429 RCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIG 488
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++ G++ D+ N L+++YA+
Sbjct: 489 NQVHCYALKTGLNCDISVTNGLIDLYAK 516
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S ++H ++ K + + + LL +Y + + D+ DT+ VAW SI+
Sbjct: 117 SVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPI-RDVVAWSSIVLN 175
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG E L F +MI V PD SV ++C+ L R G SVH ++R ++ +
Sbjct: 176 FVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESN 235
Query: 141 LYTNNALMNMYAQ 153
NN+L+ MY +
Sbjct: 236 ASLNNSLIVMYGK 248
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+I Q+H I KT N F+ + L+ +Y VH + + + +K + V W
Sbjct: 416 TISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSL-VTWN 473
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I +QNG VE++T F +M + V D F SV+++C+ L G+ VH +I
Sbjct: 474 SMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMY 533
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGFNGGREASV 178
G+ D Y + AL +MY++ + M ++DR G+G +G A++
Sbjct: 534 GLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATI 590
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 10/145 (6%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T + QLHA +F T ++L+ Y + S + DT P W +I
Sbjct: 13 TSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP-DSFMWGVLI 71
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHN-----VFPSVLKSCTLLVDFRFGESVHACII 133
+C G E+++ + M VY D VFPSVLK+C+ D G VH +I
Sbjct: 72 KCYVWGGFFEEAVSLYHEM----VYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI 127
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ G + D +L+ MY + +D
Sbjct: 128 KCGFESDAVVETSLLCMYGEMSCLD 152
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ +L + + + +H + + ++P FL L+ +Y + + D + +T
Sbjct: 304 TMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFET 363
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K ++W ++I T+NG E+L FV+M G+ PD S L +C + +
Sbjct: 364 IKEKTI-LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQL 422
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H II+ G + + + NAL++MYA+
Sbjct: 423 GAQIHGYIIKTG-NFNDFVQNALIDMYAK 450
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--KTPAPPVAWKSIIRC 80
+ +H + + ++ L + L+ +Y ++ + L + + + AP W +I C
Sbjct: 220 GRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP---WTPMISC 276
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q+G E+L F +M + P+ VL +C L + G SVH +IR +D +
Sbjct: 277 YNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPE 336
Query: 141 L-YTNNALMNMYAQSQNM-DMH 160
L + ALM +YA + N+ D H
Sbjct: 337 LDFLGPALMELYADTGNLRDCH 358
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLL 119
+ ++ P W ++IR + G V +++ + M SG V PD + +P +LK+ +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKM 134
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
D R GE++H+ +IR G +Y N+L+++YA N G AS +
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYA------------------NCGDVASAY 176
Query: 180 EVLDKIPERN 189
+V DK+PE++
Sbjct: 177 KVFDKMPEKD 186
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T LLK + + +H+ + ++ + ++ + LL +Y N V + + D
Sbjct: 121 THTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180
Query: 64 TLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P VAW S+I +NG E+L + M G+ PD S+L +C +
Sbjct: 181 --KMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGAL 238
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ H +I++G+ +L+++N L+++YA+
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYAR 269
>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
Length = 601
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + TL +LL V + + +++H K F+ + L+ +Y F + +
Sbjct: 139 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 198
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + +K V+W ++I QNG E+ M SG P+ +VL +C +
Sbjct: 199 IFEQMKDR-NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMA 257
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ G+ +HA IR G+ DL+ +NAL++MY++ + + +I++R
Sbjct: 258 SLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 303
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ +Y F V S+ + D + V+W S I C G + L F +M
Sbjct: 78 LANALVDMYGKFGDVEASMQVFDGM-LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEH 136
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V P S+L + L F G VH I+ +DLD++ N+L++MYA+
Sbjct: 137 NVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAK 189
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ NG+ ++ V M+ SG + SV+ +C + +FG S+HA
Sbjct: 7 VSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHAL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ-----------GFGFNGGREASV 178
+++G++ + NAL++MY + +++ M ++D G N G V
Sbjct: 67 AVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDV 126
Query: 179 HEVLDKIPERN---GNVELSS 196
+ K+ E N G++ LSS
Sbjct: 127 LRMFRKMSEHNVMPGSITLSS 147
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+N+L + + KQ+HA + F+ + L+ +Y+ + + + +
Sbjct: 245 TLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-- 302
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ V++ ++I +Q+ ESL F +M G+ D F L +CT L F+ G
Sbjct: 303 RSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG 362
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H ++R + + +N+L+++Y +
Sbjct: 363 KEIHCVLVRRLLSGHPFLSNSLLDLYTK 390
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 1/159 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T ++L ++ + +Q+HA K + F+ S L+ +Y + D+
Sbjct: 321 MPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKK 380
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D T V W +I+ QN L E++ F M + + D F SVL +C L
Sbjct: 381 VFD-FSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLY 439
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G VH I+ G+D DL+ NA+++MY++ +D+
Sbjct: 440 SLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDV 478
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+H K+ L ++ IS L+ IY L+ D+ LL+ + V W + I
Sbjct: 646 GKQVHCYTLKSAILNQDTSLGIS-LVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISG 704
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG V+SL F RM V D F SVLK+C+ + G+ +H I++ G
Sbjct: 705 YAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSY 764
Query: 141 LYTNNALMNMYAQ 153
+ALM+MY++
Sbjct: 765 ETATSALMDMYSK 777
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D+ LL ++ + VAW ++I +Q+GL E + M G+ P + F S+L +
Sbjct: 276 DARTLLKRIRMTST-VAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAA 334
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ F G +HA ++ G+D +++ ++L+N+Y +
Sbjct: 335 ANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVK 371
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + + K++H I K+ + S L+ +Y+ V S + L
Sbjct: 732 TFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKEL 791
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K + W S+I +NG E+L F +M S + PD VL +C+
Sbjct: 792 KNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACS-------- 843
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA +I G L+ +++ +Y +D H G GG EV+D++
Sbjct: 844 ---HAGLISEG----LHFFDSMSQVYGIVPRVD-HYACLIDLLG-RGGHLQKAQEVIDQL 894
Query: 186 PERNGNVELSSGLAGC--NKFEKR 207
P R V ++ LA C +K E+R
Sbjct: 895 PFRADGVIWATYLAACQMHKDEER 918
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T IN N +I+T KQ+H+ K ++ + S L+ +Y+ F V S +L
Sbjct: 528 SFATAINACSNIWAIET---GKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 584
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + V ++I QN E++ F +++ G P + F S+L CT V
Sbjct: 585 AHVDASSI-VPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSS 643
Query: 123 RFGESVHACIIRLGV-DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ VH ++ + + D +L+ +Y + + ++ +++
Sbjct: 644 VIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLE------------------DANKL 685
Query: 182 LDKIPERNGNVELSSGLAG 200
L+++P+ VE ++ ++G
Sbjct: 686 LEEVPDHKNLVEWTATISG 704
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L +++ + +Q+H K F+ + +L +Y+ + D L +L
Sbjct: 427 TFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAI-DVAKALFSL 485
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I N E++ RM G+ D F + + +C+ + G
Sbjct: 486 IPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETG 545
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H+ I+ V + ++L+++Y++
Sbjct: 546 KQIHSASIKYNVCSNHAVGSSLIDLYSK 573
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLV-HDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
LHA+I + P L L+ +Y V + L PA A S++ C ++
Sbjct: 75 LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134
Query: 85 GLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G + L F R+ S G PD VL +C+ L G VH +++ G ++
Sbjct: 135 GSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFC 194
Query: 144 NNALMNMYAQSQNMD 158
L++MYA+ +D
Sbjct: 195 QAGLVDMYAKCGEVD 209
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA 73
S K Q +QLHA KT +S FL ++ + +Y +D++ + D + +
Sbjct: 57 ASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM-SERTIFT 115
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I C G VE++ + M GV D FP VLK+C + R G +H +
Sbjct: 116 WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAV 175
Query: 134 RLGVDLDLYTNNALMNMYAQSQNM 157
+ G ++ NAL+ MYA+ ++
Sbjct: 176 KCGYGGFVFVCNALIAMYAKCGDL 199
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+K++ K++H + K + + + ++ +Y LV + + +++ + V+W S
Sbjct: 466 LKSEKLIKEIHGYVLKGGLADI-LIQNAIVNVYGELALVDYARHVFESINSK-DIVSWTS 523
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I CC NGL +E+L F +I + + PD SVL + L + G+ +H +IR G
Sbjct: 524 MITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKG 583
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
L+ N+L++MYA+ M+
Sbjct: 584 FFLEGLIANSLVDMYARCGTME 605
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT-LKTP 68
+LK + K + ++H K F+ + L+ +Y + + L D+ L
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEK 213
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
PV+W SII G +E+L+ F RM GV + F S L++C + G +
Sbjct: 214 DDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI 273
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
HA I++ D+Y +NAL+ MYA M+
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQME 303
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 2 TSTKTLINLLK---NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDS 58
++T T ++ L+ P IK + +HA I K+ ++ + L+ +Y N + D+
Sbjct: 249 SNTYTFVSALQACEGPTFIKI---GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDA 305
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLK 114
+ ++ V+W +++ QN + +++ F M SG PD N+ + +
Sbjct: 306 ERVFKSM-LFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGR 364
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
S LL G VHA I+ G+D +++ N+L++MY +
Sbjct: 365 SANLLA----GMEVHAYAIKHGIDSNMHIGNSLIDMYGK 399
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II C NG+L E L FV M+ GV P++ SV+++C+L+ VHA
Sbjct: 203 VSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACSLMGASELFSPVHAL 262
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
++ L ++ D N+L+ MYA++ ++ I+ F+GF G S +VL +
Sbjct: 263 VVLLELEHDASVVNSLIMMYAKNGFVEEAIW-LFRGFYLKSGNVCSNEDVLAAV 315
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA K S + + L+ +Y F + + + + +K V+W +II C ++
Sbjct: 331 VHAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVK-DIVSWNTIISCLAKSD 389
Query: 86 LLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ E++ F + G+ PD S+L++C+ G+ +H I++ G D+
Sbjct: 390 RVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSI 449
Query: 144 NNALMNMYAQSQNMDMH--IYDRF 165
NAL+ MYA+ +D I++R
Sbjct: 450 CNALITMYAKLGRIDFAEMIFERM 473
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLIS-RLLFIYNNFNLVHD 57
T+ + LL+ + + + LHA + K+ P + + LL Y L+
Sbjct: 24 TAPPASVALLREAAARRDAALTSALHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSR 83
Query: 58 SLCLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSG-----VYPDHNVFPS 111
+L LLD TP A + S+I + G +++L F+ M+ G V P+ +
Sbjct: 84 ALRLLD--GTPRRDAATYASLISAHCRLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAA 141
Query: 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
VL++C L D R G VH ++ G D + +L+NMYA++ ++
Sbjct: 142 VLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDV 187
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 52 FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF--VRMIGSGVYPDHNVF 109
F+ VH + LL+ L+ A V S+I +NG + E++ F + V + +V
Sbjct: 256 FSPVHALVVLLE-LEHDASVV--NSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVL 312
Query: 110 PSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+VL CT+ + G VHA I++G + N+LM MYA+ + +D
Sbjct: 313 AAVLYGCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQID 361
>gi|297720781|ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa Japonica Group]
Length = 542
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTLKTPAPPVAWKSIIRCC 81
KQ+H Q+ K F+ S L+ +Y N + D C + K V W +++ C
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDI--VTWTAMVSGC 395
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L ++L+ F +G+G+ PD SV+ +C L R GE + + G D
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++MYA+S ++D RFQ
Sbjct: 456 VMGNSCVHMYARSGDVDAATR-RFQ 479
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T A+ +H + K + FL+S ++ +Y + ++ L +++ P + I
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286
Query: 79 RCCTQNGLL-----VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
C ++ E+LT + + G+ P F SVL++C L FG+ +H +I
Sbjct: 287 GFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVI 346
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
+ D + +AL+++Y S M+ D F+ F R + H+++ +G V+
Sbjct: 347 KYTFQEDDFIGSALIDLYFNSGCME----DGFRCF-----RSSPKHDIVTWTAMVSGCVQ 397
Query: 194 LSSGLAGCNKFEKRVVSAGHDA 215
N+ ++ +S H++
Sbjct: 398 --------NELHEKALSLFHES 411
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V++ +I ++ GL SL R +GV D + + L +C+ R G +VHA
Sbjct: 74 AVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHA 133
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
I G+ ++ +N+L++MY++ M
Sbjct: 134 LAILDGLSSGVFVSNSLVSMYSKCGEM 160
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT +Q QLHA KT + F IS+ L + +L + +L T P AW ++
Sbjct: 11 KTLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAA-SFFHSLPTLPPLFAWNTL 69
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
IR SLT F + S + PD+ +P VLK+C G ++H+ ++ G
Sbjct: 70 IRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHSLTLKTGF 129
Query: 138 DLDLYTNNALMNMYAQ 153
+ NAL+NMYA+
Sbjct: 130 RSHRHVGNALLNMYAE 145
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH+ KT + R + + LL +Y V + + D + T V+W S+I +
Sbjct: 120 LHSLTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEM-TDRDVVSWSSLIAAYVASN 178
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+++ F M P+ S+L +CT ++ R GES+H+ + G+++D+
Sbjct: 179 SPLDAFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGT 238
Query: 146 ALMNMYAQSQNMD 158
AL MYA+ +D
Sbjct: 239 ALFEMYAKCGEID 251
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +N+L S+ + KQ+HAQI ++ + + + L +Y V D+ + + L
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+AW ++I +G L E+ F RM+ V PD + ++L +C G
Sbjct: 308 PNR-DVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG 366
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +HA ++ G+ D+ NAL+NMY+++ +M +V D++
Sbjct: 367 KEIHARAVKDGLVSDVRFGNALINMYSKAGSMK------------------DARQVFDRM 408
Query: 186 PERN--GNVELSSGLAGCNK 203
P+R+ L G A C +
Sbjct: 409 PKRDVVSWTALVGGYADCGQ 428
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+ LL++ V K + KQ+H I + ++PN ++I+ LL +Y + V+++ L D
Sbjct: 48 VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNV-YIINTLLKLYVHCGSVNEARRLFDKFS 106
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ V+W +I GL E+ F M G+ PD F S+L +C+ +G
Sbjct: 107 NKSV-VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGR 165
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++ G+ + NAL++MYA+
Sbjct: 166 EVHVRVMEAGLANNATVGNALISMYAK 192
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K++HA+ K L + RF + L+ +Y+ + D+ + D + V+W +++
Sbjct: 366 GKEIHARAVKDGLVSDVRFG-NALINMYSKAGSMKDARQVFDRM-PKRDVVSWTALVGGY 423
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
G +VES + F +M+ GV + + VLK+C+ V ++G+ +HA +++ G+ DL
Sbjct: 424 ADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADL 483
Query: 142 YTNNALMNMY 151
NALM+MY
Sbjct: 484 AVANALMSMY 493
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L S + +++H ++ + N+ + + L+ +Y V D+ + D +
Sbjct: 147 TFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++ ++G ESL + M+ GV P + +VL +C L G
Sbjct: 207 ASR-DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG 265
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +HA I+ D+ + AL MY
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMY 291
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
++ NPV++K K++HA++ K + + L+ +Y V D++ + + +
Sbjct: 454 VLKACSNPVALK---WGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMS 510
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
T V W ++I QNG +E+L F M + P+ F +V+ +C +
Sbjct: 511 TR-DVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRV 561
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMD 158
G D + +L+SC D G+ VH I+R G+ ++Y N L+ +Y S N
Sbjct: 39 GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98
Query: 159 MHIYDRF 165
++D+F
Sbjct: 99 RRLFDKF 105
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+ +LK I + KQ+HAQI ++ +S ++ S L+ Y+ + + + D
Sbjct: 92 TFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFD 151
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ T V W +++ + G++ E+L F M G+ PD VL +C ++
Sbjct: 152 EI-TERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALD 210
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VHA I + + +DL N AL+NMYA+
Sbjct: 211 IGKWVHAYIKKRMIHVDLELNTALINMYAK 240
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 35/177 (19%)
Query: 24 KQLHAQIFKTLEPNSR--FLISRLLFI-----YNNFNLVHDSLCLLDTLKTPAPPV-AWK 75
+Q+HA+I + P S FLIS++L + NF+ + P P + A+
Sbjct: 5 RQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFS-----QIPNPGIFAYN 59
Query: 76 SIIRCCTQNGLLV-ESLTCFVRMIGSGVYPDHNVFPS--VLKSCTLLVDFRFGESVHACI 132
S+IR C + E + F M+G G YP+ N F VLK+C++++ G+ +HA I
Sbjct: 60 SVIRGCLYTKIPSKEPIHLFKDMVGKG-YPNPNTFTMAFVLKACSIIMALEEGKQIHAQI 118
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+R G Y ++L+N Y++ + + + +V D+I ERN
Sbjct: 119 LRSGFSSSPYVQSSLVNFYSKCEEITI------------------ARKVFDEITERN 157
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ + K +++HAQ+ +L ++LL ++ + S L D L +
Sbjct: 97 LLQECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDL-SKK 155
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
++W ++I Q GL E L + M SG+ PD F SV ++C L G+ H
Sbjct: 156 SLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAH 215
Query: 130 ACIIRLGVDLDLYTNNALMNMY 151
+I+ + ++ N+ALM+MY
Sbjct: 216 CVMIKSQIKENVVVNSALMDMY 237
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLL 119
+ ++ P W ++IR + G + + + + M SG V PD + +P ++K+ T +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM 134
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
D R GE++H+ +IR G +Y N+L+++YA N G AS +
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYA------------------NCGDVASAY 176
Query: 180 EVLDKIPERN 189
+V DK+PE++
Sbjct: 177 KVFDKMPEKD 186
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T L+K ++ + +H+ + ++ + ++ + LL +Y N V + + D
Sbjct: 121 THTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180
Query: 64 TLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P VAW S+I +NG E+L + M G+ PD S+L +C +
Sbjct: 181 --KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH +I++G+ +L+++N L+++YA+
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYAR 269
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH I K + F+ S L+ Y+ HD+L + + + T V W SII Q
Sbjct: 134 RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMIT-GDLVVWNSIIGGFAQ 192
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L + RM + D + SVL++CT L G VH +++ D DL
Sbjct: 193 NSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLIL 250
Query: 144 NNALMNMYAQSQNMD 158
NNAL++MY + +++
Sbjct: 251 NNALLDMYCKCGSLE 265
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
QA+ +H +F FLI+ L+ +Y F L+ ++ L D + V+W ++I
Sbjct: 33 QQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM-PDRNVVSWTTMISA 91
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ + L ++L + M+ GV P+ + SVL++C L++ R +H I+++G++ D
Sbjct: 92 YSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLESD 148
Query: 141 LYTNNALMNMYAQ 153
++ +AL++ Y++
Sbjct: 149 VFVRSALIDTYSK 161
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + +Q+H + K L + LL +Y + D+ L +
Sbjct: 217 TLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANLLFTRM 274
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T ++W ++I QNG ++L F M G P++ VL +C+
Sbjct: 275 MTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACS 326
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL V+ K Q +QLHA + K+ S FL ++L+ +Y + D++ + D + +
Sbjct: 52 LLDLCVAAKALPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEM-SER 108
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
+W +++ +G +E++ + M GV D FPSVLK+C L + R G +H
Sbjct: 109 TIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G ++ NAL+ MY + ++
Sbjct: 169 GVAVKCGYGEFVFVCNALIAMYGKCGDL 196
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L+ +K+++ +++H +FK + L + ++ +Y + + +++++
Sbjct: 455 SVLRACSGLKSRNFIREIHGYVFKR-DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSK 513
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S+I CC NGL VE+L F + + + PD S L + L + G+ +
Sbjct: 514 -DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEI 572
Query: 129 HACIIRLGVDLDLYTNNALMNMYA 152
H +IR G L+ ++L++MYA
Sbjct: 573 HGFLIRKGFFLEGPIASSLVDMYA 596
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-T 64
T ++LK ++ ++H K F+ + L+ +Y + + L D
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W SII G +E+L+ F RM GV + F + L+ +
Sbjct: 207 MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H +++ D+Y NAL+ MYA+ M+
Sbjct: 267 GMGIHGAVLKSNHFADVYVANALIAMYAKCGRME 300
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + K+ ++ + L+ +Y + D+ + +++ V+W +++ QN
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLLSGLVQNE 328
Query: 86 LLVESLTCFVRMIGSGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
L ++L F M SG PD N+ + +S LL G+ VHA IR G+D ++
Sbjct: 329 LYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLK----GKEVHAYAIRNGLDSNM 384
Query: 142 YTNNALMNMYAQ 153
N L++MYA+
Sbjct: 385 QIGNTLVDMYAK 396
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II QN +E++ F ++ G+ D + SVL++C+ L F +H
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + + D+ NA++N+Y + ++D
Sbjct: 476 VFKRDL-ADIMLQNAIVNVYGEVGHID 501
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + TL +LL V + + +++H K F+ + L+ +Y F + +
Sbjct: 318 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 377
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + +K V+W ++I QNG E+ M SG P+ +VL +C +
Sbjct: 378 IFEQMKDR-NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMA 436
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ G+ +HA IR G+ DL+ +NAL++MY++ + + +I++R
Sbjct: 437 SLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 482
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ +Y F V S+ + D + V+W S I C G + L F +M
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGM-LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEH 315
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V P S+L + L F G VH I+ +DLD++ N+L++MYA+
Sbjct: 316 NVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAK 368
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ NG+ ++ V M+ SG + SV+ +C + +FG S+HA
Sbjct: 186 VSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHAL 245
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ-----------GFGFNGGREASV 178
+++G++ + NAL++MY + +++ M ++D G N G V
Sbjct: 246 AVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDV 305
Query: 179 HEVLDKIPERN---GNVELSS 196
+ K+ E N G++ LSS
Sbjct: 306 LRMFRKMSEHNVMPGSITLSS 326
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+N+L + + KQ+HA + F+ + L+ +Y+ + + + +
Sbjct: 424 TLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-- 481
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ V++ ++I +Q+ ESL F +M G+ D F L +CT L F+ G
Sbjct: 482 RSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG 541
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H ++R + + +N+L+++Y +
Sbjct: 542 KEIHCVLVRRLLSGHPFLSNSLLDLYTK 569
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
TL ++L + + K+LH I K S ++ S ++ +Y +L H + +
Sbjct: 452 TLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGI 511
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V W S+I C+QNG E++ F +M +G D + L +C L
Sbjct: 512 ----SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 567
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+G+ +HA ++R DL+ +AL++MY++ N+D+
Sbjct: 568 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDL 604
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L+++L+ SQ +Q HAQ+ + L ++LL +Y D+ + L+
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
W +IR T G +L + +M+G G PD FP V+K+C L G
Sbjct: 109 LWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQS 154
VH I +G +LD++ ++L+ Y+++
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
QLH + + LE +S + + LL +Y + D+ L D + V W +I
Sbjct: 267 GSQLHGLVVSSGLEMDSP-VANTLLAMYAKCGHLFDARRLFDMMPK-TDLVTWNGMISGY 324
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG + E+ F MI + + PD F S L + R G+ +H IIR GV LD+
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384
Query: 142 YTNNALMNMYAQSQNMDM--HIYDR 164
+ +AL+++Y + ++++M I+D+
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQ 409
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T Q K++H I + FL S L+ IY V + + D +TP V ++I
Sbjct: 364 TLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQ-RTPVDIVVCTAMI 422
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
NG+ +L F ++ + + SVL +C L G+ +H I++ G
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482
Query: 139 LDLYTNNALMNMYAQSQNMDM 159
Y +A+M+MYA+ +D+
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDL 503
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ Y+ +HD+ L D + + V W ++ +NG + F+ M
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ P+ F VL C + FG +H ++ G+++D N L+ MYA+
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCG---- 297
Query: 160 HIYD 163
H++D
Sbjct: 298 HLFD 301
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++HA + + + F S L+ +Y+ + + + DT++ V+W SII
Sbjct: 570 GKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSIIAAYG 628
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L +SL F M+G G+ PDH F +++ +C
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISAC 662
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ Y LV ++ L D + VAW ++I + + CF M+
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPD-RDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
G P+ SVLKSC + +G VH +++LG++ LY +NA+MNMYA
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYA 157
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ +I + +QLH +IF+ + L + L+ +Y + DS + +
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S++ +G E++ F +M+ SG+ PD VF +VL +C
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACR-------- 426
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA ++ G L N + + Y N D IY+ G+ +E+++++
Sbjct: 427 ---HAGLVEKG----LKYFNVMESEYG--INPDRDIYNCVVDLLGRAGKIGEAYELVERM 477
Query: 186 PERNGNVELSSGLAGC 201
P + + L C
Sbjct: 478 PFKPDESTWGAILGAC 493
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ SI + + KQ+HA + K ++ +++ +L +Y + ++ ++
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-D 278
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W ++I ++ E+L F R G P+ F S++ +C + G+ +H
Sbjct: 279 LITWNTLISELERSDS-SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHG 337
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ------SQNMDMHIYDR---------FQGFGFNG-GR 174
I R G + ++ NAL++MYA+ SQ + I DR G+G +G G
Sbjct: 338 RIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGA 397
Query: 175 EASVHEVLDKI 185
EA E+ DK+
Sbjct: 398 EAV--ELFDKM 406
>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Vitis vinifera]
Length = 751
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ + +H I K ++ + LL +Y LV DSL + P V W S+I
Sbjct: 295 TSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINP-NQVTWTSVIVG 353
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG +L F +M+ S + P+ SVL++C+ L G+ +HA +++ G+D+D
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDID 413
Query: 141 LYTNNALMNMYAQ 153
Y AL++ Y +
Sbjct: 414 KYVGAALIDFYGK 426
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I +NG E++ + RM+ G+ PD F SV K+ + L G+ H
Sbjct: 142 VAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQ 201
Query: 132 IIRLGVDL-DLYTNNALMNMYAQSQNM 157
+ LGV + +++ +AL++MYA+ M
Sbjct: 202 SVVLGVGVSNVFVGSALVDMYAKFGKM 228
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ +Y F + D+ + D + V + ++I + +G ESL F M
Sbjct: 213 FVGSALVDMYAKFGKMRDARLVSDQV-VGKDVVLFTALIVGYSHHGEDGESLQVFRNMTK 271
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
G+ + SVL C L D G +H I++ G++ + + +L+ MY
Sbjct: 272 KGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMY 323
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++ + T++ P + W +++R + V +L +V MI G+ P+ FP +LKSC
Sbjct: 19 AISVFATIQEPNQLI-WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDR----------- 164
F G+ +H +++LG + DLY + +L++MYAQ+ + D H ++DR
Sbjct: 78 KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137
Query: 165 -FQGFGFNGGREASVHEVLDKIPERN 189
G+ + G S E+ D+IP ++
Sbjct: 138 LITGYA-SSGNIRSAQEMFDEIPVKD 162
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD +VL +C G VH+
Sbjct: 164 VSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSW 223
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G +L NAL+++Y++
Sbjct: 224 IDDHGFGSNLKIVNALIDLYSK 245
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ +L ++ +Q+H+ I ++ +++ L+ +Y+ V + L + L
Sbjct: 200 TMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGL 259
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I T L E+L F M+ SG P+ S+L +C L G
Sbjct: 260 SC-KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG 318
Query: 126 ESVHACIIRLGVDLDLYTN-----NALMNMYAQSQNMD 158
+H I + D+ TN +L++MYA+ +++
Sbjct: 319 RWIHVYIDKKLKDV---TNAPSLRTSLIDMYAKCGDIE 353
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ C QN E+L F +MI +G+ PD +V+ +C L G+ +H
Sbjct: 139 ISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLY 198
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G DLD+Y ++L++MYA+ ++D
Sbjct: 199 VMQNGFDLDVYIGSSLIDMYAKCGSLD 225
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M+ S + P F S++K+C L + +FGE VH + R G++ ++ AL++ Y+
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTV-- 58
Query: 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
GR +V D++PER+
Sbjct: 59 ----------------GRIIESKKVFDEMPERD 75
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIY--NNF----NLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q+HA I S + L+ +Y N F V D LC+ D+ V+W ++
Sbjct: 209 EQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDS-------VSWVAV 261
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I +QNG E++ F M SG+ P VF SVL +C + F GE +HA + + G
Sbjct: 262 ISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGF 321
Query: 138 DLDLYTNNALMNMYAQSQNM 157
L+ Y NAL+ +Y++ N
Sbjct: 322 FLETYVCNALVTLYSRLGNF 341
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL SIK+ S+ +QLH+ K + LL +Y + + + T
Sbjct: 393 TVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATT 452
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+T V W ++ Q L +S F +M G+ P+ +PS+L++CT G
Sbjct: 453 QTE-NVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLG 511
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
E +H+ I+ G + ++Y + L++MYA+ +D+
Sbjct: 512 EQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDI 545
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S +Q+H+Q KT + ++ S L+ +Y + + +L L
Sbjct: 494 TYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRL 553
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I TQ+ L E+L F M+ G+ D+ F S + +C + G
Sbjct: 554 NEE-DVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQG 612
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA G DL NAL+++YA+
Sbjct: 613 QQIHAQSYISGYSEDLSIGNALVSLYAR 640
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
I+ SQ +Q+HAQ + + + + L+ +Y + ++ + + ++W +
Sbjct: 606 IQALSQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAK-DSISWNA 664
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ Q+G E+L F +M + + F S + + + + + G+ +HA I++ G
Sbjct: 665 LMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTG 724
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D ++ +NAL+ +YA+ +D
Sbjct: 725 FDSEIEVSNALITLYAKCGCID 746
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLHA +FK ++ + L+ +Y+ + + +K V++ S+I +
Sbjct: 309 GEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCK-DEVSYNSLISGLS 367
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G +L F +M + PD S+L +C + GE +H+ I+ G+ LD+
Sbjct: 368 QQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDII 427
Query: 143 TNNALMNMYAQSQNM 157
+L+++Y + ++
Sbjct: 428 IEGSLLDLYVKCSDI 442
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRC 80
Q KQ+HA I KT + + + L+ +Y + + + + P ++W ++I
Sbjct: 712 QGKQIHAMIMKTGFDSEIEVSNALITLYAKCGCIDGAK--REFFEIPEKNEISWNAMITG 769
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+Q+G +E++ F +M G P+H F V+ +C+
Sbjct: 770 YSQHGCGIEAVNLFQKMKQVGAKPNHVTFVGVISACS 806
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
K+LH++I K L +L+ Y ++ + + D + + + + W ++
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSL-MTWNKVLSGLVA 165
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGVDLDLY 142
N L F +M+ V P+ SVL++ + V F + E +HA II G+
Sbjct: 166 NKTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSI 225
Query: 143 TNNALMNMYAQ 153
N L+++YA+
Sbjct: 226 ACNPLIDLYAK 236
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 32/191 (16%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD- 63
+TLI+LL K+ + K++HA +F TL + I L +++ + D LD
Sbjct: 14 QTLISLLDG---CKSMFELKRIHALLF-TLGISQDETIKSKLLLFSALSPARD----LDY 65
Query: 64 ----TLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L P P W ++IR + S+T F++M+ +GV PD+ +P ++K+ +
Sbjct: 66 SYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSK 125
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L++ G +VH I++ G ++D + N+L++MYA +++ AS
Sbjct: 126 LLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDI------------------ASA 167
Query: 179 HEVLDKIPERN 189
+V D++P +N
Sbjct: 168 RKVFDEMPRKN 178
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + TL++ L + + +H I + P + L + L+ +Y +H++L
Sbjct: 242 MANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALT 301
Query: 61 LLDTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ A + W +II +GL+ E++ F M G+ PD + +L C
Sbjct: 302 VFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCA 359
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLKTPAPPVAWK 75
KT + KQ+H+ + T + SRL+ N L + + + D + + W
Sbjct: 16 KTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYI-WN 74
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
S+I+ G +L + M G PDH FP VLK C+++ +G+SVH I++
Sbjct: 75 SMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKT 134
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G +LD+YT++ L+NMY +++
Sbjct: 135 GFELDVYTSSCLLNMYVSCGDLN 157
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S+I +Q G E+L FV M +G P+ F SV+ +CT + G S+HA
Sbjct: 280 VVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHAR 339
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+R + ALM+MYA++ + D
Sbjct: 340 ALRASFHEFVAIGTALMDMYAKAGDAD 366
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSL 59
++ +TLI LL+N ++ S+ KQ+ A + SRLL +++ + S
Sbjct: 10 STNQTLIALLEN---CRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSY 66
Query: 60 CLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ L+ P+P ++ W SIIR ++ S++ FV+M+ GV PDH +P + K+
Sbjct: 67 RIF--LQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVAR 124
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------ 164
L + R +VH I + G+ D + N+L++MY ++ ++D
Sbjct: 125 LSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAM 184
Query: 165 FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNK 203
G+ G + S +V + +P+R+ V SS + GC K
Sbjct: 185 LDGYAKCGDLD-SARQVFESMPDRD-VVSWSSMIDGCVK 221
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C + G +L F RM G + SVL +C L G ++H
Sbjct: 210 VSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQY 269
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ + L +LM+MYA+
Sbjct: 270 MVDNTMRFTLVLRTSLMDMYAK 291
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
TL ++L + + K+LH I K S ++ S ++ +Y +L H + +
Sbjct: 353 TLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGI 412
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V W S+I C+QNG E++ F +M +G D + L +C L
Sbjct: 413 ----SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 468
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+G+ +HA ++R DL+ +AL++MY++ N+D+
Sbjct: 469 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDL 505
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L+++L+ SQ +Q HAQ+ + L ++LL +Y D+ + L+
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
W +IR T G +L + +M+G G PD FP V+K+C L G
Sbjct: 109 LWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQS 154
VH I +G +LD++ ++L+ Y+++
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++HA + + + F S L+ +Y+ + + + DT++ V+W SII
Sbjct: 471 GKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSIIAAYG 529
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L +SL F M+G G+ PDH F +++ +C
Sbjct: 530 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISAC 563
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ Y+ +HD+ L D + + V W ++ +NG + F+ M
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN--ALMNMYAQSQNM 157
+ P+ F VL C + FG +H ++ G+++D N AL+++Y + +++
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDV 301
Query: 158 DM--HIYDR 164
+M I+D+
Sbjct: 302 EMARKIFDQ 310
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+TP V ++I NG+ +L F ++ + + SVL +C L G
Sbjct: 311 RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLG 370
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H I++ G Y +A+M+MYA+ +D+
Sbjct: 371 KELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDL 404
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTLKTPAPPVAWKSIIRCC 81
KQ+H Q+ K F+ S L+ +Y N + D C + K V W +++ C
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDI--VTWTAMVSGC 395
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L ++L+ F +G+G+ PD SV+ +C L R GE + + G D
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++MYA+S ++D RFQ
Sbjct: 456 VMGNSCVHMYARSGDVDAATR-RFQ 479
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +H + K + FL+S ++ +Y + ++ L +++ P + I C
Sbjct: 231 AEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCR 290
Query: 83 QNGLL-----VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
++ E+LT + + G+ P F SVL++C L FG+ +H +I+
Sbjct: 291 TETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTF 350
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSG 197
D + +AL+++Y S M+ D F+ F R + H++ V ++
Sbjct: 351 QEDDFIGSALIDLYFNSGCME----DGFRCF-----RSSPKHDI----------VTWTAM 391
Query: 198 LAGC--NKFEKRVVSAGHDA 215
++GC N+ ++ +S H++
Sbjct: 392 VSGCVQNELHEKALSLFHES 411
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +I ++ GL SL R +GV D + + L +C+ R G +VHA
Sbjct: 75 VSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHAL 134
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I G+ ++ +N+L++MY++ M
Sbjct: 135 AILDGLSSGVFVSNSLVSMYSKCGEM 160
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+L+ V + S +Q+HA+I K + ++ ++L+ Y + + + L L+
Sbjct: 71 ILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRA 130
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+W +II + GL+ +L FV M+ +G++PD+ V P+V K+C L RFG
Sbjct: 131 R-NVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRG 189
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH + + G+ ++ ++L +MY + +D +V D+IP+
Sbjct: 190 VHGYVAKAGLHDCVFVASSLADMYGKCGLLD------------------DARKVFDEIPD 231
Query: 188 R 188
R
Sbjct: 232 R 232
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + +H + K + F+ S L +Y L+ D+ + D +
Sbjct: 173 NVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDR 232
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M G+ P + L + + G+
Sbjct: 233 TV-VAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQS 291
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
HA I G++LD +++N Y + ++ I+DR
Sbjct: 292 HAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRM 330
>gi|449434032|ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
gi|449526397|ref|XP_004170200.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
Length = 486
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+KT LL+ + K + K++HAQ+ + +L ++LL +Y + + L +
Sbjct: 88 SKTYCLLLQECIFRKEYMKGKRIHAQMVVVGYVPNEYLNTKLLILYAKSGDLETAYVLHE 147
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
L + V+W S+I Q GL L +++M SG+ PD F SVL++C L
Sbjct: 148 HLLEKSL-VSWNSLIAGYVQKGLAEVGLEFYLKMRQSGLMPDQYTFASVLRACASLASLE 206
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ H +I+ + ++ ++AL++MY + ++
Sbjct: 207 HGKRAHGVLIKCQIGDNVVVSSALVDMYFKCSSLS 241
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++ ++ ++ KQ H QI + + F+ S L+ +Y +LV D+ D +
Sbjct: 142 TMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEV 201
Query: 66 K------------------------------TPAPPVAWKSIIRCCTQNGLLVESLTCFV 95
T + W +++ TQNGL E+L F
Sbjct: 202 DSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFR 261
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
RM G+ D F S+L +C L G+ +HA IIR D +++ +AL++MY++ +
Sbjct: 262 RMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCR 321
Query: 156 NMDMH--IYDRFQ------------GFGFNGGREASV 178
++ + ++ R G+G NG E +V
Sbjct: 322 SIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAV 358
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ Q KQ+HA I +T ++ F+ S L+ +Y+ S+ L +T+
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCR----SIKLAETV 329
Query: 66 ---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
T ++W ++I QNG E++ F M G+ PD SV+ SC L
Sbjct: 330 FRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASL 389
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H + G+ + +NAL+ +Y + +++
Sbjct: 390 EEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y + D+ L D + + V+W +++ Q G E++ F +M+ GV P
Sbjct: 414 LVTLYGKCGSIEDAHRLFDEM-SFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKP 472
Query: 105 DHNVFPSVLKSCT 117
D F VL +C+
Sbjct: 473 DGVTFIGVLSACS 485
>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 682
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA + L+ +L+ Y+ FNL H ++ P+ W +I +N
Sbjct: 65 QIHAHCVSSGVEYHSALVPKLVTFYSAFNL-HREAQSINENSDILHPLPWNVLIASYAKN 123
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L E + + RM+ G+ PD +PSVLK+C +D G VH I LY
Sbjct: 124 ELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVC 183
Query: 145 NALMNMYAQSQNMDM 159
NAL++MY + N+ +
Sbjct: 184 NALISMYKRFGNVGI 198
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDTLKTPAPPVAWKSIIRCC 81
KQ+H Q+ K F+ S L+ +Y N + D C + K V W +++ C
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDI--VTWTAMVSGC 395
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN L ++L+ F +G+G+ PD SV+ +C L R GE + + G D
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++MYA+S ++D RFQ
Sbjct: 456 VMGNSCVHMYARSGDVDAATR-RFQ 479
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +H + K + FL+S ++ +Y + ++ L +++ P + I C
Sbjct: 231 AEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCR 290
Query: 83 QNGLL-----VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
++ E+LT + + G+ P F SVL++C L FG+ +H +I+
Sbjct: 291 TETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTF 350
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSG 197
D + +AL+++Y S M+ D F+ F R + H++ V ++
Sbjct: 351 QEDDFIGSALIDLYFNSGCME----DGFRCF-----RSSPKHDI----------VTWTAM 391
Query: 198 LAGC--NKFEKRVVSAGHDA 215
++GC N+ ++ +S H++
Sbjct: 392 VSGCVQNELHEKALSLFHES 411
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +I ++ GL SL R +GV D + + L +C+ R G +VHA
Sbjct: 75 VSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHAL 134
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I G+ ++ +N+L++MY++ M
Sbjct: 135 AILDGLSSGVFVSNSLVSMYSKCGEM 160
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL S +KQ+H I K+ + S L+ +Y+ +LV+D+ + + L
Sbjct: 425 TFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNML 484
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I QN E++ F +++ SG+ P+ F +++ + L G
Sbjct: 485 HYK-DMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHG 543
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ HA II+ GVD D + +NAL++MYA+
Sbjct: 544 QQFHAWIIKAGVDNDPHVSNALIDMYAK 571
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H +++ +I+ L+ +Y + + + L D ++ V+W ++I
Sbjct: 240 GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYR-NLVSWTTMISGYM 298
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++T F M +G PD S+L SC L G +HA +I+ ++ D Y
Sbjct: 299 QNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEY 358
Query: 143 TNNALMNMYAQSQNM 157
NAL++MYA+ +++
Sbjct: 359 VKNALIDMYAKCEHL 373
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ + FL + LL Y+N + D+ L D + V+W S+I TQ+G
Sbjct: 40 IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHR-NLVSWGSVISMYTQHG 98
Query: 86 LLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+++ FV S P+ + SVL++CT GE VH ++L +D ++Y
Sbjct: 99 RDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVG 158
Query: 145 NALMNMYAQSQNMD 158
AL+N+YA+ MD
Sbjct: 159 TALINLYAKLGCMD 172
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L + S+ Q +Q+HA + K ++ + L+ +Y + ++ + D L
Sbjct: 327 SILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAED 386
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+++ ++I ++N L E++ F RM + P F S+L + + + +
Sbjct: 387 -DAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQI 445
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
H II+ G LDLY +AL+++Y++
Sbjct: 446 HGLIIKSGTSLDLYAASALIDVYSK 470
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++L+ K S +Q+H K + ++ + L+ +Y + +++ + L
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P V W ++I Q G +L F RM GV PD V S + +C+ L G
Sbjct: 183 VRTP-VTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 241
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H R + D N L+++Y +
Sbjct: 242 QIHGYAYRSATETDTSVINVLIDLYCK 268
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 18/199 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ ++ + +Q HA I K N + + L+ +Y + + L ++
Sbjct: 526 TFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFES- 584
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I Q+G E+L F M + V P++ F VL +C
Sbjct: 585 TCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACA-------- 636
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + G++ N++ + Y ++ H FG +G A+ E ++++
Sbjct: 637 ---HAGFVGEGLN----HFNSMKSNYDIEPGIE-HYASVVNLFGRSGKLHAA-KEFIERM 687
Query: 186 PERNGNVELSSGLAGCNKF 204
P + S L+ C+ F
Sbjct: 688 PIKPAAAVWRSLLSACHLF 706
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T INLL S+ T + Q+HA I K + + + LL Y + + + +
Sbjct: 308 TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM 367
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I N LL +++ M+ G D F +VL +C + G
Sbjct: 368 SERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECG 427
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHAC IR ++ D+ +AL++MY++ +D
Sbjct: 428 MEVHACAIRACLESDVVIGSALVDMYSKCGRID 460
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
S+ + + +Q+H +T +++ + L+ +Y + + + L V+W
Sbjct: 114 SMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFG-LMVDKDSVSW 172
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I QN +++ + M +G+ P + S L SC L G+ H I+
Sbjct: 173 NSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK 232
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG+D+D+ +N L+ +YA++ +
Sbjct: 233 LGLDMDVSVSNTLLALYAETSRL 255
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A H + K + FL + L+ +Y + L D + V W +I T
Sbjct: 19 ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEM-PDRNGVTWACLISGYT 77
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGV-DLD 140
QNG+ ++ MI G P+ F S +++C ++ R G VH IR G+ D
Sbjct: 78 QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137
Query: 141 LYTNNALMNMYAQSQNMD 158
+ N L+NMYA+ ++D
Sbjct: 138 VAVGNGLINMYAKCGDID 155
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLV-ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I +G V E++ F+ M+ +G P+ F ++L + + L + +HA
Sbjct: 271 VSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHA 330
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
I++ V D NAL+ Y +S M+ + E+ ++ ER
Sbjct: 331 LILKYNVKDDNAIENALLACYGKSGEME------------------NCEEIFSRMSERRD 372
Query: 191 NVELSSGLAG 200
V +S ++G
Sbjct: 373 EVSWNSMISG 382
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL LK + + +QLH+Q F+ LEP S ++ + LL +Y V + + D
Sbjct: 130 TLAFALKACSVVPALGEGRQLHSQAFRRGLEP-SPYVQTGLLNLYAKCEEVALARTVFDG 188
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ AW ++I ++ G++ E+L F M + V PD SV+ +C
Sbjct: 189 MVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDL 248
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VHA I R G+ +DL + AL++MYA+
Sbjct: 249 GRWVHAFIDRKGITVDLELSTALIDMYAK 277
>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
Length = 587
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S TL++++ +K + HA + + L++ +L Y V +
Sbjct: 89 MPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARR 148
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + + T V W ++ Q+G + E+LT + +M+ +G+ P+ SV+++C+L
Sbjct: 149 LFEGM-TEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQACSLAP 207
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
D G VH +++G +L++ AL++MY
Sbjct: 208 DIEEGRRVHDIAVKIGCELEMTVATALVDMY 238
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
VAW +I TQNGL ES+ F M+ G +PD VL +C+ R +H
Sbjct: 259 AVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHG 318
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G ++ AL+++Y++ N+
Sbjct: 319 YLVITGFCDKIFVAAALVDLYSKCGNL 345
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 21 SQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ + LHA ++ F+ + L+ +Y + S+ + P V S++
Sbjct: 6 AHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEP-DMVLRTSMVT 64
Query: 80 CCTQNGLLVESLTCFVR-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
QN + E+L F R ++G G P SV+ + L D G++ HA +IR +
Sbjct: 65 GYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFE 124
Query: 139 LDLYTNNALMNMY 151
DL NA++ Y
Sbjct: 125 YDLVLVNAILGFY 137
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C +NG VE+L CFV M SGV D SVL + +L D FG VH
Sbjct: 170 VSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGF 229
Query: 132 IIRLG-VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN- 189
+ G V D+Y +AL++MY++ D + +V +++P RN
Sbjct: 230 YVESGRVIWDVYVGSALVDMYSKCGYCDDAV------------------KVFNEMPTRNL 271
Query: 190 -GNVELSSGLAGCNKFEK 206
L +G CN++++
Sbjct: 272 VSWGALIAGYVQCNRYKE 289
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+L L D L TP + W +IIR + + L + R+ GV PD + FP +LK+ +
Sbjct: 57 TLLLFDRLATPYIFL-WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFS 115
Query: 118 LLVD---FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
L + F+F +A I++ G+D D + N+L++ +A +D
Sbjct: 116 KLRNENPFQF----YAHIVKFGLDFDAFVQNSLVSAFAHCGYVD 155
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
SIK +QLH+ K+ ++ + + +L +Y + ++ C+ D ++ V+W
Sbjct: 389 ASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERR-DAVSW 447
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I QNG E+L F M+ + PD + SVLK+C+ G +H II+
Sbjct: 448 NAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK 507
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
G+ LD + AL++MY + ++ I+DR +
Sbjct: 508 SGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIE 541
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W S++ QNG +S+ F+ M S V D F VLK+C++L D G VH
Sbjct: 141 VSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHG 200
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+R+G D+ T +AL++MYA+ + +D
Sbjct: 201 LIVRMGFYKDVVTGSALLDMYAKCKRLD 228
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK S + + ++H +I K+ F+ L+ +Y ++ ++ + D +
Sbjct: 481 TYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI 540
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II T ++ + F M+ V PD+ + VL +C L G
Sbjct: 541 EQQTM-VSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLG 599
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H II+L + D+Y + L++MY++ NM
Sbjct: 600 KQIHGQIIKLELHSDVYITSTLVDMYSKCGNM 631
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
S LL +Y + DSL + + V W +II C QN + L F M G+
Sbjct: 215 SALLDMYAKCKRLDDSLKIFSEIPVK-NWVCWSAIIAGCVQNDEHILGLELFKEMQKVGI 273
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+++ SV +SC L + G +HA ++ D+ A ++MYA+
Sbjct: 274 GVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAK 324
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRCC 81
KQ+H QI K + ++ S L+ +Y+ + DS + + K P V W ++I
Sbjct: 599 GKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFE--KAPNKDFVTWNAMICGY 656
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
Q+GL E+L F RM V P+H F S+L++C
Sbjct: 657 AQHGLGEEALGYFERMQLENVRPNHATFVSILRACA 692
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ + +Q+H K+ ++ + LL Y L+ D+ + +
Sbjct: 392 TLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEV- 450
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
PA VA+ S+I +Q GL E+L ++RM + PD +F S+ +C L +
Sbjct: 451 -CPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQ 509
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +++ G+ D++ N+L+NMYA+ ++D
Sbjct: 510 GKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSID 543
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL + LK +I +QLH+ + K +EP+S F+ L+ +Y+ L+ D+ + D
Sbjct: 291 TLSSALKACAAIGLVKLGRQLHSALMKMDMEPDS-FVGVGLIDMYSKCGLLQDARMVFD- 348
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L + W SII + G +E+++ F M G+ + ++LKS F
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E VH I+ G D Y N+L++ Y +
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGK 437
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 74 WKSIIRCC--TQN---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+ S+++ C T+N G + + MI +G+ P+ +VL +C L D +G V
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKV 210
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
H +I+LG D D ++ NAL++MYA+S
Sbjct: 211 HGYLIKLGYDSDPFSANALLDMYAKS 236
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+H + K + F + L+ +Y + D+ C+ + + V+W ++I
Sbjct: 509 QGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI-VSWSAMIGGL 567
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
Q+G ++L F +M+ +G+ P+H SVL +C
Sbjct: 568 AQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC 602
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L +L ++ ++ ++H + K + F + LL +Y ++ + +
Sbjct: 190 SLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI 249
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V+W ++I C + +L +M V P S LK+C + + G
Sbjct: 250 PKP-DIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG 308
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ ++++ ++ D + L++MY++
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSK 336
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ + K++H I ++ ++++ L+ +Y + ++ L L
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL 310
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ Q G E++ F RM G+ PD F SVL SC+ + G
Sbjct: 311 PH-RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG 369
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H ++ G +LD+Y +AL++MYA+ +MD
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMD 402
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
LL+ +++ Q +++HA I K+ ++PN R+L + LL +Y + D+ + D+++
Sbjct: 52 GLLQECARLRSLEQGREVHAAILKSGIQPN-RYLENTLLSMYAKCGSLTDARRVFDSIRD 110
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V+W ++I +E+ C+ M +G PD F S+L + T + G+
Sbjct: 111 -RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
VH I+ G++L+ +L+ MYA+ ++ I+DR
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+L+N NP ++ +++H +I + LEP + + L+ +Y + + +
Sbjct: 153 SLLNAFTNPELLQL---GQKVHMEIVEAGLELEPR---VGTSLVGMYAKCGDISKARVIF 206
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L V W +I Q G + +L M + V P+ F S+L+ CT
Sbjct: 207 DRLPEKNV-VTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH II+ G +L+ N+L+ MY + ++
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLE 301
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + S + K++H Q+ +L S L+ +Y + D+ + + +
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM 411
Query: 66 KTPAPPVAWKSIIR-CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ VAW +II CC Q+G E+L F +M G+ PD F SVL +CT
Sbjct: 412 -SERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 83 QNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G L E+L MI G+ VY D VF +L+ C L G VHA I++ G+ +
Sbjct: 24 KTGRLKEALGIMNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQPN 81
Query: 141 LYTNNALMNMYAQ 153
Y N L++MYA+
Sbjct: 82 RYLENTLLSMYAK 94
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ S+++ +++H + L + +L +Y + ++ + D++
Sbjct: 100 TYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM 159
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I ++ G ++T +V+M+ SG PDH F S++KSC+ L DF+
Sbjct: 160 PLKNV-VSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+HA +++ DL NAL++MY + M
Sbjct: 219 RQLHAHVLKSEFGADLIAQNALISMYTKFSQM 250
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ I K + + LL +Y+ + ++D+L + + + A V+W +++ C Q
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
E L M S + PDH +VL S + + G +H I++ G++LD+ +
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS 542
Query: 145 NALMNMYAQSQNMD 158
NAL+NMY + +++
Sbjct: 543 NALINMYTKCGSLE 556
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+QLHA + K+ + L+ +Y F+ + D++ + + ++W S+I +
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI-IIKDLISWGSMIAGFS 276
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F M+ VY P+ VF S +C+ L++ G +H I+ G+ DL
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336
Query: 142 YTNNALMNMYAQ 153
+ +L +MYA+
Sbjct: 337 FAGCSLCDMYAK 348
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II ES + F +M +G+ P+ S+L +C+ V G VH+
Sbjct: 368 VAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSY 427
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+++G +LD+ N+L++MY++ N++
Sbjct: 428 IVKMGFNLDIPVCNSLLSMYSKCSNLN 454
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 18 KTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
KT Q+HA + K LE +S FL+++ + N+ + S + D + +P+ + W S
Sbjct: 40 KTHIDLHQVHAHLIQKGLEQDS-FLVTQFISASNSVAHISYSTSVFDRVLSPSTFL-WNS 97
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ V+ ++ +VRM PD FPS+LK C G ++H I+R G
Sbjct: 98 LVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCG 157
Query: 137 VDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG----------FGFNG-GREASVHEVLD 183
VD D+Y +L+N+Y + +D ++D G++ G + D
Sbjct: 158 VDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFD 217
Query: 184 KIPERN 189
+PERN
Sbjct: 218 LMPERN 223
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW ++I TQNG E++ F+ M V PD V S++ +C+ L + + V +
Sbjct: 287 IAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSY 346
Query: 132 IIRLGVDL-DLYTNNALMNMYAQSQNMDMHIY 162
R VDL + AL++M A+ NM+ +Y
Sbjct: 347 ATRCSVDLRGAHVTAALIDMNAKCGNMERAMY 378
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + K + F+ + L+ +Y F S L + + +P VAW ++I C
Sbjct: 151 GKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEIPSP-ELVAWNTVIGCYV 209
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E+L F RM+ + PD +L +C+ L + G +H+CI G+ +
Sbjct: 210 DCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDIGRWIHSCISNTGLGRFVE 269
Query: 143 TNNALMNMYAQSQNMDMHIYDRF 165
NN++++MYA+ ++ Y+ F
Sbjct: 270 INNSIIDMYAKCGALE-EAYEAF 291
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 42/86 (48%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++IR ++ + + RM G+ D+ F ++K C L G+ +H ++
Sbjct: 100 WNTMIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSVLLGKQMHCSVL 159
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G + ++ N L++MY ++ ++
Sbjct: 160 KYGFESHVFVRNTLIHMYGIFKDFEI 185
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I+ QN L+E+L+ F M+ G+ P++ F S+L C L +G +HA ++
Sbjct: 301 WSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAML 360
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R D D++ +AL+ MY + N+D
Sbjct: 361 RCSFDTDVFAVSALITMYIKCGNLD 385
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 23/220 (10%)
Query: 11 LKNP--VSIKTKSQAKQL---HAQIFKTLEPNSRFLISRLLF--IYNNFNLVHDSLCLLD 63
LKNP V ++ S A+ L HA + +T F SRL+ I + NL+H ++ +
Sbjct: 16 LKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVAS 75
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++ P + + ++IR C+ + S +++ + G+ PD+ P ++K+C L +
Sbjct: 76 QIQNPNLFI-YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAP 134
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGF----------GFN 171
G H I+ G + D Y N+L++MYA +++ ++ R F G++
Sbjct: 135 MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYH 194
Query: 172 G-GREASVHEVLDKIPERN--GNVELSSGLAGCNKFEKRV 208
G S E+ D++PERN + SG A N FEK V
Sbjct: 195 RCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAV 234
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I +N +++ F + GV + V V+ SC L GE H
Sbjct: 215 VTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEY 274
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
++R + L+L A+++MYA+ N++
Sbjct: 275 VMRNKLSLNLILGTAVVDMYARCGNVE 301
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 18/100 (18%)
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
SL + +M+ +G PDH FP VLK+C+ + D G+ VH+CI++ G + ++Y L+N
Sbjct: 91 SLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLN 150
Query: 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
MY + +NM+ S +V DKIP+ N
Sbjct: 151 MYVECKNME------------------SGLKVFDKIPKWN 172
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +I Q E+L F M+ +G PD F SVL C GE+VHA
Sbjct: 282 VAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAY 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+++ + D+ AL++MYA++
Sbjct: 342 LLKSNMAKDIALATALLDMYAKN 364
>gi|302802776|ref|XP_002983142.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
gi|300149295|gb|EFJ15951.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
Length = 544
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T + T +L+ K Q K++H+ I + + R L + L+ +Y + D+ +
Sbjct: 5 TDSATYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRM 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + + W S+I ++ G +L F RM G V PD+ F +VL C +
Sbjct: 65 FDEM-VSRDAILWTSMISAYSERGHYKTALKLFQRMQGESVKPDNVTFVTVLNCCGKMSA 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ G+ +H+ + G + DL AL+NMY + ++ +++ QG
Sbjct: 124 LQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEIQG 171
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L + + K +H+Q+ N + + LL +Y + D+ + + +
Sbjct: 110 TFVTVLNCCGKMSALQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEI 169
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + W +++ Q+ E+L + +M + P + F +V+ +C G
Sbjct: 170 QGK-DIITWNAMLSVYVQHSAYEEALELYRKM---ELTPSVSTFVTVINACAGATALEDG 225
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHA + G++ + ++AL+NMY + +++
Sbjct: 226 RQVHAVVTARGLETEDAVSSALLNMYGKCGSLE 258
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T + ++ +Q+HA + + S LL +Y + D+ +
Sbjct: 205 SVSTFVTVINACAGATALEDGRQVHAVVTARGLETEDAVSSALLNMYGKCGSLEDAAKVF 264
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ VAW +I TQ E+L F M GV D F + L +C
Sbjct: 265 -WKRREYDDVAWAHMISFYTQWHRSKEALGLFRLMRLEGVRVDKFAFTTTLSACNGAECL 323
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +HA I G + D+ +AL++MY +
Sbjct: 324 AEGRLLHAGIEESGFESDVVVRSALIHMYGR 354
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
TL ++L + + K+LH I K S ++ S ++ +Y +L H + +
Sbjct: 452 TLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGI 511
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V W S+I C+QNG E++ F +M +G D + L +C L
Sbjct: 512 ----SXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 567
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+G+ +HA ++R DL+ +AL++MY++ N+D+
Sbjct: 568 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDL 604
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
QLH + + LE +S + + LL +Y + D+ L D + V W +I
Sbjct: 267 GSQLHGLVVSSGLEMDSP-VANTLLAMYAKCGHLFDARRLFDMMPK-TDLVTWNGMISGY 324
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG + E+ F MI +G+ PD F S L + R G+ +H IIR GV LD+
Sbjct: 325 VQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384
Query: 142 YTNNALMNMYAQSQNMDM--HIYDR 164
+ +AL+++Y + ++++M I+D+
Sbjct: 385 FLKSALIDIYFKCRDVEMAHKIFDQ 409
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L+++L+ S +Q HAQ+ + L ++LL +Y D+ + L+
Sbjct: 49 LVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
W +IR T G +L + +M+G G PD FP V+K+C L G
Sbjct: 109 LWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQS 154
VH I +G +LD++ ++L+ Y+++
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T Q K++H I + FL S L+ IY V + + D +TP V ++I
Sbjct: 364 TLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQ-RTPVDIVVCTAMI 422
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
NG+ +L F ++ + + SVL +C L G+ +H I++ G
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482
Query: 139 LDLYTNNALMNMYAQSQNMDM 159
Y +A+M+MYA+ +D+
Sbjct: 483 GSCYVGSAIMDMYAKCGKLDL 503
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ Y+ +HD+ L D + + V W ++ +NG + F+ M
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ P+ F VL C + FG +H ++ G+++D N L+ MYA+
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCG---- 297
Query: 160 HIYD 163
H++D
Sbjct: 298 HLFD 301
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++HA + + + F S L+ +Y+ + D C + + V+W SII
Sbjct: 570 GKEIHAFMMRGAFRSDLFAESALIDMYSKCGNL-DLACRVFDMMEEKNEVSWNSIIAAYG 628
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L +SL F M+G G+ PDH F +++ +C
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISAC 662
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ S+++ +++H + L + +L +Y + ++ + D++
Sbjct: 100 TYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM 159
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I ++ G ++T +V+M+ SG PDH F S++KSC+ L DF+
Sbjct: 160 PLKNV-VSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+HA +++ DL NAL++MY + M
Sbjct: 219 RQLHAHVLKSEFGADLIAQNALISMYTKFSQM 250
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ I K + + LL +Y+ + ++D+L + + + A V+W +++ C Q
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
E L M S + PDH +VL S + + G +H I++ G++LD+ +
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS 542
Query: 145 NALMNMYAQSQNMD 158
NAL+NMY + +++
Sbjct: 543 NALINMYTKCGSLE 556
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+QLHA + K+ + L+ +Y F+ + D++ + + ++W S+I +
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI-IIKDLISWGSMIAGFS 276
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +E+L F M+ VY P+ VF S +C+ L++ G +H I+ G+ DL
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336
Query: 142 YTNNALMNMYAQ 153
+ +L +MYA+
Sbjct: 337 FAGCSLCDMYAK 348
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II ES + F +M +G+ P+ S+L +C+ V G VH+
Sbjct: 368 VAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSY 427
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+++G +LD+ N+L++MY++ N++
Sbjct: 428 IVKMGFNLDIPVCNSLLSMYSKCSNLN 454
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +Q+HA + K +L +RL+ +Y + D+ +LD + V+W ++I
Sbjct: 59 EGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPE-RNVVSWTAMISGY 117
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q+G E+L F+RM+ +G + +VL SC + + E VH+ +++ + +
Sbjct: 118 SQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHM 177
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ ++L++MY +S N+ +V D +PER+
Sbjct: 178 FVGSSLLDMYGKSGNIQ------------------EARKVFDMLPERD 207
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ Q +Q+H+ + KT + F+ S LL +Y + ++ + D L
Sbjct: 144 TLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDML 203
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F ++ SG+ ++ F ++L S + L +G
Sbjct: 204 PE-RDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYG 262
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VH I+R + + N+L++MY++ + +Y R V D +
Sbjct: 263 KQVHGLILRKELPFFIVLQNSLIDMYSKCGKL---LYSR---------------RVFDNM 304
Query: 186 PERNG 190
P+R+
Sbjct: 305 PQRSA 309
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 5/160 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL++ +S K KQLHA++ + + L ++L+ Y+ N + ++ L D K P
Sbjct: 63 SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFD--KIP 120
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+ W +IR NG +++ + +M+ G+ PD+ P VLK+C+ L G
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
+H +IR G + D++ AL++MYA+ + H++D+
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI 220
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK ++ T + + +H ++ ++ F+ + L+ +Y V D+ + D +
Sbjct: 161 TLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI 220
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S++ QNG ESL+ M GV P +V+ S + G
Sbjct: 221 -VDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHG 279
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H R G + AL++MYA+
Sbjct: 280 REIHGFGWRHGFQYNDKVKTALIDMYAK 307
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH I K + F+ S L+ +Y+ + + ++L + D + T V W SII Q
Sbjct: 83 RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVT-GDLVVWSSIIAGFAQ 141
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L F RM +G SVL++CT L G VH +++ D DL
Sbjct: 142 NSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLIL 199
Query: 144 NNALMNMYAQSQNMD 158
NNAL++MY + +++
Sbjct: 200 NNALLDMYCKCGSLE 214
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMI 98
FLI+ L+ +Y F L+HD+ + D K P V+W ++I + L ++L V M+
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFD--KMPDRNVVSWTTMISAYSAAKLNDKALEFLVLML 58
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GV P+ + SVL++C L + R +H CII++G+D D++ +AL+++Y++ ++
Sbjct: 59 REGVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELE 115
Query: 159 --MHIYD 163
+ ++D
Sbjct: 116 NALRVFD 122
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L S+++ + K++H + K + R L + L+ +Y + + +
Sbjct: 78 TFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEM 137
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V W II +NG E+ F M +G+ PD + VL C+ L G
Sbjct: 138 K-DRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSLEQ---G 193
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H+ II G++LDL+ AL+NMY+ ++++ D Q + +K+
Sbjct: 194 RILHSYIIEAGLELDLWVGTALLNMYSNCRSLE----DALQ--------------IFEKL 235
Query: 186 PERN 189
PERN
Sbjct: 236 PERN 239
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
Q + LH+ I + ++ + LL +Y+N + D+L + + L V W S+I
Sbjct: 191 EQGRILHSYIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLP-ERNLVTWTSVIAA 249
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q G+ ++ + +M+ G+ D + +VL C + D G+ VH +++ G+ D
Sbjct: 250 YAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATD 309
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ L++MYA+ GR H++L+ + ER+
Sbjct: 310 QILDSTLIDMYAKC------------------GRTDIAHQLLEIMDERD 340
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+ KQ+H + K+ + L S L+ +Y ++ H L ++D V++ ++
Sbjct: 292 EKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMD----ERDVVSYTAL 347
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I + G E+L F M GV P+ F VLK+CT L G +HA II+ G+
Sbjct: 348 IVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGLGSLVEGRRIHASIIKAGL 407
Query: 138 DLDLYTNNALMNMYAQ 153
D AL +MYA+
Sbjct: 408 AQDSSLKYALADMYAK 423
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97
S F+++ LL +Y + D+ + D ++ W ++ + G L E+ + +M
Sbjct: 9 STFVLNALLNMYMKCGSITDARQVFDNMR-ERDMFTWTMMLTGYARLGHLEEAYRVYEQM 67
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ + D F ++L C L G+ VH +I+ G+ D N L++MYA+ N+
Sbjct: 68 LEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNI 127
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL ++ + KQLH+ + K + LL +Y + ++L + D+
Sbjct: 246 TIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDS- 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ Q L +S F RM+ +GV P+ +P +L++CT + G
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
E +H+ I+ G D+Y + L++MY++ +D
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLD 397
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + IK Q Q+HA+++ + + + L+++Y + ++ + ++
Sbjct: 449 LASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIE 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ W +I Q+GL E+L F++M +G + F S + + L D + G+
Sbjct: 509 HK-EGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGK 567
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+HA +I+ G + +NAL+++Y + +++ D F+
Sbjct: 568 QIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFE 607
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ + ++ Q KQ+HA++ KT + + + L+ +Y + D+ +D
Sbjct: 549 TFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAK--MDFF 606
Query: 66 K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ T V+W +II CC+Q+G +E+L F +M G+ P F VL +C+
Sbjct: 607 EMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACS 659
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 10 LLKNPVSIKTKSQAKQL----HAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
+L + +S TK++ QL H Q++K + F+ + L+ +Y +F L C
Sbjct: 145 VLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFC-- 202
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L + V + ++I Q G +L F M SG+ PD S+L +C+ + D
Sbjct: 203 DMLYCDS--VTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD 163
R G+ +H+ +++ G+ LD +L+++Y +S +++ + I+D
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ K + ++ L+ +Y+ + + + +LD ++ V+W S+I
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ E+L F M G++PD+ S + +C + G +HA + G D+
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS 482
Query: 143 TNNALMNMYAQ 153
N L+ +YA+
Sbjct: 483 IWNGLVYLYAR 493
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA+ R + + L+ +Y V + + + L V+W +++ QN
Sbjct: 63 EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSV-RDNVSWVAVLSGYAQN 121
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E++ + M SGV P V S+L +CT F+ G +H + + G + +
Sbjct: 122 GLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVG 181
Query: 145 NALMNMYAQSQNMDM 159
NAL+++Y + ++ +
Sbjct: 182 NALISLYLRCRSFRL 196
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ C QNG +S+ F +M + D+ F VLK+CT + D+ G VH
Sbjct: 136 VSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCL 195
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRF 165
I++G D D+ T AL++MY+ + +D H ++ F
Sbjct: 196 AIQMGFDSDVVTGTALVDMYSTCKKLD-HAFNIF 228
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+IK + QLH K + + + +L +Y + ++ + D ++ V+W
Sbjct: 384 AIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWN 442
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+II QN + E+L FV M+ S + PD F SV+K+C +G VH +I+
Sbjct: 443 AIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS 502
Query: 136 GVDLDLYTNNALMNMYAQ 153
G+ LD + +A+++MY +
Sbjct: 503 GMGLDWFVGSAIIDMYCK 520
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K K + ++H ++ K+ F+ S ++ +Y ++ ++ + + L
Sbjct: 475 TFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERL 534
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W SII + +L+ F RM+ GV PD+ + +VL C L G
Sbjct: 535 EERTT-VSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELG 593
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H I++L + D+Y + +++MY++ NM
Sbjct: 594 KQIHGQILKLQLHSDVYIASTIVDMYSKCGNM 625
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K + ++ S ++ +Y+ + DS + +
Sbjct: 576 TYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFE-- 633
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V W ++I +GL +++ F M V P+H +F SVL++C
Sbjct: 634 KAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACA 686
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I +N E L + M+ G+ F S +SC L F G +HA
Sbjct: 237 VCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAY 296
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D A ++MYA+ M
Sbjct: 297 ALKTNFGYDNIVGTATLDMYAKCDRM 322
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 1/152 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S T + ++ + QLHA KT + + L +Y + + D+ +
Sbjct: 269 VSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKV 328
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+T P I+ Q+ +L E+L F + S + D L +C+ +
Sbjct: 329 FNTFPNPTRQSHNALIVGYARQDQVL-EALEIFRSLQKSYLDFDEISLSGALTACSAIKG 387
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ G +H ++ G+D ++ N +++MYA+
Sbjct: 388 YLEGIQLHGLAVKCGLDFNICVANTILDMYAK 419
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 32/191 (16%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD- 63
+TLI+LL K+ + K++HA +F TL + I L +++ + D LD
Sbjct: 14 QTLISLLDG---CKSMFELKRIHALLF-TLGISQDETIKSKLLLFSALSPARD----LDY 65
Query: 64 ----TLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L P P W ++IR + S+T F++M+ +GV PD+ +P ++K+ +
Sbjct: 66 SYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSK 125
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L++ G +VH I++ G ++D + N+L++MYA +++ AS
Sbjct: 126 LLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDI------------------ASA 167
Query: 179 HEVLDKIPERN 189
+V D++P +N
Sbjct: 168 RKVFDEMPRKN 178
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + TL++ L + + +H I + P + L + L+ +Y +H++L
Sbjct: 242 MANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALT 301
Query: 61 LLDTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ A + W +II +GL+ E++ F M G+ PD + +L C
Sbjct: 302 VFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCA 359
>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
Length = 1121
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLVHDSLCL 61
LLK + +Q K+LHAQI ++ E +RFL + L+ +Y ++
Sbjct: 127 RLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRA 186
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D++ +W SI+ GL ++L F +MI +GV PD VF + L C +L
Sbjct: 187 FDSI-AHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKR 245
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G +H I +D DL NAL++MY + +D+
Sbjct: 246 LEDGAGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDL 283
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLV 55
+ ++ LLK + +Q K+LHAQI ++ E +RFL + L+ +Y
Sbjct: 13 ACRSYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRT 72
Query: 56 HDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
++ D++ +W SI+ GL ++L F +MI +GV PD V+ +LK
Sbjct: 73 DEAQRAFDSI-AHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVYARLLKE 131
Query: 116 CTLLVDFRFGESVHACIIRLGVDLD-------LYTNNALMNMYAQSQNMD 158
C L D G+ +HA I G+ LD + N L+ MY + D
Sbjct: 132 CGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTD 181
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE--SLTCFVRMIGSGV 102
L+ +++ F + + + D + P VA + + G + +LT F RM+ G+
Sbjct: 678 LIEMFSEFRSLSQARAIFD--RNPEKSVALHTTMLAAYVKGERGKEAALTLFARMLLEGL 735
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--H 160
P + + +C L D + VH LG++ + N L++MY ++ ++D +
Sbjct: 736 EPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDTARY 795
Query: 161 IYDR 164
I+DR
Sbjct: 796 IFDR 799
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+W S I + +G E + +M G G + F + L SCT + G +H
Sbjct: 500 ASWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEK 559
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQGF 168
I++ G + D +A++NMY + +D I+ R + F
Sbjct: 560 IVQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTF 598
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I G E+L + GV P+ F S L +C+ L D G ++H I
Sbjct: 404 WNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQD---GRALHLLIH 460
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
G D ++ NAL+ MY +
Sbjct: 461 ESGFDQEVSVANALVTMYGK 480
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---NFNLVHD 57
+++ L++LLK+ + + ++HAQI + N F + LL + + NL +
Sbjct: 27 LSTKHQLLSLLKH---CSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSY- 82
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
LL + + W IIR + + E+++ F M GV P++ FP +LK+C
Sbjct: 83 GCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACA 142
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
L + G+ HA I+ G+DLD+Y N L+N Y + M
Sbjct: 143 TLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRM 182
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK ++ T + KQ HA K ++ + L+ Y + + + + D + T
Sbjct: 137 LLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEM-TER 195
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I C +N E++ F++M G PD +L +C L + G VH
Sbjct: 196 TLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVH 255
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ ++ G+ L++ A ++MYA+S ++
Sbjct: 256 SQVVGRGMVLNVQLGTAFVDMYAKSGDV 283
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 19/117 (16%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
W ++IR + G + + + + M SG V PD + +P ++K+ T + D R GE++H+ +
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
IR G +Y N+L+++YA N G AS ++V DK+PE++
Sbjct: 148 IRSGFGSLIYVQNSLLHLYA------------------NCGDVASAYKVFDKMPEKD 186
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMI 98
++ + LL +Y N V + + D K P VAW S+I +NG E+L + M
Sbjct: 157 YVQNSLLHLYANCGDVASAYKVFD--KMPEKDLVAWNSVINGFAENGKPEEALALYTEMN 214
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ PD S+L +C + G+ VH +I++G+ +L+++N L+++YA+
Sbjct: 215 SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYAR 269
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T + LL+N + +AK++HAQ+ + FL + L+ +Y V D+ +
Sbjct: 25 TERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQV 84
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ ++W S+I C Q G ++ F M +G P+ + S+L +C +
Sbjct: 85 FKEMPR-RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H+ II+ G D N+L++MY +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK 175
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++++ KNP +++ KQ+H +I ++ L + L+ +Y + D+ + +L
Sbjct: 537 SVLSGCKNPEALEL---GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL 593
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++I C G ++++ F +M G P + F S+LK CT G
Sbjct: 594 QH-RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEG 652
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ V A I+ G +LD NAL++ Y++S +M EV DK+
Sbjct: 653 KKVIAYILNSGYELDTGVGNALISAYSKSGSM------------------TDAREVFDKM 694
Query: 186 PERN 189
P R+
Sbjct: 695 PSRD 698
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL + + K +H I ++ ++ L + L+ +Y + ++ + +
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W S+I Q+G + F M + PD+ F SVL C G
Sbjct: 493 QA-RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG 551
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +H I G+ LD+ NAL+NMY
Sbjct: 552 KQIHGRITESGLQLDVNLGNALINMY 577
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W II QNGL ++ +M V P+ F S+L +C+ G+ VHA
Sbjct: 700 VSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAE 759
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I++ + D+ AL++MYA+ G + EV D I E+N
Sbjct: 760 IVKRKLQGDVRVGAALISMYAKC------------------GSQGEAQEVFDNIIEKN 799
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II + E++ + +M GV P F +L +C + G+ +H
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
I+R G+ + + NALMNMY + ++ M + F+G
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSL-MEAQNVFEG 491
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + ++I Q+G VE+ + RM GV + + S+L +C+ G+ +H+
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G D+ NAL++MYA+
Sbjct: 356 ISEDGHSSDVQIGNALISMYAR 377
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ ++LL S + K++HA+I K + + L+ +Y ++ + D +
Sbjct: 736 SFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI 795
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V W ++I Q+GL ++L F M G+ PD + F S+L +C
Sbjct: 796 -IEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSAC 845
>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
Length = 691
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 18/201 (8%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
K ++ +++ +K Q K H+ + KT ++ ++ L+ +Y +F + D+ L D
Sbjct: 4 KHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDE 63
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFR 123
+ V W +++ T NG E++ + RM+ S P+ ++ VLK+C L+ +
Sbjct: 64 MPVK-NIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIE 122
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR-------------FQGF 168
G +H R +D D+ NAL++MY + + ++DR G+
Sbjct: 123 LGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGY 182
Query: 169 GFNGGREASVHEVLDKIPERN 189
G E +V+ + +++P+RN
Sbjct: 183 FKEGLVEEAVN-LFNQMPDRN 202
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 40/208 (19%)
Query: 14 PVSIKTKSQA------KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
P ++KT S A KQ+H + K+ +S F +S L+ +Y+N N + D++ L D
Sbjct: 241 PCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSG 300
Query: 68 PAPP-----VAWKSIIRCCTQNGLLV-ESLTCFVRMIG----SGVYPDHNVFPSVLKSCT 117
V W S++ +G +V E V MI SG D S LK C
Sbjct: 301 GTGSICDSLVLWNSML-----SGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCI 355
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREAS 177
L++ R G VHA I+ G +LD + L+++YA+ NM D F+ F
Sbjct: 356 NLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMK----DAFKLF--------- 402
Query: 178 VHEVLDKIPERNGNVELSSGLAGCNKFE 205
++P+++ V S L GC K E
Sbjct: 403 -----HRLPKKD-IVAWSGLLMGCAKME 424
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+LK S+ + KQ+HA K + I+ L+ +Y+ V D L L +
Sbjct: 450 NVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCV-AD 508
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V W II C QNG E+L F +M+ SG+ P+ + VL +C
Sbjct: 509 RDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTAC 556
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 8/157 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ K INLL + I Q+HA I + + S L+ +Y + D+ L
Sbjct: 349 SALKVCINLLNVRLGI-------QVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKL 401
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L VAW ++ C + L +L+ F M+ GV D + +VLK C+ L
Sbjct: 402 FHRLPKK-DIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLAS 460
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VHA I+ G + + T AL++MY++ ++
Sbjct: 461 IGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVE 497
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +NG +L +M G+ D FP LK+C+ G+ +H
Sbjct: 204 VSWNTIIAGLAENGS-SRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCY 262
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
+++ G++ + +AL++MY+ +D + ++D++ G
Sbjct: 263 VLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSG 300
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S+ + QLH+ +FK + + LL +Y V +L + + L
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFN-L 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W I+ Q L +S F +M +G+ P+ +P +L++CT + G
Sbjct: 305 GNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E +H+ ++ G + D+Y + L++MY++
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSK 392
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + IK Q Q+HA+++ + + + L+ +Y + ++ + ++
Sbjct: 449 LASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRF 124
+ W ++ Q+GL E+L F+RM SGV HNVF S L + L + +
Sbjct: 509 HK-DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV--KHNVFTFVSALSASANLAEIKQ 565
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +HA +I+ G + NAL+++Y +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGK 594
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ KT + ++ L+ +Y+ + + + +L+ LK V+W S+I
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ ++L F M G++PD+ S + C + R G +HA + G D+
Sbjct: 423 QHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVS 482
Query: 143 TNNALMNMYAQ 153
NAL+N+YA+
Sbjct: 483 IWNALVNLYAR 493
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA+ R + + L+ +Y+ LV + + + L + V+W +++ QN
Sbjct: 63 EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEEL-SARDNVSWVAMLSGYAQN 121
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E+L + +M +GV P V SVL SCT F G SVHA + G + +
Sbjct: 122 GLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVG 181
Query: 145 NALMNMY 151
NAL+ +Y
Sbjct: 182 NALITLY 188
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q + +HAQ +K + F+ + L+ +Y +F L + T V + ++
Sbjct: 160 AQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDT----VTFNTL 215
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I Q +L F M SG+ PD S+L +C L D + G +H+ + + G+
Sbjct: 216 ISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGM 275
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D +L+++Y + +++
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVE 296
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ L ++ Q KQ+HA++ KT + + L+ +Y D+ +
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II C+Q+G +E+L F +M G+ S KS + R
Sbjct: 609 -SERNEVSWNTIITSCSQHGRGLEALDFFDQMKKEGL--------SYFKSMSDKYGIRPR 659
Query: 126 ESVHACII 133
+AC+I
Sbjct: 660 PDHYACVI 667
>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Brachypodium distachyon]
Length = 530
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
AW ++I C QNG E+++ F+RM+ V P+ F SV+ +C+ L + RFG V +
Sbjct: 249 AWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGLWVES 308
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
+ LG++LD + AL+++Y +S +D + + F+G
Sbjct: 309 FMCSLGIELDDHLRTALVDLYTKSGRID-NAFKLFRGL 345
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL-FIYNNFNLVHDSLC-LLDTLKTPAPPVAWK 75
K + KQ HAQ+F T + F +SRLL F + + C + + + P +
Sbjct: 16 KNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCIC-N 74
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+II+ NG + F +M+ +G+ PD+ P VLK+C L D G+ VH +L
Sbjct: 75 TIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKL 134
Query: 136 GVDLDLYTNNALMNMYAQSQNM--DMHIYDR 164
G+ D++ N+LM MY+ ++ H++D
Sbjct: 135 GLVFDIFVGNSLMAMYSVCGDVIAARHVFDE 165
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I QN E L F + + V PD ++F S+L +C L G +H +
Sbjct: 205 WGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLN 264
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDM 159
R V L + + +L++MYA+ N+++
Sbjct: 265 RKTVSLSIRLSTSLLDMYAKCGNLEL 290
>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T INLL S+ T + Q+HA I K + + + LL Y + + + +
Sbjct: 461 TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM 520
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I N LL +++ M+ G D F +VL +C + G
Sbjct: 521 SERRDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERG 580
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHAC IR ++ D+ +AL++MY++ +D
Sbjct: 581 MEVHACAIRACLESDVVIGSALVDMYSKCGRID 613
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L V+W S+I QN +++ + M +G+ P + S L SC L
Sbjct: 316 LMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILL 375
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ H I+LG+D+D+ +N L+ +YA++ ++
Sbjct: 376 GQQTHGEGIKLGLDMDVSVSNTLLALYAETGHL 408
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 22/202 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S TLI+ L + S+ +Q H + K + + LL +Y H + C
Sbjct: 354 MPSNFTLISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETG--HLAEC 411
Query: 61 L-LDTLKTPAPPVAWKSIIRCCTQNGLLV-ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ + V+W ++I +G V E++ F+ M+ +G P+ F ++L + +
Sbjct: 412 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 471
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L + +HA I++ V D NAL+ Y +S M+ +
Sbjct: 472 LSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEME------------------NC 513
Query: 179 HEVLDKIPERNGNVELSSGLAG 200
E+ ++ ER V +S ++G
Sbjct: 514 EEIFSRMSERRDEVSWNSMISG 535
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLLVDFRFGESVH 129
V W +I TQNG+ ++ MI G P+ F S +++C ++L + G +H
Sbjct: 7 VTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQLGMQIH 66
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
I++ D N L++MY +
Sbjct: 67 GLILKSPYANDASLCNVLISMYGK 90
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 20/154 (12%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
N LI+RL+ +Y+ + +DS CL+ W +++ +N L +++ FV
Sbjct: 127 NDVVLITRLVTMYSICDSPYDS-CLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVE 185
Query: 97 MIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
MI + PD+ P V+K+C + D R GE+VH ++ V D++ NAL+ MY +
Sbjct: 186 MISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGK-- 243
Query: 156 NMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
FGF E++V +V DK+P+RN
Sbjct: 244 ------------FGF---VESAV-KVFDKMPQRN 261
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++K V + + +H KT + F+ + L+ +Y F V ++ + D
Sbjct: 198 TLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFD-- 255
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKSCTLLVDF 122
K P V+W S++ C +NG+ ES F ++ G+ PD +V+ C +
Sbjct: 256 KMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEV 315
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R G H ++LG+ +L N++L++MY++
Sbjct: 316 RLGMVFHGLALKLGLCGELKVNSSLLDMYSK 346
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K+ S K++H + + F+ L+ +Y + + D +
Sbjct: 504 TIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNM 563
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W ++I +QN ++L F +M+ S ++PD L +C+ + R G
Sbjct: 564 EEKNL-VCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLG 622
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
+ +H ++ + + +L++MYA+ M+ +I+DR G+G +
Sbjct: 623 KELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIH 682
Query: 172 G-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
G GR+A + + + R +V + L CN
Sbjct: 683 GHGRKAIELFKSMQNAGFRPDSVTFIALLTACN 715
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I QNG ++L ++ M GSG+ PD S+L +C L G+ +H +
Sbjct: 469 SWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSM 528
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
+R G +LD + +L+++Y Q
Sbjct: 529 LRNGFELDEFICISLVSLYVQ 549
>gi|255564751|ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537458|gb|EEF39086.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 56 HDSLCLLDTLKTPA-PP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
++L +++ +K+ P V+W ++I C+QNG ESL F++M G+ P+ S+
Sbjct: 520 EEALAVINEIKSSGLTPNVVSWTALISGCSQNGNYKESLEFFIQMQQEGIKPNSTTVSSL 579
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
LK+C L + G+ +H ++ G D+Y AL++MY++S N+
Sbjct: 580 LKTCGGLSLLKKGKEIHCLSVKSGFTGDIYIATALVDMYSKSGNL 624
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 29/186 (15%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTL-----EPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L + +KT +HAQ+ KT + N+R LI+ L + +F S ++ +
Sbjct: 69 LDSSSDVKTLDSINAMHAQLIKTCSMWNSDSNARTLITSYLEL-GDFR----SSAMVFFV 123
Query: 66 KTPAPPVAWKSIIRCCTQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V W S + G ++ L F + GV D + VLK C ++D
Sbjct: 124 GFARNYVMWSSFMEEFENCGGDPIQVLNVFKELHSKGVTFDSGMVTVVLKICIRVMDLWL 183
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G VHA +I+ G +LD Y +AL++ Y + ++++ ++V
Sbjct: 184 GLEVHASLIKRGFELDTYVRSALLSYYERCWSLEI------------------ANQVFHD 225
Query: 185 IPERNG 190
+P+R+G
Sbjct: 226 MPDRDG 231
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++ +G E L +M +G P+ + SVL++ T L + G+ +H
Sbjct: 368 ITWNCLLSGHALHGSYKEVLMILQKMQVTGFRPNSSSITSVLQTVTELRLLKIGKGIHGY 427
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR ++ DLY +L++MY +
Sbjct: 428 VIRNRLNPDLYVEASLLDMYVK 449
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T+ +LL + ++ S+ K+LHA I +S L S+L Y + + L
Sbjct: 9 TTAAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHL 68
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLV 120
D L P +W +++R Q G ++L FV M+GSG PD +P V+K+C L
Sbjct: 69 FDKLSQPCL-FSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLS 127
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
G +H + G D D + N L+ MY N G + +
Sbjct: 128 LIDVGVGIHGQTFKFGYDSDTFVQNTLLAMY------------------MNAGEKEAAQL 169
Query: 181 VLDKIPER 188
V D + ER
Sbjct: 170 VFDPMQER 177
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQ------AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL 54
+ S +TL + PV IK +H Q FK + F+ + LL +Y N
Sbjct: 104 LGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGE 163
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
+ + D ++ ++W ++I +N +++ + RM+ GV PD SVL
Sbjct: 164 KEAAQLVFDPMQERTV-ISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLP 222
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+C LL + G VH + G ++ NAL++MY + M
Sbjct: 223 ACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQM 265
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLLDT 64
++ +LL S+ + K LHA + + + + L+ +Y N + S + T
Sbjct: 317 SIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGT 376
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P W +++ QN L E++ F +M+ V PDH F S+L + +L D +
Sbjct: 377 SKKRTAP--WNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQ 434
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
++H +IR G L + L+++Y++
Sbjct: 435 AMNIHCYLIRSGFLYRLEVASILVDIYSK 463
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I NG +L M GV P+ S+L +C LV G+ +HA
Sbjct: 281 VTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAW 340
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IR ++ ++ AL+NMYA+
Sbjct: 341 AIRQKIESEVIVETALINMYAK 362
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K Q+HA + K+ ++ S LL +Y ++ + + + V+W S+
Sbjct: 906 KDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPE-RNIVSWNSL 964
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG- 136
I C QNG + E+L FV M+ +G PD SV+ +C L R G VHA +++
Sbjct: 965 ITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDR 1024
Query: 137 VDLDLYTNNALMNMYAQ 153
D+ +NAL++MYA+
Sbjct: 1025 FREDMVLSNALVDMYAK 1041
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+AW +I QNG E+L FVR+ V+P H + +VL +C + D + G+ H
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151
Query: 132 IIR------LGVDLDLYTNNALMNMYAQSQNMD 158
+++ G + D++ N+L++MY ++ ++D
Sbjct: 1152 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+QLH I K ++ L + L+ +Y N L+ D+ D + P ++W I+R
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEP-NAISWNVIVRRYH 228
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G+ ++ F RM+ +GV P + +C G +HA ++R G + ++
Sbjct: 229 LAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVH 288
Query: 143 TNNALMNMYAQSQNMD 158
+++++MYA+ MD
Sbjct: 289 VRSSVVDMYAKCGAMD 304
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDS-LCLLDT 64
TL ++L I + +++HA K +S L + L+ +Y+ + + LL
Sbjct: 386 TLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFE 445
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + +W S+I ++ + +L +M S V P+ + F S L +C + +
Sbjct: 446 MGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQ 504
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
G +HA +IR G ++D + L++MY + + D I
Sbjct: 505 GMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSI 541
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F + + F + LL + D+ L + P ++ ++I Q+
Sbjct: 816 RVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDP-DQCSYNAVIAALAQHSRGA 874
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L M + F S L +C D R G VHA + + D+Y +AL+
Sbjct: 875 DALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALL 934
Query: 149 NMYAQSQ 155
+MYA+ +
Sbjct: 935 DMYAKCE 941
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA + K+ ++ S L+ +Y+ V + + + V W S+I C QN
Sbjct: 168 QVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQN 226
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYT 143
G E+L FVRM+ SG+ PD SV+ +C L + G +HA +++ DL
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 144 NNALMNMYAQSQ--NMDMHIYDRF 165
NAL++MYA+ N ++DR
Sbjct: 287 GNALVDMYAKCSKVNEARRVFDRM 310
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 30/183 (16%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ ++ LL + + ++ + +HA+I T F+ +RL+ +Y + + D+
Sbjct: 12 LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71
Query: 61 LLDTL-----------------------------KTPAP-PVAWKSIIRCCTQNGLLVES 90
L D + P P +W S++ Q+ ES
Sbjct: 72 LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
L FV+M + F S L +C L+D G VHA + + D+Y +AL++M
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191
Query: 151 YAQ 153
Y++
Sbjct: 192 YSK 194
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E+L F + ++P H F ++L +C L D G H
Sbjct: 347 VSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTH 406
Query: 132 IIRLGVDL------DLYTNNALMNMYAQSQNMD 158
+++ G + D++ N+L++MY + +++
Sbjct: 407 VLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIE 439
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T NLL ++ +Q H + F++ + F+ + L+ +Y + D
Sbjct: 383 TFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGS 442
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + +K V+W +II QNG E+L F +M+ G PDH VL +C+
Sbjct: 443 RVFEKMK-ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS 499
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ LI LL+ V+ K+ Q K LH ++ N ++ L+ +Y + NL + + D
Sbjct: 3 ARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFD 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR-MIGSGVYPDHNVFPSVLKSCTLLVDF 122
++ P ++ T+N + E+L F + M + PD +PSVLK+C L
Sbjct: 63 VIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRV 122
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H C+++ G+ +D+ ++L+ MYA+ +
Sbjct: 123 VLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFE 158
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSG 101
S L+ +Y N ++ L D + P VA W ++I C Q+G E+L F M G
Sbjct: 145 SSLVGMYAKCNEFECAVKLFDEM--PDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFG 202
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
PD + + SC L+D G +H ++ G +D + + AL++MY + ++M I
Sbjct: 203 FEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAI 262
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K +H I + FL S L+ +Y V + + L V+W +I
Sbjct: 326 EGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIF-KLMPKTTTVSWNVMISGY 384
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
G L ++L F M S V PD F SVL +C+ L G +H I+ + +
Sbjct: 385 VTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNE 444
Query: 142 YTNNALMNMYAQ 153
AL++MYA+
Sbjct: 445 VVMGALLDMYAK 456
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 18/201 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + +++H I + N+ ++ LL +Y V ++ + L
Sbjct: 411 TFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCL 470
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G + E+L F M+ S V PD F ++L +C+
Sbjct: 471 -PERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACS-------- 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA + VD LY N ++N+Y ++ Y GR +E+L
Sbjct: 522 ---HAGL----VDDGLYHFNQMINVYGIIPRIEH--YSCLITLLGRAGRLHEAYEILQSN 572
Query: 186 PERNGNVELSSGLAGCNKFEK 206
PE + + +L S L + K
Sbjct: 573 PEISDDFQLLSTLFSACRLHK 593
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++H ++ + F+ + L+ +Y + ++ + + + VAW S+I
Sbjct: 225 RGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTV-VAWNSMINGY 283
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
G + + F RM GV P S L +C+ G+ VH IIR + D+
Sbjct: 284 GFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDI 343
Query: 142 YTNNALMNMY 151
+ N++LM++Y
Sbjct: 344 FLNSSLMDLY 353
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 10 LLKNPVSI------KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN----LVHDSL 59
LL+NP S+ K+ Q Q+HAQ + F ISRL+ ++ L H L
Sbjct: 6 LLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRL 65
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTL 118
L + P W ++IR +++ E++ ++ MI G+ P +N FP +L SC
Sbjct: 66 -LFSQIDCP-NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR 123
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
L G VH+ II+ G + DL+ NAL+++Y+ N+++
Sbjct: 124 LSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNL 164
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 41/190 (21%)
Query: 23 AKQLHAQIFKTLEP--NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII-- 78
KQ+HAQ++K L ++ L S ++ +Y L++ + + T+ T AW S++
Sbjct: 231 GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290
Query: 79 --RC---------------------------CTQNGLLVESLTCFVRMIGSGVYPDHNVF 109
RC +Q G E+L F M G+ PD
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350
Query: 110 PSVLKSCTLLVDFRFGESVHACIIRLGV-DLDLYTNNALMNMYAQSQNMD--MHIYDRF- 165
+VL +C L F G+ ++ I GV + + A+M+MYA+ ++D + I+ R
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410
Query: 166 ----QGFGFN 171
GF FN
Sbjct: 411 KNMKTGFVFN 420
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL + + + ++H+ I K + F+ + L+ +Y+ F ++ + L D
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDE-SLVR 175
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V++ ++I+ + +L F M SG+ PD F ++ C++L + G+ +H
Sbjct: 176 DLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIH 235
Query: 130 ACIIR--LGVDLDLYTNNALMNMYAQ 153
A + + +D ++ +A+++MYA+
Sbjct: 236 AQVYKNLRSIDSNILLKSAIVDMYAK 261
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL LK + + +QLH+Q F+ LEP S ++ + LL +Y V + + D
Sbjct: 133 TLAFALKACSVVPALGEGRQLHSQAFRRGLEP-SPYVQTGLLNLYAKCEEVALARTVFDG 191
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ AW ++I ++ G++ E+L F M + V PD SV+ +C
Sbjct: 192 MVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDL 251
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VHA I R G+ +DL + AL++MYA+
Sbjct: 252 GRWVHAFIDRKGITVDLELSTALIDMYAK 280
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H F+ + F+ S L+ +Y N S+ + D L + W S++ C QN
Sbjct: 191 EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPV-RDHILWNSLLAGCAQN 249
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G + E+L F RM+ +GV P F S++ C L RFG+ +HA +I G + +++ +
Sbjct: 250 GSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFIS 309
Query: 145 NALMNMYAQSQNMDMH--IYDR 164
++L++MY + + + I+D+
Sbjct: 310 SSLIDMYCKCGEISIAHCIFDK 331
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV---FPSVLKSCTLLVDFRFGESVHA 130
W IR G ++++ F+RM S P +V P+ LKSC L G S+HA
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAA-PRSSVPASLPAALKSCAALGLSALGASLHA 74
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
IR G D +T NAL+N+Y +
Sbjct: 75 LAIRSGAFADRFTANALLNLYCK 97
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ C + G E+L +M G PD +VL D + G VH
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
R G D D++ ++L++MYA D + +V D +P R+ +
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSV------------------KVFDNLPVRD-H 236
Query: 192 VELSSGLAGCNK 203
+ +S LAGC +
Sbjct: 237 ILWNSLLAGCAQ 248
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+LI + N S++ KQLHA + ++ F+ S L+ +Y + + C+ D +
Sbjct: 276 SLIPVCGNLASLRF---GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM 332
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+P V+W ++I +G E+L F RM P+H F +VL +C+
Sbjct: 333 SSP-DVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 383
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C +NG VE+L CFV M SGV D SVL + +L D FG VH
Sbjct: 170 VSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGF 229
Query: 132 IIRLG-VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN- 189
+ G V D+Y +AL++MY++ D + +V +++P RN
Sbjct: 230 YVESGRVIWDVYVGSALVDMYSKCGYCDDAV------------------KVFNEMPTRNL 271
Query: 190 -GNVELSSGLAGCNKFEK 206
L +G CN++++
Sbjct: 272 VSWGALIAGYVQCNRYKE 289
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+L L D L TP + W +I+R + + L + R+ GV PD + FP +LK+ +
Sbjct: 57 TLLLFDRLATPYIFL-WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFS 115
Query: 118 LLVD---FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
L + F+F +A I++ G+D D + N+L++ +A +D
Sbjct: 116 KLRNENPFQF----YAHIVKFGLDFDAFVQNSLVSAFAHCGYVD 155
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ Q G ESL F +M V PD +VL +C L DF G SVHA
Sbjct: 334 VSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAF 393
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREAS 177
I+ G+ +D + NAL+++YA+ +D + +++ GF +GG + +
Sbjct: 394 IVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKA 453
Query: 178 VHEVLDKIPERN 189
+ +KIPE++
Sbjct: 454 -RDFFNKIPEKD 464
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++H +I K ++ L + L+ +Y+ + + +C L T ++W ++I C
Sbjct: 152 GSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKE-VCQLFEKMTHRDVISWNTMISCYV 210
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G+ E+L F M+ SGV PD S++ +C L D G+ +H I VD L+
Sbjct: 211 LKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYI----VDNKLW 266
Query: 143 TNNALMN----MYAQSQNMD 158
+L+N MY++ MD
Sbjct: 267 IRGSLLNCLVDMYSKCGKMD 286
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 7 LINLLKNPVSIKTKS--QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+I+LLK+ +I+ S A + A + E S+ L L NN + H L +
Sbjct: 38 IIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVL--AFLLSVNNLDCAHQIL----S 91
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ W +++ + G E L C+ M+ GV D + F ++ +C D +
Sbjct: 92 YSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKL 151
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH I++ G + NN LM +Y++
Sbjct: 152 GSEVHGRILKCGFGRNKSLNNNLMGLYSK 180
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ ++ L ES F +M S V PD S+L SC + G V+
Sbjct: 466 VSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVY 525
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
I + + +D AL++MY + ++M
Sbjct: 526 IEKNEIGIDAMLGTALIDMYGKCGCVEM 553
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIR 79
SQ KQ+HA I + +++++L+ + ++ S LL + P P W ++IR
Sbjct: 56 SQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVD 138
GLL ES + RM GV P F ++ K+C ++ G+ VHA I + G
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175
Query: 139 LDLYTNNALMNMYAQ 153
DLY N+++++Y +
Sbjct: 176 SDLYVGNSMIDLYVK 190
>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Z KQ+HA + K + ++ S +L +Y + ++ + + + P VAW S+I C
Sbjct: 484 ZGKQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAP-DDVAWTSMISGC 542
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG ++L + +M SGV PD F +++K+ + + G +HA +I+L D
Sbjct: 543 VDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDP 602
Query: 142 YTNNALMNMYAQSQNMD 158
+ +L++MYA+ N++
Sbjct: 603 FVGTSLVDMYAKCGNIE 619
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++Q+H KT F+ + L+ +Y+ + ++ L K W +++
Sbjct: 384 SRQIHVHALKTSNIADSFVATALIDVYSRSGKMEEAELLFQN-KDDLDLACWNAMMFGYI 442
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ++L F + SG D + K+C LV G+ +HA +I+ G DLY
Sbjct: 443 ISNDGNKALGLFSLINRSGEKSDQITLATAAKACGCLVLLDZGKQIHAHVIKAGFXSDLY 502
Query: 143 TNNALMNMYAQSQNM 157
N+ +++MY + +M
Sbjct: 503 VNSGILDMYIKCGDM 517
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T L+K + Q +QLHA + K + F+ + L+ +Y + D
Sbjct: 564 MPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYR 623
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L + V W +++ Q+G E++ F M G+ PD F +L +C+L
Sbjct: 624 LFKKMNV-RNIVLWNAMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSL 680
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL+ +S K HA+I + FL + LL +Y+ + + + DT TP
Sbjct: 89 SLLRTAISTHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQVFDT--TP 146
Query: 69 APP-VAWKSIIRCCT----------QNGL-----LVESLTCFVRMIGSGVYPDHNVFPSV 112
V W +I+ Q GL L ESL RM V
Sbjct: 147 ERDLVTWNAILGAYASSVDSNDGNAQEGLHLFRLLRESLGSTTRM----------TLAPV 196
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
LK C+ + VH I++G+ D++ LMN+Y++ M
Sbjct: 197 LKLCSNSXCLWAAKGVHGYAIKIGLVWDVFVFGTLMNIYSKCGRM 241
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LLK VS + + +++HA + +T S F+ LL Y LV + D +
Sbjct: 93 TFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEM 152
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V W IIR ++L F M G+ PD +V+ +C LL D
Sbjct: 153 RQPGL-VLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVA 211
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+++H I + G+++D + ++ L++ Y + ++D + Y FQ
Sbjct: 212 KAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD-YAYRFFQ 251
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 74 WKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
W ++IR +NGL+ L +++ + +G+ P+ + F +LK+ + + GE VHA
Sbjct: 57 WNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHAS 116
Query: 132 IIRLGVDLDLYTNNALMNMY 151
++R G + + AL+ Y
Sbjct: 117 VVRTGFACSEFVSGALLGFY 136
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + G E+LT F M SGV P+ S L +C G +HA
Sbjct: 290 VSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAY 349
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + ++ D +++L++MY++ ++D
Sbjct: 350 VDKNDMNRDGSLDSSLIDMYSKCGDID 376
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIR 79
SQ KQ+HA I + +++++L+ + ++ S LL + P P W ++IR
Sbjct: 56 SQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVD 138
GLL ES + RM GV P F ++ K+C ++ G+ VHA I + G
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175
Query: 139 LDLYTNNALMNMYAQ 153
DLY N+++++Y +
Sbjct: 176 SDLYVGNSMIDLYVK 190
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
K + +++HA +F++ ++R I L +Y + D+ C + L V+W S+I
Sbjct: 471 KRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAI-DNACSVFQLMPSKDTVSWNSMI 529
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
N E+++CF M +G+ P + S L SC+ L G +H + G+D
Sbjct: 530 SGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLD 589
Query: 139 LDLYTNNALMNMYAQSQNMD--------MHIYDRFQGFGFNGG---REASVHEVLDKIPE 187
LD+ +NAL+ +YA++ +++ M YD+ F G EASV + L E
Sbjct: 590 LDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLE 649
Query: 188 ------RNGNVELSSGLAGCNKFEKRVVSAGH 213
R V + LA + F V+ GH
Sbjct: 650 MMQAGWRPNRVTFINILAAVSSFS--VLGLGH 679
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T IN+L S Q+HA I K + + + LL Y + D + +
Sbjct: 661 TFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRM 720
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I +G+L +++ M+ G D F +VL +C + G
Sbjct: 721 SERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERG 780
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHAC +R ++ D+ +AL++MYA+ +D
Sbjct: 781 MEVHACAVRACLESDVVVGSALVDMYAKCGKID 813
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A LH Q++KT + F + L+ IY + + L D + V+W +I T
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQK-NLVSWSCLISGYT 217
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL--VDFRFGESVHACIIRLGVDLD 140
QN + E+ + F +I SG+ P+H S L++C + G +HA I +L D
Sbjct: 218 QNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSD 277
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ +N LM+MY+ G H V D+I RN
Sbjct: 278 MILSNVLMSMYSDCS-----------------GSIDDAHRVFDEIKFRN 309
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++I+ L + S+ + +Q+H + FK + + LL +Y + +++ C
Sbjct: 556 SNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINE--CQK 613
Query: 63 DTLKTPA-PPVAWKSIIRCCTQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ P V+W S I + ++++L F+ M+ +G P+ F ++L + +
Sbjct: 614 VFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFS 673
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +HA I++ V D NAL+ Y + + M+
Sbjct: 674 VLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQME 711
>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Glycine max]
Length = 681
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT- 64
TL N+L ++ KQ+H+ + KT S+F +S L+ +Y+ ++ L +
Sbjct: 120 TLTNMLNLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSC 179
Query: 65 -----------------------------LKTPA--PPVAWKSIIRCCTQNGLLVESLTC 93
K P V+W ++I +QNG + +SLT
Sbjct: 180 DEMVDLVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTF 239
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FV MI +G+ + + SVL +C+ L + G+SVHA +++ G + + ++ +++ Y++
Sbjct: 240 FVEMIENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSK 299
Query: 154 SQNM 157
N+
Sbjct: 300 CGNI 303
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
PD + S+L +C + D G+ +HA I+R+ +D ++L++MY++ N+
Sbjct: 383 PDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNV 436
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + ++ + + KQ+H + K + ++++ L+ +Y + + D+ D L
Sbjct: 312 TFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V W S+I QNG ++L+ + RM G+ P+ SVLK+C+ L G
Sbjct: 372 QEP-DIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG 430
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA ++ G L++ +AL MYA+
Sbjct: 431 KQIHARTVKYGFGLEVPIGSALSTMYAK 458
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S ++ L ++ + K LHAQI K+ + ++ + L+ +Y + ++
Sbjct: 3 LPSNRSFFTALLQYTHNRSLQKGKALHAQIIKS-SSSCVYIANSLVNLYAKCQRLREAKF 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ + ++ V+W II +Q+G S + F RM P+ + F V + +
Sbjct: 62 VFERIQNK-DVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAST 120
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
LVD G HA I++ D++ ++LMNMY ++ G
Sbjct: 121 LVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKA------------------GLTPEA 162
Query: 179 HEVLDKIPERN 189
+V D +PERN
Sbjct: 163 RKVFDTMPERN 173
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y + D+L +T + + W ++I Q+G ++L F M SG+ P
Sbjct: 250 LVTMYAKCGSLDDALQTFET-SSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRP 308
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
F V+ +C+ L G+ VH +++LG + +Y AL++MYA+ + I D
Sbjct: 309 SEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSS----IVDA 364
Query: 165 FQGFGF 170
+GF +
Sbjct: 365 RKGFDY 370
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK S+ Q KQ+HA+ K + S L +Y + D +
Sbjct: 413 TMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR-- 470
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ PA V +W ++I +QNG E+L F M G PD+ F ++L +C+
Sbjct: 471 RMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 27 HAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86
HA K F+ S L+ +Y L ++ + DT+ V+W ++I L
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWATMISGYASQKL 189
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
E+L F M + VF SVL + TL G+ +H ++ G+ + NA
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNA 249
Query: 147 LMNMYAQSQNMDMHIYDRFQGF 168
L+ MYA+ ++D D Q F
Sbjct: 250 LVTMYAKCGSLD----DALQTF 267
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCL 61
S +L +L+++ VS + + HAQI KTL+ P F+ + L+ +Y+ + + + L
Sbjct: 5 SPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLL 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L +L V W ++I QNG +L F M + P+ FP K+ L
Sbjct: 65 L-SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ VHA ++ G D++ + +MY+++ G ++
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKA------------------GLTEEARKM 165
Query: 182 LDKIPERN 189
D++PERN
Sbjct: 166 FDEMPERN 173
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
K S+++ KQ+HA K + + F+ +Y+ L ++ + D + P
Sbjct: 115 FKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEM--PER 172
Query: 71 PVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
+A W + + G ++LT F+ G+ P + SVL +C L G+SVH
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH 232
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ V +++ +AL++MY + +++ D++PERN
Sbjct: 233 TLAVKACVVGNIFVGSALVDMYGKCGSIE------------------DAERAFDEMPERN 274
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++ + T++N+L + + +H +I K +S + S LL +Y+ F + +
Sbjct: 339 LSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANS 398
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ T+K VAW S+I QN E+L F M V PD ++ S++ +CT L
Sbjct: 399 IFSTMK-ERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLE 457
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
G ++H +I+ G+ LD++ ++L++MY++ FGF
Sbjct: 458 KVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSK--------------FGF---------- 493
Query: 181 VLDKIPERNGNV 192
PER GN+
Sbjct: 494 -----PERAGNI 500
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + K+ F+ S LL +Y+ F + + + VAW SII C +N
Sbjct: 465 IHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNL-VAWNSIISCYCRNN 523
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
L S+ F +++ + +YPD F SVL + + + G+SVH ++RL + DL N
Sbjct: 524 LPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVEN 583
Query: 146 ALMNMYAQSQNMD--MHIYDRFQ------------GFGFNGGREASVHEVLDKIPE---R 188
L++MY + + HI++R G+G +G ++ E+ D++ +
Sbjct: 584 TLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAI-ELFDEMRSSGIK 642
Query: 189 NGNVELSSGLAGCN 202
+V S L+ CN
Sbjct: 643 PDDVTFLSLLSSCN 656
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQ+H+ I + + FL + L+ Y ++ L LK + VAW +I
Sbjct: 157 EGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGF 216
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+NGL SL ++ V + F L +C FG+ VH I++G + D
Sbjct: 217 GENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDP 276
Query: 142 YTNNALMNMYAQSQNMD 158
Y + +L+ MY + Q ++
Sbjct: 277 YVHTSLLTMYGKCQMIE 293
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I+ Q +E+L + + S VY +PS+LK+C L + ++G+++H+ II G+
Sbjct: 28 IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84
Query: 138 DLDLYTNNALMNMYAQ 153
D Y ++L+N+Y +
Sbjct: 85 HSDQYITSSLINIYVK 100
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 49/242 (20%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T+ T +LLK S+ K +H+ I T + +++ S L+ IY D++ +
Sbjct: 51 TTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKV 110
Query: 62 LDTLKTPAPPV----AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
D L V W SII + G L E + F RM SG
Sbjct: 111 FDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSG---------------- 154
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY------AQSQNMDMHIYDR------- 164
++ G+ +H+ I+R ++ D + AL++ Y +++ + + DR
Sbjct: 155 ----YKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWN 210
Query: 165 --FQGFGFNGGREASVHEVLDKIPERNGNVELSSG-----LAGCNKFEKRVVSAGHDADL 217
GFG NG E S+ L E NV++ S L+ C + E VS G
Sbjct: 211 VMIGGFGENGLWENSLEYYLLAKTE---NVKVVSSSFTCTLSACGQGE--FVSFGKQVHC 265
Query: 218 DA 219
DA
Sbjct: 266 DA 267
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIR 79
S KQ+H K + ++ + LL +Y ++ + + + + P + W ++I
Sbjct: 258 SFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN--EVPDKEIELWNALIS 315
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
NG ++L + +M V D +VL S ++ + G +H I++ +
Sbjct: 316 AYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQS 375
Query: 140 DLYTNNALMNMYAQ 153
+ +AL+ MY++
Sbjct: 376 SITIQSALLTMYSK 389
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA + K+ ++ S L+ +Y+ V + + + V W S+I C QN
Sbjct: 168 QVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQN 226
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYT 143
G E+L FVRM+ SG+ PD SV+ +C L + G +HA +++ DL
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 144 NNALMNMYAQSQ--NMDMHIYDRF 165
NAL++MYA+ N ++DR
Sbjct: 287 GNALVDMYAKCSKVNEARRVFDRM 310
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--- 65
LL + + ++ + +HA+I T F+ +RL+ +Y + + D+ L D +
Sbjct: 20 KLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQR 79
Query: 66 --------------------------KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMI 98
P P +W S++ Q+ ESL FV+M
Sbjct: 80 NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ F S L +C L+D G VHA + + D+Y +AL++MY++
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSK 194
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 31 FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90
F L + F+ + L+ +Y + D + + +K V+W +II QNG E+
Sbjct: 384 FGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVGYAQNGYGAEA 442
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L F +M+ G PDH VL +C+
Sbjct: 443 LQIFRKMLVCGEKPDHVTMIGVLCACS 469
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + ++ + + KQ+H + K + ++++ L+ +Y + + D+ D L
Sbjct: 312 TFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V W S+I QNG ++L+ + RM G+ P+ SVLK+C+ L G
Sbjct: 372 QEP-DIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG 430
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA ++ G L++ +AL MYA+
Sbjct: 431 KQIHARTVKYGFGLEVPIGSALSTMYAK 458
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S ++ L ++ + K LHAQI K+ + ++ + L+ +Y + ++
Sbjct: 3 LPSNRSFFTALLQYTHNRSLQKGKALHAQIIKS-SSSCVYIANSLVNLYAKCQRLREAKF 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ + ++ V+W II +Q+G S + F RM P+ + F V + +
Sbjct: 62 VFERIQNK-DVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAST 120
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
LVD G HA I++ D++ ++LMNMY ++ G
Sbjct: 121 LVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKA------------------GLTPEA 162
Query: 179 HEVLDKIPERN 189
+V D +PERN
Sbjct: 163 RKVFDTMPERN 173
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y + D+L +T + + W ++I Q+G ++L F M SG+ P
Sbjct: 250 LVTMYAKCGSLDDALQTFET-SSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRP 308
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
F V+ +C+ L G+ VH +++LG + +Y AL++MYA+ + I D
Sbjct: 309 SEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSS----IVDA 364
Query: 165 FQGFGF 170
+GF +
Sbjct: 365 RKGFDY 370
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK S+ Q KQ+HA+ K + S L +Y + D +
Sbjct: 413 TMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR-- 470
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ PA V +W ++I +QNG E+L F M G PD+ F ++L +C+
Sbjct: 471 RMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 27 HAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86
HA K F+ S L+ +Y L ++ + DT+ V+W ++I L
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWATMISGYASQKL 189
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
E+L F M + VF SVL + TL G+ +H ++ G+ + NA
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNA 249
Query: 147 LMNMYAQSQNMDMHIYDRFQGF 168
L+ MYA+ ++D D Q F
Sbjct: 250 LVTMYAKCGSLD----DALQTF 267
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Query: 5 KTLINLLKNPV-SIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ L LL+ P +I T K++HA I + FL++ LL Y+ NL D+ L
Sbjct: 51 RELGKLLQLPSPNILTSHYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLF 110
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVD 121
DT+ V W S++ TQ+G VE+L F R + S P+ + SV+++CT L +
Sbjct: 111 DTM-PHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGN 169
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H +++ G D+Y +L++ YA+ +D
Sbjct: 170 LSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVD 206
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
SQA QLH + K ++ + L+ Y V ++ + D LK V W +II
Sbjct: 171 SQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTT-VTWTAIIAG 229
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G SL F +M VYPD V SVL +C++L G+ +H ++R G D+D
Sbjct: 230 YAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMD 289
Query: 141 LYTNNALMNMY 151
+ N +++ Y
Sbjct: 290 VSVVNGIIDFY 300
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C QN +++ FV M+ G PD SVL SC L + G VHA
Sbjct: 322 VSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAY 381
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I++ +D D + N L++MYA+ ++
Sbjct: 382 AIKVNIDNDDFVKNGLIDMYAKCDSL 407
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I K F S L+ +Y+ + V D+ + + + V W ++ +Q
Sbjct: 478 QIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEI-YDRDIVVWNAMFSGYSQQ 536
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
ESL + + S + P+ F +V+ + + + R G+ H +I++G+D D +
Sbjct: 537 LENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVT 596
Query: 145 NALMNMYAQSQNMD 158
N+L++MYA+ +++
Sbjct: 597 NSLVDMYAKCGSIE 610
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ +I + +Q H Q+ K + F+ + L+ +Y + +S +
Sbjct: 560 TFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSS- 618
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT----LLV 120
T +A W S+I Q+G ++L F RMI GV P++ F +L +C+ L +
Sbjct: 619 -TNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDL 677
Query: 121 DFRFGESVHACIIRLGVD 138
F ES+ I G+D
Sbjct: 678 GFHHFESMSKFGIEPGID 695
>gi|359359183|gb|AEV41088.1| putative pentatricopeptide [Oryza minuta]
Length = 760
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ +L LL+ ++ + H+Q S + + LL +Y+ D+ +
Sbjct: 161 TAPSLCALLRAAGELRDRRAGAAAHSQAVTLGFLASDIVPTALLQMYSQCGAPRDANQVF 220
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + T VAW ++ C + G L +L F RM+ G+ P + SVL C D
Sbjct: 221 DEMAT-RDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGLPPTESTLSSVLSGCGRAGDC 279
Query: 123 RFGESVHACIIRL-GVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
R G ++H +++L +D D+ NAL++MY+ +++ + +++R +
Sbjct: 280 RRGRALHGWVVKLEELDPDMPLQNALLDMYSSCGDLETALRVFERIE 326
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 22 QAKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ + LH + K L+P+ L + LL +Y++ + +L + + ++TP V+W ++I
Sbjct: 281 RGRALHGWVVKLEELDPDMP-LQNALLDMYSSCGDLETALRVFERIETP-DLVSWNTLIA 338
Query: 80 CCTQNGLLVESLTCFVRM----IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+ G ++ FV++ V PD +V+ +C L G+ +HA +I+
Sbjct: 339 GFSGVGDGCSAMDAFVQLKAVQFDEWVVPDEYTLAAVVSACATLPAMFGGKPLHAEVIKA 398
Query: 136 GVDLDLYTNNALMNMY 151
G++ ++ N L+NMY
Sbjct: 399 GLESSVFVGNTLLNMY 414
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 20/220 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++ ++ K LHA++ K +S F+ + LL +Y + L +L
Sbjct: 371 TLAAVVSACATLPAMFGGKPLHAEVIKAGLESSVFVGNTLLNMYFTNEEPGSARILFHSL 430
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++ + G +L FV M+ G D S L S L + G
Sbjct: 431 NQ-KDVIMWTEMVAGHSLLGEGEMALKYFVSMLQEGYKVDSFSLSSALNSTAELAGLKQG 489
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQS-------------QNMDMHIYDR-FQGFGFN 171
E +HA +++ G + ++ + +L++MYA++ Q D+ ++ G+G +
Sbjct: 490 EMLHAEVVKSGYEGNICASGSLVDMYAKNGALPGAYLVFSNIQKPDLKCWNSIIGGYGNH 549
Query: 172 GGREASVHEVLDKI-----PERNGNVELSSGLAGCNKFEK 206
G E + + I P+ + L S + C EK
Sbjct: 550 GNSEMAFKLFGEMIRDGLQPDHVTYISLLSACSHCGLVEK 589
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LL V + K+LH + + F+ + L+ +Y F + + + +
Sbjct: 323 TLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENI 382
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I TQNG E+ + M +G P+ ++L +C+ + + G
Sbjct: 383 EVR-NVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMG 441
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDRFQ--GFGFN 171
+ +HA IR + DL+ +NAL+++YA+ N+ +I+DR + G +N
Sbjct: 442 KQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSEKDGVSYN 491
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ NG+L ++ V M+ SGV + S+L +C D FG VH
Sbjct: 186 VSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGL 245
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+++ G++ + NAL++MY + +++ MH+++ Q
Sbjct: 246 VLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQ 282
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+NLL + + KQ+HA + + F+ + L+ +Y ++ + + D
Sbjct: 424 TLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFD-- 481
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ V++ ++I +Q+ ESL F +M +G+ D F L +C+ L F+ G
Sbjct: 482 RSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQG 541
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H +++ +D + N+L+++Y + +D
Sbjct: 542 KEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLD 574
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y F + S+ + + ++ V+W S I C G + L F M V P
Sbjct: 261 LVDMYGKFGDLESSMHVFNGMQEK-NEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTP 319
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
S+L + L F G+ +H IR V+ D++ N LM+MYA+
Sbjct: 320 GSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAK 368
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF---GESVHA 130
W S+ R L E+L + RM+ SGV PD FP L + + G +HA
Sbjct: 83 WNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHA 142
Query: 131 CIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+R G+ L D++ N L+ YA GR A V D++P R+
Sbjct: 143 AALRRGLLLADVFAGNTLVTFYAVC------------------GRAADARRVFDEMPARD 184
>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Cucumis sativus]
Length = 710
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 12 KNPVS----IKTKSQAKQLHA--QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
KNPVS +K + + ++ ++F+ + + ++ ++ +Y+ + + L +++
Sbjct: 332 KNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESV 391
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K+ PV W S+I C QN +L ++ M + V + F ++ ++CT L + G
Sbjct: 392 KSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLG 451
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
+++H IR D ++Y +L++MYA+ + IYD F
Sbjct: 452 QALHVHAIREAFDSNVYVGTSLIDMYAKCGS----IYDAQTSFA 491
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCCTQN--- 84
Q+F L + L LL Y NL+ D+L L +K P V AW ++I ++
Sbjct: 159 QVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLF--MKIPTRDVVAWTTMISAYARSEHN 216
Query: 85 ---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
GL L C +RM G V P+ F SV+++C + +G+ VH + + G D
Sbjct: 217 CKRGL---ELFCSMRMNGE-VEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDH 272
Query: 142 YTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHEVLDKIPE 187
+AL+ Y Q + +D +YD +G F GR E+ K+ E
Sbjct: 273 SVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIF-AGRINDAEEIFCKLRE 331
Query: 188 RN 189
+N
Sbjct: 332 KN 333
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+LH I KT + L + L+ +Y L+ D+L L + L P++W SI+
Sbjct: 22 GKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPH-RDPISWASILTANN 80
Query: 83 QNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q L +L+ F M G+ PDH VF ++K+C +L + G+ VHA I V D
Sbjct: 81 QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140
Query: 142 YTNNALMNMYAQ 153
++L++MYA+
Sbjct: 141 VVKSSLVDMYAK 152
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I Q+G V+S F+ M G+ D + S++ + L G+ +H
Sbjct: 203 LSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHC 262
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
+I LG + L+ +NAL++MYA+ ++
Sbjct: 263 LVILLGYESSLFVSNALVDMYAKCSDV 289
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII Q+GL E+L+ + RM+ +G+ P+ F ++ +C+ + G
Sbjct: 305 VSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNS 364
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
+I+ G++ L L+++ ++S +++
Sbjct: 365 MIKDYGINPSLQHYTCLLDLLSRSGHLE 392
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP 71
K +K+ S +H +I ++ +++ + LL +Y NF V + + D +K
Sbjct: 125 KAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNR-DV 183
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +NG + ++L F M+ GV PDH S+L C L G +VH
Sbjct: 184 ISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKL 243
Query: 132 I--IRLGVDLDLYTNNALMNMYAQSQNMD 158
+ RLG +++ NAL+NMY + MD
Sbjct: 244 VEEKRLGDKIEV--KNALVNMYLKCGRMD 270
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S K +LL + + ++ S+ K LH + T S ++S L Y + + L
Sbjct: 14 SVKQYQSLLNHYAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALCGHIAYARKLF 72
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV--YPDHNVFPSVLKSCTLLV 120
D + + +++ +IR ++GL +++ F+RM+ G+ PD +P V K+ L
Sbjct: 73 DEMP-QSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELK 131
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G +H I+R +D Y NAL+ MY ++M
Sbjct: 132 SISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEM 170
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +II C QN L+ ++L F RM V P+ S+L + L D R ++H +
Sbjct: 388 WSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLT 447
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ G L L+++Y++ ++
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLE 472
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 34/210 (16%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++HA I K S FL+++++ + N++ + L + P + ++IR
Sbjct: 74 ELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNA-FLYNAMIRAY 132
Query: 82 TQNGLLVESLTCFVRMIGSG-----VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
N + V ++T + +M+G+ ++PD FP V+KSC L+ + G+ VH + + G
Sbjct: 133 KHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 192
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNV---- 192
+ N+L+ MY + ++D H V +++ ER+ +
Sbjct: 193 QKSNTVVENSLVEMYVKCDSLD------------------DAHRVFEEMTERDATIFSWT 234
Query: 193 ELSSGLA--GCN----KFEKRVVSAGHDAD 216
+ SG A GC +F +R+ G + D
Sbjct: 235 AIVSGYARIGCYADALEFFRRMQMVGIEPD 264
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL-KTPAPPVAWKSIIRCC 81
KQ+H +FK + ++ + + L+ +Y + + D+ + + + + A +W +I+
Sbjct: 181 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGY 240
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ G ++L F RM G+ PD SVL C L G+ +H + G ++
Sbjct: 241 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNI 300
Query: 142 YTNNALMNMYAQSQNMD 158
NAL+ MYA+ ++D
Sbjct: 301 CVCNALIEMYAKCGSID 317
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L+ K AKQ+H I K+ ++ ++L+ IY + ++ + DTL
Sbjct: 7 TYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFDTL 66
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
W +I +N +++ + +M +GV P+ F ++LK+CT + ++G
Sbjct: 67 -VEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWG 125
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H I G DL NAL++MYA+ +MD
Sbjct: 126 RKIHDHIRHAGFQSDLRLGNALIHMYARCGSMD 158
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
T T +++L K++H+ + LE + R + + L+ +Y + D+ +
Sbjct: 207 TTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVR-VGTALVHMYARSGSIKDARLVF 265
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK-SCTLLVD 121
D + T + W S+I Q+G +E+ + F +M G+ PD + ++L +C
Sbjct: 266 DKM-TERNIITWNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGA 324
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ VH ++G+D D+ NAL++MYA+ +MD
Sbjct: 325 LQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMD 361
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL+++L S + + K++H+ + LE + R + S L+ Y + D+ + +
Sbjct: 513 TLVSILNACASTRALDRVKEVHSHALEAGLESDLR-VGSALVHTYAKCGRIDDARLVFEG 571
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + + W +I Q+G E+ + F++M G PD + S+L + +
Sbjct: 572 MASR-DIITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEW 630
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH +R G D D ++AL++MY + ++D
Sbjct: 631 VKEVHRHAVRAGFDTDPRVSSALVHMYTKCGDID 664
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDT 64
T +++L S K++H E +S + L+ +Y + ++ + D
Sbjct: 412 TYLSILNGKASTGALEWVKEVHTHAVNA-ELDSHLRVGNALIHMYAKCGSIENARLVFDR 470
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ ++W ++I QNG E+ + F+ M G PD S+L +C
Sbjct: 471 MEDR-DIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACASTRALDR 529
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH+ + G++ DL +AL++ YA+ +D
Sbjct: 530 VKEVHSHALEAGLESDLRVGSALVHTYAKCGRID 563
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N+LK S +++H I + L + L+ +Y + D+ + + +
Sbjct: 108 TFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGM 167
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+G E+ + F++M G PD + S+L + +
Sbjct: 168 -VDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANACTGALGWV 226
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VH+ +R G++ D+ AL++MYA+S ++ ++A + V DK+
Sbjct: 227 KEVHSHALRAGLESDVRVGTALVHMYARSGSI----------------KDARL--VFDKM 268
Query: 186 PERN 189
ERN
Sbjct: 269 TERN 272
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I Q+G E+ + F++M G P+ + S+L + + VH
Sbjct: 376 VSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTH 435
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGFNG-GREA 176
+ +D L NAL++MYA+ +++ ++DR + G NG GREA
Sbjct: 436 AVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREA 495
Query: 177 SVH 179
H
Sbjct: 496 FSH 498
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I KT N F+ + L+ +Y VH + + + +K + V W S+I +QN
Sbjct: 622 QIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSL-VTWNSMICGFSQN 679
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G VE++T F +M + V D F SV+++C+ L G+ VH +I G+ D Y +
Sbjct: 680 GYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 739
Query: 145 NALMNMYAQSQNMDMH--IYDRFQ------------GFGFNGGREASV 178
AL +MY++ + M ++DR G+G +G A++
Sbjct: 740 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATI 787
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89
I + ++P FL L+ +Y + + D + +T+K ++W ++I T+NG E
Sbjct: 526 IRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI-LSWNTLISIFTRNGQPEE 584
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
+L FV+M G+ PD S L +C + + G +H II+ G + + + NAL++
Sbjct: 585 ALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALID 643
Query: 150 MYAQ 153
MYA+
Sbjct: 644 MYAK 647
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL----KTPAPPVAWKSIIRCCT-- 82
++F T F+ L+ Y +++ L + +T + S+++ C+
Sbjct: 401 RVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGF 460
Query: 83 -------QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF--------GES 127
+NG E L F +MI V PD SV ++C+ L R G S
Sbjct: 461 GDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRS 520
Query: 128 VHACIIRLGVDLDL-YTNNALMNMYAQSQNM 157
VH +IR +D +L + ALM +YA + N+
Sbjct: 521 VHGFVIRRAMDPELDFLGPALMELYADTGNL 551
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T + QLHA +F T ++L+ Y + S + DT P W +I
Sbjct: 360 TSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP-DSFMWGVLI 418
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHN-----VFPSVLKSCTLLVDFRFG 125
+C G E+++ + M VY D VFPSVLK+C+ D G
Sbjct: 419 KCYVWGGFFEEAVSLYHEM----VYQDQTQISNFVFPSVLKACSGFGDLSVG 466
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K+ + KQ+HA I K F S L+ + + + + + ++ P +
Sbjct: 42 KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGS-FEYN 100
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++IR + L E+L +V M+ G+ PD+ +P VLK+C+LLV + G +HA + +
Sbjct: 101 TMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKA 160
Query: 136 GVDLDLYTNNALMNMYAQ 153
G+++D++ N L++MY +
Sbjct: 161 GLEVDVFVQNGLISMYGK 178
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ Q+HA +FK F+ + L+ +Y + + + + + + +W SII
Sbjct: 149 EGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV-ASWSSIIGAH 207
Query: 82 TQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ E L M G G + + ++ S L +CT L G +H ++R +L+
Sbjct: 208 ASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELN 267
Query: 141 LYTNNALMNMYAQSQNMD 158
+ +L++MY + +++
Sbjct: 268 VVVKTSLIDMYVKCGSLE 285
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC----LLDTLKTPAPPVAWKSI 77
Q K+ HAQ+ F +SRLL ++ +H SL L ++ P + ++
Sbjct: 20 QLKEAHAQVLTCGLGTDSFALSRLLAFCSH--PLHGSLPHAWKLFQQIQHPTICIC-NTM 76
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I+ G L+ ++ + +M+ +G+YPD+ P VLK+C L GES H ++LG
Sbjct: 77 IKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGF 136
Query: 138 DLDLYTNNALMNMYAQSQNM 157
D++ N L+ MY+ N+
Sbjct: 137 WFDIFVGNTLIAMYSSFGNV 156
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SII QN E L F M +G+ PD + S+L +C L G VH +
Sbjct: 205 WGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLD 264
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDM 159
+LG L + + L++MYA+ ++D+
Sbjct: 265 QLGHPLSVRLSTGLIDMYAKCGSLDI 290
>gi|357167336|ref|XP_003581113.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Brachypodium distachyon]
Length = 687
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR--------CC 81
+F TL P + L S ++ FNL+ D+L LLD + P AW ++I CC
Sbjct: 119 LFDTLHPRNERLWSPMVVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCC 178
Query: 82 TQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ ++ FVRM+ GV P+ F SVL++C + FG SVH C++R G D D
Sbjct: 179 RK------AIGLFVRMLADHGVMPNEFTFDSVLRACVKMGALDFGRSVHGCLLRSGFDTD 232
Query: 141 LYTNNALMNMYAQS 154
+AL+++Y S
Sbjct: 233 KLITSALVDLYCSS 246
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
NL+ I+ K + Q ++F+ + + ++ ++ + + + L L + +K
Sbjct: 299 NLMIKAYGIEGKLEQCQ---RMFEKMPRRNIVTLNSMMSVLLQNGKLEEGLKLFEQIKDE 355
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+ W S+I QN E+L FV M + + FP++L +C + G+ V
Sbjct: 356 RNTITWNSMISGYIQNNHSSEALKLFVTMRRLSIICSPSTFPTLLHACGTVGTIEQGKMV 415
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA + + + + Y AL++MY++
Sbjct: 416 HAHLCKTPFESNGYVGTALVDMYSK 440
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T LL ++ T Q K +HA + KT ++ ++ + L+ +Y+ V D+L
Sbjct: 392 SPSTFPTLLHACGTVGTIEQGKMVHAHLCKTPFESNGYVGTALVDMYSKCGCVSDALDAF 451
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+ +P +W S+I NG ++++ F RM+ + P+ F +L
Sbjct: 452 CCITSP-NVASWTSVINGLAHNGQCLKAIVEFGRMLRHRINPNEITFLGLL 501
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCL 61
S +L +L+++ VS + + HAQI KTL+ P F+ + L+ +Y+ + + + L
Sbjct: 5 SPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLL 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
L +L V W ++I QNG +L F M + P+ FP K+ L
Sbjct: 65 L-SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ VHA ++ G D++ + +MY+++ G ++
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKA------------------GLTEEARKM 165
Query: 182 LDKIPERN 189
D++PERN
Sbjct: 166 FDEMPERN 173
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH + ++ + + L+ Y + V S + + P V+W S+I
Sbjct: 228 GRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKP-NDVSWCSMIVSYV 286
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN ++ F+R G+ P + SVL +C L G+SVH ++ V +++
Sbjct: 287 QNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIF 346
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + +++ D++PERN
Sbjct: 347 VGSALVDMYGKCGSIE------------------DAERAFDEMPERN 375
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
K S+++ KQ+HA K + + F+ +Y+ L ++ + D + P
Sbjct: 115 FKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEM--PER 172
Query: 71 PVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
+A W + + G ++LT F+ G P+ F + L +C R G +H
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLH 232
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
+++ G + D+ N L++ Y +
Sbjct: 233 GFVLQSGFEADVSVANGLIDFYGK 256
>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
Length = 788
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+HA+I K + ++ ++L+ Y + + + L L+ +W +II
Sbjct: 45 GQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKLRVR-NVFSWAAIIGV 103
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ GL+ +L FV M+ ++PD+ V P+V K+C L FG VH + + G+D
Sbjct: 104 KCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDC 163
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ ++L +MY + +D +V D+IPERN
Sbjct: 164 VFVASSLADMYGKCGVLD------------------DARKVFDEIPERN 194
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K +++ + + +H + K+ + F+ S L +Y ++ D+ + D +
Sbjct: 134 NVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEI-PE 192
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG+ E++ M GV P + L + + G+
Sbjct: 193 RNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQS 252
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQG 167
HA + G++LD +++N Y + ++ ++DR G
Sbjct: 253 HALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVG 293
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QNG E++ +M G+ P+ L +C L FG SVH
Sbjct: 468 VSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGY 527
Query: 132 IIRLGV-DLDLYTNNALMNMYAQSQNM-------------DMHIYDRF-QGFGFNGGREA 176
IIR + + +L++MYA+ ++ ++ +Y+ + G E
Sbjct: 528 IIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEE 587
Query: 177 --SVHEVLDKIPERNGNVELSSGLAGCN 202
+++ LD + + N+ ++ L+ CN
Sbjct: 588 AMALYRSLDDMGIKPDNITFTNILSACN 615
>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1198
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T I+L+KN + + K LHA + ++ + + + L+ Y + + + L
Sbjct: 472 SPDTCISLIKNTSGLHS---LKALHASMLRSYLHLNLYFFTNLVAQYTSLGFISHAYSLF 528
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
T P W +IR + +++ + +M+ + P + V K+C L D
Sbjct: 529 ST-SNPTDAFLWNVMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVFKACGCLRDI 587
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
FG+ VH ++ G LDL+ N+L+ MYA+ G E S +V
Sbjct: 588 EFGKQVHDDAVKDGYKLDLFVLNSLITMYARC-----------------GSYELS-RQVF 629
Query: 183 DKIPERNG 190
DK+ +RNG
Sbjct: 630 DKMSDRNG 637
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I TQ L ++SL F +M+ PD SV+++CT+L + +VH
Sbjct: 736 VTWANMIEAYTQVDLPLQSLVLFKQMMLQNACPDSVTLLSVVRACTILASLQHAHAVHGI 795
Query: 132 IIRLG--VDLDLYTNNALMNMYAQ--SQNMDMHIYDRFQ------------GFGFNG-GR 174
+I G + +L A+ ++YA+ S ++DR Q G+G +G GR
Sbjct: 796 VIVTGGFFNSELAVETAVTDLYAKCGSLTYARKVFDRMQNRNIISWSAIISGYGMHGHGR 855
Query: 175 EA 176
EA
Sbjct: 856 EA 857
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H K F+++ L+ +Y S + D + + + W S+I C
Sbjct: 590 GKQVHDDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKM-SDRNGICWNSMIGACL 648
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
E + F +M G G+ D +V++ D G V G +LD Y
Sbjct: 649 ITERYDEGVKLFWQMSGEGIRLDRAALLNVMRCVRTEND---GNGVSRVARDAGFNLDQY 705
Query: 143 TNNALMNMYAQSQNMDM 159
NA + MYA+ +D+
Sbjct: 706 VQNAAIGMYAKCGRLDL 722
>gi|224107421|ref|XP_002314475.1| predicted protein [Populus trichocarpa]
gi|222863515|gb|EEF00646.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I +NG E+L FV MI + + PD F +VL +C+ L G VH C
Sbjct: 170 VSWTSMITGYARNGYGEEALDFFVGMIRNCLLPDDFTFGAVLHACSSLAILGHGRMVHGC 229
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G +Y N L+NMYA+ +++
Sbjct: 230 VIRHGFHAHVYIGNGLVNMYAKCGDLE 256
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LLF Y N + + ++ VAW +I Q G + L F M S P
Sbjct: 12 LLFAYTNSGQFDAAASVFKSMPKKVD-VAWNIMISGLGQYGEIELCLEMFKEMRESLCEP 70
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D + +++ + T ++ +G +HA +I+ G + NN++++ YA+
Sbjct: 71 DQWTYSALISAFTESLELVYGCMMHAVVIKTGWSSAMEANNSILSFYAK 119
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I C +QN E+L F M +G+ PD +++ +C L G+ +H
Sbjct: 139 ISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLY 198
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +G DLD+Y +AL++MYA+ ++D
Sbjct: 199 AMEMGFDLDVYIGSALIDMYAKCGSLD 225
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M+ + V P F S++K+C+L+ + FGE+VH I + G D ++ AL++ Y
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYG---- 56
Query: 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
N G+ V D++ ER+
Sbjct: 57 --------------NAGKIVEARRVFDEMSERD 75
>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Brachypodium distachyon]
Length = 697
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S TL++++ +K + HA + + L++ +L Y V +
Sbjct: 199 MPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARR 258
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + + T V W ++ Q+G + E+LT + +M+ +G+ P+ SV+++C+L
Sbjct: 259 LFEGM-TEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQACSLAP 317
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
D G VH +++G +L++ AL++MY
Sbjct: 318 DIEEGRRVHDIAVKIGCELEMTVATALVDMY 348
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +I TQNGL ES+ F M+ G +PD VL +C+ R +H
Sbjct: 370 VAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGY 429
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G ++ AL+++Y++ N+
Sbjct: 430 LVITGFCDKIFVAAALVDLYSKCGNL 455
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDT 64
TL LLK + + + LHA ++ + F+ + L+ +Y + S+ +
Sbjct: 101 TLSLLLKACAMLPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNA 160
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR-MIGSGVYPDHNVFPSVLKSCTLLVDFR 123
P V S++ QN + E+L F R ++G G P SV+ + L D
Sbjct: 161 FSEP-DMVLRTSMVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVL 219
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMY 151
G++ HA +IR + DL NA++ Y
Sbjct: 220 NGQACHAFVIRNNFEYDLVLVNAILGFY 247
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSL 59
M + L LL+ T A +LHA + ++ +S L S +L Y H
Sbjct: 1 MRGWQPLQKLLEAAADSSTPVAAARLHAHLLRSGHLHSSHHLTSHVLASYPTGLARH--- 57
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L D + P P +A +++R + ++L + V PD +LK+C +L
Sbjct: 58 -LFDEIPVPTPRLA-NALLRAHVRARQWCDALLLIPCL---RVRPDAFTLSLLLKACAML 112
Query: 120 VDFRFGESVHACIIR-LGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
G ++HA IR D + AL++MYA+ + M ++ Y+ F
Sbjct: 113 PALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAF 161
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++ K+LH+QI +T + + L+ +Y + ++ + + + V+W + I C
Sbjct: 370 NRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEK-NAVSWNAFIAC 428
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C ++G E+ F +M V PDH F ++L SCT DF G +H I + G+ +
Sbjct: 429 CCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSN 488
Query: 141 LYTNNALMNMYAQ 153
NAL++MY +
Sbjct: 489 NLVANALISMYGR 501
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
L+ V K+ ++ K++H + EP+ +L + L+ +Y+ + D+ + +++
Sbjct: 58 LQECVQAKSLAEGKKVHDHMRSAQFEPDI-YLNNMLISMYSKCGSIEDANNVFQSMEDK- 115
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I +G E++ F +M G+ P+ N F S+L +C + FGE +H
Sbjct: 116 DVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIH 175
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ I + G + D+ + AL+NMY + ++++
Sbjct: 176 SHITKAGYESDVNVSTALINMYCKCGSLEL 205
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q+G E+ F ++I SG P+ F S+L +CT D G +HA
Sbjct: 219 VSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAY 278
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I + G++ ++ NAL++MYA+
Sbjct: 279 IKQAGLEQEVLVGNALISMYAR 300
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 24/199 (12%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S +++ NP ++ Q +LHA I + + + L+ +Y + ++ +
Sbjct: 255 SFASILGACTNPNDLE---QGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVF 311
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L++P V+W ++I + G + E+ F M G PD + S+L C D
Sbjct: 312 DNLRSP-NRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADL 369
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G+ +H+ I+R + D+ AL++MYA+ +++ +V
Sbjct: 370 NRGKELHSQIVRTAWEADVTVATALISMYAKCGSLE------------------EARKVF 411
Query: 183 DKIPERNGNVELSSGLAGC 201
+++PE+N V ++ +A C
Sbjct: 412 NQMPEKNA-VSWNAFIACC 429
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T IN+L+ +++ +++H + K LE + R L + L+ +Y+ + D+ +
Sbjct: 557 TFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTT-LIKMYSKCGSLRDAYSVFKN 615
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V W +++ + ++L F +M GV PD + SVL +C L
Sbjct: 616 VQEK-DVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEH 674
Query: 125 GESVHACIIRLGVDLD 140
G+ H + ++ D
Sbjct: 675 GKKFHTQLKEAAMETD 690
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I LL + S + + + +H +I + ++ + + L+ +Y + D+ + +
Sbjct: 456 TFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRI 515
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +W ++I Q+G + F++ G D F +VL++ L D G
Sbjct: 516 RRRDLG-SWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAG 574
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H + + G++ D+ L+ MY++
Sbjct: 575 RKIHGLVEKAGLEKDIRILTTLIKMYSK 602
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LLK VS + + +++HA + +T S F+ LL Y LV + D +
Sbjct: 93 TFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEM 152
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V W IIR ++L F M G+ PD +V+ +C LL D
Sbjct: 153 RQPGL-VLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVA 211
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+++H I + G+++D + ++ L++ Y + ++D + Y FQ
Sbjct: 212 KAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD-YAYRFFQ 251
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 74 WKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
W ++IR +NGL+ L +++ + +G+ P+ + F +LK+ + + GE VHA
Sbjct: 57 WNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHAS 116
Query: 132 IIRLGVDLDLYTNNALMNMY 151
++R G + + AL+ Y
Sbjct: 117 VVRTGFACSEFVSGALLGFY 136
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + G E+LT F M SGV P+ S L +C G +HA
Sbjct: 290 VSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAY 349
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + ++ D +++L++MY++ ++D
Sbjct: 350 VDKNDMNRDGSLDSSLIDMYSKCGDID 376
>gi|302803089|ref|XP_002983298.1| hypothetical protein SELMODRAFT_10719 [Selaginella moellendorffii]
gi|300148983|gb|EFJ15640.1| hypothetical protein SELMODRAFT_10719 [Selaginella moellendorffii]
Length = 559
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
SQ K++HA I + +S L +RL+ +Y ++ + D ++ P +W ++I
Sbjct: 12 SQGKRIHAHIHHSGLAHSTHLQNRLIQMYGKCRRPREAQLVFDHIRAPDAD-SWMNLIAA 70
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++G E+L + M S P+ V+PSV+K+C++L D G +H II+ LD
Sbjct: 71 FVRSGAEREALHLYAAMDVSP--PNPFVYPSVIKACSVLRDLAQGREIHRRIIQHQHCLD 128
Query: 141 LYTNNALMNMYAQSQNMD 158
T+ AL++MYA+ +++
Sbjct: 129 AVTSTALVDMYAKCGDLE 146
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+++K ++ +Q +++H +I + + L+ +Y + + + +++
Sbjct: 99 SVIKACSVLRDLAQGREIHRRIIQHQHCLDAVTSTALVDMYAKCGDLETAATIFSSIQEK 158
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W ++I +N ++ F RM G+ PD + S+L +C+ + G ++
Sbjct: 159 TL-VSWAAMISGYVRNERYSRAIGIFHRMNLEGLEPDDFILSSLLLACSKIQALDQGRTI 217
Query: 129 HACIIRLG--VDLDLYTNNALMNMYA 152
HA I+ +L ALM MYA
Sbjct: 218 HARILSSSSPAATNLVVETALMVMYA 243
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 22/191 (11%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR---FLISRLLFIYNNFNLVHDS 58
T KT+ N IK S K+L + ++ N+ FL+++ + + F+ + +
Sbjct: 4 TYAKTITNFNHLAQQIKKCSMVKELESVYASMIKANANQDCFLMNQFIAACSIFHRIDYA 63
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ ++ P V + ++IR Q V++L C++ M+ + V P F S++K+C+L
Sbjct: 64 ILAFTHMQEPNVFV-YNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSL 122
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
+ + FGE+VH I + G D ++ AL++ Y N G+
Sbjct: 123 VSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYG------------------NAGKIVEA 164
Query: 179 HEVLDKIPERN 189
V D++ ER+
Sbjct: 165 RRVFDEMSERD 175
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ C NG+ +S+ FVRM + D+ F +LK+C+ + D+ G VH
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCL 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I++G + D+ T +AL++MY++ + +D D F+ V ++PERN
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLD----DAFR--------------VFREMPERN 203
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
CL+ V+W +II QN +V++L+ FV M+ S + PD + SV+K+C
Sbjct: 395 CLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQ 454
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+G +H II+ G+ LD + +AL++MY +
Sbjct: 455 QALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGK 488
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H +I K+ F+ S L+ +Y ++ ++ + L+ V+W SII +
Sbjct: 462 EIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTT-VSWNSIISGFSSQ 520
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+ F +M+ G+ PD+ + +VL C + G+ +HA I++L + D+Y
Sbjct: 521 KQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIA 580
Query: 145 NALMNMYAQSQNM 157
+ L++MY++ NM
Sbjct: 581 STLVDMYSKCGNM 593
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I QN +E L F M+ G+ + + SV +SC L F+ G +H
Sbjct: 205 VCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGH 264
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D A ++MYA+ + M
Sbjct: 265 ALKSDFAYDSIIGTATLDMYAKCERM 290
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++ N +I+ KQ+HAQI K + ++ S L+ +Y+ + DS + +
Sbjct: 547 TVLDVCANMATIEL---GKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFE-- 601
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V W ++I +GL +++ F M V P+H +F SVL++C
Sbjct: 602 KAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACA 654
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ LL + S + + KQ+HA+I F+ ++L+ Y + + + + +L
Sbjct: 9 SFATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIF-SL 67
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P + S+IR + L +SL+ F +M+ + D P+VLKSC+ L R G
Sbjct: 68 TNRRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSALRLG 127
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
VH ++ G+ DL T NAL++MY++ ++ A+ +V D++
Sbjct: 128 RQVHCAVVANGLASDLATINALISMYSKCGDL------------------AAARKVFDRM 169
Query: 186 PERNGNVELSSGLAG 200
ERN V S+ +AG
Sbjct: 170 TERN-LVTWSAMMAG 183
>gi|357125803|ref|XP_003564579.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Brachypodium distachyon]
Length = 456
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C+Q GL E++ F+ M GV P+ + FP VL S G SVHA
Sbjct: 139 VSWNAMIGGCSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVLTSVANAGALGVGRSVHAS 198
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI--YDRFQ------------GFGFNG-GREA 176
I+L LD+Y N+L++ YA+ +++ + + + + G+ NG G+EA
Sbjct: 199 AIKLLGKLDVYIGNSLVSCYARCGSLEDSVLAFRKMKQKNLVTWNALICGYAQNGRGQEA 258
Query: 177 -SVHEVLDKIPERNGNVELSSGLAGCN 202
+E + + + NV L L GCN
Sbjct: 259 LGAYETMRAMGLKADNVTLLGLLFGCN 285
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VA + I T+ +++T F R++ G+ P+ F +VL+S T L D R G +HAC
Sbjct: 7 VAATAAIGALTRGSRHRDAVTLFSRVLSDGIPPNEFTFGTVLRSATALRDLRVGTQLHAC 66
Query: 132 IIRLGVDLDLYTNNALMNMY--------AQSQNMDMH------IYDRFQGFGFNGGREAS 177
+ + G+ +++ +AL++ Y AQS D H GF NG +
Sbjct: 67 VAKFGLCSNVFVGSALVDHYAKMGAMAEAQSALGDTHEPNVVSYTALIAGFLKNGMFD-D 125
Query: 178 VHEVLDKIPERNGNVELSSGLAGCNK 203
H + +PERN V ++ + GC++
Sbjct: 126 AHRLFQCMPERN-VVSWNAMIGGCSQ 150
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q Q+HA +FK ++ + L+ Y N + DSL + K V W +++
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG-KLHMNVVIWTALVTGY 263
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
N ++L F M+ GV P+ + F S L SC L +G +H ++LG++ D+
Sbjct: 264 GLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDV 323
Query: 142 YTNNALMNMYAQSQNMD 158
+ N+L+ MY + N++
Sbjct: 324 FVGNSLIVMYYRCGNLN 340
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV--YPDHNVFPSVLKSCTLLVDFRFGESVH 129
++W S+I Q+G E+L F +M+G GV P + + V+ +C G +H
Sbjct: 151 ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIH 210
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
A + +LG D Y + AL+ YA + M+
Sbjct: 211 AHVFKLGYSFDAYISAALITFYANCKQME 239
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ + L + ++ +++H K F+ + L+ +Y ++D + + +
Sbjct: 290 SFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI 349
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W S+I C Q+G + +L F +M+ S V PD F +L +C+
Sbjct: 350 -SKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS 400
>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL + K+ Q+HA I K+ + + + L+ +Y+ + L+D P
Sbjct: 52 LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEP- 110
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I QNGL +L F M GV + F SVLK+C+++ D R G+ VH
Sbjct: 111 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 170
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ G + D++ N L+ MYA+ D F + R + D+IPERN
Sbjct: 171 GVVVVSGFEGDVFVANTLVVMYAKC--------DEF----LDSKR------LFDEIPERN 212
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR N L ++L F M G G+ PDH +P VLK+ + D G +HA ++R+G
Sbjct: 1097 MIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG 1156
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSS 196
+DL+++ N L++MY + G VLD++P R+ V +S
Sbjct: 1157 LDLNVFVGNGLISMYGKC------------------GCLVEACRVLDZMPCRD-VVSWNS 1197
Query: 197 GLAGCNK 203
+AGC +
Sbjct: 1198 LVAGCAR 1204
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I N + E++ F++M V PD SVL +C L G +H
Sbjct: 1261 VSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEY 1320
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNG-GREA 176
++R + +L NAL++MYA+ ++ ++D+ + +G NG GR+A
Sbjct: 1321 VVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDA 1380
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q Q+HA +FK ++ + L+ Y N + DSL + K V W +++
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG-KLHMNVVIWTALVTGY 279
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
N ++L F M+ GV P+ + F S L SC L +G +H ++LG++ D+
Sbjct: 280 GLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDV 339
Query: 142 YTNNALMNMYAQSQNMD 158
+ N+L+ MY + N++
Sbjct: 340 FVGNSLIVMYYRCGNLN 356
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV--YPDHNVFPSVLKSCTLLVDFRFGESVH 129
++W S+I Q+G E+L F +M+G GV P + + V+ +C G +H
Sbjct: 167 ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIH 226
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
A + +LG D Y + AL+ YA + M+
Sbjct: 227 AHVFKLGYSFDAYISAALITFYANCKQME 255
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ + L + ++ +++H K F+ + L+ +Y ++D + + +
Sbjct: 306 SFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI 365
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W S+I C Q+G + +L F +M+ S V PD F +L +C+
Sbjct: 366 -SKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS 416
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 13/157 (8%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN------LVH 56
S T+ NLLK K H+ + N F+++ L+ +Y+N LV
Sbjct: 245 SPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVF 304
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
DS+C ++W ++I QNG++ ES F R++ SG D S+++ C
Sbjct: 305 DSMC-------SRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGC 357
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ D G +H+CIIR ++ L + A+++MY++
Sbjct: 358 SQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSK 394
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W SII Q GL ES+ F+ MIG G+ P ++LK+C + G H+
Sbjct: 212 VCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSY 271
Query: 132 IIRLGVDLDLYTNNALMNMYA 152
++ LG+ D++ +L++MY+
Sbjct: 272 VLALGMGNDVFVLTSLVDMYS 292
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ TL++L++ + LH+ I + + L + ++ +Y+ + + +
Sbjct: 347 SGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFG 406
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ + W +++ +QNG ++L F +M V + S++ C L
Sbjct: 407 RMGKK-NVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLT 465
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQ---------NMDMHIYD------RFQGF 168
G +VHA IR G D +AL++MYA+ N + H+ D G+
Sbjct: 466 KGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGY 525
Query: 169 GFNG-GREA 176
G +G GR A
Sbjct: 526 GMHGHGRYA 534
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K +HAQI K FL ++L+ +Y++ + + + D P V ++I
Sbjct: 62 HVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVC-NAMIAGF 120
Query: 82 TQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+N +E F RM+GS + + LK+CT L+D G + +R G L
Sbjct: 121 LRNQQHMEVPRLF-RMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLH 179
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LY ++++N F G A +V D +PE++
Sbjct: 180 LYVGSSMVN------------------FLVKRGYLADAQKVFDGMPEKD 210
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H+ + L N F+ S L+ IY+ V +L + + + T V W S+I
Sbjct: 336 GKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMM-TERDVVCWNSMISGLA 394
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ +M +G++P + + S++ C L G +HA +++ G D ++Y
Sbjct: 395 IHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVY 454
Query: 143 TNNALMNMYAQSQNMD 158
+L++MYA+S NMD
Sbjct: 455 VGCSLIDMYAKSGNMD 470
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H K +F+ + LL +Y V D++ L D +
Sbjct: 43 TLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM 102
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-------- 117
+P V++ +++ Q G + ++L F RM +G+ D SVL +C
Sbjct: 103 PSP-NEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYN 161
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ + +S+HA ++R G D + N+L+++YA+ MD I
Sbjct: 162 VARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 205
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P P V W +++ Q L E++ F RM V PD +L SC+ L +F
Sbjct: 276 KIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFEL 335
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH+ +RL + D++ + L+++Y++
Sbjct: 336 GKQVHSASVRLLLHNDMFVASGLIDIYSK 364
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I ++G E+L + M+ G+ P + SVL +C + G H
Sbjct: 7 VSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++G+D + N L+ MY +
Sbjct: 67 AVKVGLDGHQFVENGLLGMYTK 88
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S ++INL SI Q +Q+HAQ+ K + ++ L+ +Y + D+
Sbjct: 419 SSYASMINLCARLSSIP---QGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLF 475
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + VAW +I QNG +++ F M+ + PD F +VL C+
Sbjct: 476 FNCMIVK-NLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCS 530
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR N L ++L F M G G+ PDH +P VLK+ + D G +HA ++R+G
Sbjct: 108 MIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG 167
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSS 196
+DL+++ N L++MY + G VLD++P R+ V +S
Sbjct: 168 LDLNVFVGNGLISMYGKC------------------GCLVEACRVLDQMPCRD-VVSWNS 208
Query: 197 GLAGCNK 203
+AGC +
Sbjct: 209 LVAGCAR 215
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I N + E++ F++M V PD SVL +C L G +H
Sbjct: 272 VSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNG-GREA 176
++R + +L NAL++MYA+ ++ ++D+ + +G NG GR+A
Sbjct: 332 VVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDA 391
>gi|302764952|ref|XP_002965897.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
gi|300166711|gb|EFJ33317.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
Length = 318
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T + T +L+ K Q K++H+ I + + R L + L+ +Y + D+ +
Sbjct: 5 TDSATYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRM 64
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + + W S+I ++ G +L F RM G V PD+ F +VL C +
Sbjct: 65 FDEM-VSRDAILWTSMISAYSERGHYKMALKLFQRMQGESVKPDNVTFVTVLNCCGKMSA 123
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ G+ +H+ + G + DL AL+NMY + ++ +++ QG
Sbjct: 124 LQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEIQG 171
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L + + K +H+Q+ N + + LL +Y + D+ + + +
Sbjct: 110 TFVTVLNCCGKMSALQEGKLIHSQLTGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEI 169
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + W +++ Q+ E+L + +M + P + F +V+ +C G
Sbjct: 170 QGK-DIITWNAMLSVYVQHSAYEEALELYRKM---ELTPSVSTFVTVINACAGATALEDG 225
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHA + G++ + ++AL+NMY + +++
Sbjct: 226 RQVHAVVTARGLETEDAVSSALLNMYGKCGSLE 258
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVHDSLCLLDTLKTPA 69
S+++ + +++H + K+ +L+S L+ +Y N + +S+ D+++ A
Sbjct: 223 SLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNA 282
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W +I NG ++L F++M+ G+ PD++ S+ C+ +D FG+ +H
Sbjct: 283 --VIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIH 340
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
I + G+ ++ AL++MY + +M + I+ R Q
Sbjct: 341 GLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQ 379
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +Q+H + K + +++ LL +Y +V D++ + + + V+W ++I
Sbjct: 127 KGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMP-EVDLVSWNTMISGF 185
Query: 82 TQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ SL F M+ G+YP+ S + SC+ L G +H +++ G+D++
Sbjct: 186 QKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVE 245
Query: 141 LYTNNALMNMYAQ 153
Y ++L+ MY +
Sbjct: 246 EYLVSSLIEMYMK 258
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H IFK N+ + + LL +Y + L + + + W ++I C
Sbjct: 336 GKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQN-HNLIMWSAVISNCA 394
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G ++L F D + +VL++C+ L G +H ++G D++
Sbjct: 395 QSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVF 454
Query: 143 TNNALMNMYAQSQNM 157
+AL+++YA+ ++M
Sbjct: 455 VGSALVDLYAKCRDM 469
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+IR T++G +++ +++M+ GV + FP ++K+ L D G +H +++L
Sbjct: 79 VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138
Query: 136 GVDLDLYTNNALMNMYAQ 153
GV D+ N+L+ MY +
Sbjct: 139 GVLDDVSVVNSLLTMYWK 156
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 19/189 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ + L+ +L+ S+ K + Q+H K + F+ S L+ +Y + S
Sbjct: 415 LADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKK 474
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ L + V+W ++I Q+ E+L F M + P+ +L C L
Sbjct: 475 VFLRL-SQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLS 533
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ VH +IR G+ + +N+L+ YA+ +++ +Y
Sbjct: 534 VMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLY------------------ 575
Query: 181 VLDKIPERN 189
+K+PERN
Sbjct: 576 TFEKMPERN 584
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+ +L + + K++H + + ++ + + L+ Y ++ SL +
Sbjct: 519 TVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFE 578
Query: 64 TLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K P V+W SII + E + F +M+ SG+ PDH F ++L +C+
Sbjct: 579 --KMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACS 631
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H+ + L N F+ S L+ IY+ V +L + + + T V W S+I
Sbjct: 437 GKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMM-TERDVVCWNSMISGLA 495
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ L E+ +M +G++P + + S++ C L G +HA +++ G D ++Y
Sbjct: 496 IHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVY 555
Query: 143 TNNALMNMYAQSQNMD 158
+L++MYA+S NMD
Sbjct: 556 VGCSLIDMYAKSGNMD 571
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L ++ ++ H K +F+ + LL +Y V D++ L D +
Sbjct: 144 TLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM 203
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT-------- 117
+P V++ +++ Q G + ++L F RM +G+ D SVL +C
Sbjct: 204 PSP-NEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYN 262
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ + +S+HA ++R G D + N+L+++YA+ MD I
Sbjct: 263 VARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 306
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P P V W +++ Q L E++ F RM V PD +L SC+ L +F
Sbjct: 377 KIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFEL 436
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH+ +RL + D++ + L+++Y++
Sbjct: 437 GKQVHSASVRLLLHNDMFVASGLIDIYSK 465
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 30/165 (18%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---------------------NFNLVHD 57
++S AK HA++ FL++RL+ +Y+ ++N
Sbjct: 25 SRSNAKAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAIS 84
Query: 58 SLCLLDTLKTPAP---------PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
+ C L V+W ++I ++G E+L + M+ G+ P +
Sbjct: 85 AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFT 144
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SVL +C + G H +++G+D + N L+ MY +
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTK 189
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S ++INL SI Q +Q+HAQ+ K + ++ L+ +Y + D+
Sbjct: 520 SSYASMINLCARLSSIP---QGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLF 576
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + VAW +I QNG +++ F M+ + PD F +VL C+
Sbjct: 577 FNCMIVK-NLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCS 631
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLI--SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+HA++ K N R LI S +++ Y + + C+ D + V+W ++I
Sbjct: 60 GRQVHARVVK---GNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRM-VERDVVSWTTMITA 115
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C+Q G E+ F +M+ G P+ +LK+C +FG+ +H I++ D
Sbjct: 116 CSQQGRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALKFGKQIHGAIVKKMYKDD 175
Query: 141 LYTNNALMNMYAQ 153
++ +L++MYA+
Sbjct: 176 VFVGTSLVDMYAK 188
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L+ I +++HAQI K ++ +L S L++ Y + +L +
Sbjct: 244 TIVSMLRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQM 303
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II G E+L M+ GV P+ + S LK+C L G
Sbjct: 304 PFR-DVVSWTAIISGHACLGHESEALEFLKEMMEEGVEPNSFTYSSALKACANLETVLQG 362
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H+ + +++ +AL++MYA+ G + +V D +
Sbjct: 363 KLIHSSANKTPASSNVFVGSALIHMYARC------------------GYVSEAIQVFDSM 404
Query: 186 PERN 189
PERN
Sbjct: 405 PERN 408
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK K KQ+H I K + + F+ + L+ +Y V DS + + +
Sbjct: 143 TASGILKACGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGM 202
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W SII + GL E++ F M+ V ++ S+L++C L+ G
Sbjct: 203 RRR-NTVTWTSIIAGYARKGLGEEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAG 261
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VHA II+ + Y + L+ Y +
Sbjct: 262 REVHAQIIKNCSQSNEYLGSTLVWFYCK 289
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LK +++T Q K +H+ KT ++ F+ S L+ +Y V +++ + D++
Sbjct: 345 TYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALIHMYARCGYVSEAIQVFDSM 404
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W+++I +NGL E+L RM G+ D + VL +C +++ G
Sbjct: 405 P-ERNLVTWRAMIMGYVRNGLCQEALKLMYRMQAEGIQVDDYISAKVLGACG-EIEWDAG 462
Query: 126 ESVHACI 132
S C+
Sbjct: 463 HSSEYCL 469
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + GL E+L+ F + I GV P+ F VL C+ +DF G VHA
Sbjct: 7 VSWTAMINGYFKFGLDDEALSYFSQAIKDGVVPNSKTFVCVLNLCSRRLDFELGRQVHAR 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
+++ G +L ++A++ Y Q ++ ++DR
Sbjct: 67 VVK-GNWRNLIVDSAVVYFYVQCGDLKSAFCVFDR 100
>gi|413916233|gb|AFW56165.1| hypothetical protein ZEAMMB73_705806 [Zea mays]
Length = 597
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCT 82
+Q+HAQ + + L+ +Y V D+ + D + PA V+W +++
Sbjct: 130 RQVHAQAEIAGCARDTVVATALVDMYGKSGSVEDARAVFDAMAAPARNAVSWGAMLAVYV 189
Query: 83 QNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QN L E++ F +R G G+ P+H + SV+ +C + G VH ++RLG +
Sbjct: 190 QNALGNEAVELFAELRTCGGGMAPNHFMLASVVSACAGMARLGIGRCVHGAVLRLGYGNN 249
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ 166
+ AL++MY++ + ++DR +
Sbjct: 250 DVISVALVDMYSKCGRYEYSRKVFDRIE 277
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFK---TLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
T IN L S + K++HAQI LE N L + L+ +Y+N + D+
Sbjct: 81 TFINTLGACSSAEFLETGKKIHAQIVAGEVELELN---LANSLISMYSNCGSLVDAKRFF 137
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + V+W II + +G E++ F M G PD F SV +C++L D
Sbjct: 138 DGMNRR-NVVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFSACSILEDL 196
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +HA + LD+ N L+NMYA+ ++D
Sbjct: 197 SQGRRIHARFCDGRMKLDVSIGNTLLNMYARCGSLD 232
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T I +L + QA+++H+ + + LE + + L+ Y + D+ + +
Sbjct: 280 TFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFE 339
Query: 64 TLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++ T V W SII C G E+L F RM G+ + F +VL +C L
Sbjct: 340 SMATAERNVVTWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGST 399
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R +H I+ G D D N L+NM+ +
Sbjct: 400 REARYLHGLIVSGGYDRDTVVCNGLINMFGK 430
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +NLL + K + + + I + P+SR L + L+ Y + + + L
Sbjct: 520 TFVNLLHACSRMGAKKEGWTIRSHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENL 579
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
AW + I Q+G ESL F RM+ G+ PD F +VL SC+
Sbjct: 580 -AERDSAAWNAAIGVSGQHGFYDESLRLFERMVLEGMEPDEITFTNVLFSCS 630
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87
IF+ + + + +L Y + ++ L ++ + +AW +++ Q G
Sbjct: 440 IFERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQMERISYKDVMAWTTMVAAYAQAGYA 499
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
E+L + RM GV PD F ++L +C+ + + G ++ + I+ G+ N L
Sbjct: 500 DEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKKEGWTIRSHILERGLPSSRVLGNGL 559
Query: 148 MNMYA 152
+ Y
Sbjct: 560 VCFYG 564
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+++H+++ +T + L + L+ +Y + ++ D + +W II ++
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGI-AEKNVFSWSIIIGLYSR 59
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ L E++ F M V P+ F + L +C+ G+ +HA I+ V+L+L
Sbjct: 60 HRLSREAIELFHAM---DVRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNL 116
Query: 144 NNALMNMYA 152
N+L++MY+
Sbjct: 117 ANSLISMYS 125
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK+LHAQI K + + LL Y L+ D+L L D L PVAW S++ C
Sbjct: 22 AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPR-RDPVAWASLLTACN 80
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL--VDFRFGESVHACIIRLGVDLD 140
+ +L+ ++ +G +PDH VF S++K+C L + + G+ VHA D
Sbjct: 81 LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140
Query: 141 LYTNNALMNMYAQ 153
++L++MYA+
Sbjct: 141 DVVKSSLIDMYAK 153
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL------VHDSLCLLDTL---------- 65
Q KQ+HA+ F + + + S L+ +Y F L V DS+ L+++
Sbjct: 124 QGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYA 183
Query: 66 -------------KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFP 110
+TP + AW ++I Q+G V++ FV M G+ D V
Sbjct: 184 RSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLS 243
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
SV+ +C L + G+ +H +I LG + L+ +NAL++MYA+ ++
Sbjct: 244 SVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDL 290
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
++F +E + LL +Y + ++ + +LD + PA V+W ++I Q G
Sbjct: 303 RVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAM--PARNEVSWGTLIARHEQKGDT 360
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
E+L + +M+ G P+ + F SVL +C L D R G +HA +++G +L+ +++L
Sbjct: 361 AEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420
Query: 148 MNMYAQSQN--MDMHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
++MY + + +++ G+ +N G+ + +K+P RN
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWN-GKMVEAEGLFNKMPARN 475
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA V+W ++I +N ++L F M+ SG P SVL +C L
Sbjct: 470 KMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEM 529
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G VHA I++LG++ +++ AL +MYA+S ++D S V +
Sbjct: 530 GRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLD------------------SSRRVFYQ 571
Query: 185 IPERNGNVELSSGLAGC--NKFEKRVVSAGHD 214
+PE+N N+ ++ + G N F + +S D
Sbjct: 572 MPEKN-NITWTAMVQGLAENGFAEESISLFED 602
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W ++++ +NG ES++ F MI +G+ P+ + F ++L +C+
Sbjct: 578 ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK +I ++ +++ + K + ++ + ++ Y + + D+ + D +
Sbjct: 766 LLKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRT 825
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W +++ C N L +S FV+M GSG PD +L +C+ L + FG VH
Sbjct: 826 V-VSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVH 884
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
+ +I G+ ++ AL++MYA+
Sbjct: 885 SQVIEKGMVVNCRLGTALVDMYAK 908
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 53 NLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
NL H + L + K+ +W +IR E++ ++ M G+ PD FP +
Sbjct: 709 NLNHARVLLSGSEKSEVS--SWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPIL 766
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
LK+C + F G + +++ G+D ++Y N +++ Y + +
Sbjct: 767 LKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRI 811
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I+L+ S ++ +Q +++H I + L + +L +Y + D+ + D
Sbjct: 65 RTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDF 124
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V++ S+I +QNG E++T +++M+ + + PD F S++K+C D
Sbjct: 125 MP-ERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVL 183
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA +I+L L NAL+ MY + M
Sbjct: 184 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQM 216
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRC 80
KQLHAQ+ K LE +S + L+ +Y FN + D+ + + PA ++W SII
Sbjct: 184 GKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASKVFYGI--PAKDLISWSSIIAG 240
Query: 81 CTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+Q G E+L+ M+ GV+ P+ +F S LK+C+ L+ +G +H I+L +
Sbjct: 241 FSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTG 300
Query: 140 DLYTNNALMNMYAQSQNMD 158
+ +L +MYA+ +D
Sbjct: 301 NAIAGCSLCDMYARCGFLD 319
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++L+ P+++ Q Q+H+ I K + + LL +Y + ++ L
Sbjct: 370 SLRSLLCAQTKPMAL---CQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLF 426
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + A V+W +I+ C Q+ VE L F M+ S PDH ++L+ C +
Sbjct: 427 EDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 486
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ G VH + G+ L+ + N L++MYA+
Sbjct: 487 KLGSQVHCYSWKTGLVLEQFIKNGLIDMYAK 517
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ NLL+ V I + Q+H +KT +F+ + L+ +Y + + + D++
Sbjct: 472 TMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSM 531
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I Q+G E+L F M SG+ P+H F VL +C+
Sbjct: 532 DN-GDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACS 582
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+W II NG E+++ F M SG PD S+L + T + G +H+
Sbjct: 334 ASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSF 393
Query: 132 IIRLGVDLDLYTNNALMNMY 151
II+ G DL N+L+ MY
Sbjct: 394 IIKCGFLADLSVCNSLLTMY 413
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++ ++ S +QLHA K + F+ L+ +Y+ + D+ + + +
Sbjct: 78 TFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEM 137
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +II +G E+L + M SGV DH F +++ C L
Sbjct: 138 PEKTT-VGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHA 196
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
+ HA +IR G D+ N AL++ Y++ ++ H++D+ G+G N
Sbjct: 197 KQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYG-N 255
Query: 172 GGREASVHEVLDKIPERNGN 191
GR + E+ +++ + N
Sbjct: 256 HGRGSEAVELFEQMIQERMN 275
>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I +NG E+L FV M + PD F +VL +C+ L G VH C
Sbjct: 301 VSWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGC 360
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
IR G LY N L+NMYA+ ++D I
Sbjct: 361 AIRNGFSTYLYVGNGLVNMYAKCGDLDGSI 390
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I +Q G E+L+ F +M + PDH F + L +C F FG +HA
Sbjct: 37 VAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAGSFPFGTKIHAL 96
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I LG L NN+L++MY +
Sbjct: 97 VIILGYHSSLPVNNSLIDMYGK 118
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 28 AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLL 87
Q+FK + + LLF Y N ++ + + L +AW ++I + G +
Sbjct: 126 GQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFN-LMPRKFEIAWNTMIAGLGRYGEI 184
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
L F M S + PD + +++ +CT ++F G +H +IR G + N++
Sbjct: 185 ELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSI 244
Query: 148 MNMYAQ 153
+++YA+
Sbjct: 245 LSLYAK 250
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSLCLLDTLK 66
NLL K+ + KQLHA + IS++L +N ++ S + L
Sbjct: 16 NLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLS 75
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+P +W +IIR + + ++SL+ F++M+ GV PD+ +P ++K+ L++ G
Sbjct: 76 SPTI-FSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGV 134
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQN--MDMHIYDRFQ 166
SVHA II+ G + D + N+L++MYA N ++D Q
Sbjct: 135 SVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQ 176
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D+L +L+ + P+P V W ++R + G L ++ RM+ +G PDH P LK+C
Sbjct: 101 DALSVLERV-VPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKAC 159
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
L +R G + H I G + +++ NAL+ MY++S +++
Sbjct: 160 GELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLE 201
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 64/233 (27%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++N+L S+K Q K++H+ + F+ + L+ Y + D++ + + +
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320
Query: 66 K----------------------------------TPAPPVAWKSIIRCCTQNGLLVESL 91
+ P + W ++I Q G E+L
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA-----CIIRL-------GVDL 139
F +MI G P+ S+L +C L G HA C++ L G
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNV 192
DL +NAL++MY++ ++ F R + + IP R NV
Sbjct: 441 DLVVHNALIDMYSKCRS-------------FKAAR-----TIFNSIPRRERNV 475
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +++L + + ++L+ I K F+ + L+ ++ + D+ + D
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN 271
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L T V W S+I ++G ++ F RM GV PD F S+L++C
Sbjct: 272 LPT-RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
G+ VHA + +G D ++Y A+++MY + +M+ + ++D +G
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++LL+ + Q K++HA++ + ++ + +L +Y + D+L + D +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I Q+G + E+ F +MI SG+ P+ F S+L +C+ + G
Sbjct: 374 KG-RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ + II G D AL++MYA+ G H V +KI
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKC------------------GSLKDAHRVFEKI 474
Query: 186 PERN 189
++N
Sbjct: 475 SKQN 478
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L S + +Q+ I + + + + LL +Y + D+ + + +
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ VAW ++I Q+ +L F ++ G+ P+ + F S+L C G
Sbjct: 475 -SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ VH I++ G++ DL+ +NAL++M+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMF 559
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T LL+ + K ++++ I K+ F+ + L+ +Y + + D
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDD 170
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ +W ++ Q+GL E+ +M+ V PD F S+L +C +
Sbjct: 171 MREK-DVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMY 151
G ++ I++ G D DL+ AL+NM+
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMH 256
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II Q+G + F M SG+ PD F +L +C G +HA
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I D D+ L++MY + +++ H+V K+P++N
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIE------------------DAHQVFHKLPKKN 680
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +++L + + ++L+ I K F+ + L+ ++ + D+ + D
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN 271
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L T V W S+I ++G ++ F RM GV PD F S+L++C
Sbjct: 272 LPT-RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
G+ VHA + +G D ++Y A+++MY + +M+ + ++D +G
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++LL+ + Q K++HA++ + ++ + +L +Y + D+L + D +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I Q+G + E+ F +MI SG+ P+ F S+L +C+ + G
Sbjct: 374 KG-RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ + II G D AL++MYA+ G H V +KI
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKC------------------GSLKDAHRVFEKI 474
Query: 186 PERN 189
++N
Sbjct: 475 SKQN 478
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L S + +Q+ I + + + + LL +Y + D+ + + +
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ VAW ++I Q+ +L F ++ G+ P+ + F S+L C G
Sbjct: 475 -SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ VH I++ G++ DL+ +NAL++M+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMF 559
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T LL+ + K ++++ I K+ F+ + L+ +Y + + D
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDD 170
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ +W ++ Q+GL E+ +M+ V PD F S+L +C +
Sbjct: 171 MREK-DVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMY 151
G ++ I++ G D DL+ AL+NM+
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMH 256
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II Q+G + F M SG+ PD F +L +C G +HA
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I D D+ L++MY + +++ H+V K+P++N
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIE------------------DAHQVFHKLPKKN 680
>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 720
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+K K +H + K+ ++ + LL +Y +LV DSL + +K P V W S
Sbjct: 262 LKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYP-NQVTWTS 320
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I QNG +L F +M+ V P+ S L+ C+ L F G VH + + G
Sbjct: 321 LISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYG 380
Query: 137 VDLDLYTNNALMNMYAQSQNMDM 159
D D Y + L+ +Y + DM
Sbjct: 381 FDRDKYAGSGLIELYGKCGCSDM 403
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL ++ K + + +A++ H + LE ++ F+ S L+ +Y F ++ +LD
Sbjct: 149 TLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDR 208
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V ++I +Q G E++ F M+ V P+ + SVL SC L D
Sbjct: 209 VE-EKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN 267
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +++ G + L + +L+ MY + +D
Sbjct: 268 GKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 301
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T+T T LL+ + ++ S K + AQ+ K+ P S+L+ + +
Sbjct: 44 LTTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFP-VELSGSKLVDASLKCGEIGYARQ 102
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L D + V W SII ++ E++ + MI + V PD SV K+ + L
Sbjct: 103 LFDGM-PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLS 161
Query: 121 DFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+ + H + LG+++ +++ +AL++MY + F REA +
Sbjct: 162 LEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVK----------------FGKTREAKL- 204
Query: 180 EVLDKIPERN 189
VLD++ E++
Sbjct: 205 -VLDRVEEKD 213
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L+ ++ + +Q+H + K ++ S L+ +Y + + DTL
Sbjct: 352 TLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTL 411
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ ++ ++I QNG E+L F RMI G+ P+ SVL +C
Sbjct: 412 -SEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLAC 461
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ LL++ + + + +H + K +L +S ++ L +Y + N V + + D +
Sbjct: 2 FLRLLESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P P+AW +IR NG ++L + +M+ SGV P +P VLK+C L
Sbjct: 62 PHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIED 121
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H+ + D+Y AL++ YA+ +DM I +V D+
Sbjct: 122 GKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAI------------------KVFDE 163
Query: 185 IPERN 189
+P+R+
Sbjct: 164 MPKRD 168
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ S+I C +N ES F +M SG+ PD +L +C+ L G S H
Sbjct: 375 VSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGY 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM--------DMHIYDRFQ------GFGFNG-GREA 176
+ G ++ NALM+MY + + MH D GFG +G G+EA
Sbjct: 435 CVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEA 494
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 17/210 (8%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ L +LL+ ++ A H F+ F+ + L+ Y V D+ + D
Sbjct: 70 RALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDG 129
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ VAW ++ C Q E+L F M S V PD + +VL +C + RF
Sbjct: 130 MPD-RDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRF 188
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGF 170
G+++H+ ++ +D + ALMNMYA +M+M +Y+R G+
Sbjct: 189 GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAK 248
Query: 171 NGGREASVHEVLDKIPERNGNVELSSGLAG 200
NG E + H + + +P ++ V S+ +AG
Sbjct: 249 NGKVEIA-HSIFNGMPAKD-VVSWSAMIAG 276
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 25 QLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCCT 82
Q+HA I T L N I++L+ Y N + + + + K P + AW S+I +
Sbjct: 3 QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFE--KMPQRSINAWNSMIIAYS 60
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ E L + RMI G+ PD + F LK+C+ L+D GE + + G D++
Sbjct: 61 RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120
Query: 143 TNNALMNMYAQSQNMD 158
++++N+YA+S MD
Sbjct: 121 VVSSVLNLYAKSGKMD 136
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F++S +L +Y + + + D + V+W ++I Q+G ++++ + M
Sbjct: 120 FVVSSVLNLYAKSGKMDKAKIVFDKM-VKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQK 178
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
D V ++++CT L D +FG SVH ++R +++D +L++MYA++ +++
Sbjct: 179 ERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLEL 238
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QNG ++L V M SG PD S L +C + + + G+S+H
Sbjct: 252 ISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGH 311
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I++ + LD + AL++MYA+
Sbjct: 312 IVKR-LYLDKVSGTALIDMYAK 332
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+LI+ L + K LH I K L + + + L+ +Y + + L D +
Sbjct: 288 SLISSLSACAQVGNLKVGKSLHGHIVKRLYLD-KVSGTALIDMYAKCGALTFARALFDQI 346
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P + W ++I +G +E+L+ F++M + + PDH F S+L +C+
Sbjct: 347 E-PRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACS 397
>gi|302818918|ref|XP_002991131.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
gi|300141062|gb|EFJ07777.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
Length = 582
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ T ++K+ S ++ + A+ +H++I + N + + L+ +Y + ++ +
Sbjct: 101 AKATYFAVMKSFASAESLAGARLVHSRIVELGAENDDLVRAALIEMYGRCGSLEEAWSIF 160
Query: 63 DTLKT----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ P + W +II QNG L SL F +M GV PD + L +C
Sbjct: 161 SSSVAGDGGPHSVLVWNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAA 220
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G VH I G++ D++ NAL++MY + +++
Sbjct: 221 SGNLHEGRVVHGWITMKGLEQDVFVGNALVDMYGKCGSVE 260
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T I++L S++ Q LH+ I K E + R + + L+ +++ V D+L +
Sbjct: 253 TYISILNACTSLE---QGTLLHSVIMKAGFELDVR-VGTALVNMFSKCGSVVDALKVFQK 308
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L V+W S+I Q G +L C+ +M+ G+ D + ++L C +L D
Sbjct: 309 L-PQRNVVSWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEK 367
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G++VH I++ G+ D+ T N L++MY +
Sbjct: 368 GKAVHGHIVQSGIATDIITENGLIDMYVK 396
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++ +NG E+ F M+ G PD + S+L +CT L G +H+
Sbjct: 217 VTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTSLEQ---GTLLHSV 273
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I++ G +LD+ AL+NM+++ G +V K+P+RN
Sbjct: 274 IMKAGFELDVRVGTALVNMFSKC------------------GSVVDALKVFQKLPQRN 313
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ K +H I ++ + L+ +Y + D+ L + V+W ++I
Sbjct: 366 EKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVR-DVVSWTTLIEG 424
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q+ E+L F M GV P+ F VLK+C + G+ +HA I+ G+ +
Sbjct: 425 WVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGLAEN 484
Query: 141 LYTNNALMNMYAQ 153
+ +AL +MYA+
Sbjct: 485 AHIRHALADMYAK 497
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ + LL+ +K ++ K +HA + K+ + F+++ L+ +Y + D+ +
Sbjct: 48 SSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDARQVF 107
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + + ++ + G ++ + +M V D F ++L C+ L
Sbjct: 108 DRM-VERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSL 166
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G VH ++R G+ D+ N L++MYA+ N+
Sbjct: 167 EKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNL 201
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 3 STKTLINLLKNP---VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
S+ T N L P S K + Q+HAQI + I+ L+ +Y+ F+ +
Sbjct: 25 SSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVS-GFKHHHSITHLINLYSLFHKCDLAR 83
Query: 60 CLLDTLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ D+ TP P + W S+IR T++ E+L + M+ G+ PD F VLK+CT
Sbjct: 84 SVFDS--TPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
++ + G H I R G++ D++ L++MY++ ++
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK------------------RA 183
Query: 179 HEVLDKIPERNGNVELSSGLAGCNKFE 205
EV DK+P+R+ V ++ +AG ++ E
Sbjct: 184 REVFDKMPKRD-VVAWNAMIAGLSQSE 209
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W II QNG E+++ F +M +P+ F SVL + L FR G + HAC
Sbjct: 599 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 658
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II++G + N+L++MYA+ +D
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLD 685
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II Q G E+L+ F M + P+ S+L +C L + G+S+H
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ +D DL T AL++MYA+
Sbjct: 456 TVKADMDSDLSTGTALVSMYAK 477
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S+I Q G ++ F ++ S + PD V+ +C LL D G +H
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I++LG + D + NAL++MYA+
Sbjct: 557 IVKLGFESDCHVKNALIDMYAK 578
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ +L+NL + + +H +F+ S + + L+ +Y+ V + +
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFR--RDFSSAVSNGLIDLYSKCGDVDVARRVF 286
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + V+W +++ NG VE L F +M V + S + +D
Sbjct: 287 DQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H C ++ +D D+ LM MYA+
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAK 376
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 3 STKTLINLLKNP---VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
S+ T N L P S K + Q+HAQI + I+ L+ +Y+ F+ +
Sbjct: 25 SSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVS-GFKHHHSITHLINLYSLFHKCDLAR 83
Query: 60 CLLDTLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
+ D+ TP P + W S+IR T++ E+L + M+ G+ PD F VLK+CT
Sbjct: 84 SVFDS--TPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
++ + G H I R G++ D++ L++MY++ ++
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK------------------RA 183
Query: 179 HEVLDKIPERNGNVELSSGLAGCNKFE 205
EV DK+P+R+ V ++ +AG ++ E
Sbjct: 184 REVFDKMPKRD-VVAWNAMIAGLSQSE 209
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W II QNG E+++ F +M +P+ F SVL + L FR G + HAC
Sbjct: 599 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 658
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
II++G + N+L++MYA+
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAK 680
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW +II Q G E+L+ F M + P+ S+L +C L + G+S+H
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ +D DL T AL++MYA+
Sbjct: 456 TVKADMDSDLSTGTALVSMYAK 477
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S+I Q G ++ F ++ S + PD V+ +C LL D G +H
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I++LG + D + NAL++MYA+
Sbjct: 557 IVKLGFESDCHVKNALIDMYAK 578
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ +L+NL + + +H +F+ S + + L+ +Y+ V + +
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFR--RDFSSAVSNGLIDLYSKCGDVDVARRVF 286
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + V+W +++ NG VE L F +M V + S + +D
Sbjct: 287 DQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H C ++ +D D+ LM MYA+
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAK 376
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T + LL+N + +AK++HAQ+ + FL + L+ +Y V D+ +
Sbjct: 25 TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ ++W S+I C Q G ++ F M +G P+ + S+L +C +
Sbjct: 85 FKEMPR-RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +H+ II+ G D N+L++MY +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK 175
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL + + K +H I ++ ++ L + L+ +Y + ++ + +
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W S+I Q+G + F M + PD+ F SVL C G
Sbjct: 493 QA-RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG 551
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +H I G+ LD+ NAL+NMY
Sbjct: 552 KQIHGRITESGLQLDVNLGNALINMY 577
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +II + E++ + +M GV P F +L +C + G+ +H
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
I+R G+ + + NALMNMY + ++ M + F+G
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSL-MEAQNVFEG 491
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V + ++I Q+G VE+ + RM GV + + S+L +C+ G+ +H+
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I G D+ NAL++MYA+
Sbjct: 356 ISEDGHSSDVQIGNALISMYAR 377
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V + K A L IF +E S F + +++ Y+ +++L + T V+W
Sbjct: 184 VDMYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVF-TRMPERDHVSW 242
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I +Q G + L+ FV M G P+ + SVL +C + D ++G +HA I+R
Sbjct: 243 NTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILR 302
Query: 135 LGVDLDLYTNNALMNMYAQ 153
+ LD + + L++MYA+
Sbjct: 303 MEHSLDAFLGSGLIDMYAK 321
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S++ Q+G E + +V M V PD F + +++C L + G V +
Sbjct: 473 ITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSH 532
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G+ D+ N+++ MY++
Sbjct: 533 VTKFGLSSDVSVANSIVTMYSR 554
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 36/165 (21%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-------------------- 62
A++LHAQ+ + S FL++ LL +Y+N +V D+ +
Sbjct: 23 ARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82
Query: 63 -------DTLKTPAP-----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+ L P V+W ++I QNGL S+ F+ M+ + N P
Sbjct: 83 SGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDP 142
Query: 111 ----SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
+K+C L R +HA +I+L + N+L++MY
Sbjct: 143 FSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDMY 187
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 16/198 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L SI LHA+I + FL S L+ +Y + + + ++L
Sbjct: 276 TYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSL 335
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W I Q GL ++L F +M + V D ++L C+ G
Sbjct: 336 G-EQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAASG 394
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQ------GFGFN 171
E +H I+ G+D + NA++ MYA+ + + M + D F N
Sbjct: 395 ELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQN 454
Query: 172 GGREASVHEVLDKIPERN 189
G + + + D +PERN
Sbjct: 455 GDIDRA-RQCFDMMPERN 471
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
++F Y + + L DT+ V+W S++ C NG+ +S+ FVRM +
Sbjct: 78 MIFGYAEIGNMGFAQSLFDTM-PERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPH 136
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D+ F VLK+C+ + D+ G VH I++G + D+ T +AL++MY++ + +D
Sbjct: 137 DYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLD 190
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
IK + QLH K + + + +L +Y + ++ + D ++ V+W +
Sbjct: 353 IKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERR-DAVSWNA 411
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
II QN +V++L+ FV M+ S + PD + SV+K+C +G +H I++ G
Sbjct: 412 IIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSG 471
Query: 137 VDLDLYTNNALMNMYAQ 153
+ LD + +AL++MY +
Sbjct: 472 MGLDWFVGSALVDMYGK 488
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H +I K+ F+ S L+ +Y ++ ++ + D L+ V+W SII +
Sbjct: 462 EIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTT-VSWNSIISGFSSQ 520
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+ F +M+ GV PD+ + +VL C + G+ +HA I++L + D+Y
Sbjct: 521 KQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIA 580
Query: 145 NALMNMYAQSQNM 157
+ L++MY++ NM
Sbjct: 581 STLVDMYSKCGNM 593
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I QN +E L F M+ G+ + + SV +SC L F+ G +H
Sbjct: 205 VCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGH 264
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D A ++MYA+ M
Sbjct: 265 ALKSDFAYDSIIGTATLDMYAKCDRM 290
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++ N +I+ KQ+HAQI K + ++ S L+ +Y+ + DS + +
Sbjct: 547 TVLDVCANMATIEL---GKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFE-- 601
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
KTP V W ++I +G +++ F M V P+H +F SVL++C
Sbjct: 602 KTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACA 654
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
K++H + K F+ + L+ +Y+ F LV D+ L D + PA +W ++I
Sbjct: 13 GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDM--PARDRGSWNAMISGY 70
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG E+L M GV D SVL C + D G+ +H +I+ G++ +L
Sbjct: 71 CQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFEL 130
Query: 142 YTNNALMNMYAQ 153
+ +NAL+NMYA+
Sbjct: 131 FVSNALINMYAK 142
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++H Q+ K + F+ + L+ +Y + D++ L
Sbjct: 198 TWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLF--Y 255
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P V W ++I C +G ++L F M V PDH F S+L +C+
Sbjct: 256 QVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACS 308
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I QNGL E++ ++ M + P+ + S+L + + + + G +H
Sbjct: 161 VSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHG 220
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+I+ + D++ L++MY + +D
Sbjct: 221 QVIKNCLYSDVFVGTCLIDMYGKCGKLD 248
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLC 60
++ LI+LL P +I T Q KQ+HAQ +T+ PN+ FL + +L Y++ + +
Sbjct: 20 SQHLIHLLNEPTTI-TMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYA 78
Query: 61 LLDTLKTPAP-PVAWKSIIRCCTQNG------LLVESLTCFVRMIGSGVYPDHNVFPSVL 113
P P W ++IR ++ +E + M PD++ FP VL
Sbjct: 79 TRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVL 138
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
K+C G+ VHA +++ G + D Y N+L++ YA +D+
Sbjct: 139 KACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDL 184
>gi|302803061|ref|XP_002983284.1| hypothetical protein SELMODRAFT_117798 [Selaginella moellendorffii]
gi|300148969|gb|EFJ15626.1| hypothetical protein SELMODRAFT_117798 [Selaginella moellendorffii]
Length = 485
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
++ + ++LHAQ+ T FL + L+ +Y + D + T PV+W +
Sbjct: 24 VRALEEGRRLHAQLIDTGLDTGTFLGNLLVQMYGKCGSI-DRAREVFTAMPDRSPVSWTT 82
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I NGL S+ F M G PD F + L SC+ R G +HA + G
Sbjct: 83 MINALAHNGLWKRSIALFAEMDLDGARPDRLCFSAALDSCSSGAALREGRLLHAEAVAAG 142
Query: 137 VDLDLYTNNALMNMYAQ 153
++ +L AL+NMY +
Sbjct: 143 LEDELLVATALINMYGK 159
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 30/209 (14%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ LK+ + ++ + K +H K + F+ LL +Y + D+ L + +
Sbjct: 239 TISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM 298
Query: 66 -KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
KT P W +I Q+ E+L F+RM + V P++ F SVL++C V
Sbjct: 299 PKTDLIP--WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDL 356
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H+C+++ G++ +++ +NA+M++YA+ G E S+ ++ ++
Sbjct: 357 GKQIHSCVLKFGLNSNVFVSNAIMDVYAKC-----------------GEIENSM-KLFEE 398
Query: 185 IPERN---------GNVELSSGLAGCNKF 204
+P+RN G V+L G N F
Sbjct: 399 LPDRNDVTWNTIIVGYVQLGDGERAMNLF 427
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---NFNL---VHDSLCLLD 63
LLK VS+ LHA ++K F+ + L+ Y+ N ++ V D +C D
Sbjct: 142 LLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKD 201
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
V+W ++ C +N ESL F +M G P++ LKSC L F
Sbjct: 202 M-------VSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFN 254
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
G+SVH C ++ D DL+ AL+ +YA+S
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIALLELYAKS 285
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S + KQ+H+ + K ++ F+ + ++ +Y + +S+ L + L
Sbjct: 340 TFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEEL 399
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +II Q G ++ F M+ + P + SVL++ L G
Sbjct: 400 P-DRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPG 458
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ I+ + D N+L++MYA+
Sbjct: 459 LQIHSLTIKTMYNKDTVVANSLIDMYAK 486
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K LH I K F + LL Y N + D+ L D + +++ ++ + +
Sbjct: 54 GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMP-QTNTISFVTLAQGYS 112
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE---SVHACIIRLGVDL 139
++ ++L +R+ G + VF ++LK LLV ++HAC+ +LG
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLK---LLVSMDLAHLCWTLHACVYKLGHHA 169
Query: 140 DLYTNNALMNMYAQSQNMDM--HIYD 163
D + AL++ Y+ N+D+ H++D
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFD 195
>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1002
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
LL+ V + S Q+HA + K S F+ S+L+ +Y NL ++ +
Sbjct: 109 LLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVK 168
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
++ +I+ +NGL E+L +V M+ G PD+ V P+ LK+C L FG
Sbjct: 169 NQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRG 228
Query: 128 VHACIIRLGVDLD--LYTNNALMNMYAQ 153
+H ++++G + D +Y +L++MY +
Sbjct: 229 IHGFVVKMGNEFDGCVYVATSLVDMYGK 256
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++I QNGL E+ F +M G+G+ P+ S L +CT + +G S+H
Sbjct: 554 ITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGY 613
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
++R + L ++++MYA+ N+D
Sbjct: 614 VMRNFMSFSLQITTSIIDMYAKCGNLD 640
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKT-PAPPVAWKSIIRCCTQNGLLVESLTCFVRM- 97
++ + L+ +Y ++ D+ + D + V W S+I QNG+ VE++ F +M
Sbjct: 245 YVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMR 304
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
GV P +C L G+ HA +I +G +L+ +++MN Y++
Sbjct: 305 FEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSK 360
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H + + S + + ++ +Y + D+ + T PV + ++I
Sbjct: 607 GRSIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPV-YNAMISAYA 665
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G E+L F ++ G+ PDH F SVL +C+
Sbjct: 666 SHGKSAEALALFQELVKQGIMPDHITFTSVLSACS 700
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCCTQNGLL 87
++F L + + L+ Y V D++ L + + P VA W +II C+QNGL
Sbjct: 175 KLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFE--RMPERDVAAWNAIIAGCSQNGLF 232
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
VE++ F RM+G+G P+ VL +C L + G+ +H R V N L
Sbjct: 233 VEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNGL 292
Query: 148 MNMYAQSQNMD 158
++MY + N++
Sbjct: 293 IDMYGKCGNLE 303
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T +LK IK + + K++H + + + + L+ Y+ S+C+
Sbjct: 105 TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMG----SVCIAR 160
Query: 64 TL--KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ K PA VAW ++I C +Q GL E+L + +M V D ++ SC L
Sbjct: 161 QVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLG 220
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------ 166
G +H G+D LY NAL++MYA+ ++D I+DR Q
Sbjct: 221 ALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIV 280
Query: 167 GFGFNG-GREA 176
G+G +G G EA
Sbjct: 281 GYGVHGRGSEA 291
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 27/193 (13%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHD 57
M++ K ++ LL+ S+K + +++HA + + + + ++LL I + +L +
Sbjct: 1 MSNEKAILALLQGCNSLK---RLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYA 57
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSC 116
L L ++ P AW SIIR Q+ ++++ + +M+ S PD F VLK+C
Sbjct: 58 QL-LFHQMECPQTE-AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA 176
+ R + VH +IR G D D+ L+ Y+ G
Sbjct: 116 ERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAM------------------GSVC 157
Query: 177 SVHEVLDKIPERN 189
+V DK+P R+
Sbjct: 158 IARQVFDKMPARD 170
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP----PVAWKSIIRC 80
QLHA L+ RLL +Y + H SL L + + A P+ + +I
Sbjct: 94 QLHALSLSLGLSRHPILLPRLLSVYTS----HPSL--LPSAASVAADSTLPLPYNVLISS 147
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C ++GL +++L + M +GV PD +PSVL++C + G +VH G+D +
Sbjct: 148 CLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGN 207
Query: 141 LYTNNALMNMYAQSQNM 157
L+ NALM+MYA+ ++
Sbjct: 208 LFFQNALMSMYAKCGDL 224
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ L + ++LH I K R L + L+ +Y+ + + + DT+
Sbjct: 412 TVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTM 471
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+++ S+I G +L F +MI SG+ PDH + +VL +C+ G
Sbjct: 472 DD-CDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEG 530
Query: 126 ESV-HACIIRLGVDLDLYTNNALMNMYAQS 154
E + + +I G+ + + ++++YA++
Sbjct: 531 EELFNKMVISYGIKPQMEHYSCMIDLYARA 560
>gi|302761274|ref|XP_002964059.1| hypothetical protein SELMODRAFT_81625 [Selaginella moellendorffii]
gi|300167788|gb|EFJ34392.1| hypothetical protein SELMODRAFT_81625 [Selaginella moellendorffii]
Length = 474
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL + S + K +HA + + + + LL +Y + D+ L + +
Sbjct: 158 TFMSLLNSFASEEALEAGKVVHAHAAEAGLEDDVCVANSLLDMYGKCGSLGDTRLLFEKM 217
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W S+I C + G E+L + RM+ V PD F +VL +C L + G
Sbjct: 218 ELR-NFISWTSMITACFKQGKDREALHVYHRMLLEAVVPDRLTFATVLNACASLPSLKDG 276
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
++VH C+ G+ ++L AL++MY + ++
Sbjct: 277 KAVHGCVRERGLAIELSLGTALVSMYGKGGSL 308
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIR 79
+Q KQ+HA IF+ F++++LL ++ D L + P P W ++IR
Sbjct: 53 NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIR 112
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVD 138
G +ES+ + M G+ P F ++LK+C+ +D G VH I + G
Sbjct: 113 GYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFG 172
Query: 139 LDLYTNNALMNMYAQ 153
DLY N L++MY +
Sbjct: 173 SDLYVGNTLIDMYVK 187
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT K+ HAQ+ F+ +RL+ Y++F+ + + + D L P +
Sbjct: 31 KTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEP-DVFCCNVV 89
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I+ E+L M G+ P++ +P VLK+C + G +H ++ G+
Sbjct: 90 IKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGM 149
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
DLDL+ NAL+ YA+ Q++++ +V D+IP R+
Sbjct: 150 DLDLFVGNALVAFYAKCQDVEVS------------------RKVFDEIPHRD 183
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H I KT + + L+ +Y+N V + + D + + + W +IIRC +G
Sbjct: 243 IHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRI-SDRSVIVWSAIIRCYGTHG 301
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L E+L F +++G+G+ PD VF +L +C+
Sbjct: 302 LAQEALALFRQLVGAGLRPDGVVFLCLLSACS 333
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S++ T NG + +++ F M+ S PDH F +VL + D G +H
Sbjct: 185 VSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIH 244
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
I++ + LD L+++Y+ + M I+DR
Sbjct: 245 CYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDR 281
>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g47840
gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 706
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++ T T LK ++ K +H + + + + L +Y + D LC
Sbjct: 206 LSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLC 265
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + + + V+W S+I + G V+++ F++M S V P+ F S+ +C L
Sbjct: 266 LFENM-SERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 324
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+GE +H ++ LG++ L +N++M MY+ N+
Sbjct: 325 RLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNL 361
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LHA KT +S ++ S LL +Y + D C + + V W +II
Sbjct: 127 GESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKI-DKSCRVFSEMPFRNAVTWTAIITGLV 185
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E LT F M S D F LK+C L ++G+++H +I G L
Sbjct: 186 HAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLC 245
Query: 143 TNNALMNMYAQSQNM 157
N+L MY + M
Sbjct: 246 VANSLATMYTECGEM 260
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I+LL+ PV + ++ Q+ +PNS R L N + D
Sbjct: 17 TSISLLQKPV----EENIVRISNQVMVKFDPNSHL---RSLINAGNLRAARQ---VFD-- 64
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P V+W SII+ E+L F +R++ V PD +V VLK+C +
Sbjct: 65 KMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNI 124
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+GES+HA ++ + +Y ++L++MY + +D
Sbjct: 125 AYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKID 160
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKS 76
T QA+QLH+Q+ T FL +RL+ +Y F + + + D L++ + W S
Sbjct: 43 TLQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNS 102
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
IIR +G +L +V M G PD P V+++C+ L VH +++G
Sbjct: 103 IIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMG 162
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
L+ N L+ MY + M+
Sbjct: 163 FRNHLHVVNELVGMYGKLGRME 184
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W S++ + GL E+L F M G+ VL C + + +G+ +H
Sbjct: 233 SVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHG 292
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM-DMH 160
+++ G + L+ NAL+ Y + Q+M D H
Sbjct: 293 YVVKGGYEDYLFVKNALIGTYGKHQHMGDAH 323
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + ++ +KQ+H I K + L S L+ IY ++ D+ + D +
Sbjct: 163 TFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEI 222
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P ++W I+R + G E++ F +MI + + P + F + L +C+ + + G
Sbjct: 223 ENPNA-ISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEG 281
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFN 171
+H IR+G D D +++L++MYA+ +++ I++ G+ +
Sbjct: 282 IQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMS 341
Query: 172 G-GREASVHEVLDKIPERNGNVELSSGLAGCNKF 204
G REA V + D++PER+ + ++ LAG F
Sbjct: 342 GQTREARV--LFDEMPERS-VISWNAMLAGYTHF 372
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+A+++ + + FL++R + Y + + D+ L + + +W ++I
Sbjct: 78 EARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGG-SWNAMITAY 136
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G ++L F RM G++ + F SVL SC ++ + +H I++ G ++
Sbjct: 137 AQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNV 196
Query: 142 YTNNALMNMYAQSQNM 157
++L+++Y + + M
Sbjct: 197 ILGSSLVDIYGKCRVM 212
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H I++ ++ F+ + LL +Y + + + ++W +++
Sbjct: 413 GKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHA 472
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++GL E++T F M P ++L +C + G+ +H +IR G ++D+
Sbjct: 473 RHGLSEEAMTIFGEMQWETT-PSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVV 531
Query: 143 TNNALMNMYAQSQNMD 158
AL++MY++ + ++
Sbjct: 532 ARGALVDMYSKCRCLE 547
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 36 PNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
P+S+ LIS + Y ++ L D + + ++W +++ T E+L
Sbjct: 323 PSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSV-ISWNAMLAGYTHFCQWEEALEF 381
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M + DH +L C L D G+ VH I R G+ +L+ NAL++MY +
Sbjct: 382 VFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGK 441
Query: 154 SQNM 157
N+
Sbjct: 442 CGNL 445
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++HA I K S FL+++++ + N++ + L + P + ++IR
Sbjct: 29 ELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNA-FLYNAMIRAY 87
Query: 82 TQNGLLVESLTCFVRMIGSG-----VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
N + V ++T + +M+G+ ++PD FP V+KSC L+ + G+ VH + + G
Sbjct: 88 KHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 147
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+ N+L+ MY + ++D
Sbjct: 148 QKSNTVVENSLVEMYVKCDSLD 169
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I+ + G ++L F RM G+ PD SVL C L G+ +H
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYA 275
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G ++ NAL+ MYA+ ++D
Sbjct: 276 DKAGFLRNICVCNALIEMYAKCGSID 301
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNGL E+L CF+ M G PD L++ L G +H
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479
Query: 132 IIRLGVDLDLYTNNALMNMYAQS-------------QNMDMHIYDRF-QGFGFNG-GREA 176
I+ G DL+ NA++ MYA+S +N D+ ++ G+ NG G+EA
Sbjct: 480 TIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEA 539
Query: 177 SVHEVLDKIPERN---GNVELSSGLAGCN 202
E+ + +P R V + L+ CN
Sbjct: 540 V--ELFEVMPLRGIIPDEVTFTGLLSACN 566
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F+ +E + + + L+ ++ D+ L L + W +++ TQNGL +
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQ-LMVDRDSITWTTMVTGLTQNGLQL 260
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F RM GV D F S+L +C L G+ +HA I R + +++ +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320
Query: 149 NMYAQSQNMDM 159
+MY++ +++ +
Sbjct: 321 DMYSKCRSIRL 331
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ + KQ+HA I +T ++ F+ S L+ +Y+ + + + +
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I QN E++ F M G+ PD SV+ SC L G
Sbjct: 340 -TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H + G+ + +NAL+ +Y + +++
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIE 431
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S+ + QLH+ +FK + + LL +Y V +L + ++
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS- 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ Q L +S F +M +G+ P+ +P +L++CT + G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E +H+ ++ G + D+Y + L++MY++
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSK 392
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ KT + ++ L+ +Y+ + + + +L+ LK V+W S+I
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ ++L F M G++PD+ S + C + R G +HA I G D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 143 TNNALMNMYAQ--------SQNMDMHIYDRFQGFGF-NGGREASVHEVLDKI 185
NAL+N+YA+ S +M + D G G +G ++ +HE K+
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKV 534
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + I Q Q+HA+I+ + + + L+ +Y + ++ + ++
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEME 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRF 124
+ ++ Q+GL E+L F+RM SGV HNVF S L + L + +
Sbjct: 509 LK-DGITGNGLVSGFAQSGLHEEALKVFMRMDQSGV--KHNVFTFVSALSASANLAEIKQ 565
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +HA +I+ G + NAL+++Y +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGK 594
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ L ++ Q KQ+HA++ KT + + L+ +Y D+ +
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 609 -SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA+ R + + L+ +Y+ LV + + + L + V+W +++ QN
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL-SARDNVSWVAMLSGYAQN 121
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E+L + +M +GV P V SVL SCT F G +HA + G +++
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181
Query: 145 NALMNMY 151
NA++ +Y
Sbjct: 182 NAVITLY 188
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q + +HAQ +K + F+ + ++ +Y +F L C + T V + ++
Sbjct: 160 AQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDT----VTFNTL 215
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I Q G +L F M SG+ PD S+L +C L D + G +H+ + + G+
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D +L+++Y + +++
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVE 296
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A Q+HA + K F+ + LL Y F V + + ++ P V+W S++
Sbjct: 78 AFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEP-NIVSWTSLMVGYA 136
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NG + E ++ + R+ GVY + N +V++SC +LVD G V +I+ G+D +
Sbjct: 137 YNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVS 196
Query: 143 TNNALMNMYAQSQNMD 158
N+L++M+ +++
Sbjct: 197 VANSLISMFGNCDSIE 212
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ ++ N + + ++ C+ D +K ++W SII NG +SL F +M +
Sbjct: 201 LISMFGNCDSIEEASCVFDDMK-ERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKT 259
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
D+ ++L C + R+G +H +++ G++ ++ N+L++MY+Q+
Sbjct: 260 DYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQA 309
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T+ LL S + + LH + K+ ++ + + LL +Y+ D+ +
Sbjct: 259 TDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFV 318
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++ ++W S++ NG +L + M+ + ++ F + L +C L
Sbjct: 319 FHKMR-ERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLET 377
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ VHA +I LG+ +L NAL+ MY + +M
Sbjct: 378 LKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSM 410
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +QLH+ I K ++ ++++ + +Y + D +L ++ + +W +I
Sbjct: 580 EGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQR-SWNILISAL 638
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++G ++ F M+ G+ PDH F S+L +C+
Sbjct: 639 ARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACS 674
>gi|357513069|ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520845|gb|AET01299.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 355
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL S K + K +HA+ + + F+ ++L+ Y + + +H + L +
Sbjct: 14 LLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILF-SFTNRK 72
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
P S+IR L E+L+ F M S D + P VLKSC L R G+ VH
Sbjct: 73 PTFLNNSLIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQVH 132
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYD------------RFQGFGFNGGRE 175
++ G LDL +NAL+NMYA+ ++ ++D G+G + GR
Sbjct: 133 GAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMH-GRF 191
Query: 176 ASVHEVLDK---IPERNGNVELSSGLAGCN 202
V E+ ++ + ER NV + L C+
Sbjct: 192 EEVFEMFNRMVEVGERMDNVSFTVVLTACS 221
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 22/163 (13%)
Query: 30 IFKTLEPNSRFLIS---RLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86
IF+ + RF +S L + + V+ + LL L P P W +IR + +
Sbjct: 776 IFREMVHKGRFPVSVDRNYLLAVDATSDVNYAYKLLSKLSNP-PDYGWNFVIRGFSNSKN 834
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+S+ +++++ SG PDH +P +LKS + L + G S+H +++ G++ DL+ +N
Sbjct: 835 PEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNT 894
Query: 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
L++MY ++ +AS ++ D++P +N
Sbjct: 895 LIHMYGSFRD------------------KASARKLFDEMPYKN 919
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV-FPSV 112
LV D + + D V W S+I ++G E+L F +M+ G + V SV
Sbjct: 941 LVFDEMTMRDV-------VTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSV 993
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
L +C L + G+ VH I+ + + L + +L++MYA+
Sbjct: 994 LCACAHLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAK 1034
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+++ + + + K +H Q+ +L++++L +Y + D LC L
Sbjct: 76 SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL-DDLCYARKLFEE 134
Query: 69 APP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P AW ++I + +E+ F RM+ GV PD+ F S L+ C L G
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 194
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VH+ +I G D + NAL++MYA+ + E S +V D++
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCDD------------------EESCLKVFDEM 236
Query: 186 PERN 189
ERN
Sbjct: 237 GERN 240
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T LL + + +Q +Q+HA + + + + + L+ +Y+ ++ + + + +
Sbjct: 280 TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 339
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+W S+I QNG E+L F +M +G+ PD S+L SC L D + G
Sbjct: 340 -AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG 398
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
+H I+R ++ + L++MYA+ +MD +YD+
Sbjct: 399 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ 439
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ +++++ KQ+H+++ F+ + L+ +Y + L + D +
Sbjct: 177 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 236
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFR 123
V W SII Q G ++L F+RM S G+ PD F ++L C +
Sbjct: 237 -GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G +HA +IR + ++ L++MY++ GR E+ +
Sbjct: 296 QGRQIHAHLIRANITKNIIVETELVHMYSEC------------------GRLNYAKEIFN 337
Query: 184 KIPERNG 190
++ ERN
Sbjct: 338 RMAERNA 344
>gi|302823228|ref|XP_002993268.1| hypothetical protein SELMODRAFT_3910 [Selaginella moellendorffii]
gi|300138938|gb|EFJ05689.1| hypothetical protein SELMODRAFT_3910 [Selaginella moellendorffii]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S+ +++HA++ K+ FL + L+ Y DS + D +K + V W ++I
Sbjct: 15 SRGREIHARMIKSGLTEDVFLGTALVNFYGKAGSADDSRAVFDRMKQRSL-VTWNAMISA 73
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C + S+ F RM G+ PD F ++L + G+++H ++ GV LD
Sbjct: 74 CVHDDY--SSMLVFQRMQHEGIKPDKLTFVTILNASG--TSLATGKTIHGYVLESGVPLD 129
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRFQ 166
AL+NMY+++ +D ++DR Q
Sbjct: 130 SMLETALLNMYSKAGGLDHSQWMFDRCQ 157
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ K +H + ++ P L + LL +Y+ + S + D ++ +W +++
Sbjct: 112 ATGKTIHGYVLESGVPLDSMLETALLNMYSKAGGLDHSQWMFDRCQSRDDVSSWNTLVTA 171
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++G E+L F RM G P+ + F SVL C+
Sbjct: 172 LARHGRGDEALRHFYRMQSEGARPNSSTFLSVLSGCS 208
>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
[Vitis vinifera]
Length = 711
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + ++ +KQ+H I K + L S L+ IY ++ D+ + D +
Sbjct: 163 TFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEI 222
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P ++W I+R + G E++ F +MI + + P + F + L +C+ + + G
Sbjct: 223 ENP-NAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEG 281
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFN 171
+H IR+G D D +++L++MYA+ +++ I++ G+ +
Sbjct: 282 IQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMS 341
Query: 172 G-GREASVHEVLDKIPERNGNVELSSGLAGCNKF 204
G REA V + D++PER+ + ++ LAG F
Sbjct: 342 GQTREARV--LFDEMPERS-VISWNAMLAGYTHF 372
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+A+++ + + FL++R + Y + + D+ L + + +W ++I
Sbjct: 78 EARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGG-SWNAMITAY 136
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G ++L F RM G++ + F SVL SC ++ + +H I++ G ++
Sbjct: 137 AQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNV 196
Query: 142 YTNNALMNMYAQSQNMD 158
++L+++Y + + M
Sbjct: 197 ILGSSLVDIYGKCRVMS 213
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H I++ ++ F+ + LL +Y + + + ++W +++
Sbjct: 413 GKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHA 472
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++GL E++T F M P ++L +C + G+ +H +IR G ++D+
Sbjct: 473 RHGLSEEAMTIFGEMQWETT-PSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVV 531
Query: 143 TNNALMNMYAQSQNMD 158
AL++MY++ + ++
Sbjct: 532 ARGALVDMYSKCRCLE 547
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 36 PNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTC 93
P+S+ LIS + Y ++ L D + + ++W +++ T E+L
Sbjct: 323 PSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSV-ISWNAMLAGYTHFCQWEEALEF 381
Query: 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M + DH +L C L D G+ VH I R G+ +L+ NAL++MY +
Sbjct: 382 VFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGK 441
Query: 154 SQNM 157
N+
Sbjct: 442 CGNL 445
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 25 QLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
QLH+ K LEP + + LL +Y + D+ L + L V W +I C Q
Sbjct: 263 QLHSLAVKCGLEPEVA-VANTLLAMYAKCQCLDDAWRLFE-LMPQDDLVTWNGMISGCVQ 320
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NGL VE+ F M SG PD S+L + T L + G+ VH I+R V++D++
Sbjct: 321 NGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFL 380
Query: 144 NNALMNMYAQSQNMDM--HIYDR------------FQGFGFNGGREASVH---EVLDKIP 186
+AL+++Y + +++ M ++YD G+ NG E ++ +L++
Sbjct: 381 VSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCI 440
Query: 187 ERNGNVELSSGLAGC 201
+ N V ++S L GC
Sbjct: 441 KPNA-VTIASVLPGC 454
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++LL + Q K++H I + FL+S L+ IY V + L D
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA 404
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V ++I NG+ E+L F ++ + P+ SVL C + G
Sbjct: 405 RA-IDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLG 463
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+ +H ++R + Y +ALM+MYA+ +D+ Y
Sbjct: 464 QQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHY 500
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L S+ +Q+H + + ++ S L+ +Y + S + +
Sbjct: 446 TIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKM 505
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I +QNG E+L F +M G+ ++ + L +C L +G
Sbjct: 506 -SQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYG 564
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ +H I+ + D++ +AL++MYA+ N+++ +
Sbjct: 565 KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELAL 600
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
++S L+ +L+ VS Q+HA+ + + N L +RLL +Y D
Sbjct: 29 VSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRD 88
Query: 58 SLCLLDTL--KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVL 113
++ + L A + W +IR T G ++ +V+M + PD + P V+
Sbjct: 89 AVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVV 148
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173
KSC L G VH +G+ D+Y +AL+ MYA + G
Sbjct: 149 KSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYA------------------DAG 190
Query: 174 REASVHEVLDKIPERN 189
+ + D IPER+
Sbjct: 191 LLGNARDAFDGIPERD 206
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
AP V W S+IR N S+ + ++I +G PDH FP VLK+C + D G+
Sbjct: 55 APSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKC 114
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+H CI++ G + D YT L++MY +M
Sbjct: 115 IHCCIVKSGFEADAYTATGLLHMYVSCADM 144
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I Q E+L F M SG+YPD F SVL C L G++VHA
Sbjct: 268 VSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAY 327
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+ + G+ D+ AL++MYA++
Sbjct: 328 LXKTGIGTDISLATALLDMYAKT 350
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK +I + K +H I K+ + + LL +Y + + L + D +
Sbjct: 99 VLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPI-W 157
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
VAW +I N E+L F M GV P+ + L C DF G+ VH
Sbjct: 158 NVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVH 217
Query: 130 ACIIRLGVDLDLYTNN-------ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
I + G D + T+N A++ MYA+ G ++
Sbjct: 218 QHIRKAGYDPFMSTSNSNIILATAILEMYAKC------------------GSFKIARDLF 259
Query: 183 DKIPERNGNVELSSGLAGCNKFEK 206
+K+P+RN V +S + N++E+
Sbjct: 260 NKMPQRN-IVSWNSMINAYNQYER 282
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q K LH + K +L++ LL +Y +V D+ + D L V+W ++I
Sbjct: 221 QGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHG-IDIVSWTAMIVGY 279
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
TQNG E+L F++ V P+ SV SC+ L++ G S+H I+LG D
Sbjct: 280 TQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRDP 338
Query: 142 YTNNALMNMYAQSQ 155
N+L++ YA+ Q
Sbjct: 339 IVTNSLVDFYAKCQ 352
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW SII +QNG E+L F +M V PD SVL +C L + G S HA
Sbjct: 370 VAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAY 429
Query: 132 IIRLG-VDLDLYTNNALMNMYAQ 153
++ G + ++Y AL+ YA+
Sbjct: 430 AVKRGLLSSNVYVGTALLTFYAK 452
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++LK + + +++H QI K P+S F+ + L+ +Y + S + D
Sbjct: 108 HVLKACSESRNFDEGRKVHCQIVKFGNPDS-FVFTGLVDMYAKCGEIECSRSVFDE-NLD 165
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+W S+I QN L + L F RM + + ++ +C L G+ +
Sbjct: 166 RNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWL 225
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
H +I+ G++L Y AL+++YA+
Sbjct: 226 HGYLIKCGIELGSYLVTALLDLYAK 250
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
++L+ +Y +F + + + DT+ P ++WK IIR N + + + RM
Sbjct: 41 TKLVSLYGSFGRLDLARLVFDTIPHP-DFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLK 99
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
D+ VF VLK+C+ +F G VH I++ G + D + L++MYA+ ++
Sbjct: 100 ECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIE 154
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S+ + QLH+ +FK + + LL +Y V +L + ++
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS- 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ Q L +S F +M +G+ P+ +P +L++CT + G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E +H+ ++ G + D+Y + L++MY++
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSK 392
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + I Q Q+HA+I+ + + + L+ +Y + ++ + ++
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRF 124
+ W ++ Q+GL E+L F+RM SGV HNVF S L + L + +
Sbjct: 509 HK-DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV--KHNVFTFVSALSASANLAEIKQ 565
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +HA +I+ G + NAL+++Y +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGK 594
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ KT + ++ L+ +Y+ + + + +L+ LK V+W S+I
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ ++L F M G++PD+ S + C + R G +HA I G D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 143 TNNALMNMYAQ 153
NAL+N+YA+
Sbjct: 483 IWNALVNLYAR 493
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ L ++ Q KQ+HA++ KT + + L+ +Y D+ +
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 609 -SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA+ R + + L+ +Y+ LV + + + L + V+W +++ QN
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL-SARDNVSWVAMLSGYAQN 121
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E+L + +M +GV P V SVL SCT F G +HA + G +++
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181
Query: 145 NALMNMY 151
NA++ +Y
Sbjct: 182 NAVITLY 188
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q + +HAQ +K + F+ + ++ +Y +F L C + T V + ++
Sbjct: 160 AQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDT----VTFNTL 215
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I Q G +L F M SG+ PD S+L +C L D + G +H+ + + G+
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D +L+++Y + +++
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVE 296
>gi|242091920|ref|XP_002436450.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
gi|241914673|gb|EER87817.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
Length = 686
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
+S L++ Y ++ +H +LCL D ++ P+ + W S+I C + FVRM+ S
Sbjct: 244 LSALVYGYASYGQLHKALCLFDKVENPSIAL-WNSLISGCVPAYHGDSAFVLFVRMLRSD 302
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ P+ +++ VL C L + G+ HAC ++ G DL +AL++ Y++
Sbjct: 303 MLPNSSIYAIVLNMCGFLGMLKPGQQTHACALKSGAVNDLIAASALIDFYSKCSLW---- 358
Query: 162 YDRFQGFG 169
D Q FG
Sbjct: 359 ADACQAFG 366
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q F L + +++ ++ +Y+N + ++ + D + + + ++W S+I +QNG +
Sbjct: 363 QAFGELRHHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSV-ISWNSMIVGFSQNGHAL 421
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
+++ F M G+ D+ SVL + + FGE + A I LG+ D ++L+
Sbjct: 422 DAMELFCEMHWLGLQIDNVAVSSVLSASGSICSISFGEQIFALAIALGLQSDHIVVSSLI 481
Query: 149 NMYAQSQNM 157
++Y + N+
Sbjct: 482 DLYCKCGNL 490
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 19 TKSQAKQLHAQIFK--TLEPNSRFLISRLLFIY--NNFNLVHDSLCLLDTLKTPAPPVAW 74
T S+ +Q+HA++ K L+ S + ++L+ +Y N ++L D+ LLD + P A+
Sbjct: 95 TLSEFRQIHARVVKLNALKWKSS-IGNKLVVLYCKNQWSL-EDARKLLDEIPNRTVP-AY 151
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++IR ++ E + F M+ G+ PD + P++LK+C+ ++ R G+ VH +IR
Sbjct: 152 AALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIR 211
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
V+ D++ NAL++ Y+ ++
Sbjct: 212 KSVESDVFVGNALIHFYSNCGDL 234
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W II C QNG L ++L F RM+ P+ S+L +CT L R G+++H
Sbjct: 321 SWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIA 380
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G+ ++Y ++++MY++ + D
Sbjct: 381 XKHGIVGNVYVEGSVIDMYSKCGSYD 406
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
Q K++H + EPN F+ S L+ +Y ++ + + +D T V+W ++
Sbjct: 555 QGKEIHGYTLRNGFEPNI-FVSSALVDMYAKCHDMDSANKVFFRIDGRNT----VSWNAL 609
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ N E+L F+ M+G G+ P F + +C + RFG +H + +
Sbjct: 610 MAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQL 669
Query: 138 D-LDLYTNNALMNMYAQ 153
D L +AL++MYA+
Sbjct: 670 DELKNAIXSALIDMYAK 686
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL S+ + QLH+ +FK + + LL +Y V +L + ++
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS- 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ Q L +S F +M +G+ P+ +P +L++CT + G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E +H+ ++ G + D+Y + L++MY++
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSK 392
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L + + I Q Q+HA+I+ + + + L+ +Y + ++ + ++
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE 508
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRF 124
+ W ++ Q+GL E+L F+RM SGV HNVF S L + L + +
Sbjct: 509 HK-DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV--KHNVFTFVSALSASANLAEIKQ 565
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ +HA +I+ G + NAL+++Y +
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGK 594
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ KT + ++ L+ +Y+ + + + +L+ LK V+W S+I
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYV 422
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ ++L F M G++PD+ S + C + R G +HA I G D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 143 TNNALMNMYAQ 153
NAL+N+YA+
Sbjct: 483 IWNALVNLYAR 493
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ L ++ Q KQ+HA++ KT + + L+ +Y D+ +
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 609 -SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA+ R + + L+ +Y+ LV + + + L + V+W +++ QN
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL-SARDNVSWVAMLSGYAQN 121
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL E+L + +M +GV P V SVL SCT F G +HA + G +++
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181
Query: 145 NALMNMY 151
NA++ +Y
Sbjct: 182 NAVITLY 188
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+Q + +HAQ +K + F+ + ++ +Y +F L C + T V + ++
Sbjct: 160 AQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDT----VTFNTL 215
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I Q G +L F M SG+ PD S+L +C L D + G +H+ + + G+
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D +L+++Y + +++
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVE 296
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F+ +E + + + L+ ++ D+ L L + W +++ TQNGL +
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQ-LMVDRDSITWTTMVTGLTQNGLQL 260
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F RM GV D F S+L +C L G+ +HA I R + +++ +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320
Query: 149 NMYAQSQNMDM 159
+MY++ +++ +
Sbjct: 321 DMYSKCRSIRL 331
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ + KQ+HA I +T ++ F+ S L+ +Y+ + + + +
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I QN E++ F M G+ PD SV+ SC L G
Sbjct: 340 -TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H + G+ + +NAL+ +Y + +++
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIE 431
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L + LK V + + K +H KTL + LL +Y + D+ + + +
Sbjct: 251 VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI 310
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ ++ F+RM+ S V P+ VL++C + G
Sbjct: 311 PHD-DVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELG 369
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
E +H I+LG + +L+ NALM+MYA+ +NM+ + I+ Q
Sbjct: 370 EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQ 412
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LK V++ A +HA K + F+ + L+ Y+ V + C+ D +
Sbjct: 150 VLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGI 209
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ C ++N + +L F +M +G P+ V S LK+ L G
Sbjct: 210 -VGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLG 268
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H C ++ D + + AL++MYA+ +++
Sbjct: 269 KGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIE 301
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L +L+ +I +Q+H K + F+ + L+ +Y + +SL + +L
Sbjct: 352 SLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSL 411
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ A V+W +II Q+G ++L+ F M + + F SVL++C +
Sbjct: 412 Q-DANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHA 470
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ I + + D N+L++ YA+
Sbjct: 471 VQIHSLIEKSTFNNDTIVCNSLIDTYAK 498
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MTSTK-TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M ST+ T ++L+ + + A Q+H+ I K+ N + + L+ Y + D+L
Sbjct: 447 MLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDAL 506
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--- 116
+ +++ V+W SII +G +L F RM S + + F S+L C
Sbjct: 507 KVFESI-VECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGST 565
Query: 117 -----------TLLVDFRFGESV--HACIIRL 135
++++D R S+ + CI+RL
Sbjct: 566 GLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRL 597
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L++ +++ QLHA K ++ F+ S LL Y + ++ +LD
Sbjct: 43 TFGTVLRSATALRAPRAGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDT 102
Query: 66 KTP---------------------------APP---VAWKSIIRCCTQNGLLVESLTCFV 95
+ P P V+W ++I C+Q GL E++ F+
Sbjct: 103 REPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFL 162
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
M GV P+ + FP VL S G SVHA I+ LD+Y N+L++ YA+
Sbjct: 163 EMCREGVTPNESTFPCVLTSVANAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFYARCG 222
Query: 156 NMD 158
+++
Sbjct: 223 SLE 225
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+ + I T+ G ++L F +++ GV P+ F +VL+S T L R G +HAC
Sbjct: 7 VSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAGVQLHAC 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+LG+ +++ +AL++ YA+ M REA H VLD E N
Sbjct: 67 AAKLGLCSNVFVGSALLDHYAKMGAM----------------REA--HGVLDDTREPN 106
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 6 TLINLLK----NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
TL+ +L +P S + A +HA++ K L P+ L + L+ Y L H +L L
Sbjct: 69 TLLTVLSACADSPSSPLARRLALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQL 127
Query: 62 LDTLKT-----------------------------PAP-PVAWKSIIRCCTQNGLLVESL 91
D + PAP V+W ++I C +NG E++
Sbjct: 128 FDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAI 187
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
CF M+ GV PD+ +V+ +C + G VH ++R G++ ++ N+L++MY
Sbjct: 188 NCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMY 247
Query: 152 AQSQNMDM 159
A+ +++
Sbjct: 248 ARCGQVEL 255
>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + KT + F+ S L+ +Y+ L +L + ++ T VAW S+I C ++N
Sbjct: 497 QVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMISCYSRN 555
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L S+ F M+ G++PD SVL + + G+S+H +RLG+ D +
Sbjct: 556 NLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLK 615
Query: 145 NALMNMYAQS--QNMDMHIYDRFQ------------GFGFNGG--REASVHEVLDKIPER 188
NAL++MY + +I+ + Q G+G +G S+ + + K E
Sbjct: 616 NALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES 675
Query: 189 NGNVELSSGLAGCN 202
+V S ++ CN
Sbjct: 676 PDDVTFLSLISACN 689
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL N++ + + K +HA++FK ++ + S LL +Y+ D+ + ++
Sbjct: 375 TLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSM 434
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFR 123
+ VAW S+I +NG E+L F M + PD ++ SV +C L R
Sbjct: 435 EEK-DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALR 493
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FG VH +I+ G+ L+++ ++L+++Y++
Sbjct: 494 FGLQVHGSMIKTGLVLNVFVGSSLIDLYSK 523
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTL 118
C+ D+ +PA S IR Q G +++L + + GS + FPS+LK+C+
Sbjct: 16 CVADSYISPASI---NSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSA 72
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
L + +G+++H ++ LG D + +L+NMY + +D + ++D +
Sbjct: 73 LTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWS 122
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ + KQ+H + + FL + L+ +Y F L D+ + ++ + V W +I
Sbjct: 186 REEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIV 245
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+G+ SL ++ + V F L +C+ + FG +H ++++G+
Sbjct: 246 GFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN 305
Query: 140 DLYTNNALMNMYAQ 153
D Y +L++MY++
Sbjct: 306 DPYVCTSLLSMYSK 319
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N ++ + LL +Y+ +V ++ + + + W +++
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEI-WNAMVAAYA 349
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+N +L F M V PD +V+ C++L + +G+SVHA + + +
Sbjct: 350 ENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTST 409
Query: 143 TNNALMNMYAQ 153
+AL+ +Y++
Sbjct: 410 IESALLTLYSK 420
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
TS T +LLK ++ S K +H + F+ + L+ +Y + ++ +
Sbjct: 58 TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQV 117
Query: 62 LDTLKTPAPPVA------WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
D V+ W S+I + E + CF RM+ GV PD V+
Sbjct: 118 FDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSV 177
Query: 116 CTLLVDFRF--GESVHACIIRLGVDLDLYTNNALMNMY 151
+FR G+ +H ++R +D D + AL++MY
Sbjct: 178 MCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMY 215
>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
Length = 809
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLV 55
+ ++ LLK + + K+LHAQI ++ E +RFL + L+ +Y
Sbjct: 13 ACRSYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRT 72
Query: 56 HDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
++ D++ +W SI+ GL ++L F +MI +GV PD VF + L
Sbjct: 73 DEAQRAFDSI-AHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNV 131
Query: 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
C +L G +H I +D DL NAL++MY + +D+
Sbjct: 132 CGILKRLEDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDL 175
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I G E+L + GV P+ F S L +C+ L D G ++H I
Sbjct: 296 WNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQD---GRALHLLID 352
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
G D ++ NAL+ MY +
Sbjct: 353 ESGFDREVSVANALVTMYGR 372
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
++R L + + L+ D+L L D + A W +I+ T GL E+L + RM+ SG
Sbjct: 63 LTRALRGFADSGLMEDALQLFDEM-NKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSG 121
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V D +P V+KS T + G+ +HA +I+L D+Y N+L+++Y +
Sbjct: 122 VKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMK 173
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 17 IKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+ + + K+LH ++ +E +++ +L +Y+ + V + + + VAW
Sbjct: 240 VYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCI-IQRNIVAWN 298
Query: 76 SIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I C +N + ++ CF +M +G+ PD ++L +C +L G ++H +R
Sbjct: 299 VLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAILE----GRTIHGYAMR 354
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G + + AL++MY + G+ S + D+I E+N
Sbjct: 355 RGFLPHIVLDTALIDMYGE------------------WGQLKSAEVIFDRIAEKN 391
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLINLL + + + +H + L + L+ +Y + + + + D +
Sbjct: 332 TLINLLPACAIL----EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRI 387
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W SII QNG +L F ++ S + PD S+L + + G
Sbjct: 388 -AEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEG 446
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+HA I++ + N+L++MYA +++
Sbjct: 447 RQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLE 479
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLL 62
+ T+ ++L + S+ +Q+HA I K+ ++ +++ L+ +Y + D+ C
Sbjct: 427 STTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFN 486
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L V+W SII +G S+ F MI S V P+ + F S+L +C++
Sbjct: 487 HVLLKDV--VSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSI 540
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
++K+ I + + K++HA + K + ++ + L+ +Y D+ + + +
Sbjct: 132 VIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMP-ER 190
Query: 70 PPVAWKSIIR--CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V+W S+I ++G SL F M+ G PD S L +C+ + G+
Sbjct: 191 DIVSWNSMISGYLALEDGF--RSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKE 248
Query: 128 VHACIIRLGVDL-DLYTNNALMNMYAQ 153
+H +R ++ D+ ++++MY++
Sbjct: 249 LHCHAVRSRIETGDVMVMTSILDMYSK 275
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I C +QN E+L F M G+ PD +V+ +C L G+ +H
Sbjct: 209 ISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYY 268
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I++ G +LD+Y +AL++MYA+ ++D
Sbjct: 269 IMQHGFNLDVYIGSALIDMYAKCGSLD 295
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
++A + KT +L+++ + + FN + ++ ++ P V + ++I+ Q+
Sbjct: 1 MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFV-YNAMIKGFVQSY 59
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
V++L +V+M+ + V P FPS++K+C L+ RF E+VH + R G D ++
Sbjct: 60 QPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQT 119
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+L++ Y+ + GR V D++PER+
Sbjct: 120 SLVDFYS------------------SMGRIEESVRVFDEMPERD 145
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 21 SQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKS 76
SQ KQ+HAQ+ +T +P + I + + +L + L + P P S
Sbjct: 2 SQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFS---QIPNPTSYTCNS 58
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
IIR CT L E+L + M+ G+ PD FPS+ KSC + G+ +H +LG
Sbjct: 59 IIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCR---NSSEGKQIHCHSTKLG 115
Query: 137 VDLDLYTNNALMNMYA 152
D Y N LMNMY+
Sbjct: 116 FASDTYAQNTLMNMYS 131
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+N+L + + K++H I + L + L+ +Y V + L D
Sbjct: 189 TLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ +W +I ++ E+L F M G+ D S+L +CT L G
Sbjct: 249 QEK-NLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG 307
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +HA I + +D+D+ AL++MYA+ +++ I +V ++
Sbjct: 308 KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAI------------------QVFHEM 349
Query: 186 PERN--GNVELSSGLAGCNKFE 205
PE++ L GLA C + E
Sbjct: 350 PEKDVMTWTALILGLAMCGQAE 371
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 6 TLINLLK----NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
TL+ +L +P S + A +HA++ K L P+ L + L+ Y L H +L L
Sbjct: 14 TLLTVLSACADSPSSPLARRLALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQL 72
Query: 62 LDTLKT-----------------------------PAP-PVAWKSIIRCCTQNGLLVESL 91
D + PAP V+W ++I C +NG E++
Sbjct: 73 FDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAI 132
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
CF M+ GV PD+ +V+ +C + G VH ++R G++ ++ N+L++MY
Sbjct: 133 DCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMY 192
Query: 152 AQSQNMDM 159
A+ +++
Sbjct: 193 ARCGQVEL 200
>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
Length = 806
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T +L V+I + +H ++ ++ L+ + F + L+ +Y + + + +T
Sbjct: 458 TFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFET 517
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+KT VAW +II Q+G +L + RM+ SG++PD ++L +C L D
Sbjct: 518 MKTK-DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAM 576
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
GE +H +R ++ D + NAL MYA+ +++ +Y R +G
Sbjct: 577 GEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRG 621
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL---VDFRFGESV 128
V+W S+I Q G S+ F MI G+ P+ + SV+ + L G +
Sbjct: 316 VSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKI 375
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
H+ I G+D D N+L+NMYA+S
Sbjct: 376 HSQITASGIDADPIVQNSLINMYARS 401
>gi|308081250|ref|NP_001182909.1| uncharacterized protein LOC100501193 [Zea mays]
gi|238008118|gb|ACR35094.1| unknown [Zea mays]
Length = 402
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDH 106
+Y+ L+H++ + D + V W ++I +NG L ++ F M G V D
Sbjct: 1 MYSKCGLLHEACRVFDQMPQK-DAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQ 59
Query: 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+VF S L + L D FG S+H CII+ G +L+ NAL++MYA+S +++
Sbjct: 60 HVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLE 111
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT + F+ S L+++Y N L+ SL L + +
Sbjct: 163 TFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEI 222
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFR 123
+AW ++I Q+G ++ F RM SG+ P+H F +L +C+ LVD
Sbjct: 223 GYRTE-IAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEG 281
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H+ G++ + +++MY ++ +D
Sbjct: 282 LG-YFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLD 315
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 71 PVAWK-----SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P W S+I + G + E+L + + GV P+ F S++K C + G
Sbjct: 121 PGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQG 180
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA 152
+HA +++ + D + + L+ MY
Sbjct: 181 AQLHAQVLKTNLISDSFVGSTLVYMYG 207
>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
Length = 806
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T +L V+I + +H ++ ++ L+ + F + L+ +Y + + + +T
Sbjct: 458 TFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFET 517
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+KT VAW +II Q+G +L + RM+ SG++PD ++L +C L D
Sbjct: 518 MKTK-DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAM 576
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
GE +H +R ++ D + NAL MYA+ +++ +Y R +G
Sbjct: 577 GEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRG 621
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL---VDFRFGESV 128
V+W S+I Q+G ++ F MI G+ P+ + SV+ + L G +
Sbjct: 316 VSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKI 375
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
H+ I G+D D N+L+NMYA+S
Sbjct: 376 HSQITASGIDADPIVQNSLINMYARS 401
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ L+ +L+ VS S Q+H + + L L +RL+ +Y D++ +
Sbjct: 40 RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99
Query: 64 TLKTPAPPVA--WKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKSCTLL 119
+L A A W +IR T G +L +++M S PD + FP V+KSC L
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G VH LG+D D++ +AL+ MYA NGG
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKMYA------------------NGGLLWDAR 201
Query: 180 EVLDKIPERN 189
+V D + ER+
Sbjct: 202 QVFDGMAERD 211
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 17/212 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++LL + +Q K+LH I + FL+S L+ IY V + + D+
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V ++I NG+ E++ F ++ G+ P+ SVL +C + + G
Sbjct: 410 KA-IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLG 468
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQG------------FGFN 171
+ +H+ ++ + Y +ALM+MYA+ +D+ +I+ + F N
Sbjct: 469 QELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQN 528
Query: 172 GGREASVHEVLDKIPE--RNGNVELSSGLAGC 201
G E +++ + E + NV +SS L+ C
Sbjct: 529 GEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ ++L S+ ++LH+ K ++ S L+ +Y + S + +
Sbjct: 451 AIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKI 510
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I QNG E+L F M GV + SVL +C L +G
Sbjct: 511 -SAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H +I+ + DL+ +AL++MY + N++ H V + +
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW------------------AHRVFESM 611
Query: 186 PERN 189
PE+N
Sbjct: 612 PEKN 615
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I C QNG + ++L F M SG+ PD S+L + T L F G+ +H
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373
Query: 132 IIRLGVDLDLYTNNALMNMY--AQSQNMDMHIYD 163
I+R V +D++ +AL+++Y ++ M +YD
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYD 407
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ T T L K + S + +H+ + + + RF+ + L+ +Y+ F +
Sbjct: 133 LPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQ 192
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + + + VAW S+I NG+ E+LT + M GV PD S+L +C L
Sbjct: 193 VFEIM-SYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELG 251
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
GE VH ++++G+ + + +NAL+++Y++ N
Sbjct: 252 ALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGN 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
AP + W ++IR ++ ++ F +M S + PD + FP + K+ L+D GE
Sbjct: 97 APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYA 152
+H+ ++R G D + N+L++MY+
Sbjct: 157 GIHSVVVRNGFDSLRFVQNSLVHMYS 182
>gi|326524233|dbj|BAK00500.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 56 HDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVL 113
HD+ LLD +TP AW ++I C + G + + F M+ G P+ V +VL
Sbjct: 69 HDARWLLD--ETPKRSAAAWTAVIAGCARAGRHADGMGAFAEMLAEGGAAPNAFVLAAVL 126
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ C+ L D G+ +H ++R GV LD NA+++MYA+S + ++
Sbjct: 127 RCCSGLGDVESGKRIHGWLLRNGVHLDRVLCNAVLDMYAKSGDYEL 172
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +II +NG ++L M +GV +H + + L +L G +H +
Sbjct: 218 SWNTIISGLMRNGCAAKALDRLYHMARAGVEFNHYTYSTALALAGMLSMLDLGRQLHGRV 277
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
+ ++ D + ++LM+MY + ++ +++R+
Sbjct: 278 LTSALEADAFVRSSLMDMYCKCSSIKTAVLVFERW 312
>gi|449453543|ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449515851|ref|XP_004164961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 308
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 29/202 (14%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
KQ+HA + F+ ++L Y + + + + T P + ++IR +
Sbjct: 28 KQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIF-SFATRRPTYLFNTLIRAHSS 86
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
L +SL+ F M+ SG D + P VLKSCT L R G VH ++ G DL +
Sbjct: 87 LRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALLINGFSADLPS 146
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCN- 202
NAL+ MY + ++ + +V D +PERN V S+ +AG
Sbjct: 147 LNALITMYGKCGDLGV------------------ARKVFDGMPERN-EVSWSALMAGYGV 187
Query: 203 --------KFEKRVVSAGHDAD 216
+ +R+V G D
Sbjct: 188 HGMFGEVFRLFERMVEEGQKPD 209
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + TL +LL V + +++H K F+ + L+ +Y F + +
Sbjct: 275 MPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACA 334
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + ++ V+W ++I QNG E+ ++M G P+ ++L +C+ +
Sbjct: 335 VFEKIEVR-NVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMA 393
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ G+ +HA IR G+ DL+ +NAL++MYA+
Sbjct: 394 SLKTGKQIHAWSIRTGLMFDLFISNALIDMYAK 426
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + KT + L + L+ +Y F V S+ + + + V+W S I C G
Sbjct: 199 VHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPER-NEVSWNSAIGCFLNAG 257
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
L + L F M G P S+L + L F G VH I+ ++LD++ N
Sbjct: 258 LYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVAN 317
Query: 146 ALMNMYAQSQNMD 158
+L++MYA+ +++
Sbjct: 318 SLVDMYAKFGSLE 330
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 16/188 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+NLL + + KQ+HA +T F+ + L+ +Y + + + D
Sbjct: 381 TLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDL- 439
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V++ ++I +Q+ ESL F ++ G+ D F L +CT L F+ G
Sbjct: 440 -SEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQG 498
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFN 171
+ +H ++R + + N L+ +Y + +D I++R + G+G +
Sbjct: 499 KEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMH 558
Query: 172 GGREASVH 179
G +A+ H
Sbjct: 559 GQIDAAFH 566
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCCTQ 83
+LHA ++ F + L+ Y D+ + D + PA V +W S++
Sbjct: 97 ELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEM--PARDVVSWNSLVSSFLA 154
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N + ++ + M+ SGV + SV+ +C + + FG VH +++ G+D +
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
NAL++MY G G EAS+ +V + +PERN
Sbjct: 215 GNALVDMY-----------------GKFGHVEASM-KVFEGMPERN 242
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
P W ++R ++ LL E++ +V MI G+ PD+ FP++LK+ L D G+ +HA
Sbjct: 62 PEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHA 121
Query: 131 CIIRLGVDLDLYT-NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ + G +D T N L+N+Y + + FG +V++V D+I ERN
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGD-----------FG-------AVYKVFDRISERN 163
Query: 190 GNVELSSGLAGCNKFEK 206
V +S ++ FEK
Sbjct: 164 -QVSWNSLISSLCSFEK 179
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + E NS F+I+ L+ +Y + S LL + V W +++
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGG-RDLVTWNTVLSSLC 278
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QN L+E+L M+ GV PD SVL +C+ L R G+ +HA ++ G +D +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338
Query: 142 YTNNALMNMY 151
+ +AL++MY
Sbjct: 339 FVGSALVDMY 348
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K+LHA K +L+ NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 321 GKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL-WNAMIAG 378
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+QN E+L F+ M S G+ + V+ +C F E++H +++ G+D
Sbjct: 379 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 438
Query: 140 DLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
D + N LM+MY++ +D M I+ + +
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKME 467
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK I ++ +++ + K + ++ + ++ Y + + D+ + D + +
Sbjct: 125 LLKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEM-SYR 183
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W +++ C N L +S FV+M GSG PD +L +C+ L + FG VH
Sbjct: 184 TVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVH 243
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
+ +I G+ ++ AL++MYA+
Sbjct: 244 SQVIEKGMVVNCRLGTALVDMYAK 267
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 53 NLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
NL H + L + K+ +W +IR E++ ++ M G+ PD FP +
Sbjct: 68 NLNHARVLLSGSEKSEVS--SWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPIL 125
Query: 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
LK+C + F G + +++ G+D ++Y N +++ Y + +
Sbjct: 126 LKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRI 170
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL++ ++ K KQLHAQ+ + ++L+ +Y + + + L D + P
Sbjct: 80 SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFD--RIP 137
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+ W +IR NG ++ + +M G+ PD+ FP VLK+C L G
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+H +++ G + D++ AL++MYA+ G S EV DKI
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKC------------------GCVGSAREVFDKILV 239
Query: 188 RNGNVELS 195
R+ + +S
Sbjct: 240 RDAVLVVS 247
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
P W ++R ++ LL E++ +V MI G+ PD+ FP++LK+ L D G+ +HA
Sbjct: 62 PEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHA 121
Query: 131 CIIRLGVDLDLYT-NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ + G +D T N L+N+Y + + FG +V++V D+I ERN
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGD-----------FG-------AVYKVFDRISERN 163
Query: 190 GNVELSSGLAGCNKFEK 206
V +S ++ FEK
Sbjct: 164 -QVSWNSLISSLCSFEK 179
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + E NS F+I+ L+ +Y + S LL + V W +++
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGG-RDLVTWNTVLSSLC 278
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QN L+E+L M+ GV PD SVL +C+ L R G+ +HA ++ G +D +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338
Query: 142 YTNNALMNMY 151
+ +AL++MY
Sbjct: 339 FVGSALVDMY 348
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K+LHA K +L+ NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 321 GKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL-WNAMIAG 378
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+QN E+L F+ M S G+ + V+ +C F E++H +++ G+D
Sbjct: 379 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 438
Query: 140 DLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
D + N LM+MY++ +D M I+ + +
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKME 467
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNN--FNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ +QLHA KT N F+ SRLL +Y++ N + + + D ++ + + W +II
Sbjct: 27 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSL-IHWNTII 85
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+C +N + + F ++ PD+ P V+K C L + G+ +H +++G
Sbjct: 86 KCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144
Query: 139 LDLYTNNALMNMYAQSQNMD--MHIYDRF------------QGFGFNGGREASVHEVLDK 184
D++ +L+NMY++ +D ++D G+ G + ++ ++ ++
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIAL-QLFEE 203
Query: 185 IPERNG--NVELSSGLAGCNKFE 205
+PER+ L GL+ C K E
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVE 226
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I NG ++++ F M+ G P H SVL + + L G +H+
Sbjct: 272 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G +LD +L+ MYA+
Sbjct: 332 MEKNGFELDGILGTSLIEMYAK 353
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 8/138 (5%)
Query: 29 QIFKTLEPNSR----FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q++K L N FLI+ LL +Y FNL+ ++L L D + V+W ++I +
Sbjct: 78 QVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALTLFDQM-PERNVVSWTTMISAFSNA 136
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L ++L + M+ GV P+ + S+L++C + + R +H II+ G+D D+Y
Sbjct: 137 KLNDKALEFLICMLREGVKPNVYTYSSILRACDGVYNLR---QLHGNIIKSGLDSDVYVR 193
Query: 145 NALMNMYAQSQNMDMHIY 162
+AL+++Y++ + +Y
Sbjct: 194 SALIDIYSKWGESENALY 211
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH I K+ + ++ S L+ IY+ + ++L + + + T + W SII Q
Sbjct: 175 RQLHGNIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVT-GDLIVWNSIIAGFAQ 233
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L F M +G + + SVL++CT L G VH + + D DL
Sbjct: 234 NNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVHVHVFKH--DQDLVL 291
Query: 144 NNALMNMYAQSQNMD 158
NNAL++MY + +++
Sbjct: 292 NNALLDMYCKCGSLE 306
>gi|48716412|dbj|BAD23021.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|50251414|dbj|BAD28452.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 727
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCCTQN 84
+HA + KT + + LL +Y + L + P VA W S+I C +
Sbjct: 150 IHAYLLKTPASIHTPVANSLLSLYATLGDFASAAILFGEM--PDRDVASWTSMIGACLGS 207
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ++L F M+ G + PD V VL++C +L D R G SVHA R G+ DL+
Sbjct: 208 GYADQALRLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFV 267
Query: 144 NNALMNMYAQSQNM 157
+N+L++MYA+ ++
Sbjct: 268 DNSLVDMYAKCLDL 281
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97
S L++ LL Y LV D L L ++ + W ++I C N ++ CFV M
Sbjct: 363 SMALLNALLDAYGKCGLVEDVLRLFQGMRE-RNVITWSTVIAACAHNARPHAAMACFVAM 421
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +G P+ S++++C + H +R G+ +L NAL++MY +
Sbjct: 422 LVTGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGK 477
>gi|222623987|gb|EEE58119.1| hypothetical protein OsJ_09011 [Oryza sativa Japonica Group]
Length = 1112
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCCTQN 84
+HA + KT + + LL +Y + L + P VA W S+I C +
Sbjct: 150 IHAYLLKTPASIHTPVANSLLSLYATLGDFASAAILFGEM--PDRDVASWTSMIGACLGS 207
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ++L F M+ G + PD V VL++C +L D R G SVHA R G+ DL+
Sbjct: 208 GYADQALRLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFV 267
Query: 144 NNALMNMYAQSQNM 157
+N+L++MYA+ ++
Sbjct: 268 DNSLVDMYAKCLDL 281
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97
S L++ LL Y LV D L L ++ + W ++I C N ++ CFV M
Sbjct: 363 SMALLNALLDAYGKCGLVEDVLRLFQGMRE-RNVITWSTVIAACAHNARPHAAMACFVAM 421
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +G P+ S++++C + H +R G+ +L NAL++MY +
Sbjct: 422 LVTGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGK 477
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S ++H +I K + + + LL +Y + D+ + D + VAW +++
Sbjct: 118 SVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVR-DLVAWSTLVSS 176
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C +NG +V++L F M+ GV PD SV++ C L R SVH I R DLD
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLD 236
Query: 141 LYTNNALMNMYAQSQNM 157
N+L+ MY++ ++
Sbjct: 237 ETLCNSLLTMYSKCGDL 253
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL ++L + I + K +H + + L+PN L L+ +Y + D +L
Sbjct: 305 TLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRV 364
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + VAW S+I G+++++L F +M+ + PD S + +C
Sbjct: 365 V-SDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPL 423
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +IR V D + N+L++MY++S ++D
Sbjct: 424 GKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVD 456
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + +T + + F+ + L+ +Y+ V + + + +K + V W S++ +
Sbjct: 424 GKQIHGHVIRT-DVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSV-VTWNSMLCGFS 481
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG VE+++ F M S + + F +V+++C+ + G+ VH +I G+ DL+
Sbjct: 482 QNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLF 540
Query: 143 TNNALMNMYAQSQNMD 158
T+ AL++MYA+ +++
Sbjct: 541 TDTALIDMYAKCGDLN 556
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+I++++ + A+ +H QI + + L + LL +Y+ + S + + +
Sbjct: 204 TMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKI 263
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I + ++L F MI SG+ P+ SVL SC L+ R G
Sbjct: 264 -AKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREG 322
Query: 126 ESVHACIIRLGVDLDLYT-NNALMNMYAQ 153
+SVH +R +D + + + AL+ +YA+
Sbjct: 323 KSVHGFAVRRELDPNYESLSLALVELYAE 351
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 25 QLHAQIFKTLEPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
QLHA + T L +++L+ Y S + + P + +I+C
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYP-DSFMYGVLIKCNVW 77
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLDLY 142
LL ++ + R++ VFPSVL++C + G VH II+ GVD D
Sbjct: 78 CHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAV 137
Query: 143 TNNALMNMYAQSQNM 157
+L+ MY Q+ N+
Sbjct: 138 IETSLLCMYGQTGNL 152
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 65 LKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
L+ P+P ++ W SIIR ++ S++ FV+M+ GV PDH +P V K+ L + R
Sbjct: 63 LQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELR 122
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFG 169
+VH I + G+ D + N+L++MY ++ ++D G+
Sbjct: 123 LALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYA 182
Query: 170 FNGGREASVHEVLDKIPERNGNVELSSGLAGCNK 203
G + S H+V +P+R+ V SS + GC K
Sbjct: 183 KCGDLD-SAHQVFXSMPDRD-VVSWSSMIDGCVK 214
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C + G +L F RM G + SVL +C L G +H
Sbjct: 203 VSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQY 262
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ + L +LM+MYA+
Sbjct: 263 MVDNTMRFTLVLRTSLMDMYAK 284
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ L+ +L+ VS S Q+H + + L L +RL+ +Y D++ +
Sbjct: 40 RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99
Query: 64 TLKTPAPPVA--WKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKSCTLL 119
+L A A W +IR T G +L +++M S PD + FP V+KSC L
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G VH LG+D D++ +AL+ MYA NGG
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKMYA------------------NGGLLWDAR 201
Query: 180 EVLDKIPERN 189
+V D + ER+
Sbjct: 202 QVFDGMAERD 211
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 17/212 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++LL + +Q K+LH I + FL+S L+ IY V + + D+
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V ++I NG+ E++ F ++ G+ P+ SVL +C + + G
Sbjct: 410 KA-IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLG 468
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQG------------FGFN 171
+ +H+ ++ + Y +ALM+MYA+ +D+ +I+ + F N
Sbjct: 469 QELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQN 528
Query: 172 GGREASVHEVLDKIPE--RNGNVELSSGLAGC 201
G E +++ + E + NV +SS L+ C
Sbjct: 529 GEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ ++L S+ ++LH+ K ++ S L+ +Y + S + +
Sbjct: 451 AIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKI 510
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I QNG E+L F M GV + SVL +C L +G
Sbjct: 511 -SAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H +I+ + DL+ +AL++MY + N++ H V + +
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW------------------AHRVFESM 611
Query: 186 PERN 189
PE+N
Sbjct: 612 PEKN 615
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I C QNG + ++L F M SG+ PD S+L + T L F G+ +H
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373
Query: 132 IIRLGVDLDLYTNNALMNMY--AQSQNMDMHIYD 163
I+R V +D++ +AL+++Y ++ M +YD
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYD 407
>gi|357453201|ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240912|gb|ABD32770.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485925|gb|AES67128.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL S K + K +HA+ + + F+ ++L+ Y + + +H + +L +
Sbjct: 13 TLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQA-NILFSFTNR 71
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P + S+IR L E+L+ F M S D + P VLKSC L R G+ V
Sbjct: 72 KPTFLYNSLIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQV 131
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYD------------RFQGFGFNGGR 174
H ++ G LDL +NAL+NMYA+ ++ ++D FG + GR
Sbjct: 132 HGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMADFGMH-GR 190
Query: 175 EASVHEVLDK---IPERNGNVELSSGLAGCN 202
V E+ ++ + ER +V + L C+
Sbjct: 191 FEEVFEMFNRMVEVGERMDSVSFTVVLTACS 221
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I TQNG +++L F+ M G PD + F L SC L + G+ +H
Sbjct: 420 VSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQL 479
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+++ G DL+ +NAL+ MYA+
Sbjct: 480 VMKSGYATDLFVSNALITMYAK 501
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH + K+ F+ + L+ +Y + + L + V+W S+I
Sbjct: 473 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDH-FDVVSWNSLIAAYA 531
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
NG E+L F +M GV PD F +L +C+ + G + C+++
Sbjct: 532 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQ 583
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 14 PVSIKTKSQ-------AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
P +IK+ S+ QLHA+ K ++ +++ LL +Y +HD+ D ++
Sbjct: 78 PFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMR 137
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P V+W ++I G +E++ SGV PD VL +C + D GE
Sbjct: 138 QPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGE 197
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
V + G+ +++ A +++Y + MD
Sbjct: 198 EVWTAAEKEGIAGNVFVATAAVDLYVKCGEMD 229
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 6 TLINLLK----NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
TL+ +L +P S + A +HA++ K L P+ L + L+ Y L H +L L
Sbjct: 103 TLLTVLSACADSPSSPLARRLALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQL 161
Query: 62 LDTLKT-----------------------------PAP-PVAWKSIIRCCTQNGLLVESL 91
D + PAP V+W ++I C +NG E++
Sbjct: 162 FDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAI 221
Query: 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
CF M+ GV PD+ +V+ +C + G VH ++R G++ ++ N+L++MY
Sbjct: 222 DCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMY 281
Query: 152 AQSQNMDM 159
A+ +++
Sbjct: 282 ARCGQVEL 289
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL++ ++ K KQLHAQ+ + ++L+ +Y + + + L D + P
Sbjct: 80 SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFD--RIP 137
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+ W +IR NG ++ + +M G+ PD+ FP VLK+C L G
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+H +++ G + D++ AL++MYA+ G S EV DKI
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKC------------------GCVGSAREVFDKILV 239
Query: 188 RNG 190
R+
Sbjct: 240 RDA 242
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 10/146 (6%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-----NNFNLVHDSLCLLDTLKTPAPPV 72
KT + KQLHA KT + + S LL +Y NN V L + + ++ PA V
Sbjct: 19 KTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYV---LSIFNKIQEPAL-V 74
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+ +I+C QN L +++T F +++ PD P V+K C L + G+ +H +
Sbjct: 75 LYNILIKCYIQNQLSHDAITLFSQLLHE-FNPDGFTLPCVIKGCARLHATKEGKQIHGLV 133
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
++LG L+ + +++L+NMY++ +++D
Sbjct: 134 LKLGFGLNKFVSSSLVNMYSKCKDID 159
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S++ N E+L F+ M+ P+H S + + L G+ +H+
Sbjct: 267 ISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSY 326
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G LD +L+NMY++ N++
Sbjct: 327 MVKNGFQLDGVLATSLINMYSKCGNIE 353
>gi|218193846|gb|EEC76273.1| hypothetical protein OsI_13747 [Oryza sativa Indica Group]
Length = 602
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ L+ +L+ VS S Q+H + + L L +RL+ +Y D++ +
Sbjct: 40 RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99
Query: 64 TLKTPAPPVA--WKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKSCTLL 119
+L A A W +IR T G +L +++M S PD + FP V+KSC L
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G VH LG+D D++ +AL+ MYA NGG
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKMYA------------------NGGLLWDAR 201
Query: 180 EVLDKIPERN 189
+V D + ER+
Sbjct: 202 QVFDGMAERD 211
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 17/212 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++LL + +Q K+LH I + FL+S L+ IY V + + D+
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V ++I NG+ E++ F ++ G+ P+ SVL +C + + G
Sbjct: 410 KA-IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLG 468
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQG------------FGFN 171
+ +H+ ++ + Y +ALM+MYA+ +D+ +I+ + F N
Sbjct: 469 QELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQN 528
Query: 172 GGREASVHEVLDKIPE--RNGNVELSSGLAGC 201
G E +++ + E + NV +SS L+ C
Sbjct: 529 GEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I C QNG + ++L F M SG+ PD S+L + T L F G+ +H
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373
Query: 132 IIRLGVDLDLYTNNALMNMY--AQSQNMDMHIYD 163
I+R V +D++ +AL+++Y ++ M +YD
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYD 407
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ ++L S+ ++LH+ K ++ S L+ +Y + S + +
Sbjct: 451 AIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKI 510
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I QNG E+L F M GV + SVL +C L +G
Sbjct: 511 -SAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569
Query: 126 ESVHACIIRLGVDLDL 141
+ +H +I+ + DL
Sbjct: 570 KEIHGVVIKGPIRADL 585
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+LH I KT + S +L +Y + D C + T + W S+I C+
Sbjct: 380 GKELHGSIIKTKLDEKCHVGSAILDMYAKCGRL-DLACRVFNRITEKDAICWNSMITSCS 438
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG E++ F +M G D L +C L +G+ +H +I+ + DLY
Sbjct: 439 QNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLY 498
Query: 143 TNNALMNMYAQSQNMDM--HIYDRFQ 166
++L++MYA+ N++ ++DR Q
Sbjct: 499 AESSLIDMYAKCGNLNFSRRVFDRMQ 524
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y+ + + L DTL + V+W II QNGL+ E+ F MI +G+ P
Sbjct: 200 LLAMYSKCQCLQAARKLFDTLPQ-SDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKP 258
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
D F S L L+ + + +H IIR V LD++ +AL+++Y + ++++M
Sbjct: 259 DSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEM 313
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW +IR T G +L +++M+G+GV PD FP V+K+C L + G+ VH +
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
+G+ D++ ++L+ +YA++ ++
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHL 109
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++K +K+ K +H + F+ S L+ +Y + D+ L D +
Sbjct: 60 TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ +NG ++ F+ M S + P+ F VL C G
Sbjct: 120 PQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
+H + G++LD N L+ MY++ Q
Sbjct: 179 TQLHGIAVGCGLELDSPVANTLLAMYSKCQ 208
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++H + K + + S L+ +Y ++ S + D ++ V+W SII
Sbjct: 481 GKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNE-VSWNSIISAYG 539
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L E L F M+ +G+ PDH F ++ +C
Sbjct: 540 NHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573
>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 768
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HAQ K+ + + L+ +Y+ V D L + ++ +W SII
Sbjct: 165 GRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDK-DLFSWGSIIAGLA 223
Query: 83 QNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLD 140
Q G +++L F MI G++ P+ F SV ++C+++++ +GE +H ++ +D +
Sbjct: 224 QQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRN 283
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRFQ 166
Y +L +MYA+ +D M ++ R +
Sbjct: 284 SYAGCSLGDMYARCNKLDSAMKVFYRIE 311
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V I + +Q+H K + + L +Y N + ++ + +++P V+W
Sbjct: 260 VVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESP-DLVSW 318
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I + +GLL E++ F M S + PD ++L +C R G S+H+ +++
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVK 378
Query: 135 LGVDLDLYTNNALMNMYAQ 153
LG+ D+ N+L++MY +
Sbjct: 379 LGLGGDVMVCNSLISMYTR 397
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
PV+W ++I QN +++ F M+ G PD S +++C L D G VHA
Sbjct: 111 PVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHA 170
Query: 131 CIIRLGVDLDLYTNNALMNMYAQS 154
I+ L NAL+ MY++S
Sbjct: 171 QAIKSDNGGHLIVQNALVTMYSKS 194
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L N+L + AKQ+HA FK + L + L+ Y + D+ L + +
Sbjct: 453 SLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIM 512
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T +W S+I Q G E+L F RM GV P+H F VL +C+
Sbjct: 513 GTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACS 564
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W SI+ C Q+ + + F + S D +VL + L F + VHA
Sbjct: 417 VTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAY 476
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
++G+ D +NAL++ YA+ ++D
Sbjct: 477 AFKVGLVSDAILSNALIDTYAKCGSLD 503
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+LH I KT + S +L +Y + D C + T + W S+I C+
Sbjct: 380 GKELHGSIIKTKLDEKCHVGSAILDMYAKCGRL-DLACRVFNRITEKDAICWNSMITSCS 438
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG E++ F +M G D L +C L +G+ +H +I+ + DLY
Sbjct: 439 QNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLY 498
Query: 143 TNNALMNMYAQSQNMDM--HIYDRFQ 166
++L++MYA+ N++ ++DR Q
Sbjct: 499 AESSLIDMYAKCGNLNFSRRVFDRMQ 524
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y+ + + L DT + V+W II QNGL+ E+ F MI +G+ P
Sbjct: 200 LLAMYSKCQCLQAARKLFDT-SPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKP 258
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
D F S L L+ + + +H IIR V LD++ +AL+++Y + ++++M
Sbjct: 259 DSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEM 313
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW +IR T G +L +++M+G+GV PD FP V+K+C L + G+ VH +
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
+G+ D++ ++L+ +YA++ ++
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHL 109
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++K +K+ K +H + F+ S L+ +Y + D+ L D +
Sbjct: 60 TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ +NG ++ F+ M S + P+ F VL C G
Sbjct: 120 PQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
+H + G++LD N L+ MY++ Q
Sbjct: 179 TQLHGIAVSCGLELDSPVANTLLAMYSKCQ 208
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++H + K + + S L+ +Y ++ S + D ++ V+W SII
Sbjct: 481 GKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQE-RNEVSWNSIISAYG 539
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+G L E L F M+ +G+ PDH F ++ +C
Sbjct: 540 NHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573
>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Vitis vinifera]
Length = 708
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 17 IKTKSQ--AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
+T++Q +Q+H I K+ + ++ S LL Y F L+ DS + ++ V+W
Sbjct: 372 FRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVER-LDLVSW 430
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I G E++ R+ +G PD +F S+ C + +R +SVH+ +++
Sbjct: 431 GAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVK 490
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
+G + ++ +A+++ YA+ +++
Sbjct: 491 MGYEAHVFVASAVIDAYAKCGDIE 514
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++ QNG L ++ MI +G+ P+ V K+C L G VH
Sbjct: 24 VSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGKELGLCVHCF 83
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++G++ + + ++++NMYA+ +++
Sbjct: 84 ALKVGMEKNPFVGSSILNMYAKLGDIE 110
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 3/157 (1%)
Query: 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP 71
K ++ K +H K + F+ S +L +Y + D+ + + +
Sbjct: 66 KACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMDNLVVG 125
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
W ++I Q ESL M G+ D F + LK C ++ + FG +H
Sbjct: 126 -CWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQIHGL 184
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQN--MDMHIYDRFQ 166
II+ V N+LM+MY ++ + ++DR Q
Sbjct: 185 IIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQ 221
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T IN LK + + + +Q+H I ++ S +++ L+ +Y +L + D L
Sbjct: 161 TFINALKGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRL 220
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++ +Q E F +++ +G+ P+ F + + C +D G
Sbjct: 221 QDK-DIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSG 279
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
H R G+ + ++L+NM+++ M M
Sbjct: 280 LQFHCLAFRFGISDEASVTSSLINMFSRCGAMRM 313
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 14 PVSIKTKSQAKQ------LHAQIFKTLEPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK 66
PV++K + ++ +H + K + S + S L+++Y + ++L + D L+
Sbjct: 64 PVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V W S++ +NG +++ F RM+ S V PD +++ +CT L + R G
Sbjct: 124 KP-DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLG 182
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
VH +IR G DL N+L+N YA+S+
Sbjct: 183 RCVHGFVIRRGFSNDLSLVNSLLNCYAKSR 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI L+ + + +H + + N L++ LL Y +++ L +
Sbjct: 165 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 224
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I C QNG E+L F M+ G P+ VL++C D G
Sbjct: 225 -AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 283
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDR------------FQGFGFN 171
H IR G++ ++ + AL++MY + S ++ R GF N
Sbjct: 284 RKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLN 343
Query: 172 GGREASVHEVLDKIPERN 189
G S+ E + E N
Sbjct: 344 GMAHRSIEEFSIMLLENN 361
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++++ ++ E L F M PD+ P LK+C L + +GE +H +
Sbjct: 28 WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVK 87
Query: 134 R-LGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
+ + + DLY ++L+ MY + M + ++D +
Sbjct: 88 KDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I T NG+ S+ F + ++ + PD + VL SC+ L + H+
Sbjct: 331 VSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHS 390
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ G D + + +L+ +Y++
Sbjct: 391 YVIKYGFDSNPFIGASLVELYSR 413
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPPVAWKSIIRC 80
+ + LHA+I KT +S ++ + L +Y N + +L L D++ V+W S+I
Sbjct: 29 KGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINA 88
Query: 81 CTQNGLLVE---SLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+QN +++ F RM+ + V P+ + V + + L D G+ H+ ++ G
Sbjct: 89 FSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTG 148
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVEL 194
D+Y ++L+NMY ++ GF F+ ++ D++PERN +
Sbjct: 149 CSGDVYVGSSLLNMYCKT------------GFVFDA------RKLFDRMPERNTVSWATM 190
Query: 195 SSGLAGCNKFEKRV 208
SG A + +K V
Sbjct: 191 ISGYASSDIADKAV 204
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S TL+ ++ + + KQ+H+ FK +++S ++ +Y + D+
Sbjct: 317 LPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARK 376
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ ++ P V W SII QNG L + +M V P+ SVL++C+ L
Sbjct: 377 GFECVQQP-DVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLA 435
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +HA II+ G L++ +AL MY + ++D
Sbjct: 436 ALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLD 473
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W +++ Q G ++L F +M SGV P V+ +C+ L G+ +H+
Sbjct: 286 ITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSF 345
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+LG L LY +A+++MYA+
Sbjct: 346 AFKLGFGLQLYVLSAVVDMYAK 367
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L+ S+ Q KQ+HA+I K + S L +Y + D +
Sbjct: 423 TMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIF--W 480
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ P+ V +W ++I +QNG ++L F +M+ G+ PD F ++L +C+
Sbjct: 481 RMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACS 533
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + ++ KQ H+ KT ++ S LL +Y V D+ L D +
Sbjct: 120 TLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRM 179
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I + + +++ F M + SVL + T V G
Sbjct: 180 P-ERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTG 238
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA 176
VH+ I+ G+ + NAL+ MYA+ ++D D + F F+G + +
Sbjct: 239 RQVHSLAIKNGLLAIVSVANALVTMYAKCGSLD----DAVRTFEFSGDKNS 285
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK+LHA + + + S F+ RL+ +Y + V S D ++ W S+I
Sbjct: 92 AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRK-DVYTWNSMISAYV 150
Query: 83 QNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+NG E++ CF +++ + D FP VLK+C LVD G +H + +LG D+
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDV 207
Query: 142 YTNNALMNMYAQ 153
+ +L++MY++
Sbjct: 208 FVAASLIHMYSR 219
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKS 76
+T +++H +FK F+ + L+ +Y+ F V + L D + P + +W +
Sbjct: 186 QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM--PFRDMGSWNA 243
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I QNG ++L M G+ D S+L C L D +H +I+ G
Sbjct: 244 MISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHG 303
Query: 137 VDLDLYTNNALMNMYAQSQNM 157
++ +L+ +NAL+NMYA+ N+
Sbjct: 304 LEFELFVSNALINMYAKFGNL 324
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++H + KT F+ + L+ +Y + D++CL +
Sbjct: 479 TWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQV 538
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V W +II C +G ++L F M GV PDH F S+L +C+
Sbjct: 539 PRESS-VPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACS 589
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L + S A +H + K F+ + L+ +Y F + D+ + +
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII QN V + F +M +G+ PD S+ D++
Sbjct: 335 FL-RDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNS 393
Query: 126 ESVHACIIRLGVDLD-LYTNNALMNMYAQ 153
SVH I+R G ++ + NA+M+MYA+
Sbjct: 394 RSVHGFIMRRGWLMEAVVIGNAVMDMYAK 422
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K +H Q K S F+I+ L +YN + L + ++ P V+W ++I
Sbjct: 243 HGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMP-DVVSWTTLISTY 301
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G ++ F RM S V P+ F +V+ SC L ++GE +H ++RLG+ L
Sbjct: 302 VQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNAL 361
Query: 142 YTNNALMNMYAQ 153
N+++ +Y++
Sbjct: 362 SVANSIITLYSK 373
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++ + ++ +Q+H + + N+ + + ++ +Y+ L+ + + +
Sbjct: 328 TFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGI 387
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W +II +Q G E+ M G P+ SVL C + G
Sbjct: 388 -TRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQG 446
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VHA ++ +G+D + ++A+++MY++ ++ + FNG + +++++
Sbjct: 447 KQVHAHLLCIGIDHEAMVHSAIISMYSKCGSV------QEASKIFNGMK---INDIISWT 497
Query: 186 PERNGNVELSSGLAGCNKFEK 206
NG E N FEK
Sbjct: 498 AMINGYAEHGYSQEAINLFEK 518
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH K+ +S F+ S L+ +Y + + + + T V+W +II G
Sbjct: 146 LHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR-NVVSWTAIIAGLVHAG 204
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+E L F M S V D + F LK+ G+++H I+ G D + N
Sbjct: 205 YNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 264
Query: 146 ALMNMYAQSQNMD--MHIYDRFQ 166
L MY + D M ++++ +
Sbjct: 265 TLATMYNKCGKPDYVMRLFEKMR 287
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 18/180 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA + + + S ++ +Y+ V ++ + + +K ++W ++I
Sbjct: 445 QGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKIN-DIISWTAMINGY 503
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++G E++ F ++ G+ PD+ +F VL +C HA + VDL
Sbjct: 504 AEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACN-----------HAGM----VDLGF 548
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
Y + N+Y S + + Y GR + ++ +P +V S+ L C
Sbjct: 549 YYFMLMTNVYRISPSKEH--YGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRAC 606
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I E+L F M + G D + LK+C L V+ FG
Sbjct: 84 THRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFG 143
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
E +H ++ G+ ++ ++AL++MY
Sbjct: 144 ELLHGFSVKSGLIHSVFVSSALIDMY 169
>gi|297735091|emb|CBI17453.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIR 79
+Q KQ+HA IF+ F++++LL ++ D L + P P W ++IR
Sbjct: 53 NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIR 112
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVD 138
G +ES+ + M G+ P F ++LK+C+ +D G VH I + G
Sbjct: 113 GYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFG 172
Query: 139 LDLYTNNALMNMYAQ 153
DLY N L++MY +
Sbjct: 173 SDLYVGNTLIDMYVK 187
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
T+ +LL S+ + KQLH+ + K LL +Y + HD L
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D V W ++ Q L +S F +M +G++P+ +P +L++CT
Sbjct: 307 DRTNV----VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +H+ I+ G + D+Y + L++MY++ + +D
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ K + ++ L+ +Y+ + + + +L+ L+ V+W S+I
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIAGYV 423
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ E+L F M GV+PD+ S +C + R G +HA + G D+
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS 483
Query: 143 TNNALMNMYAQ 153
N L+N+YA+
Sbjct: 484 IWNTLVNLYAR 494
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAW 74
K +Q + +HAQ++K + F+ + L+ +Y +F L C D L V +
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC--DML--FCDRVTF 213
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I Q G +L F M SG+ PD S+L +C + D + G+ +H+ +++
Sbjct: 214 NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK 273
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G+ D T +L+++Y + +++
Sbjct: 274 AGMSFDYITEGSLLDLYVKCGDIE 297
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ I+ L N IK Q KQ+H + KT + + + L+ +Y + D+ + +
Sbjct: 553 SAISALANLADIK---QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEM 609
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 610 -SLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
IK Q Q+HA+++ + + + L+ +Y ++ L + + W
Sbjct: 460 IKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNG 518
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I Q+ L ++L F++M +G + F S + + L D + G+ VH ++ G
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+ NAL+++Y + +++
Sbjct: 579 HTSETEVANALISLYGKCGSIE 600
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ Q GL E+ + +M + V P V SVL +CT F G +HA
Sbjct: 110 VSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQ 169
Query: 132 IIRLGVDLDLYTNNALMNMY 151
+ + + + NAL+ +Y
Sbjct: 170 VYKQAFCSETFVGNALIALY 189
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+++ + + + K +H Q+ +L++++L +Y + D LC L
Sbjct: 76 SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL-DDLCYARKLFEE 134
Query: 69 APP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P AW ++I + +E L + RM GSG + D FPSV+K+C + D
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + +++ G++ +L+ AL++ YA+ MD
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMD 227
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K ++++ +QL + + K + F+ L+ Y F + D++ LD +
Sbjct: 177 TFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V W ++I + E+ F RM+ GV PD+ F S L+ C L G
Sbjct: 237 EGTSV-VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 295
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ VH+ +I G D + NAL++MYA+ + E S +V D++
Sbjct: 296 KQVHSKLIACGFKGDTFVGNALIDMYAKCDD------------------EESCLKVFDEM 337
Query: 186 PERN 189
ERN
Sbjct: 338 GERN 341
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 19/198 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ L N + +Q +Q+HA + + + + + L+ +Y+ ++ + + + +
Sbjct: 484 TLLTLCANQ---RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+W S+I QNG E+L F +M +G+ PD S+L SC L D + G
Sbjct: 541 -AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG 599
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFN 171
+H I+R ++ + L++MYA+ +MD +YD+ F N
Sbjct: 600 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAF-VN 658
Query: 172 GGREASVHEVLDKIPERN 189
GR + D++ +RN
Sbjct: 659 SGRANDAKNLFDQMEQRN 676
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ +++++ KQ+H+++ F+ + L+ +Y + L + D +
Sbjct: 278 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W SII Q G ++L F+RM SG + S+L + L D G
Sbjct: 338 -GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H ++R ++ D+ +AL++MY++ G H+V +
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKC------------------GMVEEAHQVFRSL 438
Query: 186 PERNGNVELSSGLAG 200
ERN V ++ LAG
Sbjct: 439 LERN-EVSYNALLAG 452
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ ++LH + + L + L S L+ +Y+ +V ++ + +L V++ +++
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGY 453
Query: 82 TQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q G E+L + M G+ PD F ++L C + G +HA +IR + +
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 513
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+ L++MY++ GR E+ +++ ERN
Sbjct: 514 IIVETELVHMYSEC------------------GRLNYAKEIFNRMAERNA 545
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ ++ S+ QLH+ I K N S L + L+ +Y+ + + + D
Sbjct: 714 TMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDN 773
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +++G E+L + M G+YP+ F ++L +C+
Sbjct: 774 MNGK-NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 825
>gi|302755170|ref|XP_002961009.1| hypothetical protein SELMODRAFT_24718 [Selaginella moellendorffii]
gi|300171948|gb|EFJ38548.1| hypothetical protein SELMODRAFT_24718 [Selaginella moellendorffii]
Length = 296
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN--NFNLVHDSLCLLDTLK 66
L+++ S + +A+Q+HA+I P R+L + L+ +Y N D L
Sbjct: 4 QLIRSCGSERNLDRARQIHARIIAADYPLDRYLNNLLVEMYGKCGGNGRLDEARDLFERM 63
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
VAW +II QNG +++ F M GV PD + + SVL +C + G
Sbjct: 64 PRRDVVAWSAIIAANAQNGRGWQAIRLFRLMDLDGVRPDISTYASVLDACAGVGSLGLGR 123
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
HA + GV +D+ AL+NMY +
Sbjct: 124 LAHADAVHAGVHVDVVVAGALVNMYGK 150
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + A V W +I Q+GL+ ESLT F MI SGV PD F S+L S + + +
Sbjct: 299 MMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEY 358
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H I+R + LD++ +AL++ Y + + + M
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM 393
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
Q KQ+HA + + R+L +Y +F+ LD ++ P W SII
Sbjct: 53 QGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRP--WNSII 110
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+NGLL ++L + +M+ GV PD + FP ++K+C L +F+ + + + LG+D
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170
Query: 139 LDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ + ++L+ Y + +D+ ++DR
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFDR 198
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C Q+ ++ F +M SG+ D + L +C L FG+++H
Sbjct: 508 VSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGF 567
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+I+ + D+Y+ + L++MYA+ N+
Sbjct: 568 MIKHSLASDVYSESTLIDMYAKCGNL 593
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL + + KQ+H I + FL S L+ Y V + +
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC 401
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V + ++I NGL ++SL F ++ + P+ S+L +L+ + G
Sbjct: 402 NS-VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLG 460
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ 166
+H II+ G D A+++MYA+ M++ I++R
Sbjct: 461 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS 503
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ ++S K +H + K + + S L+ +Y + ++ + T+K V+W S
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNI-VSWNS 613
Query: 77 IIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFG 125
II C +G L +SL F M+ SG+ PD F ++ SC + D G
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL--CLLDTLKTPAPPVAWKSIIRCCT 82
Q+H Q+ K ++ +S LL Y LV+ + + D++ +P V W +++R +
Sbjct: 28 QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNT-VIWNTMLRAYS 86
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ +L + +M+ + V + FP +LK+C+ L F + +HA II+ G L++Y
Sbjct: 87 NSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVY 146
Query: 143 TNNALMNMYAQSQNMD 158
N+L+ +YA S N+
Sbjct: 147 ATNSLLRVYAISGNIQ 162
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ T+ G E+L + R++ +G+ PD FPSVL+SC +D G VHA +
Sbjct: 102 SWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHV 161
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+R D+D+ NAL+ MY + G S + DK+P R+
Sbjct: 162 VRFDFDMDVDVVNALITMYVKC------------------GDVVSARMLFDKMPTRD 200
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L++ + +++HA + + +++ L+ +Y V + L D +
Sbjct: 137 TFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKM 196
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I +N +E L F RM + PD SV+ +C LL D R G
Sbjct: 197 PTR-DRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLG 255
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+H+ ++R D ++ N+L+ MY
Sbjct: 256 TQLHSYVVRTAYDGNISVYNSLIQMY 281
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH+ + +T + + + L+ +Y + ++ + ++ V+W +II C N
Sbjct: 257 QLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR-DVVSWTTIISGCVDN 315
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L ++L + M +G PD SVL +C L G +H R G L +
Sbjct: 316 LLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVA 375
Query: 145 NALMNMYAQSQNMD 158
N+L++MY++ + ++
Sbjct: 376 NSLIDMYSKCKRIE 389
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S+I N E+L F +MI P+ S L +C + G+ +HA
Sbjct: 404 ISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAH 462
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ G+ D + NA++++Y + M
Sbjct: 463 ALKAGMGFDGFLPNAILDLYVRCGRM 488
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T ++LLK + + + +Q H KT + +++ L+ +Y + +
Sbjct: 123 TYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFG 182
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ V++ ++I ++ E+L F M G+ P SVL +C LL
Sbjct: 183 RVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALE 242
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
G +H + + G+D + N AL++MY + +++ I D FQG
Sbjct: 243 LGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAI-DVFQGM 286
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC----LLDTLKTPAPPVAWKSIIRC 80
QLHA K+ L++RLL + L + D + TP V + +++R
Sbjct: 37 QLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRG 96
Query: 81 CTQNG-LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
++ E+ RM+ GV PD F S+LK+C G H ++ G
Sbjct: 97 YARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAAD 156
Query: 140 DLYTNNALMNMYAQ 153
Y L+NMYA+
Sbjct: 157 HEYVLPTLINMYAE 170
>gi|255552163|ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543761|gb|EEF45289.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 463
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+L +L++ +S ++ + HA+I KT + P FL + L+ +Y+ +L + + +L
Sbjct: 8 SLAPILESAISTRSSFLGRATHARIIKTFQSPLPPFLSNHLISMYSKLDLPNSAQLVLHL 67
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK-SCTLLVDFR 123
T + V W S+I QNG +L F M + P+ FP K S +LL+ F
Sbjct: 68 TPTRSV-VTWTSLISGSVQNGHFSFALYHFFNMRRDNIQPNDFTFPCAFKASASLLLPF- 125
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G+ +HA ++ G D++ + +MY+++ G + ++ D
Sbjct: 126 VGKQIHAIAVKFGQINDVFVGCSAFDMYSKT------------------GLKQDAQKLFD 167
Query: 184 KIPERN 189
++PERN
Sbjct: 168 ELPERN 173
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH + ++ S +++ L+ Y V + + ++ V+W S++ C
Sbjct: 228 GRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLAEMVFGKMEN-RNAVSWCSMVAACE 286
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG ++ FV G+ P + SV+ +C L G S HA ++ ++ D++
Sbjct: 287 QNGEEEKACLFFVEGRKEGIEPTDYMVSSVISACAGLAGLELGRSFHALAVKACLEGDIF 346
Query: 143 TNNALMNMYAQSQNMD 158
+AL++MY + ++
Sbjct: 347 VGSALVDMYGKCGGIE 362
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA K + N F+ +Y+ L D+ L D L V W + I
Sbjct: 127 GKQIHAIAVKFGQINDVFVGCSAFDMYSKTGLKQDAQKLFDELPE-RNVVTWNAYISNAV 185
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G + FV + +G PD F +C + G +H +IR G + +
Sbjct: 186 LYGRYQNAAVAFVELRRAGCEPDSTTFCVFFNACADQLYVDLGRQLHGFVIRSGFEKSVS 245
Query: 143 TNNALMNMYAQSQNMDM 159
N L++ Y + + + +
Sbjct: 246 VLNGLIDFYGKCKEVRL 262
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH+ KT N F+ ++LL +Y+ + D+ + D + T +W +++R
Sbjct: 50 GKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKM-TLKNLHSWTAVLRLHL 108
Query: 83 QNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
GL + F + G G D VFP VL C L D G VH +++ G +
Sbjct: 109 NMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTN 168
Query: 141 LYTNNALMNMYAQSQNMD 158
+Y NAL++MY + ++D
Sbjct: 169 VYVGNALIDMYGKCGSLD 186
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 54 LVHDSLCLLDT-LKTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+V+++L LL+ L + P V W ++I + N VES+ F RM+G+GV PD
Sbjct: 215 VVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLA 274
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
SVL +C+ + G+ +H I+R + + + NAL+ MY + +M I+ +F
Sbjct: 275 SVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKF 331
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SI+ +N ++ F M S + PD +L +C+ L G+ VHA I
Sbjct: 510 WNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSI 569
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRF 165
R G D D + L++MYA+ ++ H Y +
Sbjct: 570 RAGYDSDAHIGATLVDMYAKCGSIK-HCYQVY 600
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I N + ++L F ++ G+ PD S+L + R G+ +H+
Sbjct: 372 ISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSI 431
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
I G+ + + AL+ MY + ++ + D+I ER+ +
Sbjct: 432 AIVKGLQSNSFVGGALVEMYCKCNDI------------------IAAQMAFDEISERDTS 473
Query: 192 V--ELSSGLAGCNKFEK 206
L SG A CN+ K
Sbjct: 474 TWNALISGYARCNQIGK 490
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 21/199 (10%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ T + KQ+HA + + + + L+ +Y + + + + P V +
Sbjct: 555 LATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNP-NLVCHNA 613
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ +G E + F RM+ S V PDH F SVL SC VHA I++G
Sbjct: 614 MLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSC-----------VHAGSIKIG 662
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSS 196
Y LM Y + + Y G+ ++++ +P +V S+
Sbjct: 663 -----YECFYLMETYNITPTLKH--YTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSA 715
Query: 197 GLAGCNKFEKRVVSAGHDA 215
L GC F + V+ G A
Sbjct: 716 LLGGC--FIHKEVALGEIA 732
>gi|297818196|ref|XP_002876981.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322819|gb|EFH53240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
S+ +++ Q H F L P+ FL++R + Y V D+ L + + +W
Sbjct: 75 SLVVQARKVQSHLVTFSPLPPS--FLLNRAIEAYGKCGCVDDARELFEQMPERDGG-SWN 131
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I C QNG+ E F RM GV F VLKSC L++D R +H +++
Sbjct: 132 AVITACAQNGVSDEVFRMFHRMNRDGVRATETSFAGVLKSCGLVLDLRLLMQLHCAVVKY 191
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G ++ +++++Y + Q M
Sbjct: 192 GYSGNIDLETSIVDVYGKCQVM 213
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + K + L + ++ +Y ++ D+ + D + P+ V+W I+R +
Sbjct: 183 QLHCAVVKYGYSGNIDLETSIVDVYGKCQVMSDARRVFDEIVNPSD-VSWNVIVRRYLEM 241
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F +M+ V P ++ SV+ +C+ + G+ +HA +++ V D +
Sbjct: 242 GFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKISVVADTVVS 301
Query: 145 NALMNMYAQSQNMD--MHIYDR------------FQGFGFNG-GREASVHEVLDKIPERN 189
++ +MY + ++ ++D+ G+ +G REA E+ D +PERN
Sbjct: 302 TSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGITREA--RELFDLMPERN 359
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L I KQ H I++ + + + LL +Y + + +
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +++ + G ++L+ F M P ++L C + G
Sbjct: 457 SELRDEVSWNALLTGVARVGRSEQALSFFEGMQMEA-KPSKYTLATLLAGCANIPALNLG 515
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+++H +IR G ++D+ A+++MY++ + D I
Sbjct: 516 KAIHGFLIRNGYNIDVVIRGAMVDMYSKCRCFDYAI 551
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ W SIIR C +NG E F+ + GV PDH F ++L++C
Sbjct: 563 ILWNSIIRGCCRNGRSKEVFELFMLLEDEGVKPDHVTFSAILQAC 607
>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
Length = 564
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTL-----KTP-APPVAWKSIIRCCTQNGLLVES 90
+RF LF+ +N ++ LLD + P V W ++I +NG L +
Sbjct: 145 GTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLKAA 204
Query: 91 LTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149
+ F M G V D +VF S L + L D FG S+H CII+ G +L+ NAL++
Sbjct: 205 ILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLD 264
Query: 150 MYAQSQNMD 158
MYA+S +++
Sbjct: 265 MYAKSGDLE 273
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT + F+ S L+++Y L+ SL L + +
Sbjct: 325 TFASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEI 384
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFR 123
+ VAW ++I Q+G ++ F RM SG+ P+H F +L +C+ LVD
Sbjct: 385 GYHSE-VAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDEG 443
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
E ++ G++ + +++MY ++ +D
Sbjct: 444 L-EYFYSMKDAHGIEPKEEHYSCIIDMYGRAGRLD 477
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ + LHA++ T S FL + L+ +Y+ ++ + L P PV+W +++
Sbjct: 35 RGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRP-NPVSWTTLVSG 93
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QN + ++L F M + V P S ++ L R G +H R G D +
Sbjct: 94 LVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQLHCIGTRFGFDTE 153
Query: 141 LYTNNALMNMYAQSQNMD 158
L+ + L +MY++ +D
Sbjct: 154 LFVASNLADMYSKCGLLD 171
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 14 PVSIKTKSQAKQ------LHAQIFKTLEPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK 66
PV++K + ++ +H + K + S + S L+++Y + ++L + D L+
Sbjct: 45 PVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 104
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V W S++ +NG +++ F RM+ S V PD +++ +CT L + R G
Sbjct: 105 KP-DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLG 163
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
VH +IR G DL N+L+N YA+S+
Sbjct: 164 RCVHGFVIRRGFSNDLSLVNSLLNCYAKSR 193
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI L+ + + +H + + N L++ LL Y +++ L +
Sbjct: 146 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 205
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I C QNG E+L F M+ G P+ VL++C D G
Sbjct: 206 -AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 264
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDR------------FQGFGFN 171
H IR G++ ++ + AL++MY + S ++ R GF N
Sbjct: 265 RKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLN 324
Query: 172 GGREASVHEVLDKIPERN 189
G S+ E + E N
Sbjct: 325 GMAHRSIEEFSIMLLENN 342
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++++ ++ E L F M PD+ P LK+C L + +GE +H +
Sbjct: 9 WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVK 68
Query: 134 R-LGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
+ + + DLY ++L+ MY + M + ++D +
Sbjct: 69 KDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 104
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I T NG+ S+ F + ++ + PD + VL SC+ L + H+
Sbjct: 312 VSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHS 371
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ G D + + +L+ +Y++
Sbjct: 372 YVIKYGFDSNPFIGASLVELYSR 394
>gi|297745796|emb|CBI15852.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL--EPNSRFLISRLLFIYNNFNLVHDSLCL 61
+ L++LL++ + + + K +H + K+ + S L + + ++Y + ++ +
Sbjct: 75 AQELVDLLRDSAAKGSIREGKSVHGLLLKSSFGDEESIRLFNHVAYMYAECSCFVEAWRV 134
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + +W +I +NGL ++ F M+ G+ PD V+ +V++SC L
Sbjct: 135 FDGMPHR-NSFSWTVMIAGSKKNGLFLDGFRFFYDMLVDGILPDEFVYSAVIQSCIGLGC 193
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
GE+VH I++ G D+ +L++MYA+ N + +
Sbjct: 194 IELGEAVHGQIVKRGFWDDVIVGTSLLSMYAKLHNSEASV 233
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H QI K + + + LL +Y + S+ + + + V+W ++I +
Sbjct: 197 GEAVHGQIVKRGFWDDVIVGTSLLSMYAKLHNSEASVRVFNAI-AEHNQVSWGAVISGLS 255
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NGL +E+ F+ MI G P+ F SVLK+ + D G VH C++ G++ ++
Sbjct: 256 SNGLYLEAFHQFLAMITQGFTPNMYTFSSVLKAVGKIRDATKGREVHHCVMEYGMESNVV 315
Query: 143 TNNALMNMYAQSQNMD--MHIYDR 164
+L++MY++ ++ ++DR
Sbjct: 316 VGTSLIDMYSKCGHLSDARSVFDR 339
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ Q E+L+ F +M G P+ F SVL +C L +G VH
Sbjct: 450 VSWTTLVSAYVQCYQPSEALSIFSQMREQGFMPNQFTFSSVLVACASLSLLEYGRQVHGL 509
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I + G+D D ++L NMYA+S N+
Sbjct: 510 ICKAGLDDDNCIESSLTNMYAKSGNI 535
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD-- 63
T ++LK I+ ++ +++H + + ++ + + L+ +Y+ + D+ + D
Sbjct: 281 TFSSVLKAVGKIRDATKGREVHHCVMEYGMESNVVVGTSLIDMYSKCGHLSDARSVFDRN 340
Query: 64 --TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
K P W ++I TQ G E+L F+ M + V PD + V + L
Sbjct: 341 FYKSKVNNP---WNAMISSYTQCGYWQEALDLFIEMSLNDVKPDLYTYGGVFSAIAALKW 397
Query: 122 FRFGESVHACIIRLGVDLDLYT-NNALMNMYAQSQNMD--MHIYDRFQ 166
FG VH +++ G + + NNA+++ Y + Q+++ ++DR Q
Sbjct: 398 LYFGRQVHGMVVKSGNGSRVLSLNNAIVDAYFKCQSLEDARKVFDRMQ 445
>gi|302787380|ref|XP_002975460.1| hypothetical protein SELMODRAFT_103099 [Selaginella moellendorffii]
gi|300157034|gb|EFJ23661.1| hypothetical protein SELMODRAFT_103099 [Selaginella moellendorffii]
Length = 456
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S+I C Q G E+L + RM+ V PD F +VL +C L + G++VH C
Sbjct: 205 ISWTSMITACFQQGKDREALHVYHRMLLEAVVPDRLTFATVLNACASLPSLKDGKAVHGC 264
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+ G+ ++L AL++MY +S ++
Sbjct: 265 VRERGLAIELSLGTALVSMYGKSGSL 290
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
K + +++HA + + + LI L +Y N + ++ + + + V+W SII
Sbjct: 370 KRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSK-DTVSWNSII 428
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
N E++ CF M +G+ P S L SC L G+ +H I+ G+D
Sbjct: 429 SGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLD 488
Query: 139 LDLYTNNALMNMYAQSQNMD--------MHIYDRFQGFGFNGGREASVHEVLDKI 185
LD+ +NAL+ +YA++ M+ M YD+ F G S VL I
Sbjct: 489 LDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAI 543
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T IN+L S+ +Q+HA I K + + + LL Y + D + +
Sbjct: 560 TFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRM 619
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I NG+L +++ M+ G D +VL +C + G
Sbjct: 620 SERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERG 679
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VHAC IR ++ ++ +AL++MYA+ +D
Sbjct: 680 MEVHACAIRACLEAEVVVGSALVDMYAKCGKID 712
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T A QLH QI+KT + F + L+ I+ + + L D + V+W ++
Sbjct: 54 TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQK-NLVSWSCLV 112
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLG 136
QNG+ E+ F +I +G+ P+H S L++C L + G +H I +
Sbjct: 113 SGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSP 172
Query: 137 VDLDLYTNNALMNMYAQ 153
D+ +N LM+MY+
Sbjct: 173 YASDMVLSNVLMSMYSH 189
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLL 87
++F +E + LL +Y + + + +LD + PA V+W ++I Q G
Sbjct: 303 RVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAM--PARNEVSWGTLIARHEQKGDT 360
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
E+L + +M+ G P+ + F SVL +C L D R G +HA +++G +L+ +++L
Sbjct: 361 AEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420
Query: 148 MNMYAQSQN--MDMHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
++MY + + +++ G+ +N G+ + +K+P RN
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWN-GKMVEAEGLFNKMPARN 475
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K PA V+W ++I +N ++L F M+ SG P SVL +C L
Sbjct: 470 KMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEM 529
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G VHA I++LG++ +++ AL +MYA+S ++D S V +
Sbjct: 530 GRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLD------------------SSRRVFYQ 571
Query: 185 IPERNGNVELSSGLAGC--NKFEKRVVSAGHD 214
+PE+N N+ ++ + G N F + +S D
Sbjct: 572 MPEKN-NITWTAMVQGLAENGFAEESISLFED 602
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W ++++ +NG ES++ F MI +G+ P+ + F ++L +C+
Sbjct: 578 ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++LK V + + K +H KTL + LL +Y + D+ + + +
Sbjct: 253 VLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEII 312
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W +I Q+ ++ F+RM+ S V P+ VL++C + G
Sbjct: 313 PHD-DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLG 371
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H +I+LG + +L+ NALM++YA+ +NM+
Sbjct: 372 QQIHNLVIKLGYESELFVGNALMDVYAKCRNME 404
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LK V++ +HA K + F+ S L+ Y+ V + C+ D +
Sbjct: 152 VLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGI 211
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ C ++N + ++L F +M +G P+ V SVLK+ L G
Sbjct: 212 -IWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLG 270
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H C ++ D + + AL++MYA+
Sbjct: 271 KGIHGCAVKTLCDTEPHVGGALLDMYAK 298
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K + F+ + L+ +Y + +SL + +L+ A V+W +II
Sbjct: 371 GQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRD-ANEVSWNTIIVGYC 429
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G ++L+ F M + V F SVL++C + +H+ I + + D
Sbjct: 430 QSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTI 489
Query: 143 TNNALMNMYAQ 153
N+L++ YA+
Sbjct: 490 VCNSLIDTYAK 500
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+++ T ++L+ + + Q+H+ I K+ N + + L+ Y + D+L
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC---- 116
+ +++ V+W +II +G ++L F RM S P+ F ++L C
Sbjct: 510 VFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568
Query: 117 ----------TLLVDFRFGESV--HACIIRL 135
++ +D R S+ + CI+RL
Sbjct: 569 LVNQGLSLFNSMTMDHRIKPSMDHYTCIVRL 599
>gi|359485907|ref|XP_003633353.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g14470-like [Vitis vinifera]
Length = 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG+ E+L F+ M +G+ D V SVL +CT L + G+ +H
Sbjct: 78 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACTHLSIVKIGKMIHGL 137
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+IR+G++ + NAL++MY+ S
Sbjct: 138 VIRMGIESYVNLQNALIHMYSGS 160
>gi|242090301|ref|XP_002440983.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
gi|241946268|gb|EES19413.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
Length = 454
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SI+ CC QNG +E++ F M G+ P+ P VL + + G S H+
Sbjct: 259 VSWTSIVACCVQNGKDLEAVELFREMQAQGIEPNSVTIPCVLPAFANVAALTHGRSAHSF 318
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+R G D+Y ++AL++MYA+ GR + D +P RN
Sbjct: 319 ALRKGFLHDVYVSSALVDMYAKC------------------GRVKDARTIFDAMPSRN 358
>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
Length = 869
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP----VAWKS 76
++ HA K L+ + RF + LL +Y LV D+ L ++ T P V W +
Sbjct: 182 GREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNT 241
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ Q+G E++ M+ GV PD F S L +C+ L G +HA +++
Sbjct: 242 MVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK-- 299
Query: 137 VDLDLYTN----NALMNMYAQSQNMDM--HIYDRFQG 167
D DL N +AL++MYA + + + ++D G
Sbjct: 300 -DSDLAANSFVASALVDMYASHERVGVARRVFDMVPG 335
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 21 SQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSI 77
S +++HA + K L NS F+ S L+ +Y + V + + D + + W ++
Sbjct: 288 SLGREMHAYVLKDSDLAANS-FVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAM 346
Query: 78 IRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+ Q G+ E+L F RM +GV P VL +C F E+VH +++ G
Sbjct: 347 VCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG 406
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+ + + NALM++YA+ +M+
Sbjct: 407 MADNPFVQNALMDLYARLGDME 428
Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T+ +L +T + + +H + K ++ F+ + L+ +Y + + +
Sbjct: 375 SETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIF 434
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG------------------VYP 104
++ P V+W ++I C G + ++ M G V P
Sbjct: 435 AAIE-PRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVP 493
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
++ ++L C +L G+ +H +R +D D+ +AL++MYA+
Sbjct: 494 NNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKC---------- 543
Query: 165 FQGFGFNGGREASVHEVLDKIPERN 189
G A V D++P+RN
Sbjct: 544 --------GCLALSRAVFDRLPKRN 560
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T +L + ++ + +A+++HA I + + ++ L + L+ +Y V ++ + D
Sbjct: 146 TYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFD 205
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+K V+W S+I NG E+L + +M G+ PD F S L +CT LVD
Sbjct: 206 GIKNR-DAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD-- 262
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+++HA I+ ++ D + +AL+NMYA+
Sbjct: 263 -GKAIHARIVSSNMESD-FVGSALINMYAR 290
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL+ + + ++ K +H + +T ++FL + L+ +Y N +H + +
Sbjct: 47 ELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASI 106
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+ ++ +NGL +L + RM G PD + VL SC+ + R +
Sbjct: 107 KAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREI 166
Query: 129 HACIIRLG--VDLDLYTNNALMNMYAQ 153
HA II + +L NAL+NMY +
Sbjct: 167 HASIIEAPQIIRDNLSLQNALVNMYGK 193
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L S+ + K +H+++F+ S + + LL +Y + + + + +
Sbjct: 346 TYVTALGACASLGALKEGKAIHSRVFEC-GFQSLVVHTALLTMYAKCGELDAARAVFNRV 404
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I Q G E+L + +M+ G P+ F +VL +C+ D G
Sbjct: 405 RQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAG 464
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H + + ++ NAL+ MYA+ ++++
Sbjct: 465 MKIHGHVENSELASNVAVQNALVTMYAKCGSLEL 498
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q+GL E+L + M GV PD S L +C + + G +H+
Sbjct: 512 VSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSR 571
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
+++ L AL+NMY + ++
Sbjct: 572 VLKNQSFRSSLMVQTALVNMYGRCGRLE 599
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K +HA+I + S F+ S L+ +Y V + + ++ V W S++
Sbjct: 263 GKAIHARIVSS-NMESDFVGSALINMYARCGDVSSARQAFEKIQNK-HVVCWTSLMTAYV 320
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q E+L + RM GV+ D + + L +C L + G+++H+ + G L
Sbjct: 321 QTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ-SLV 379
Query: 143 TNNALMNMYAQSQNMD 158
+ AL+ MYA+ +D
Sbjct: 380 VHTALLTMYAKCGELD 395
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 1/151 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L++ V + +QLHA++ + L +RL+ +Y + LV + L D +
Sbjct: 68 TILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQ 127
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGES 127
W +IR ++G ++ + M+ G + PD+ +P VLK+C L+D G
Sbjct: 128 GNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGRE 187
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH ++R D++ L++MYA+ +D
Sbjct: 188 VHDRVMRTSWAADVFVCAGLIDMYAKCGCVD 218
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ +++H ++ +T F+ + L+ +Y V ++ + D+ T
Sbjct: 172 VLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDS-TTVR 230
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W S+I C QNG E+L M G+ P S + + G +H
Sbjct: 231 DAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELH 290
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQS 154
R G +L++MYA+S
Sbjct: 291 GYGWRRGFGSQDKLKTSLLDMYAKS 315
>gi|225441828|ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 662
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLIS-RLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+K+ + + +H +I K + L+S LL +Y + + D+ + D + + ++W
Sbjct: 207 LKSLQEGRYVH-EIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAVFDRMPSK-DVISWT 264
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
I R +NG E L F +M GV PD S+L +C + G+ +HA ++R
Sbjct: 265 EIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPACGRGAAHKQGKEIHAYLLRN 324
Query: 136 GVDLDLYTNNALMNMYAQS 154
G+DL++ NA+++MY +S
Sbjct: 325 GIDLNVTVQNAVLDMYVKS 343
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+F L H L D + + AW ++I+ NG ++ + +M+ GV PD + P
Sbjct: 42 DFGLTHQ---LFDEIPV-SNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIP 97
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+L + F FG+ VH ++LG+ + Y +AL+ MY +
Sbjct: 98 RILTAARHTSSFSFGKQVHGHALKLGLSSESYVISALLEMYGR 140
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S KQ+H K + ++IS LL +Y + ++ L+ V+W I R
Sbjct: 110 SFGKQVHGHALKLGLSSESYVISALLEMYGRLDGA-NAAKLVFCKSARRNSVSWTLISRL 168
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ F +M+ S D + + +C +L + G VH + G++ D
Sbjct: 169 YIMEDKPGLAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYVHEIAKKCGLEAD 228
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGG 173
+ +N+L+ MY ++ ++DR F+G+ NGG
Sbjct: 229 VLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGG 275
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++ + L+NLL+ ++ + +Q HAQIF + F+ ++L+ Y + S
Sbjct: 24 LSPFQNLLNLLELSITNNCLTLTQQCHAQIFSMDFSQNPFIATKLISAYAICGVPTASKL 83
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ ++L+ + P+ W S+I +N ES + F +M GV PD ++ K C +
Sbjct: 84 VFNSLEVKSVPL-WNSLISGYVKNQENTESFSLFCQMCSFGVLPDDYTLATLSKVCGEIG 142
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
G+ +H +++G LD N+LM+MY + G + +
Sbjct: 143 HLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKC------------------GEFSEALK 184
Query: 181 VLDKIPERN 189
+ D++PER+
Sbjct: 185 LFDEMPERS 193
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L S L+ +Y+ N V + L D +K V W ++I QNG L E+LT F M
Sbjct: 275 LGSCLIDMYSRINRVEKCMQLFDQMKRRNVYV-WTAMINGYVQNGALEEALTLFHEMQAK 333
Query: 101 -GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNM 157
GV P+ SVL C+ L G+ +H IR ++ D +NAL++MY++ S N
Sbjct: 334 DGVEPNRVTLVSVLPICSSLAGLPGGKQIHGYAIRKRLNFDASLSNALIDMYSKCGSLNY 393
Query: 158 DMHIYDR-------------FQGFGFNGGREASV 178
++D G+G +G E +V
Sbjct: 394 ARRVFDNGTFRRDAISWSSIISGYGLHGKGEEAV 427
>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic-like [Glycine max]
Length = 903
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+T + +H+ I K + +L + LL +Y V + L D + V+W ++
Sbjct: 30 QTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPH-RDVVSWTTL 88
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ T+N E+L F M+GSG P+ S L+SC+ L +F FG +HA +++LG+
Sbjct: 89 LSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGL 148
Query: 138 DLDLYTNNALMNMYAQ 153
+L+ L+++Y +
Sbjct: 149 ELNHVLGTTLVDLYTK 164
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 6 TLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T + LL P + K K LH+Q+ + L + ++ +Y + D++ + +
Sbjct: 220 TFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKV--S 277
Query: 65 LKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+TP V W SII QN + E++ V M SG+ P++ + S+L + + ++
Sbjct: 278 QQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLE 337
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
GE H+ +I +G++ D+Y NAL++MY + + + F+G
Sbjct: 338 LGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIAL 384
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + L++ ++ ++HA + K + L + L+ +Y + + LL +
Sbjct: 119 TLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFV 178
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL-VDFRF 124
K V+W ++I + E+L +V+MI +G+YP+ F +L + L + +
Sbjct: 179 KD-GDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGY 237
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H+ +I GV+++L A++ MYA+ + M+
Sbjct: 238 GKVLHSQLITFGVEMNLMLKTAIICMYAKCRRME 271
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL S+ + +Q H+++ ++ + L+ +Y H + +
Sbjct: 322 TYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMY--MKCSHTTTNGVKAF 379
Query: 66 KTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ A P ++W S+I ++G ES+ F M +GV P+ ++L +C+ +
Sbjct: 380 RGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSII 439
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYA 152
+ +H II+ VD+D+ NAL++ YA
Sbjct: 440 QTKKLHGYIIKTQVDIDMAVGNALVDAYA 468
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L + + + KQLH FK+ + + L+ Y+ + D+ + +
Sbjct: 525 SLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDI 584
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
P V+W +I NGL+ ++L+ F M +GV PD F S++ +C+
Sbjct: 585 TEP-DRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACS 635
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V + K A L +F +E S F + +++ Y+ +++L + T V+W
Sbjct: 184 VDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVF-TRMPERDHVSW 242
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I +Q G + L+ FV M G P+ + SVL +C + D ++G +HA I+R
Sbjct: 243 NTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILR 302
Query: 135 LGVDLDLYTNNALMNMYAQ 153
+ LD + + L++MYA+
Sbjct: 303 MEHSLDAFLGSGLIDMYAK 321
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 36/165 (21%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-------------------- 62
A++LHAQ+ + S FL++ LL +Y+N +V D+ +
Sbjct: 23 ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82
Query: 63 -------DTLKTPAP-----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+ L P V+W ++I QNGL S+ F+ M+ + N P
Sbjct: 83 SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142
Query: 111 ----SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
+K+C L RF +HA +I+L + N+L++MY
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMY 187
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S++ Q+G E + +V M V PD F + +++C L + G V +
Sbjct: 473 ITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSH 532
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G+ D+ N+++ MY++
Sbjct: 533 VTKFGLSSDVSVANSIVTMYSR 554
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 16/198 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L SI LHA+I + FL S L+ +Y + + + ++L
Sbjct: 276 TYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSL 335
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I Q GL ++L F +M + V D ++L C+ G
Sbjct: 336 G-EQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAATG 394
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQ------GFGFN 171
E +H I+ G+D + NA++ MYA+ + + M + D F N
Sbjct: 395 ELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQN 454
Query: 172 GGREASVHEVLDKIPERN 189
G + + + D +PERN
Sbjct: 455 GDIDRA-RQCFDMMPERN 471
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T + LK + +++H Q K F+ + L +YN + L L +
Sbjct: 169 TYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFE 228
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++ T V+W +II Q G ++ F RM + V P+ F +V+ C L
Sbjct: 229 SM-TQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIE 287
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+GE +HA +IR G+ L N++M MY++ +D+
Sbjct: 288 WGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDL 323
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S + LH KT NS F+ S L+ +Y V D C++ V+W +II
Sbjct: 85 SFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKV-DEGCIVFKEMPLRNVVSWTAIIAG 143
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G E+L F M V D F S LK+C +G +H ++ G
Sbjct: 144 LVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAV 203
Query: 141 LYTNNALMNMYAQSQNMD 158
+ N L MY + +D
Sbjct: 204 SFVANTLATMYNKCGKLD 221
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLHA + + +S + + ++ +Y+ + + + L + ++W ++I
Sbjct: 289 GEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGL-SRRDIISWSTMISGYA 347
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E+ M G P+ F SVL C + G+ +HA ++ +G++ +
Sbjct: 348 QGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTM 407
Query: 143 TNNALMNMYAQ 153
+AL+NMY++
Sbjct: 408 VQSALINMYSK 418
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W +II E+L+ F +M + G++ D + LK+C L + FGES+H
Sbjct: 33 ISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHG 92
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ ++ +AL++MY + +D
Sbjct: 93 YSVKTDFVNSVFVGSALVDMYMKIGKVD 120
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQLHA + + + S L+ +Y+ + ++ + D + V+W ++I
Sbjct: 389 QGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYN-NIVSWTAMINGY 447
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVDFRF 124
++G E++ F ++ G+ PD F +VL +C+ LVD F
Sbjct: 448 AEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGF 492
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
++R L + + L+ D+L L D + A W +I+ T GL +E++ + RM+ +G
Sbjct: 67 LTRALRGFADSRLMEDALQLFDEM-NKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG 125
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V D +P V+KS + G+ +HA +I+LG D+Y N+L+++Y +
Sbjct: 126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMK 177
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
++K+ I + + K++HA + K + ++ + L+ +Y D+ + + +
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP-ER 194
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I G SL F M+ G PD S L +C+ + + G+ +H
Sbjct: 195 DIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH 254
Query: 130 ACIIRLGVDL-DLYTNNALMNMYAQ 153
+R ++ D+ ++++MY++
Sbjct: 255 CHAVRSRIETGDVMVMTSILDMYSK 279
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W SII QNG +L F + S + PD S+L + + G +HA
Sbjct: 397 ISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAY 456
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I++ + N+L++MYA +++
Sbjct: 457 IVKSRYWSNTIILNSLVHMYAMCGDLE 483
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 17 IKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+ + K++H ++ +E +++ +L +Y+ + V + + + + VAW
Sbjct: 244 VYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAWN 302
Query: 76 SIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I C +NG + ++ CF +M +G+ PD ++L + +L G ++H +R
Sbjct: 303 VMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMR 358
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
G + AL++MY + + I+DR
Sbjct: 359 RGFLPHMVLETALIDMYGECGQLKSAEVIFDR 390
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLL 62
+ T+ ++L + S+ +++HA I K+ ++ +++ L+ +Y + D+ C
Sbjct: 431 STTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFN 490
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LV 120
L V+W SII +G S+ F MI S V P+ + F S+L +C++ +V
Sbjct: 491 HILLKDV--VSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMV 548
Query: 121 D--FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
D + + ES+ G+D + ++++ ++ N
Sbjct: 549 DEGWEYFESMKR---EYGIDPGIEHYGCMLDLIGRTGN 583
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I K+ ++ S L+ +Y+ +V + D + V+W S+I C QN
Sbjct: 172 QIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVR-NIVSWNSLITCYEQN 230
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYT 143
G ++L FVRM+ G+ PD SV +C L R G +HA +++ DL
Sbjct: 231 GPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVL 290
Query: 144 NNALMNMYAQSQNMDMH--IYDRF 165
NAL++MYA+ + ++ ++DR
Sbjct: 291 GNALVDMYAKCRRVNEARLVFDRM 314
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E++ F+ + ++P H F ++L +C L D + G H
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTH 410
Query: 132 IIRLGV------DLDLYTNNALMNMYAQ 153
I++ G D D++ N+L++MY +
Sbjct: 411 ILKHGFWFKSGEDSDIFVGNSLIDMYMK 438
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 32/176 (18%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
LL V K+ +A+ +HA+I KT + F+ +RL+ +Y + D+ + D ++
Sbjct: 24 KLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQR 83
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCF-------------------------------VRM 97
+W +++ T+ G L E+L F V M
Sbjct: 84 -NTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDM 142
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ F S L +C L+D G +H I + LD+Y +AL++MY++
Sbjct: 143 HSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSK 198
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQ---LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
L+N N +K QA H FK+ E + F+ + L+ +Y LV D + +
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I QNG E+L F M+ SG PDH VL +C+
Sbjct: 451 RM-LERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACS 503
>gi|2911086|emb|CAA17548.1| putative protein [Arabidopsis thaliana]
Length = 434
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + A V W +I Q+GL+ ESLT F MI SGV PD F S+L S + + +
Sbjct: 299 MMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEY 358
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H I+R + LD++ +AL++ Y + + + M
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM 393
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
Q KQ+HA + + R+L +Y +F+ LD ++ P W SII
Sbjct: 53 QGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRP--WNSII 110
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+NGLL ++L + +M+ GV PD + FP ++K+C L +F+ + + + LG+D
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170
Query: 139 LDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ + ++L+ Y + +D+ ++DR
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFDR 198
>gi|297745358|emb|CBI40438.3| unnamed protein product [Vitis vinifera]
Length = 1079
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LL+ + + +QLH I K+ ++ F+ S L+ Y F LV ++ D +
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W ++ C NG+ ++ F M GV D+ F S++ SC +L G
Sbjct: 240 SS-RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLG 298
Query: 126 ESVHACIIRLGVDLDLYTNNAL 147
+ VH IIRL DLD+ +AL
Sbjct: 299 KQVHGLIIRLSFDLDVLVASAL 320
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRC 80
+ + LHA + + ++L+ Y + ++ L D K P + W +
Sbjct: 45 RGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFD--KIPNTNIRRWIVLTGA 102
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C + G E+L+ F M G+ P+ V PS+LK+C L D R GE++H I++ + D
Sbjct: 103 CARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESD 162
Query: 141 LYTNNALMNMYAQSQNMD 158
Y +AL+ MY++ +++
Sbjct: 163 AYIISALIYMYSKCGHVE 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QN E F M+ G P S+L +CT + + R G+ +H
Sbjct: 265 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 324
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ +GV+ D+Y +AL++MYA+
Sbjct: 325 AMVIGVEKDVYVRSALVDMYAK 346
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ + K++H I ++ ++++ L+ +Y + ++ L L
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ Q G E++ F RM G+ PD F S L SC+ + G
Sbjct: 360 PH-RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG 418
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+S+H ++ G LD+Y +AL++MYA+ +MD
Sbjct: 419 KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMD 451
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 21/182 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
LL+ +++ Q +++HA I K+ ++PN R+L + LL +Y + D+ + D ++
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGIQPN-RYLENTLLSMYAKCGSLTDARRVFDGIRD 159
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V+W ++I +E+ C+ M +G PD F S+L + T + G+
Sbjct: 160 -RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH I + G++L+ +L+ MYA+ ++ + + DK+PE
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDI------------------SKAQVIFDKLPE 260
Query: 188 RN 189
+N
Sbjct: 261 KN 262
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+L+N NP ++ +++H +I K LEP + + L+ +Y + + +
Sbjct: 202 SLLNAFTNPELLQV---GQKVHMEIAKAGLELEPR---VGTSLVGMYAKCGDISKAQVIF 255
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L V W +I Q G + +L +M + V P+ + S+L+ CT +
Sbjct: 256 DKLPEKNV-VTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLAL 314
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH II+ G +++ NAL+ MY +
Sbjct: 315 EHGKKVHRYIIQSGYGREIWVVNALITMYCK 345
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ K +H Q+ +L S L+ +Y + D+ + + + + VAW ++I
Sbjct: 416 QEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM-SERNVVAWTAMITG 474
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
C Q+G E+L F +M G+ PD F SVL +CT
Sbjct: 475 CAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACT 511
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 81 CTQNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
C Q G L E+L MI G+ VY D VF +L+ C L G VHA I++ G+
Sbjct: 72 CKQ-GRLKEALGILNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQ 128
Query: 139 LDLYTNNALMNMYAQ 153
+ Y N L++MYA+
Sbjct: 129 PNRYLENTLLSMYAK 143
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ + G L E+L + RM+ +G+ PD FP VL++C + D+R G VHA +
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
+R G ++ NAL+ MYA+ ++
Sbjct: 224 LRFGFGDEVDVLNALVTMYAKCGDI 248
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N E+L F M+G V P+ F + L +C R G+ +HA
Sbjct: 466 VSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAY 524
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ + Y NAL+++Y +
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVK 546
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
K +HA + + +L++++L NF + S +LD K P + + ++IR
Sbjct: 27 KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL-FNTMIRGLVL 85
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N ES+ + M G+ PD FP VLK+C ++D G +H+ +++ G + D +
Sbjct: 86 NDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFV 145
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+L+N+Y + +D + +V D IP++N
Sbjct: 146 KISLINLYTKCGFID------------------NAFKVFDDIPDKN 173
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I+ NGL E+L F +M+ G+ PD VL SC L G+
Sbjct: 276 VSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNL 335
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
I + AL++MYA+ MD ++ F+G
Sbjct: 336 INGNEFLDNSVLGTALIDMYAKCGRMD-RAWEVFRG 370
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK + ++H+ + K F+ L+ +Y + ++ + D + P
Sbjct: 114 VLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDI--PD 171
Query: 70 PPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
A W + I G E++ F R++ G+ PD VL +C D R GE +
Sbjct: 172 KNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWI 231
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G+ +++ AL++ Y + NM+
Sbjct: 232 DEYITENGMVRNVFVATALVDFYGKCGNME 261
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIR 79
S +Q+HAQ+ ++ L + L+ Y ++ L D +P+PP+ W +IR
Sbjct: 88 SPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIR 147
Query: 80 CCTQNGLLVESLTCFVRMIG----SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++ E + F+RM+ V PD F V+ SC+ + +GE VH +++
Sbjct: 148 TYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKS 207
Query: 136 GVDLDLYTNNALMNM-------------YAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G + +LY N+++NM + Q D+ + G G E+
Sbjct: 208 GFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELF 267
Query: 183 DKIPERN--GNVELSSGLAGCNKFEK 206
+ +P RN + SG GC ++ +
Sbjct: 268 NMMPVRNDVSWAVMISGFLGCGRYPE 293
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F + F + LL Y + D C L + V+W +I G
Sbjct: 234 KVFNQMSERDVFSWTSLLGGYAKHGEM-DRACELFNMMPVRNDVSWAVMISGFLGCGRYP 292
Query: 89 ESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
E+LT F M+ V P+ V VL +C L G +H I ++G+ + AL
Sbjct: 293 EALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTAL 352
Query: 148 MNMYAQSQNMD 158
++MYA+ +D
Sbjct: 353 IDMYAKCGRID 363
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
ST T +++K + +H+ +F + + F+ + L+ Y + +
Sbjct: 107 STYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVF 166
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + + VAW S+I QNGL E++ F +M S V PD F SVL +C+ L
Sbjct: 167 DEMPQRSI-VAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSL 225
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FG +H CI+ G+ +++ +L+NM+++
Sbjct: 226 DFGCWLHDCIVGSGITMNVVLATSLVNMFSR 256
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q HA + T SR L+++LL + + + L ++ P + S+I+ ++
Sbjct: 27 QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDP-DSFLFNSLIKASSK 85
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ++++ + RM+ S + P F SV+K+C L G VH+ + G D +
Sbjct: 86 FGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFV 145
Query: 144 NNALMNMYAQS 154
AL+ YA+S
Sbjct: 146 QAALIAFYAKS 156
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
T+ +LL S+ + KQLH+ + K LL +Y + HD L
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D V W ++ Q L +S F +M +G++P+ +P +L++CT
Sbjct: 307 DRTNV----VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
GE +H+ I+ G + D+Y + L++MY++ +D
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ K + ++ L+ +Y+ + + + +L+ L+ V+W S+I
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAGYV 423
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+ E+L F M GV+PD+ S +C + R G +HA + G D+
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS 483
Query: 143 TNNALMNMYAQ 153
N L+N+YA+
Sbjct: 484 IWNTLVNLYAR 494
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAW 74
K +Q + +HAQ++K + F+ + L+ +Y +F L C D L V +
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC--DML--FCDRVTF 213
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I Q G +L F M SG+ PD S+L +C + D + G+ +H+ +++
Sbjct: 214 NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK 273
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G+ D T +L+++Y + +++
Sbjct: 274 AGMSFDYITEGSLLDLYVKCGDIE 297
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ I+ L N IK Q KQ+H + KT + + + L+ +Y + D+ + +
Sbjct: 553 SAISALANLADIK---QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEM 609
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +II C+Q+G +E+L F +M G+ P+ F VL +C+
Sbjct: 610 -SLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
IK Q Q+HA+++ + + + L+ +Y ++ L ++ + W
Sbjct: 458 AGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-DEITW 516
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I Q+ L ++L F++M +G + F S + + L D + G+ VH ++
Sbjct: 517 NGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G + NAL+++Y + +++
Sbjct: 577 TGHTSETEVANALISLYGKCGSIE 600
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ Q+GL E+ + +M + V P V SVL +CT F G +HA
Sbjct: 110 VSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQ 169
Query: 132 IIRLGVDLDLYTNNALMNMY 151
+ + + + NAL+ +Y
Sbjct: 170 VYKQAFCSETFVGNALIALY 189
>gi|302755706|ref|XP_002961277.1| hypothetical protein SELMODRAFT_74388 [Selaginella moellendorffii]
gi|300172216|gb|EFJ38816.1| hypothetical protein SELMODRAFT_74388 [Selaginella moellendorffii]
Length = 485
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+ + ++LHAQ+ T FL + L+ +Y + D + T PV+W ++
Sbjct: 25 RALEEGRRLHAQLIDTGLDTGTFLGNLLVQMYGKCGSI-DRAREVFTAMPDRSPVSWTTM 83
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I NGL S+ F M G PD F + L SC+ R G +HA + G+
Sbjct: 84 INALAHNGLWKRSIALFAEMDLDGARPDRLCFSAALDSCSSGAALREGRLLHAEAVAAGL 143
Query: 138 DLDLYTNNALMNMYAQ 153
+ +L AL+NMY +
Sbjct: 144 EDELLVATALINMYGK 159
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 39/188 (20%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFK---TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
NLL + K + K++HA++ K + +P R L L+ +Y+ + ++D
Sbjct: 111 NLLFQCTASKASTPGKEIHARVIKLGLSQDPKIRNL---LINLYSKCQFFKYARKMVDES 167
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V+W ++I +QNG E+++ F M GV + FPS+LK+CT D G
Sbjct: 168 TEP-DLVSWSALISGYSQNGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTTDMWLG 226
Query: 126 ES--------------------------------VHACIIRLGVDLDLYTNNALMNMYAQ 153
+H +I+L DLDL++ NAL++MYA+
Sbjct: 227 RQDMILSGIRPNEFSLSCMINACTGLEDSSQGRKIHGYLIKLAYDLDLFSANALVDMYAK 286
Query: 154 SQNMDMHI 161
++ I
Sbjct: 287 VGTLEEAI 294
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LK+ S++ Q+HA K+ ++ + L+ Y + D+ +
Sbjct: 443 TLSTVLKSVASLQVDHICSQIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQ-- 500
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++P VA+ S+I +Q+G E+L ++ M + PD V S+L +C L +
Sbjct: 501 ESPFVDLVAFTSMITAYSQDGQGEEALKLYLEMQDRKIRPDSFVCSSLLNACANLSAYEQ 560
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH +++ G D++ N+L+NMYA+ ++D
Sbjct: 561 GKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSID 594
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ + LK + K +QLH+ + K + FL L+ +Y+ +L+ D+ L + L
Sbjct: 342 TISSALKACAGMGLKELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFN-L 400
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W + I +QNG +E+++ F M GV + +VLKS L
Sbjct: 401 MPERDLIVWNAAITGHSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHIC 460
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA ++ G D Y N+L++ Y +
Sbjct: 461 SQIHALSLKSGFQFDNYVANSLIDTYGK 488
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
++ SQ +++H + K F + L+ +Y + +++ + + + P V+W +
Sbjct: 252 LEDSSQGRKIHGYLIKLAYDLDLFSANALVDMYAKVGTLEEAIRVFEEIAKP-DIVSWNA 310
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
II C +L F +M SG+ P+ S LK+C + G +H+ ++++
Sbjct: 311 IIAGCALREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGLKELGRQLHSSLLKMD 370
Query: 137 VDLDLYTNNALMNMYAQ 153
+ D + L++MY++
Sbjct: 371 IRSDSFLAVGLIDMYSK 387
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++ L+ S K Q K +H +IF ++ L L+ Y + + + + T
Sbjct: 5 TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P W +++ T N VE+L F ++ S V PD +P VLK+C L +
Sbjct: 65 DCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIY 124
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ-SQNMD-MHIYDRF 165
G +H +++ G+ D++ ++LMNMYA+ Q +D + ++D F
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEF 167
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCC 81
+++H + KT F+ S L+ +Y + D++ L D P V W ++I C
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEF--PQRDVGCWNAVISCY 182
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++G +L F +M G P+ F V+ SCT L++ G+ VH +I + LD
Sbjct: 183 FKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDA 242
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+ +AL++MY + ++M EV +KIP +N
Sbjct: 243 FVLSALVDMYGKCGCLEM------------------AKEVFEKIPRKNA 273
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I G +++L + M V PD F S L +C+ L G +H C
Sbjct: 375 VSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYC 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II ++ + AL++MYA+ ++D
Sbjct: 435 IINHKLEANEIVMGALLDMYAKCGDVD 461
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIR 79
+ K++H ++ + F++S L+ +Y + + + + K P + W ++I
Sbjct: 224 ERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFE--KIPRKNAITWNAMIT 281
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ G + +RM G P S++ + + V R G+ +H I+R +D+
Sbjct: 282 GYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV 341
Query: 140 DLYTNNALMNMY 151
D++ + +L++ Y
Sbjct: 342 DIFIDVSLIDFY 353
>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 28/221 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++++ VS K + +H K +++ L+ +Y F V + L +
Sbjct: 149 TFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEM 208
Query: 66 -KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V+W SI+ C QNG+ E+ CF M +G +PD S+L++C R
Sbjct: 209 PESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRM 268
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
E +H I G+D +L L+N+Y++ GR + +V ++
Sbjct: 269 VEVLHGVIFTCGLDENLTIVTTLLNLYSKL------------------GRLNNSRKVFEE 310
Query: 185 I--PERNGNVELSSGLA--GCNK-----FEKRVVSAGHDAD 216
I P++ + +G A GC K FE+ V G + D
Sbjct: 311 ISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPD 351
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++LL+ + + LH IF + +++ LL +Y+ +++S + + +
Sbjct: 252 TMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEI 311
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCT 117
P VAW +++ +G E++ F R++ G+ PDH F +L +C+
Sbjct: 312 SKP-DKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACS 363
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ NLL+ +S K +H QI + + FL + L+ + + + V ++ + D
Sbjct: 28 REFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFD- 86
Query: 65 LKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDF 122
K P + W S++ +Q G E+L FV + SG +P+ V SV+++CT L
Sbjct: 87 -KMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVV 145
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H ++R G D D+Y +L++ Y+++ N++
Sbjct: 146 EKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIE 181
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++++ + + QLH + ++ ++ + L+ Y+ + ++ + D L
Sbjct: 131 VLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 190
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +II T+ G SL F +M + V PD V SVL +C++L G
Sbjct: 191 -SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 249
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA ++R G ++D+ N L++ Y +
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTK 277
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + + +++ L+ Y N V L D + ++W ++I
Sbjct: 249 GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQM-VVKNIISWTTMISGYM 307
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++ F M G PD SVL SC G VHA I+ ++ D +
Sbjct: 308 QNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEF 367
Query: 143 TNNALMNMYAQS 154
N L++MYA+S
Sbjct: 368 VKNGLIDMYAKS 379
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL S+ +KQ+H I K F S L+ +Y+ + V D+ + + +
Sbjct: 434 TFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 493
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ TQ+ E+L + + S P+ F +++ + + L R G
Sbjct: 494 -NEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHG 552
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ H ++++G+D + NAL++MYA+
Sbjct: 553 QQFHNQLVKMGLDFCPFVTNALVDMYAK 580
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+HA K + F+ + L+ +Y NL+ D+ + D + +++ ++I
Sbjct: 349 QGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM-AEQNVISYNAMIEGY 407
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ L E+L F M P F S+L L + +H II+ GV LDL
Sbjct: 408 SSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDL 467
Query: 142 YTNNALMNMYAQ 153
+ +AL+++Y++
Sbjct: 468 FAGSALIDVYSK 479
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+ ++ + +Q H Q+ K F+ + L+ +Y + ++ + ++
Sbjct: 535 TFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS- 593
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W S+I Q+G E+L F M+ G+ P++ F +VL +C+
Sbjct: 594 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 645
>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
Length = 732
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 17 IKTKSQ--AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
+T++Q +Q+H I K+ + ++ S LL Y F L+ DS + ++ V+W
Sbjct: 396 FRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVER-LDLVSW 454
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I G E++ R+ +G PD +F S+ C + +R +SVH+ +++
Sbjct: 455 GAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVK 514
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
+G + ++ +A+++ YA+ +++
Sbjct: 515 MGYEAHVFVASAVIDAYAKCGDIE 538
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
Q+HAQI K N F + L+ +Y + L + + V+W ++
Sbjct: 95 GSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMK-NLVSWTLVVSGAV 153
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL------VDFRFGESVHACIIRLG 136
QNG L ++ MI +G+ P+ V K+C L + FG +H II+
Sbjct: 154 QNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQSE 213
Query: 137 VDLDLYTNNALMNMYAQSQN--MDMHIYDRFQ 166
V N+LM+MY ++ + ++DR Q
Sbjct: 214 VGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQ 245
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ NLL+ +S K +H QI + + FL + L+ + + + V ++ + D
Sbjct: 50 REFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFD- 108
Query: 65 LKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDF 122
K P + W S++ +Q G E+L FV + SG +P+ V SV+++CT L
Sbjct: 109 -KMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVV 167
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H ++R G D D+Y +L++ Y+++ N++
Sbjct: 168 EKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIE 203
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++++ + + QLH + ++ ++ + L+ Y+ + ++ + D L
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL- 212
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ V W +II T+ G SL F +M + V PD V SVL +C++L G+
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA ++R G ++D+ N L++ Y +
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTK 299
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + + +++ L+ Y N V L D + ++W ++I
Sbjct: 271 GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQM-VVKNIISWTTMISGYM 329
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++ F M G PD SVL SC G VHA I+ ++ D +
Sbjct: 330 QNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEF 389
Query: 143 TNNALMNMYAQS 154
N L++MYA+S
Sbjct: 390 VKNGLIDMYAKS 401
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+HA K + F+ + L+ +Y NL+ D+ + D + +++ ++I
Sbjct: 371 QGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM-AEQNVISYNAMIEGY 429
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ L E+L F M P+ F +++ + + L R G+ H ++++G+D
Sbjct: 430 SSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 489
Query: 142 YTNNALMNMYAQ 153
+ NAL++MYA+
Sbjct: 490 FVTNALVDMYAK 501
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+ ++ + +Q H Q+ K F+ + L+ +Y + ++ + ++
Sbjct: 456 TFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS- 514
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W S+I Q+G E+L F M+ G+ P++ F +VL +C+
Sbjct: 515 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK ++ T + KQ HA K ++ + L++ Y + + + + D + T
Sbjct: 137 LLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEM-TER 195
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I C +N E++ F++M G PD +L +C L + G VH
Sbjct: 196 TLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVH 255
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ ++ G+ L++ A ++MYA+S ++
Sbjct: 256 SQVVGRGMVLNVQLGTAFVDMYAKSGDV 283
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYN---NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
++HAQI + N F + LL + + NL + LL + + W IIR
Sbjct: 48 EIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSY-GCSLLFHCHFHSATMPWNFIIRGY 106
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ + E+++ F M GV P++ FP +LK+C L + G+ HA I+ G+DLD+
Sbjct: 107 SSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDV 166
Query: 142 YTNNALMNMYAQSQNMD 158
Y N L+ Y + M
Sbjct: 167 YVRNTLIYFYGSCKRMS 183
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++LK V + + K +H KTL + LL +Y + D+ + +
Sbjct: 265 ALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 66 KTPAPPVAWKS-IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V S +I Q+ ++ F+R++ S V P+ SVL++CT +V F
Sbjct: 325 --PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDF 382
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H I++G + DL+ NALM+ YA+ +MD
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LK +++ A +H+ +K ++ F+ S L+ Y+ +LV D+ + + +
Sbjct: 164 VLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI 223
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ C ++N + F +M SG P+ SVLK+ L G
Sbjct: 224 -VRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLG 282
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H C I+ D + + AL++MYA+
Sbjct: 283 KGIHGCAIKTLNDTEPHVGGALLDMYAK 310
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H K + F+ + L+ Y N + SL + +L+ A V+W +I+ +
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD-ANEVSWNTIVVGFS 441
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+GL E+L+ F M + + + SVL++C R +H I + + D
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTV 501
Query: 143 TNNALMNMYAQ------SQNMDMHIYDR--------FQGFGFNGGREASVHEVLDKIPER 188
N+L++ YA+ + + H+ +R G+ + G+ A E+ D++ +
Sbjct: 502 IGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALH-GQAADALELFDRMNKS 560
Query: 189 N 189
N
Sbjct: 561 N 561
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 113 LKSCTLLVDFRFGESVHACIIRLGV--DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
L+ C D R G +VH ++R G LDL+ N L+NMY +
Sbjct: 66 LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKL---------------- 109
Query: 171 NGGREASVHEVLDKIPERN 189
G AS + D++PERN
Sbjct: 110 --GPLASARRLFDRMPERN 126
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + ++ I + KQ+H K + ++ L+ +Y + D+ D L
Sbjct: 317 TFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYL 376
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K P V W S+I QNG +LT + RM + P SVL++C+ L G
Sbjct: 377 KEP-DIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQG 435
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +HA I+ G L++ +AL MYA+ +++
Sbjct: 436 KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLE 468
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
++ ++LL K + K +HAQ+ +T +S +L + L+ +Y + + + ++
Sbjct: 11 RSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFES 70
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVES--LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ T V+W +I +Q G + S + F RM P+ + F V + + +
Sbjct: 71 I-TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPET 129
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G HA I+ D++ ++L+NMY + M +V
Sbjct: 130 FGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCM------------------LDARKVF 171
Query: 183 DKIPERN 189
D IPERN
Sbjct: 172 DTIPERN 178
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 60 CLLDTLKT-----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
CL D LKT + W ++I Q G E+L F M +G P F V+
Sbjct: 264 CLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVIN 323
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
+C+ + G+ +H ++ G + +Y AL++MYA+ ++ D +GF +
Sbjct: 324 ACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSL----VDARKGFDY 375
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
P H F +L CT D + G+++HA ++R G +Y N+L+N+YA+
Sbjct: 8 PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAK 57
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q HA KT F+ S L+ +Y + D+ + DT+ V+W +II
Sbjct: 134 QAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIP-ERNTVSWATIISGYAME 192
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
+ E+ F M D ++ SVL + T+ +G+ +H ++ G+
Sbjct: 193 RMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVG 252
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGRE 175
NAL+ MY + +D D + F +G ++
Sbjct: 253 NALVTMYGKCGCLD----DALKTFELSGDKD 279
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ + +H QI + P + ++L+ Y V + + D + + V+W +++
Sbjct: 29 RGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSV-VSWTAMVSGY 87
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++NG E+L F M+ SGV P+ + SV +C R GE VHAC+ + D+
Sbjct: 88 SRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDV 147
Query: 142 YTNNALMNMY 151
+ +ALM+M+
Sbjct: 148 FVQSALMDMH 157
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA + K F+ S L+ ++ V D++ L ++ VAW +++R
Sbjct: 131 GEQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERK-DVVAWNALLRGLV 189
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ++L M+ + PDH F S LK+C + E +H CII+LG +
Sbjct: 190 ERAQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKV 249
Query: 143 TNNALMNMYAQSQNMDMH--IYD 163
++++ YA+ + + IYD
Sbjct: 250 VIGSIIDAYAKCRGLSSARLIYD 272
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
V+W S+I C +NG ++++ F RM+ GV P+ F S+L +C
Sbjct: 382 VSWTSLITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSAC 426
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVHDSL 59
T + LK ++ + + +H I K + +I ++ Y ++ L++DS+
Sbjct: 215 TFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSI 274
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
C D + + A ++ S+ R ++ +++ F ++ G+ D + S+L C +
Sbjct: 275 CEPDLVSSTAL-ISGYSMDRNHSE-----DAMELFCKIHRKGLRIDGVLLSSLLGLCANV 328
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
RFG +HA + + D+ +NA+++MYA++ G A
Sbjct: 329 ASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKA------------------GEFADAR 370
Query: 180 EVLDKIPERNGNVELSSGLAGCNK 203
D++P RN V +S + C K
Sbjct: 371 RAFDEMPYRN-VVSWTSLITACGK 393
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ + G L E+L + RM+ +G+ PD FP VL++C + D+R G VHA +
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
+R G ++ NAL+ MYA+ ++
Sbjct: 224 LRFGFGDEVDVLNALVTMYAKCGDI 248
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N E+L F M+G V P+ F + L +C R G+ +HA
Sbjct: 466 VSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAY 524
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ + Y NAL+++Y +
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVK 546
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++LK V + + K +H KTL + LL +Y + D+ + +
Sbjct: 265 ALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 66 KTPAPPVAWKS-IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V S +I Q+ ++ F+R++ S V P+ SVL++CT +V F
Sbjct: 325 --PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDF 382
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H I++G + DL+ NALM+ YA+ +MD
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LK +++ A +H+ +K ++ F+ S L+ Y+ +LV D+ + + +
Sbjct: 164 VLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI 223
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ C ++N + F +M SG P+ SVLK+ L G
Sbjct: 224 -VRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLG 282
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H C I+ D + + AL++MYA+
Sbjct: 283 KGIHGCAIKTLNDTEPHVGGALLDMYAK 310
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H K + F+ + L+ Y N + SL + +L+ A V+W +I+ +
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD-ANEVSWNTIVVGFS 441
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+GL E+L+ F M + + + SVL++C R +H I + + D
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTV 501
Query: 143 TNNALMNMYAQ------SQNMDMHIYDR--------FQGFGFNGGREASVHEVLDKIPER 188
N+L++ YA+ + + H+ +R G+ + G+ A E+ D++ +
Sbjct: 502 IGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALH-GQAADALELFDRMNKS 560
Query: 189 N 189
N
Sbjct: 561 N 561
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 113 LKSCTLLVDFRFGESVHACIIRLGV--DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
L+ C D R G +VH ++R G LDL+ N L+NMY +
Sbjct: 66 LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKL---------------- 109
Query: 171 NGGREASVHEVLDKIPERN 189
G AS + D++PERN
Sbjct: 110 --GPLASARRLFDRMPERN 126
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F L + + L+ Y V D++ L + + P AW +II CTQNGL V
Sbjct: 388 KLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVP-AWNAIIAGCTQNGLFV 446
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F RM+ G P+ +L +C L + G+ +H R V N L+
Sbjct: 447 EAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLI 506
Query: 149 NMYAQSQNM--DMHIYDRFQGFGF 170
+MY + N+ I+D F G
Sbjct: 507 DMYGKCGNLMEAKWIFDAFSDRGL 530
>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
Length = 1068
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ + G L E+L + RM+ +G+ PD FP VL++C + D+R G VHA +
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
+R G ++ NAL+ MYA+ ++
Sbjct: 224 LRFGFGDEVDVLNALVTMYAKCGDI 248
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N ++L F M+G V P+ F + L +C R G+ +HA
Sbjct: 466 VSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAY 524
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ + Y NAL+++Y +
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVK 546
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I N ++L F M+G V P+ F + L +C R G+ +HA
Sbjct: 665 VSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAY 723
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ + Y NAL+++Y +
Sbjct: 724 VLRCGIGSEGYVPNALLDLYVK 745
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+L+ V + +Q+HA+I K + ++ ++LL Y + + + L L+
Sbjct: 54 ILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRV 113
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+W +II + GL +L FV M+ +GV PD+ V P+V K+C L FG
Sbjct: 114 R-NVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRG 172
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH +++ G+ ++ ++L +MY + +D V D+IPE
Sbjct: 173 VHGYVLKAGLHDCVFVASSLADMYGKCGVLD------------------DARMVFDEIPE 214
Query: 188 RN 189
RN
Sbjct: 215 RN 216
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +CT LV FG S+H
Sbjct: 490 ISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGY 549
Query: 132 IIR 134
IIR
Sbjct: 550 IIR 552
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H + K + F+ S L +Y ++ D+ + D + VAW +++
Sbjct: 170 GRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEI-PERNVVAWNALMVGYV 228
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG+ E++ M G+ P + L + + G+ HA I G++LD
Sbjct: 229 QNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNI 288
Query: 143 TNNALMNMYAQSQNMDMH--IYDRFQG 167
+++N Y + ++ I+DR G
Sbjct: 289 LGTSILNFYCKVGLIEYAEMIFDRIIG 315
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T ++L S+ + +Q+HA K + F+ S L+ +Y + D+
Sbjct: 324 MPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKK 383
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D T V W +++ QN L E++ F M + + D F SVL +C L
Sbjct: 384 VFD-FSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLD 442
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G VH I+ +D DL+ NA+++MY++ +D+
Sbjct: 443 SLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDV 481
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+H+ K+ L ++ IS L+ IY L+ D+ LL + V W + I
Sbjct: 649 GKQVHSYTLKSALLNQDTSLGIS-LVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISG 707
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG +SL F RM V D F SVLK+C+ + G+ +H II+ G
Sbjct: 708 YAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSY 767
Query: 141 LYTNNALMNMYAQ 153
+ALM+MY++
Sbjct: 768 ETAASALMDMYSK 780
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D+ LL ++ P+ VAW ++I +Q+GL E + M G+ P + F S+L +
Sbjct: 279 DARTLLKRIQMPST-VAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAA 337
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ F G+ +HA ++ G+D +++ ++L+N+Y +
Sbjct: 338 ASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVK 374
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK I + K++H I K+ + S L+ +Y+ V S + L
Sbjct: 735 TFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKEL 794
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K + W S+I +NG E+L F +M S + PD VL +C+
Sbjct: 795 KNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACS-------- 846
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA +I G +L +++ +Y +D H G GG EV+D++
Sbjct: 847 ---HAGLISEGRNL----FDSMSQVYGIVPRVD-HYACLIDLLG-RGGHLQEAQEVIDQL 897
Query: 186 PERNGNVELSSGLAGC--NKFEKR 207
P R V ++ LA C +K E+R
Sbjct: 898 PFRADGVIWATFLAACQMHKDEER 921
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L +++ + +Q+H K F+ + +L +Y+ + D L +L
Sbjct: 430 TFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAI-DVAKALFSL 488
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I N E++ RM G+ PD F + + +C+ + G
Sbjct: 489 IPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETG 548
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H I+ V + ++L+++Y++
Sbjct: 549 KQIHCASIKYNVCSNHAVGSSLIDLYSK 576
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T IN N I+ KQ+H K ++ + S L+ +Y+ F V S +L
Sbjct: 531 SFATAINACSN---IRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 587
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + V ++I QN E++ F +++ G P + F S+L CT V
Sbjct: 588 AHVDASSM-VPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSS 646
Query: 123 RFGESVHACIIR 134
G+ VH+ ++
Sbjct: 647 VIGKQVHSYTLK 658
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ + G L E+L + RM+ +G PD FP VL+SC + D G VHA +
Sbjct: 162 SWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHV 221
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+R G+ +++ NAL+ MYA+ +++
Sbjct: 222 LRFGLGVEVDVLNALVTMYAKCGDVE 247
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L++ + + +++HA + + +++ L+ +Y V + + D +
Sbjct: 197 TFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGM 256
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I +N L F+ M+ V P+ SV + LL D F
Sbjct: 257 SL-TDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFA 315
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +HA ++ G D+ N+L+ MY+ M
Sbjct: 316 KEIHALAVKRGFATDVAFCNSLIQMYSSLGRM 347
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRC 80
Q +Q+HA + T SR L+++L+ + + + + L L P P + S+I+
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLF--LSVPLPDDFLFNSVIKS 81
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ L + + + RM+ S V P + F SV+KSC L R G+ VH + G LD
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
Y AL+ Y++ +M+ G R +V D++PE++
Sbjct: 142 TYVQAALVTFYSKCGDME-------------GAR-----QVFDRMPEKS 172
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ QNGL E++ F +M SG PD F S+L +C G VH
Sbjct: 174 VAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
II G+DL++ AL+N+Y++ G EV DK+ E N
Sbjct: 234 IISEGLDLNVKLGTALINLYSRC------------------GDVGKAREVFDKMKETN 273
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
TP+P V W +IR + G L ++ RM+ +G PDH P VLK+C L +R G
Sbjct: 123 TPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGS 182
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ H I G + +++ NAL+ MY++ +++
Sbjct: 183 AFHGLICCNGFESNVFICNALVAMYSRCGSLE 214
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P V W ++I +Q G E+L F +MI SG P+ SVL +C L F G
Sbjct: 370 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 429
Query: 128 VHA-----CIIRL-----GVDLDLYTNNALMNMYAQSQN 156
+HA C++ L G D DL NAL++MY++ ++
Sbjct: 430 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL----------EPNSRFLISRLLFIYNNFNLV 55
T+I++L S+ SQ ++HA K E + + L+ +Y+
Sbjct: 410 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 469
Query: 56 HDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSV 112
+ + D + V W +I Q G ++L FV MI GV P+ +
Sbjct: 470 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 529
Query: 113 LKSCTLLVDFRFGESVHACIIR--LGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ-- 166
L +C L R G+ +HA ++R + N L++MY++ ++D H++D
Sbjct: 530 LMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 589
Query: 167 ----------GFGFNGGREASVHEVLDKI 185
G+G + GR + ++ DK+
Sbjct: 590 SAISWTSMMTGYGMH-GRGSEALDIFDKM 617
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+ +HA I K+ + + +L +Y V D+ D + P +W +I+
Sbjct: 373 RSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEP-DTFSWNTILSAFYS 431
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ L F +M G + + SVL+ CT L++ RFG VHACI++ G+ D
Sbjct: 432 GSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDV 491
Query: 144 NNALMNMYAQS 154
+ L++MYAQS
Sbjct: 492 SRMLVDMYAQS 502
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 18 KTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+T + ++LHA++ ++ L P++ FL+ LL +Y + D+ + D + VAW +
Sbjct: 64 RTLRRGQELHARLLRSALHPDT-FLLDSLLNMYCKCGRLVDARRVFDGMPHR-DIVAWTA 121
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL- 135
+I T G ++L F RM G+ P+ SVLK+C+ +F VH +++L
Sbjct: 122 MISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLN 181
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G+D D Y ++L+ Y +D
Sbjct: 182 GLD-DPYVGSSLVEAYTSCGELD 203
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +LK + + + +HA + K L S L+ +Y+ ++ +
Sbjct: 251 SKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVF 310
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ P V ++I C ++ + E+L FV+M G GV P+H +F + + D
Sbjct: 311 IRIDEP-DVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDA 369
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SVHA I++ G + +A++NMY +
Sbjct: 370 NLCRSVHAYIVKSGFAMLKGVGDAILNMYVK 400
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK Q+H Q+ K + ++ S L+ Y + + + +L L
Sbjct: 153 TLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGL 212
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +++ ++G + +++ SG P+VLK C L ++G
Sbjct: 213 PERSD-VSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYG 271
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+SVHA +I+ G++ D N+ L+ MY++
Sbjct: 272 QSVHASVIKRGLETDNVLNSCLVEMYSR 299
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK VS+ +HA ++K F+ + L+ Y+ V + + D +
Sbjct: 110 LLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK- 168
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++ C +N +SL F +M G P++ + LKSC L F+ G+SVH
Sbjct: 169 DMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVH 228
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQS 154
C +++ D DLY AL+ +Y +S
Sbjct: 229 GCALKVCYDRDLYVGIALLELYTKS 253
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W +I Q+ E+L F RM S V P++ F SVL++C LV G +H+
Sbjct: 272 IPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHS 331
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C++++G+D +++ +NALM++YA+ ++
Sbjct: 332 CVLKVGLDSNVFVSNALMDVYAKCGEIE 359
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S+ + Q+H+ + K ++ F+ + L+ +Y + +S+ L T
Sbjct: 309 TFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF-TG 367
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T VAW +II Q G ++L F M+G + P + SVL++ LV G
Sbjct: 368 STEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPG 427
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H+ I+ + D N+L++MYA+ +D
Sbjct: 428 RQIHSLTIKTMYNKDSVVANSLIDMYAKCGRID 460
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ S+ +Q+H+ KT+ + + L+ +Y + D+ D +
Sbjct: 410 TYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKM 469
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I + +GL +E+L F M S P+ F VL +C+
Sbjct: 470 DKQ-DEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACS 520
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ + N+L+ + + + K LH I K F + LL Y +F + D+ L D
Sbjct: 3 SHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFD 62
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ V++ ++ + +++ + +R+ G + VF ++LK LLV
Sbjct: 63 EMPL-TNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLK---LLVSMD 118
Query: 124 FGE---SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ SVHA + +LG D + AL++ Y+ N+D
Sbjct: 119 LADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVD 156
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRC 80
+ + LHA + + ++L+ Y + ++ L D K P + W +
Sbjct: 821 RGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFD--KIPNTNIRRWIVLTGA 878
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C + G E+L+ F M G+ P+ V PS+LK+C L D R GE++H I++ + D
Sbjct: 879 CARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESD 938
Query: 141 LYTNNALMNMYAQSQNMD 158
Y +AL+ MY++ +++
Sbjct: 939 AYIISALIYMYSKCGHVE 956
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+I + KQLHA + K + + + LL +Y+ ++ ++ + ++L+ ++W
Sbjct: 226 TISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQ-RNIISWT 284
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+ I Q+G ++L F M SG+ P+ F VL SC + DF G H +I+
Sbjct: 285 ASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKK 344
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G+ ++ A+++MY+ MD
Sbjct: 345 GMASGVFVGTAIIDMYSGLGEMD 367
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QN E F M+ G P S+L +CT + + R G+ +H
Sbjct: 1041 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 1100
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ +GV+ D+Y +AL++MYA+
Sbjct: 1101 AMVIGVEKDVYVRSALVDMYAK 1122
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++ H + K + F+ + L+ +Y V ++ + D + T +I
Sbjct: 132 GRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKM-TSLDAATCNCLISAYA 190
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NG V++ F+++ G P+H + ++L C + + G+ +HA ++++ +
Sbjct: 191 RNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETA 250
Query: 143 TNNALMNMYAQSQNMD 158
NAL+ +Y++ M+
Sbjct: 251 VGNALLTLYSKCGMME 266
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/136 (16%), Positives = 63/136 (46%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ H Q+ K + F+ + ++ +Y+ + ++ + A V+W ++I
Sbjct: 334 GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYV 393
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
N + +++ F RM+ V + + ++ K+C+ +H+ +I+ V+ +L+
Sbjct: 394 LNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLH 453
Query: 143 TNNALMNMYAQSQNMD 158
++L+ Y Q +++
Sbjct: 454 VASSLIEAYTQCGSLE 469
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N+ K S + + Q+H+++ K+ ++ + S L+ Y + +++ + +
Sbjct: 419 TYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQI 478
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ A V+W SII+ +QNG +++ +MI G P F +VL +C+
Sbjct: 479 -SDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS 529
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
TP+P V W +IR + G L ++ RM+ +G PDH P VLK+C L +R G
Sbjct: 116 TPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGS 175
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ H I G + +++ NAL+ MY++ +++
Sbjct: 176 AFHGLICCNGFESNVFICNALVAMYSRCGSLE 207
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P V W ++I +Q G E+L F +MI SG P+ SVL +C L F G
Sbjct: 363 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 422
Query: 128 VHA-----CIIRL-----GVDLDLYTNNALMNMYAQSQN 156
+HA C++ L G D DL NAL++MY++ ++
Sbjct: 423 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL----------EPNSRFLISRLLFIYNNFNLV 55
T+I++L S+ SQ ++HA K E + + L+ +Y+
Sbjct: 403 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 462
Query: 56 HDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSV 112
+ + D + V W +I Q G ++L FV MI GV P+ +
Sbjct: 463 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 522
Query: 113 LKSCTLLVDFRFGESVHACIIR--LGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ-- 166
L +C L R G+ +HA ++R + N L++MY++ ++D H++D
Sbjct: 523 LMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 582
Query: 167 ----------GFGFNGGREASVHEVLDKI 185
G+G + GR + ++ DK+
Sbjct: 583 SAISWTSMMTGYGMH-GRGSEALDIFDKM 610
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S++ C NG E+L F M G++PD V +VL +C L FG+ VHA
Sbjct: 34 ISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHAN 93
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ G+ L +N+L++MYA+
Sbjct: 94 FLKSGLGSSLSVDNSLVSMYAK 115
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA K+ +S + + L+ +Y + D+ + D+++ + W ++I
Sbjct: 87 GKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALIVGYA 145
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
QNG ESL + MI SGV PD F +L +C+
Sbjct: 146 QNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F+ +E + + + L+ ++ D+ L L + W +++ TQNGL +
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQ-LMVDRDSITWTTMVTGLTQNGLQL 260
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F RM GV D F S+L +C L G+ +HA I R + +++ +AL+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALV 320
Query: 149 NMYAQSQNMDM 159
+MY++ +++ +
Sbjct: 321 DMYSKCRSIRL 331
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 14/206 (6%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ + KQ+HA I +T ++ F+ S L+ +Y+ + + + +
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I QN E++ F M G+ PD SV+ SC L G
Sbjct: 340 -TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDRFQGFGFNGGREASVHEVLD 183
H + G+ + +NAL+ +Y + ++ D H ++D E S H+ +
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD-----------EMSFHDQVS 447
Query: 184 KIPERNGNVELSSGLAGCNKFEKRVV 209
G + + FEK +V
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLV 473
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 8 INLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVH-DSLCLL--D 63
INLL +++ Q KQ+HA I P S L + L+ Y F H S C L
Sbjct: 58 INLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQ--HPGSFCSLFNQ 115
Query: 64 TLKTPAPPVAWKSIIRC--CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
T + W ++IR NG + + RM+ GV D + FP VLK C+ D
Sbjct: 116 TFQNCRTAFLWNTLIRAHSIAWNGTF-DGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G VH + +LG D D+Y N L+ +Y N G +
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYG------------------NCGFLNDARRL 216
Query: 182 LDKIPERN 189
D++PER+
Sbjct: 217 FDEMPERD 224
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII G ++L F MI +G P+ S+L L F+ G+ +H
Sbjct: 328 VSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGF 387
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+R+G + D++ N+L++MYA+S
Sbjct: 388 SMRMGTETDIFIANSLIDMYAKS 410
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I N L +E++ ++M +G P+ F +VL +C L G+ +HA
Sbjct: 429 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 488
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+R+G+ DL+ +N+L++MYA+
Sbjct: 489 GVRIGLTSDLFVSNSLIDMYAK 510
Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ ++H +FK ++ + LL +Y N ++D+ L D + V+W +II
Sbjct: 177 KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMP-ERDVVSWNTIIGLL 235
Query: 82 TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ NG E+ + MI S + P+ S+L L D +H +++G+D
Sbjct: 236 SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 295
Query: 141 LYTNNALMNMYAQ 153
+ T NAL++ Y +
Sbjct: 296 VTTCNALVDAYGK 308
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N+L + K++HA + + F+ + L+ +Y +H + + +T
Sbjct: 465 TFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS 524
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V++ +I ++ ++SL F M G PD F V+ +C L + G
Sbjct: 525 RKD--EVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 582
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ VH +R + L+ +N+L++ Y + +D+
Sbjct: 583 KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDI 616
>gi|388493872|gb|AFK35002.1| unknown [Lotus japonicus]
Length = 219
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+HA + + F+ ++L+ Y + +H + +L + P + S+IR
Sbjct: 52 RQIHAHTIRLGISRNDFIKTKLVSCYASCAQLHQA-NILFSFTNRQPTFLFNSLIRANAS 110
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
L +SL+ F +M+ S D P VLKSC L R G+ VH ++ G LDL
Sbjct: 111 LNLFSQSLSLFRQMLRSWKPFDRQTLPVVLKSCAGLTALRLGQQVHGAVLVNGYGLDLAN 170
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+NAL++MY + G V D +P+RN
Sbjct: 171 SNALIDMYGKC------------------GVLYCARRVFDGMPQRN 198
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ + L+ +Y L+H + L D + T V+W S+I G E+ F +M
Sbjct: 124 FVQNALIAVYVVCGLIHCARKLFDDI-TDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE 182
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD- 158
G+ PD F ++L C+ D G VH CI GV +D+ NAL++MYA+ N+
Sbjct: 183 WGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHS 242
Query: 159 -MHIYDRFQ------------GFGFNGGREASVHEVLDKIPERN 189
I+DR Q + +G E + ++ D++P +N
Sbjct: 243 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVA-RQIFDQMPGKN 285
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C + G E+L F +M S V PD S+L +C+ L D G+ +H
Sbjct: 287 VSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 346
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ + N+L++MYA+
Sbjct: 347 ILSNKGAYGVTLYNSLIDMYAK 368
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP-PVAWKSII 78
K LHAQI N + +L+ +F V D+ L + P P + S+I
Sbjct: 5 KLLHAQIILHGLTNETLTLGKLI----SFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
R + + ++++ F RMI SG+ P+ P VLK+C + VH I+LG+
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 139 LDLYTNNALMNMY 151
++ NAL+ +Y
Sbjct: 121 SLVFVQNALIAVY 133
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK + + S+ K++HA + KT + ++ + LL +Y + V D+ L D + P
Sbjct: 80 MLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGM--PH 137
Query: 70 PPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+A W +++ N VE L F RM+ G+ DH V +C + FG+ V
Sbjct: 138 RDLASWNTLLGAYNDNA--VEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEV 195
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H +I++G+ L +NAL+ +Y + MD
Sbjct: 196 HGYVIKVGIRPALSLSNALLGVYTKCGEMD 225
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
W +IR +++ + ++ + I G V+PD +P++LK+C + G+ VHA +
Sbjct: 41 WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100
Query: 133 IRLGVDLDLYTNNALMNMYAQS 154
+ G+D D+Y NAL+++Y +
Sbjct: 101 TKTGLDSDVYVGNALLHLYGST 122
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I + +++ F +M V PD SVL +C L D + G H
Sbjct: 272 VSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRF 331
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II+ DL+ AL++MYA+ +++
Sbjct: 332 IIQNNPRQDLFVGTALIDMYAKCGSLE 358
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I QNGL E+L CF+ M G PD L++ L G +H
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479
Query: 132 IIRLGVDLDLYTNNALMNMYAQS------QNMDMHIYDR--------FQGFGFNG-GREA 176
I+ G DL+ NA++ MYA+S +N+ I + G+ NG G+EA
Sbjct: 480 TIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEA 539
Query: 177 SVHEVLDKIPERN---GNVELSSGLAGCN 202
E+ + +P R V + L+ CN
Sbjct: 540 V--ELFEVMPLRGIIPDEVTFTGLLSACN 566
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +LK + KQ+H Q FK ++ F+ + L+ +Y F + + + D L
Sbjct: 87 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 146
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII QNG +E+L F M V PD SV+ + T + D G
Sbjct: 147 HDRTV-VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 205
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+S+H + +LG++ + +L MYA+
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAK 233
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 25 QLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRC 80
Q++ Q+ + RFL+ + + + + N H + + P + W +II+
Sbjct: 5 QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAF-----REVSEPDILLWNAIIKG 59
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
TQ ++ + ++ M S V+P+ F VLK+C G+ +H + G +
Sbjct: 60 YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 119
Query: 141 LYTNNALMNMYAQ 153
++ N+L++MYA+
Sbjct: 120 VFVQNSLVSMYAK 132
>gi|222636729|gb|EEE66861.1| hypothetical protein OsJ_23658 [Oryza sativa Japonica Group]
Length = 728
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80
+QLH ++ F+ S L+ +Y L+ + + D T AW +++
Sbjct: 263 GRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAG 322
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG E+L F RM+ GV D SV +C + G VH C+ +L LD
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLD 382
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDR 164
+A+++MYA+ N++ I+DR
Sbjct: 383 APLASAIVDMYAKCGNLEDARSIFDR 408
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95
P+ R + R F HD+ + D T PV W I C + G + + F
Sbjct: 45 PHERASVLRFWVRRRRF---HDARGVFDERPTRTAPV-WTLTISGCARRGRYADGMRAFA 100
Query: 96 RMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M+ G P+ V +V++ C + D G+ VH ++R GV LD+ NA+++MYA+
Sbjct: 101 EMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAK 159
>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g25970-like [Cucumis
sativus]
Length = 704
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 31 FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90
F+ P S LIS +++ +++ + ++LC+ ++L+ V+W SI+ +Q G ++
Sbjct: 333 FEQSVPISNALIS--MYLKSDYGSMKEALCIFESLEFK-DRVSWNSILTGLSQTGSSEDA 389
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
+ F+ M + + DH F +VL+SC+ L F+ G+ +H ++ G++ + + +++L+ M
Sbjct: 390 VKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFM 449
Query: 151 YAQ 153
Y++
Sbjct: 450 YSK 452
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I G L S M G D F S+LK F G+ VH+
Sbjct: 65 VSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSI 124
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II++G ++Y +AL++MYA+ + ++
Sbjct: 125 IIKMGYAENVYAGSALLDMYAKCEKLE 151
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+L++ + T +Q+H K ++ F+ S L+F+Y+ ++ D+ + +
Sbjct: 411 VLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEE-ASKN 469
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W +++ Q+G +L F M V DH F +VL +C+
Sbjct: 470 SSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACS 517
>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Cucumis sativus]
Length = 704
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 31 FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90
F+ P S LIS +++ +++ + ++LC+ ++L+ V+W SI+ +Q G ++
Sbjct: 333 FEQSVPISNALIS--MYLKSDYGSMKEALCIFESLEFK-DRVSWNSILTGLSQTGSSEDA 389
Query: 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150
+ F+ M + + DH F +VL+SC+ L F+ G+ +H ++ G++ + + +++L+ M
Sbjct: 390 VKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFM 449
Query: 151 YAQ 153
Y++
Sbjct: 450 YSK 452
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I G L S M G D F S+LK F G+ VH+
Sbjct: 65 VSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSI 124
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
II++G ++Y +AL++MYA+ + ++
Sbjct: 125 IIKMGYAENVYAGSALLDMYAKCEKLE 151
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+L++ + T +Q+H K ++ F+ S L+F+Y+ ++ D+ + +
Sbjct: 411 VLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEE-ASKN 469
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W +++ Q+G +L F M V DH F +VL +C+
Sbjct: 470 SSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACS 517
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQLHA + KT P S +SR+ + FN L+ L + W + +R
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCA-FNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ ++++ F R+ + PDH VLK+C+ L+D R G+ VH + +LG+ ++
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ N ++++YA G +V DK+P+R+
Sbjct: 149 FLQNMIVHLYALC------------------GEIGVARKVFDKMPQRD 178
>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 501
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T LL+ K ++ K++HAQ+F + +L +LL +Y + + L +
Sbjct: 109 ETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRS 168
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
LK + W ++I Q GL E L + M + + PD F SV ++C+ L
Sbjct: 169 LKI-RDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEH 227
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ HA +I+ + ++ ++AL++MY F+ F+ G H V D+
Sbjct: 228 GKRAHAVMIKRCIKSNIIVDSALVDMY-------------FKCSSFSDG-----HRVFDQ 269
Query: 185 IPERN 189
+ RN
Sbjct: 270 LSTRN 274
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSL 59
+ + +L +L+ V SQAKQ HAQI PN L + LL +Y+ ++ D+
Sbjct: 3 LITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNIT-LQTDLLLVYSKCGVLQDAR 61
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + +W +I N ++L F + G PDH P V K+C +
Sbjct: 62 KVFDKM-VERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGI 120
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
D G+ +H+ +IR+G + + +++++ YA+ +
Sbjct: 121 GDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGL 158
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 4/150 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDT 64
TL + K I K LH+ + + + S +L Y LV C ++
Sbjct: 109 TLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNM 168
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V W +I + ++L CF M+ GV D PS+L C D
Sbjct: 169 --SWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMK 226
Query: 125 GESVHACIIRLGV-DLDLYTNNALMNMYAQ 153
G+ +H +++ + ++ N+L++MYA+
Sbjct: 227 GKEIHGQVVKNQIFGCEVAIGNSLIDMYAK 256
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++ + +T++ P + W ++ R + V +L +V MI G+ P+ FP +LKSC
Sbjct: 16 AISVFETIQEPNLLI-WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCA 74
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDR----------- 164
L + G +H +++LG +LDLY + +L++MY Q++ + D H ++DR
Sbjct: 75 KLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134
Query: 165 -FQGFGFNGGREASVHEVLDKIPERN 189
G+ G E S + D+IP ++
Sbjct: 135 LVTGYASRGYIE-SARNMFDEIPVKD 159
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +V+ + G VH+
Sbjct: 161 VSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSW 220
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NAL++ Y++ M+
Sbjct: 221 IADHGFGSNLKIVNALIDFYSKCGEME 247
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++++L ++ +Q+H + KT + + + L+ +Y V DS + D +
Sbjct: 111 SIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEI 170
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W +II ++L F MI GV P+ F S+L L F FG
Sbjct: 171 -SERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG 229
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H +R G++ D++ NAL++MYA+S GR V ++I
Sbjct: 230 KEIHGFSLRFGLESDIFVANALIDMYAKS------------------GRSLQASNVFNQI 271
Query: 186 PERN 189
E+N
Sbjct: 272 GEKN 275
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++H +FK + F+ + LL Y N + D + D + V+W S+I
Sbjct: 25 KGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM-LERDVVSWNSVIGVF 83
Query: 82 TQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ +G E++ F M + SG P+ SVL C L D G +H +++ G+D
Sbjct: 84 SVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQ 143
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG 190
+ NAL+++Y + G V D+I ERNG
Sbjct: 144 VTVGNALVDVYGKC------------------GYVKDSRRVFDEISERNG 175
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ QN L + ++ +M G P+ F +VL +C + R G+ +HA
Sbjct: 277 VSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHAR 336
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IR G +DL+ +NAL +MYA+
Sbjct: 337 AIRTGSSVDLFVSNALTDMYAK 358
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
GV D + FP VLK+C + + G +H + +LG D D++ N L+ Y
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYG 53
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN---FNLVHD--SLC 60
T N+L I K++HA+ +T F+ + L +Y NL +
Sbjct: 313 TFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKIS 372
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L D + + + C ESL F+ M G+ D + V+ +C L
Sbjct: 373 LRDEVSYNILIIGYSQTTNCS-------ESLRLFLEMGIKGMKLDVVSYMGVISACANLA 425
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ G+ VH +R + L+ NAL++ Y + +D+
Sbjct: 426 ALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDL 464
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 16/149 (10%)
Query: 25 QLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H I L+P+++ + + LF + + V + D+++ P V W S+IR T+
Sbjct: 23 QVHGSLIVSGLKPHNQLINAYSLFQRQDLSRV-----IFDSVRDPGV-VLWNSMIRGYTR 76
Query: 84 NGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
GL E+L F M G+ PD F LK+C +DF+ G +H I +G++ D+Y
Sbjct: 77 AGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVY 136
Query: 143 TNNALMNMYAQSQNM--------DMHIYD 163
AL+ MY +++++ MH+ D
Sbjct: 137 IGTALVEMYCKARDLVSARQVFDKMHVKD 165
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q G E+++ F M+ + P+ SVL+ C + R G+S+H
Sbjct: 367 VSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCY 426
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ ++ +L T A+++MYA+
Sbjct: 427 AIKADIESELETATAVISMYAK 448
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 68/150 (45%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T++ +L+ ++ ++ QI K + + L+ ++ + + ++ L D
Sbjct: 502 SRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFD 561
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
V+W ++ +G E++ F +M P+ F +++++ L R
Sbjct: 562 KCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALR 621
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G SVH+ +I+ G N+L++MYA+
Sbjct: 622 VGMSVHSSLIQCGFCSQTPVGNSLVDMYAK 651
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + K +H K + + ++ +Y +L + L
Sbjct: 403 TLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERL 462
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VA+ ++ + TQ G ++ + M GV PD +L++C D+ G
Sbjct: 463 PIK-DAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARG 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V+ II+ G D + + +AL+NM+ +
Sbjct: 522 SCVYGQIIKHGFDSECHVAHALINMFTK 549
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L ++LK V + + K +H KTL + LL +Y + D+ + +
Sbjct: 265 ALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMI 324
Query: 66 KTPAPPVAWKS-IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V S +I Q+ ++ F+R++ S V P+ SVL++CT +V F
Sbjct: 325 --PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDF 382
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H I++G + DL+ NALM+ YA+ +MD
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L +LK +++ A +H+ +K ++ F+ S L+ Y+ +LV D+ + + +
Sbjct: 164 VLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI 223
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ C ++N + F +M SG P+ SVLK+ L G
Sbjct: 224 -VRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLG 282
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H C I+ D + + AL++MYA+
Sbjct: 283 KGIHGCAIKTLNDTEPHVGGALLDMYAK 310
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H K + F+ + L+ Y N + SL + +L+ A V+W +I+ +
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD-ANEVSWNTIVVGFS 441
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+GL E+L+ F M + + + SVL++C R +H I + + D
Sbjct: 442 QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTV 501
Query: 143 TNNALMNMYAQ------SQNMDMHIYDR--------FQGFGFNGGREASVHEVLDKIPER 188
N+L++ YA+ + + H+ +R G+ + G+ A E+ D++ +
Sbjct: 502 IGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALH-GQAADALELFDRMNKS 560
Query: 189 N 189
N
Sbjct: 561 N 561
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 113 LKSCTLLVDFRFGESVHACIIRLGV--DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF 170
L+ C D R G +VH ++R G LDL+ N L+NMY +
Sbjct: 66 LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKL---------------- 109
Query: 171 NGGREASVHEVLDKIPERN 189
G AS + D++PERN
Sbjct: 110 --GPLASARRLFDRMPERN 126
>gi|26450964|dbj|BAC42589.1| unknown protein [Arabidopsis thaliana]
Length = 171
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V ++ Q+HA + L+ +L+ Y+ FNL +++ +++
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN-SDI 106
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N L E + + RM+ G+ PD +PSVLK+C +D FG V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166
Query: 129 HACI 132
H I
Sbjct: 167 HGSI 170
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q K +HA++ + +L++ +L +F + S + +K P W ++IR
Sbjct: 30 NQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNI-FLWNTMIRG 88
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+++ + M G G P++ P VLK+C +D R G +H+ +++ G D D
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +L+++Y + N D +V D IP++N
Sbjct: 149 VFVKTSLLSLYVKCDNFD------------------DALKVFDDIPDKN 179
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H+ + K + F+ + LL +Y + D+L + D + V+W +II +
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV-VSWTAIITGYISS 193
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F +++ G+ PD VL +C L D GE + I G+ +++
Sbjct: 194 GHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253
Query: 145 NALMNMYAQSQNMD--------------MHIYDRFQGFGFNG 172
+L++MY + N++ + QG+ FNG
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNG 295
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK +K + KQLH K ++ ++ L+ +Y N V + + D +
Sbjct: 137 TFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKI 196
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P VA+ +II C +N E+L F + SG+ P L SC LL G
Sbjct: 197 GEPCV-VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG 255
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H + + G D + N AL++MYA+ ++D
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLD 288
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ ++++L+ S++ + KQ+ A KT + N L + F +N +
Sbjct: 35 SSSILSLIPKCTSLR---ELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRM 91
Query: 64 TLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P P + + ++ R + + ++ +++ SG+ PD F S+LK+C L
Sbjct: 92 FDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKAL 151
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H ++LGV ++Y L+NMY ++D
Sbjct: 152 EEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVD 187
>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
Length = 481
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H +++ +I+ L+ +Y + + + L D ++ V+W ++I
Sbjct: 256 GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYR-NLVSWTTMISGYM 314
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++T F M +G PD S+L SC L G +HA +I+ ++ D Y
Sbjct: 315 QNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEY 374
Query: 143 TNNALMNMYAQSQNM 157
NAL++MYA+ +++
Sbjct: 375 VKNALIDMYAKCEHL 389
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-I 98
FL + LL Y+N + D+ L D + V+W S+I TQ+G +++ F
Sbjct: 70 FLTNLLLRGYSNLGRLRDARHLFDRMPHR-NLVSWGSVISMYTQHGRDDCAISLFAAFQK 128
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
S P+ + SVL++CT GE VH ++L +D ++Y AL+N+YA+ MD
Sbjct: 129 ASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMD 188
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L ++L+ K S +Q+H K + ++ + L+ +Y + +++ + L
Sbjct: 139 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 198
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P V W ++I Q G +L F RM GV PD V S + +C+ L G
Sbjct: 199 VRTP-VTWNTVITEYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 257
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+H R + D N L+++Y + +
Sbjct: 258 QIHGYAYRSATETDTSVINVLIDLYCKCSRL 288
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V+ + +Q +Q+HAQ + + ++L++ Y+ + + D+ L D + V+W
Sbjct: 70 VNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGM-CVRDSVSW 128
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ + G + F +I G PD+ P V+++C L + + G +H + +
Sbjct: 129 SVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK 188
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
G+DLD + AL++MY + + ++ ++D+ Q
Sbjct: 189 FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQ 222
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q +Q+H Q + + ++L+ Y+ + + D+ L D + V+W ++
Sbjct: 752 TQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGM-CVRDSVSWSVMVGG 810
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G + F +I G PD+ P V+++C L + + G +H + + G+DLD
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870
Query: 141 LYTNNALMNMYAQSQNMD 158
+ AL++MY + + ++
Sbjct: 871 HFVCAALVDMYGKCREIE 888
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +++ +K + +H ++K F+ + L+ +Y + D+ L D +
Sbjct: 162 TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 221
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +I + G ESL F +M GV PD +V+ +C L
Sbjct: 222 Q-ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 280
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
+ I R LD+ A+++MYA+ ++ I+DR + +G++
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340
Query: 172 G-GREASVHEVLDKIPERNGNVELSSGL 198
G GR+A LD P + LSSG+
Sbjct: 341 GQGRKA-----LDLFP-----MMLSSGM 358
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +++ +K + +H ++K F+ + L+ +Y + D+ L D +
Sbjct: 838 TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM 897
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +I + G ESL F +M GV PD +V+ +C L
Sbjct: 898 -XERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 956
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFN 171
++ I R LD+ A+++M+A+ ++ I+DR + +G++
Sbjct: 957 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 1016
Query: 172 G-GREA 176
G GR+A
Sbjct: 1017 GQGRKA 1022
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q K +HA++ + +L++ +L +F + S + +K P W ++IR
Sbjct: 30 NQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNI-FLWNTMIRG 88
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+++ + M G G P++ P VLK+C +D R G +H+ +++ G D D
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +L+++Y + N D +V D IP++N
Sbjct: 149 VFVKTSLLSLYVKCDNFD------------------DALKVFDDIPDKN 179
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H+ + K + F+ + LL +Y + D+L + D + V+W +II +
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV-VSWTAIITGYISS 193
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F +++ G+ PD VL +C L D GE + I G+ +++
Sbjct: 194 GHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253
Query: 145 NALMNMYAQSQNMD--------------MHIYDRFQGFGFNG 172
+L++MY + N++ + QG+ FNG
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNG 295
>gi|302773067|ref|XP_002969951.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
gi|300162462|gb|EFJ29075.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
Length = 789
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S + L L+ S+ Q +++H ++ ++ + FL + LL +Y D+
Sbjct: 12 VDSWRDLARLVDESTSL---DQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAEL 68
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
LLD + V+W ++IR Q G SL F RM+ G PD VF S++K+ +
Sbjct: 69 LLDRMPRR-NAVSWNAVIRANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKAPGTIQ 127
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+ GE V + G D AL+ MY + +D +DR Q G
Sbjct: 128 E---GEIVQDFAKKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERG 175
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I +NG + E+L + RM + PD F +VL++C D GES+H
Sbjct: 281 SWNTMIAAFAKNGHVFEALDLYGRMT---IRPDGVTFVNVLEACDCPDDLERGESIHRDA 337
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
G D DL AL++MY + +D
Sbjct: 338 RAHGYDSDLIVATALVSMYRRCGRLD 363
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ I K+ + ++ S L+ +Y+ V+D+ + D + V+W S+I C QN
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM-GDRNVVSWNSLITCFEQN 231
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR-LGVDLDLYT 143
G VE+L F M+ S V PD SV+ +C L + G+ VH +++ + D+
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 144 NNALMNMYAQ 153
+NA ++MYA+
Sbjct: 292 SNAFVDMYAK 301
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E+L+ F + V P H F ++LK+C L + G H
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 132 IIRLGVDL------DLYTNNALMNMYAQ 153
+++ G D++ N+L++MY +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 37/177 (20%)
Query: 17 IKTKSQA---KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV- 72
IK+K A + +HA + K+ N F+ +RL+ Y+ + D + D K P +
Sbjct: 30 IKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFD--KMPQRNIY 87
Query: 73 AWKSIIRCCTQNGLL-------------------------------VESLTCFVRMIGSG 101
W S++ T+ G L E+L F M G
Sbjct: 88 TWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEG 147
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ F SVL +C+ L D G VH+ I + D+Y +AL++MY++ N++
Sbjct: 148 FVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQLHA + KT P S +SR+ + FN L+ L + W + +R
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCA-FNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ ++++ F R+ + PDH VLK+C+ L+D R G+ VH + +LG+ ++
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ N ++++YA G +V DK+P+R+
Sbjct: 149 FLQNMIVHLYALC------------------GEIGVARKVFDKMPQRD 178
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 22/176 (12%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
+K+ QAKQ H + + +LI+ L + ++ + + +TP P + +
Sbjct: 12 GLKSLHQAKQCHCLLLRLGLHQDTYLIN--LLLRSSLHFAATQYATVVFAQTPHPNIFLY 69
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-FRFGESVHACII 133
++IR N ++++ + M G PD+ FP VLK+CT L F G S+H+ +I
Sbjct: 70 NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ G D D++ L+ +Y+++ G +V D+IPE+N
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKN------------------GFLTDARKVFDEIPEKN 167
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH+ + KT F+ + L+ +Y+ + D+ + D + V+W +II ++G
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEK-NVVSWTAIICGYIESG 182
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L F ++ G+ PD +L +C+ + D G + + G +++
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242
Query: 146 ALMNMYAQSQNMD 158
+L++MYA+ +M+
Sbjct: 243 SLVDMYAKCGSME 255
>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + ++K K +H + K+ ++ + LL +Y +LV DSL + +
Sbjct: 269 TYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCI 328
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V+W S+I QNG +L F +M+ + P+ S L+ C+ L F G
Sbjct: 329 EYP-NQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEG 387
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H + + G D D Y + L+++Y + DM
Sbjct: 388 RQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDM 421
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL ++ K + + +A++ H + LE ++ F+ S L+ +Y F ++ +LD
Sbjct: 167 TLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDR 226
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V ++I +Q G E++ F M+ V P+ + SVL SC L D
Sbjct: 227 VE-EKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN 285
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +++ G + L + +L+ MY + +D
Sbjct: 286 GKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 319
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T+ ++L V + + A +H K F+ + L+ +Y ++ ++ C+
Sbjct: 169 TVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFH 228
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++ V W SII C Q G +L F M GSGV PD S+ + D R
Sbjct: 229 GMEC-RDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGR 287
Query: 124 FGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMD 158
+S+H ++R G D+ D+ NA+++MYA+ N++
Sbjct: 288 SAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIE 323
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 19 TKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
+ + A QLHA + L S F L+ Y F + ++ + D + P AW ++
Sbjct: 82 SNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVP-AWNAM 140
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ +N E++ F RM+G GV D SVL C LL D +H ++ G+
Sbjct: 141 LSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGL 200
Query: 138 DLDLYTNNALMNMYAQ 153
D +L+ NAL+++Y +
Sbjct: 201 DKELFVCNALIDVYGK 216
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL++L AK LH + + + + + ++ +Y + + + + D+
Sbjct: 272 TLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDS 331
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFR 123
+ V+W ++I QNGL E++ + M G+ F SVL + + L +
Sbjct: 332 MPVQ-DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQ 390
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +HA I++G+++D+Y L+++YA+
Sbjct: 391 QGMRMHALSIKIGLNVDVYVGTCLIDLYAK 420
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L + Q ++HA K ++ + L+ +Y + +++ L + +
Sbjct: 375 TFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKM 434
Query: 66 --KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++ P W +II +G E+LT F RM G+ PDH F S+L +C+
Sbjct: 435 PRRSTGP---WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS 485
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
+ ++ AK LH+ I K+ N F+++ ++ +Y+ + + D+ + D + V+W
Sbjct: 14 IRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMP-HRNIVSW 72
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
+++ T + + E+L+ + MI S + P+ ++ +VLK+C L+ + G+ VH I
Sbjct: 73 TTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIF 132
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
+ +D+D+ NAL++MY +
Sbjct: 133 QAKLDVDIVLMNALLDMYVK 152
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ S A Q+H + + + S L+ IY ++++L L + L
Sbjct: 348 VLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDK- 406
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
VAW S+I C + G + + F+ MI G+ DH V VLK+C+ L + G+ VH
Sbjct: 407 DVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVH 466
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ ++ G + + AL++MYA+ +++
Sbjct: 467 SLCLKKGYESEGVVTTALIDMYAKCGDIE 495
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL----KTPAPPVAWKSII 78
+++H I K+ +S + IS L+ +Y++ L+ ++ + D W S++
Sbjct: 255 GREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSML 314
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
NG VE+L+ M SGV D F VLK C + VH +I G +
Sbjct: 315 SGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYE 374
Query: 139 LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGL 198
LD + L+++YA+ QG N R + +++P+++ V SS +
Sbjct: 375 LDCVVGSILIDIYAK------------QGSINNALR------LFERLPDKD-VVAWSSLI 415
Query: 199 AGCNKF 204
GC +F
Sbjct: 416 TGCARF 421
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY 103
L+ Y L+ D++ L D K P P V+W SII N +L M G G+
Sbjct: 177 LILGYAKQGLIDDAMKLFD--KMPEPDIVSWNSIIAGLVDNAS-SRALRFVSMMHGKGLK 233
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHI 161
D FPSVLK+C + G +H II+ G + Y +AL++MY+ + + I
Sbjct: 234 MDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKI 293
Query: 162 YDRF 165
+D++
Sbjct: 294 FDQY 297
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK S+ + KQ+H+ K + + + L+ +Y + D+L L L +
Sbjct: 449 VLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCL-SEI 507
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
++W SII C QNG E+++ +MI SG P+ VL +C
Sbjct: 508 DTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTAC 554
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LH+++ T + F+ + L+ +Y+ F V + + D++ P +W+ ++ T
Sbjct: 519 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYP-SWRVMLVALT 577
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG E+L + R+ G P +F + L SCT L D ++H I DL
Sbjct: 578 QNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLV 637
Query: 143 TNNALMNMYAQSQNMD 158
+N LMN+YA+ ++
Sbjct: 638 LSNVLMNVYAKCGELE 653
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L N+L+ +K Q + +H++I + EP S + + L+ +Y + ++ D
Sbjct: 401 ALSNVLQACSRLKNLEQGRAVHSRIASRDFEP-SLMVQTLLVDMYVKCGDLAEARRTFDG 459
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K ++W S+I + E+L F M GV P+ F +V+ +C+ L
Sbjct: 460 FKAR-DVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLP 518
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G ++H+ ++ G D + NAL++MY++ +D
Sbjct: 519 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVD 552
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HA I ++ S + + L+ +Y + D+L + ++++ V W + I C +
Sbjct: 222 RIHALI-RSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDR-DVVIWTAFIAACVYH 279
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G +L F +M G+ ++ F +L +C+ L DF G+++ I LG++ D
Sbjct: 280 GQSGFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQ 339
Query: 145 NALMNMYAQSQNM--DMHIYDRF 165
+ +++++A+ ++ ++DR
Sbjct: 340 DGILSLHARCGSLVGTREMFDRM 362
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 21/222 (9%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN---SRFLISRLLFIYNNFNLVHDSL 59
S+ T ++L S K +H QI + P L + L+ +Y + D+
Sbjct: 96 SSITFTSVLGACCSPDDLETGKAIHRQIGAS-SPQIQADEILQNSLVTMYGKCGSLEDAE 154
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTL 118
+ ++ +W ++I QNG ++ F M+ G V PD + VL +C+
Sbjct: 155 RVFHGIRRK-NAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACST 213
Query: 119 LVDFRFGESVHACIIRLGVD--------LDLYTNNAL----MNMYAQSQNMDMHIYDRFQ 166
L D G +HA I GV+ +DLY + ++ ++ D+ I+ F
Sbjct: 214 LGDLETGMRIHALIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVVIWTAFI 273
Query: 167 GFGFNGGREASVHEVLDKIPERN---GNVELSSGLAGCNKFE 205
G+ E+ K+ NV S LA C+ E
Sbjct: 274 AACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNLE 315
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPAPPVAW 74
+++ S+A+ +H + K+ + ++S +L +Y + ++ + D + T V+W
Sbjct: 613 ALEDVSRARAIHG-VIKSSDFYPDLVLSNVLMNVYAKCGELEEARLVFDQM-TEKNEVSW 670
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I QNG E+L + M V P+ F V+ SC L G+ VHA +
Sbjct: 671 TTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQRVHARLSD 727
Query: 135 LGVDLDLYTNNALMNMYAQ 153
G+ + AL+NMYA+
Sbjct: 728 AGLQNNEVIVTALVNMYAK 746
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 6/155 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L +K + K++H +I +++ L + LL +Y + +S + + +
Sbjct: 1 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I Q+ E+L F RM P F SVL +C D G
Sbjct: 61 ERRTVAT-WNTMITAYVQHDFFQEALEAFRRMDAP---PSSITFTSVLGACCSPDDLETG 116
Query: 126 ESVHACIIRLG--VDLDLYTNNALMNMYAQSQNMD 158
+++H I + D N+L+ MY + +++
Sbjct: 117 KAIHRQIGASSPQIQADEILQNSLVTMYGKCGSLE 151
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I Q G +E+L + M + PD +VL++C+ L + G +VH+
Sbjct: 368 VTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNLEQGRAVHSR 424
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
I + L L++MY + ++ F GF
Sbjct: 425 IASRDFEPSLMVQTLLVDMYVKCGDL-AEARRTFDGF 460
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +LK + KQ+H Q FK ++ F+ + L+ +Y F + + + D L
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 161
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII QNG +E+L F M V PD SV+ + T + D G
Sbjct: 162 HDRTV-VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 220
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+S+H + +LG++ + +L MYA+
Sbjct: 221 KSIHGLVTKLGLEFEPDIVISLTTMYAK 248
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 25 QLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRC 80
Q++ Q+ + RFL+ + + + + N H + + P + W +II+
Sbjct: 20 QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAF-----REVSEPDILLWNAIIKG 74
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
TQ ++ + ++ M S V+P+ F VLK+C G+ +H + G +
Sbjct: 75 YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134
Query: 141 LYTNNALMNMYAQ 153
++ N+L++MYA+
Sbjct: 135 VFVQNSLVSMYAK 147
>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
Length = 720
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80
+QLH ++ F+ S L+ +Y L+ + + D T AW +++
Sbjct: 263 GRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAG 322
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG E+L F RM+ GV D SV +C + G VH C+ +L LD
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLD 382
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDR 164
+A+++MYA+ N++ I+DR
Sbjct: 383 APLASAIVDMYAKCGNLEDARSIFDR 408
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95
P+ R + R F HD+ + D T PV W I C + G + + F
Sbjct: 45 PHERASVLRFWVRRRRF---HDARGVFDERPTRTAPV-WTLTISGCARRGRYADGMRAFA 100
Query: 96 RMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M+ G P+ V +V++ C + D G+ VH ++R GV LD+ NA+++MYA+
Sbjct: 101 EMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAK 159
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y+ D++ L + + A V W +I Q+GL+ ESL F MI SGV P
Sbjct: 276 LLSMYSKCGRFDDAIKLFRMM-SRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP 334
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
D F S+L S + + + +H I+R + LD++ +AL++ Y + + + M
Sbjct: 335 DAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM 389
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDS 58
T + L LL++ ++ Q KQ+HA + + R+L +Y +F+
Sbjct: 29 TLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKM 88
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
LD+ + P W SII + GLL ++L + +M+ GV PD + FP ++K+C
Sbjct: 89 FYRLDSRLSSIRP--WNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVA 146
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
L +F+ E + + LG+D + + ++L+ Y + +D+ ++DR
Sbjct: 147 LKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDR 194
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C Q+ ++ F +M SG+ D + L +C L FG+++H
Sbjct: 504 VSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGF 563
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+I+ + LD+Y+ + L++MYA+ N+ M+++D +
Sbjct: 564 MIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMK 600
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL + + +Q+H I + FL S L+ Y V + +
Sbjct: 338 TFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQC 397
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V + ++I NGL +++L F ++ + P+ S+L L+ + G
Sbjct: 398 NS-VDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLG 456
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H II+ G D A+++MYA+ M++
Sbjct: 457 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNL 490
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 22 QAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSI 77
+ +Q+HA T E + FL ++L+F+Y V D+ L + + PA V +W ++
Sbjct: 75 EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGM--PARTVFSWNAL 132
Query: 78 IRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+ +G E++ + M S G PD SVLK+C D R G VH ++
Sbjct: 133 VGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVK 192
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+G+D NAL+ MYA+ +D + +++ Q
Sbjct: 193 VGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQ 226
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++LK + ++H K S + + L+ +Y L+ +L + + L
Sbjct: 166 TLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWL 225
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ A VA W S++ C QNG +E+L F M +G + +VL+ C L
Sbjct: 226 QQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSL 285
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +HA +++ G +L++ NAL+ MYA+ +D
Sbjct: 286 GRELHAALLKCGSELNIQC-NALLVMYAKYGRVD 318
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + + ++L+ +K+ S KQ+H + + L +RL+ IY SL
Sbjct: 465 MVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLD-LILENRLIDIYGECGEFDHSLN 523
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L ++ V+W S+I CCT NG L ++ F M + + PD S+L + L
Sbjct: 524 LFQRVEKK-DIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLS 582
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYA--QSQNMDMHIYDR 164
G+ VH +IR ++ ++L++MY+ S N + +++R
Sbjct: 583 SLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFER 628
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + S ++LHA + K + LL +Y + V +L + +
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKC-GSELNIQCNALLVMYAKYGRVDSALRVFGQI 327
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W S++ C QN E++ F M+ G PDH S+ + L G
Sbjct: 328 -AEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNG 386
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
HA I+ + DL N LM+MY + +++
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIE 419
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I+ C Q+ E+L + + G+ D + S+L++C L + VH
Sbjct: 434 ISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCY 493
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
IR G+ LDL N L+++Y + D H + FQ
Sbjct: 494 AIRNGL-LDLILENRLIDIYGECGEFD-HSLNLFQ 526
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L+++L + + ++ KQ+H + + P ++S L+ +Y+ ++ ++ + +
Sbjct: 570 ALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERA 629
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K V W ++I +G +++ F RM+ +G+ PDH F ++L +C+
Sbjct: 630 KCK-DVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACS 680
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL-FIYNNFNLVHDSLCLLDTLK 66
+ LL + KT KQ+HA + + + F++S++ F + V + L+
Sbjct: 6 LRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTD 65
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + ++I + + + R++G+G PD FP VLK+CT + + GE
Sbjct: 66 LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYA 152
VH +++G DLY N+L++ Y+
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYS 151
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ T +++L + S K +H ++K + + L+ +Y + ++ L
Sbjct: 202 NVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLF 261
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L V+W SII Q +SL F M SGV PD + SVL +C L
Sbjct: 262 DELP-DRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGAL 320
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYD 163
+G V I R G++ D++ AL++MYA+ M +HI++
Sbjct: 321 DYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFN 363
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I + GL E++ F++M V P+ F SVL +C + G+ VH
Sbjct: 172 VSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGL 228
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN-- 189
+ + + L NAL++MY + + + ++ D++P+R+
Sbjct: 229 VYKRAFGIGLVVGNALVDMYVKCECL------------------CEARKLFDELPDRDIV 270
Query: 190 GNVELSSGLAGCNK 203
+ SGL C +
Sbjct: 271 SWTSIISGLVQCKQ 284
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++LLK + Q K++HA++ + ++ + LL +Y + D+L + + +
Sbjct: 308 AFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLV 367
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I Q+G + E+ F +MI SG+ P+ F S+L +C+ + G
Sbjct: 368 KG-RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQG 426
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H II+ G D AL++MYA+
Sbjct: 427 RQIHDRIIKAGYITDDRVRTALLSMYAK 454
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++ P ++K Q +Q+H +I K + + LL +Y + D+ + + +
Sbjct: 412 SILGACSRPSALK---QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ VAW ++I Q+ ++ F ++ G+ PD + F S+L C G
Sbjct: 469 -SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG 527
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ V + IIR G + DL+ NAL++M+
Sbjct: 528 KWVQSLIIRAGFESDLHIRNALVSMF 553
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L K + +L + I F+ + L+ ++ V D+L + + L
Sbjct: 207 TFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL 266
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I ++ ++ F M GV PD F S+LK+C G
Sbjct: 267 PR-RDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGR 174
+ VHA + +G+D ++Y AL++MY + +M+ D + F GR
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSME----DALEVFNLVKGR 370
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II Q+G + F M SGV PD F +L +C G +HA
Sbjct: 575 VSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHAL 634
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I +D D+ L++MY + ++D
Sbjct: 635 ITEAALDCDVVVGTGLISMYTKCGSID 661
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQI-FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+T +LL+ + K +++H I F ++P+ F+ + L+ +Y + + + D
Sbjct: 105 QTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDI-FMWNMLISMYAKCGNTNSAKQIFD 163
Query: 64 TLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ P V +W ++ Q+ E+ +M+ GV PD F +L +C +
Sbjct: 164 EM--PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNV 221
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G + + I+ G D DL+ AL+NM+ + +D
Sbjct: 222 DKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257
>gi|302799100|ref|XP_002981309.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
gi|300150849|gb|EFJ17497.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
Length = 682
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W I+ C +NG +E+L RMIG G PD F ++L C D G+ HA I
Sbjct: 25 SWTMILAACARNGRNLEALLLVRRMIGEGARPDVVCFVTILDLCAATADLEQGKVAHAWI 84
Query: 133 IRLGVDLDLYT-NNALMNMYAQSQNMDM 159
+ GV+ NAL+NMY + +N+D+
Sbjct: 85 LACGVESSSRVLGNALINMYGKCRNLDL 112
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLFIYN---NFNLVHDSLCLLDTLKTPAPPVAWKSI 77
Q K HA I +E +SR L + L+ +Y N +L ++ V W S+
Sbjct: 76 QGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQDHGRDVVTWNSL 135
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ T NG L E+ F M G+ P VL+SC+ R G+ H ++ LG+
Sbjct: 136 LAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCS---GDRQGKLFHDRVLDLGL 192
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D + N+L+ MYA+ ++
Sbjct: 193 QGDEFLMNSLVKMYARCGRLE 213
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I QN L F +M GV + F S+L +C+ + FG +H
Sbjct: 330 VSWNCLISGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLR 389
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFGF 170
I G++L AL+NMY + Q + + + +R+Q G
Sbjct: 390 ITAAGLELHTVVATALINMYGKCQELQLAQELLERYQSTGL 430
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q K H ++ FL++ L+ +Y + +S + + ++W +I
Sbjct: 179 QGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQ-KDIISWNVMISLE 237
Query: 82 TQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ G E++ + G PD F SV+ +C+ L D ++ + G D D
Sbjct: 238 ARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGDLDLCFTIQELVSSAGFDDD 297
Query: 141 LYTNNALMNMYAQSQNMD 158
L NA++NM+ +S +D
Sbjct: 298 LLLGNAVVNMFGKSGCLD 315
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 23/179 (12%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y+ V D+L L +L + +AW S++ G E+L +M GV P
Sbjct: 506 LLGMYSKCGCVDDALAALQSLSSRGL-LAWTSMLAAYAHVGRASEALRVLGQMQHDGVVP 564
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQSQNMDMHIYD 163
D F +V+ +C+ +H ++RL V D T M +Y+
Sbjct: 565 DDVAFSAVVFACS------HAGLLHEALVRLAWVSGDYGT------------AMGAGLYE 606
Query: 164 RFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCN---KFEKRVVSAGHDADLDA 219
GR E++ +P ++ + L C E+ +AGH+A LD+
Sbjct: 607 CVVDVLARMGRLQEAEELMHAMPYEPDSLAWMALLGACTVHGDLERGARTAGHEALLDS 665
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ Y LV ++ L D + VAW ++I + + CF M
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEM-PERDVVAWTAMITGYASSNYNSCAWECFHEMFKQ 105
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
G P+ SVLKSC + +G VH +++LG++ LY +NALMNMYA
Sbjct: 106 GRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYA 157
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 17/196 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ +I + +QLH +I++ + L + L+ +Y + DS + +
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEI 374
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W S++ +G E++ F +M+ SG+ PD VF +VL +C
Sbjct: 375 EERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACR-------- 426
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA ++ G L N + + Y N D IY+ G+ +E+++++
Sbjct: 427 ---HAGLVEKG----LKYFNVMESEYG--INPDRDIYNCVVDLLGRAGKIGEAYELVERM 477
Query: 186 PERNGNVELSSGLAGC 201
P + + L C
Sbjct: 478 PFKPDESTWGAILGAC 493
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ SI + + KQ+HA + K ++ +++ +L Y + ++ ++
Sbjct: 220 VRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK-D 278
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W ++I ++ E+L F R G P+ F S++ +C + G+ +H
Sbjct: 279 LITWNTLISELERSDS-SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHG 337
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
I R G + ++ NAL++MYA+
Sbjct: 338 RIYRRGFNKNVELANALIDMYAK 360
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 27/151 (17%)
Query: 64 TLKTPAPP-------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
T KTP P +W +R T++ E+++ ++ M SG PD+ FP+VLK+
Sbjct: 43 TSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAV 102
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYT-NNALMNMYAQSQNMDMHIYDRFQGFGFNGGRE 175
+ L D + GE +HA ++ G T N L+NMY + G
Sbjct: 103 SGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKC------------------GGI 144
Query: 176 ASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206
V +V D+I +R+ V +S +A +FEK
Sbjct: 145 GDVCKVFDRITDRD-QVSWNSFIAALCRFEK 174
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K++HA + + L NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 316 GKEIHAYVLRNNDLIENS-FVGSALVDMYCNCRQVESGRRVFDHILGRRIEL-WNAMISG 373
Query: 81 CTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+NGL ++L F+ MI +G+ P+ SV+ +C F ES+H ++LG
Sbjct: 374 YARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKE 433
Query: 140 DLYTNNALMNMYAQSQNMDMH--IYDRFQ 166
D Y NALM+MY++ MD+ I+D +
Sbjct: 434 DRYVQNALMDMYSRMGKMDISETIFDSME 462
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQLH + + + F + L+ +Y V DS L ++ V+W ++I +
Sbjct: 216 GKQLHGYSLRVGDQKT-FTNNALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMISSFS 273
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL--D 140
Q+ E+L F M+ GV D SVL +C+ L G+ +HA ++R DL +
Sbjct: 274 QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR-NNDLIEN 332
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRFQG 167
+ +AL++MY + ++ ++D G
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILG 361
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ +T T+ +++ V + S + +H K R++ + L+ +Y+ + S
Sbjct: 397 LPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISET 456
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-----------------IGSGVY 103
+ D+++ V+W ++I +G +L M G
Sbjct: 457 IFDSMEV-RDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK 515
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
P+ +VL C L G+ +HA IR + D+ +AL++MYA+
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAK 565
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL-FIYNNFNLVHDSLCLLDTLK 66
+ LL + KT KQ+HA + + + F++S++ F + V + L+
Sbjct: 6 LRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTD 65
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ + ++I + + + R++G+G PD FP VLK+CT + + GE
Sbjct: 66 LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYA 152
VH +++G DLY N+L++ Y+
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYS 151
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
+ T +++L + S K +H ++K + + L+ +Y + ++ L
Sbjct: 202 NVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLF 261
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L V+W SII Q +SL F M SGV PD + SVL +C L
Sbjct: 262 DELPD-RDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGAL 320
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYD 163
+G V I R G++ D++ AL++MYA+ M +HI++
Sbjct: 321 DYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFN 363
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I + GL E++ F++M V P+ F SVL +C + G+ VH
Sbjct: 172 VSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGL 228
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN-- 189
+ + + L NAL++MY + + + ++ D++P+R+
Sbjct: 229 VYKRAFGIGLVVGNALVDMYVKCECL------------------CEARKLFDELPDRDIV 270
Query: 190 GNVELSSGLAGCNK 203
+ SGL C +
Sbjct: 271 SWTSIISGLVQCKQ 284
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LH+++ T + F+ + L+ +Y+ F V + + D++ P +W+ ++ T
Sbjct: 453 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYP-SWRVMLVALT 511
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG E+L + R+ G P +F + L SCT L D ++H I DL
Sbjct: 512 QNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLV 571
Query: 143 TNNALMNMYAQSQNMD 158
+N LMN+YA+ ++
Sbjct: 572 LSNVLMNVYAKCGELE 587
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L N+L+ +K Q + +H++I + EP S + + L+ +Y + ++ D
Sbjct: 335 ALSNVLQACSRLKNLEQGRAVHSRIASRDFEP-SLMVQTLLVDMYVKCGDLAEARRTFDG 393
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K ++W S+I + E+L F M GV P+ F +V+ +C+ L
Sbjct: 394 FKA-RDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLP 452
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G ++H+ ++ G D + NAL++MY++ +D
Sbjct: 453 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVD 486
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I Q G E+L + M GV P+ F VL +C L D G+ VH I
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+D NAL+N+YA+ +++
Sbjct: 61 ARVDTVLQNALLNLYAKCGDLE 82
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+W ++I QNG ++ F M+ G V PD + VL +C+ L D G +HA
Sbjct: 198 SWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHAL 257
Query: 132 IIR---LGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
I R LG++ D + +++++A+ ++ ++DR
Sbjct: 258 IHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRM 296
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
KT +L +K + K++H +I +++ L + LL +Y + +S + +
Sbjct: 31 KTFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEA 90
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ W ++I Q+ E+L F RM P F SVL +C D
Sbjct: 91 MERRTV-ATWNTMITAYVQHDFFQEALEAFRRMDAP---PSSITFTSVLGACCSPDDLET 146
Query: 125 GESVHACI--IRLGVDLDLYTNNALMNMYAQSQNMD 158
G+++H I + D N+L+ MY + +++
Sbjct: 147 GKAIHRQIGGSSPQIQADEILQNSLVTMYGKCGSLE 182
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPAPPVA 73
+++ S+A+ +H + K+ + ++S +L +Y + + + D + T V+
Sbjct: 546 TALEDVSRARAIHG-VIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQM-TEKNEVS 603
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I QNG E+L + M V P+ F V+ SC L G+ VHA +
Sbjct: 604 WTTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQRVHARLS 660
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
G+ + AL+NMYA+
Sbjct: 661 DAGLQNNEVIVTALVNMYAK 680
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I Q G +E+L + M + PD +VL++C+ L + G +VH+
Sbjct: 302 VTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNLEQGRAVHSR 358
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
I + L L++MY + ++ F GF
Sbjct: 359 IASRDFEPSLMVQTLLVDMYVKCGDL-AEARRTFDGF 394
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F L + + L+ Y V D++ L + + P AW +II CTQNGL V
Sbjct: 170 KLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVP-AWNAIIAGCTQNGLFV 228
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ F RM+ G P+ +L +C L + G+ +H R V N L+
Sbjct: 229 EAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLI 288
Query: 149 NMYAQSQNM--DMHIYDRFQGFGFN 171
+MY + N+ I+D F G
Sbjct: 289 DMYGKCGNLMEAKWIFDAFSDRGLT 313
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K+ + KQ+HA I K F S L+ + + + + + ++ P +
Sbjct: 41 KSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGS-FEYN 99
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++IR + L E+L +V M+ G+ PD+ +P VLK+C+LL + G +HA + +
Sbjct: 100 TMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKA 159
Query: 136 GVDLDLYTNNALMNMYAQ 153
G++ D++ N L+NMY +
Sbjct: 160 GLEGDVFVQNGLINMYGK 177
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA +FK F+ + L+ +Y + + + + + + +W SII
Sbjct: 151 QIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSV-ASWSSIIGAHASV 209
Query: 85 GLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ E L M G G + + ++ S L +CT L FG +H ++R +L++
Sbjct: 210 EMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAV 269
Query: 144 NNALMNMYAQSQNMD 158
+L++MY +S +++
Sbjct: 270 KTSLIDMYVKSGSLE 284
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+ +LKN +I + K++HA I K S FL+++++ + N+ + L +
Sbjct: 17 FVPILKNCPNI---VELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVA 73
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-----VYPDHNVFPSVLKSCTLLVD 121
P + ++IR N + V ++T + +M+G ++PD FP V+KSC L+
Sbjct: 74 DP-NAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMC 132
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G+ VH + + G + N+L+ MY + ++D
Sbjct: 133 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 169
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I+ + G ++L F RM G+ PD SVL +C L G+ +H
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYA 275
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G ++ NAL+ MYA+ ++D
Sbjct: 276 DKAGFLRNICVCNALIEMYAKCGSID 301
>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H Q+ K + ++ S L+ +Y++ + D +L V W S+I C
Sbjct: 332 GKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQ-DIVTWTSMISGCV 390
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN L ++L F I G+ PD SV+ +C L R GE + I+ G +
Sbjct: 391 QNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTA 450
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++M A+S ++D + RFQ
Sbjct: 451 MGNSFIHMCARSGDVDA-VTRRFQ 473
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +H + K FL S ++ +Y + +++ L ++ P V I C
Sbjct: 225 AEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCR 284
Query: 83 QNGLL-----VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ E+L+ + M G+ P F S+L++C L +F FG+ +H +++
Sbjct: 285 DEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSF 344
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D Y +AL+++Y+ S M+
Sbjct: 345 HDDDYIGSALIDLYSDSGCME 365
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNL---VHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+HA I + S FL + LL Y + +H + + + + A V++ +I +
Sbjct: 21 VHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNA--VSYNLLISSYS 78
Query: 83 QNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ GL +L F R + G+ D + + L +C+ +D R G++VHA + G+ +
Sbjct: 79 RAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGV 138
Query: 142 YTNNALMNMYAQSQNM 157
+ +N+L +MYA M
Sbjct: 139 FLSNSLASMYASCGEM 154
>gi|302799324|ref|XP_002981421.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
gi|300150961|gb|EFJ17609.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
Length = 789
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S + L L+ S++ Q +++H ++ ++ + FL + LL +Y D+ LL
Sbjct: 14 SWRDLARLVDESTSLE---QGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLL 70
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + ++W ++IR Q G SL F RM+ G PD VF S++K+ + +
Sbjct: 71 DRMPRR-NALSWNAVIRANAQAGDFPRSLLFFQRMLQDGSLPDAVVFLSLIKAPRTIQE- 128
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
GE V + G D AL+ MY + +D +DR Q G
Sbjct: 129 --GEIVQEFAEKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERG 175
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I QNG +L + RM + PD F +VL++C D GES+H +
Sbjct: 281 SWNTMISAFAQNGHSSGALDLYGRMT---IRPDGVTFVNVLEACDCPDDLERGESIHRDV 337
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
G D DL AL++MY + +D
Sbjct: 338 RAHGYDSDLIVATALVSMYRRCGRLD 363
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 19/171 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT Q Q+HAQI +S + ++L+ + ++ SL + + K P + ++
Sbjct: 92 KTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHK-PKNLFTFNAL 150
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
IR T N ++ F M+ SG+ PD +P VLKS L G ++H I+R G+
Sbjct: 151 IRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGI 210
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
+LD + +L++MY + + + S +V D+ PER
Sbjct: 211 ELDSFVRVSLVDMYVKVEKL------------------GSAFKVFDESPER 243
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ ++NG ++L+ F +M+ GV P+ S L +C + G +H
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKY 372
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G+ L AL++MYA+ N++
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIE 399
>gi|302762022|ref|XP_002964433.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
gi|300168162|gb|EFJ34766.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
Length = 490
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 22 QAKQLHAQIFKTLE---PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
QA+ LH ++ +LE FL + ++ +Y +HD+ + ++ VAW +++
Sbjct: 170 QARWLHERVSTSLELGLNRDIFLGTAIVNMYGKCGSIHDAEEMFFRMEHR-DVVAWNAML 228
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
NG +E+ F M GV D VF S+L++C+ L D G+ VH + LG +
Sbjct: 229 SAYAHNGYELEAAKLFQEMEHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTELGFE 288
Query: 139 LDLYTNNALMNMYAQ 153
+ +AL+N+Y +
Sbjct: 289 AEDVLGHALVNLYGK 303
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
++A+++HA + ++ RFL + L+ +Y V S D +++P +W +I
Sbjct: 68 AEAERVHAAVLRSGLGGDRFLSNLLVEMYGRCGGVEGSRTAFDAIESP-NVYSWTLLIAA 126
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT---LLVDFRFGESVHACIIRLGV 137
+NG E++ RM GV D + ++ + +L R+ + + LG+
Sbjct: 127 YARNGHHREAMEALRRMDLDGVEADAFTYSTIFNMISRKEMLPQARWLHERVSTSLELGL 186
Query: 138 DLDLYTNNALMNMYAQ 153
+ D++ A++NMY +
Sbjct: 187 NRDIFLGTAIVNMYGK 202
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
++LL+ + K+ ++AK++H K ++ +L +Y + N V + L D +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P+ + W IIR NG ++ + M+ GV P+ +P VLK+C+ L+ G
Sbjct: 72 PSV-ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ G++ D++ AL++ YA+
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAK 156
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + + E+L F M SG+ PD VL +C+ L + G H
Sbjct: 239 VSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 298
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I G D NAL++MY++
Sbjct: 299 LIVRGFATDTLICNALIDMYSK 320
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLE-------PNSRFLISRLLFIYNNFNLVHDSLCLL 62
LL++ + K+ + K +H + K L N +L+ +Y + + + +
Sbjct: 15 LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74
Query: 63 DTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + P V W +IR NG E++ + +M+G G+ P+ FP VLK+C+ L +
Sbjct: 75 DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H I RL ++ ++Y + AL++ YA+ +D
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLD 171
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +++ ++ S LH K+ + + LL +Y +++ ++
Sbjct: 324 SAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFF 383
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + V++ +II QNG E L F+ M SG+ P+ SVL +C L
Sbjct: 384 NEMDLR-DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGL 442
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+G H I G D NAL++MYA+ +D ++DR G
Sbjct: 443 HYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRG 491
>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 729
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
H K+ N + + L+ +Y+ F+ + +L L ++ P + W S+I C Q G
Sbjct: 375 FHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREK-PLITWNSMISGCVQAG 433
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+++ F M G PD S+L C L + R GE++H+ I+R V ++ +
Sbjct: 434 KSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGT 493
Query: 146 ALMNMYAQSQNMD 158
AL++MY++ +D
Sbjct: 494 ALIDMYSKCGRLD 506
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
QA+Q+ Q K + + L+ +Y + + D + + V+W +I
Sbjct: 74 QARQIQTQCLKRGVNQFIHVHTSLIDLYMKLGFTSHARNMFDQM-SYRDVVSWNVLICGY 132
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+QNG L ++ FV M+ P+ S+L SC G S+H I+ G LD
Sbjct: 133 SQNGYLYHAIQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDS 192
Query: 142 YTNNALMNMYAQSQNMD 158
+ NNALM+MYA+ +++
Sbjct: 193 HLNNALMSMYAKCDDLE 209
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++LL + + Q + +H K L + L+ +Y + + S L D +
Sbjct: 159 TIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEM 218
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I QNGL +++ F M+ G + PS + L+ F
Sbjct: 219 DEKSV-VSWNTMIGVYGQNGLFDKAILYFKEMLKEGFH------PSSVTIMNLVSANAFP 271
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
E+VH +++ G D +L+ +YA+
Sbjct: 272 ENVHCYVVKCGFTNDASVVTSLVCLYAK 299
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
ST T +++K + +H+ +F + ++ F+ + L+ Y + +
Sbjct: 107 STYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVF 166
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + + +AW S+I QNGL E++ F +M SG PD F SVL +C+ L
Sbjct: 167 DEMPQRSI-IAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSL 225
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H CI+ G+ +++ +L+NM+++
Sbjct: 226 DLGCWLHECIVGTGIRMNVVLATSLVNMFSR 256
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q HA + T SR L+++LL + + + L ++ P + S+I+ +
Sbjct: 27 QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDP-DSFLFNSLIKASSN 85
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ++++ + RM+ S + P F SV+K+C L R G VH+ + G + +
Sbjct: 86 FGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFV 145
Query: 144 NNALMNMYAQS--QNMDMHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
AL+ YA+S + ++D G+ NG +V EV +K+ E
Sbjct: 146 QAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAV-EVFNKMRESG 204
Query: 190 G---NVELSSGLAGCNKF 204
G + S L+ C++
Sbjct: 205 GEPDSATFVSVLSACSQL 222
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
++LL+ + K+ ++AK++H K ++ +L +Y + N V + L D +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P+ + W IIR NG ++ + M+ GV P+ +P VLK+C+ L+ G
Sbjct: 72 PSV-ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ G++ D++ AL++ YA+
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAK 156
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + S+ ++LH I K L + LL +Y ++ D++ D +
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEM 373
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V++ +I+ C QNG +L+ F M SG+ PD VL +C+ L + G
Sbjct: 374 -NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
H +I G D NAL++MY++
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSK 460
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
++ T++ +L K K LH + N + + LL +Y + + +
Sbjct: 209 NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF 268
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVD 121
D + V+W ++I + + E+L F +MI + P SVL++C L D
Sbjct: 269 DVMGVR-NEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H II+LG LD+ N L++MYA+ +D
Sbjct: 328 LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVID 364
>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
Length = 671
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +LL+ S+ K++H K L++ ++ +Y + S + +TL
Sbjct: 311 AITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTL 370
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W +++ C QN L E+L F M+ G+ SVL++C+ G
Sbjct: 371 ENK-DTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCG 429
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ +++LGVD D NAL+ MYA+
Sbjct: 430 WQIHSRVVKLGVDDDTSVENALVTMYAK 457
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S + +H K S +L + LL Y + D+ + D + V+W +I
Sbjct: 19 SHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRR-NVVSWSVLIVA 77
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVF--PSVLKSCTLLVDFRFGESVHACIIRLGVD 138
++ G+L ++L+ F M+ G N F +++ C D GE VHA ++LGVD
Sbjct: 78 SSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVD 137
Query: 139 LDLYTNNALMNMYAQ 153
D L++MYA+
Sbjct: 138 EDESVAGTLVDMYAK 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ L+ K +Q+HA K + L+ +Y V S +
Sbjct: 107 TVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF--V 164
Query: 66 KTPAPPV-AWKSIIRCCT---QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
TP V +W S+I C +G ++ F +M+ V+P + F +LK +
Sbjct: 165 LTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPEL 224
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH C++++G ++D AL+ MY + MD
Sbjct: 225 LPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261
>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
Length = 671
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +LL+ S+ K++H K L++ ++ +Y + S + +TL
Sbjct: 311 AITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTL 370
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W +++ C QN L E+L F M+ G+ SVL++C+ G
Sbjct: 371 ENK-DTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCG 429
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ +++LGVD D NAL+ MYA+
Sbjct: 430 WQIHSRVVKLGVDDDTSVENALVTMYAK 457
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S + +H K S +L + LL Y + D+ + D + V+W +I
Sbjct: 19 SHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRR-NVVSWSVLIAA 77
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVF--PSVLKSCTLLVDFRFGESVHACIIRLGVD 138
++ G+L ++L+ F M+ G N F +++ C D GE VHA ++LGVD
Sbjct: 78 SSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVD 137
Query: 139 LDLYTNNALMNMYAQ 153
D L++MYA+
Sbjct: 138 EDESVAGTLVDMYAK 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ L+ K +Q+HA K + L+ +Y V S +
Sbjct: 107 TVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF--V 164
Query: 66 KTPAPPV-AWKSIIRCCT---QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
TP V +W S+I C +G ++ F +M+ V+P + F +LK +
Sbjct: 165 LTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPEL 224
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH C++++G ++D AL+ MY + MD
Sbjct: 225 LPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261
>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
sativa Japonica Group]
gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 702
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH K + + LL +Y LV + +L+ ++ P V+W + I
Sbjct: 330 GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP-DLVSWTTAISANF 388
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG +++ +M G P+ F SVL SC + G H ++LG D ++
Sbjct: 389 QNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEIC 448
Query: 143 TNNALMNMYAQSQNMD--------MHIYD 163
T NAL+NMY++ M MH +D
Sbjct: 449 TGNALINMYSKCGQMGSARLAFDVMHTHD 477
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ T+NG +L F M+ SGV P+ + L +C L R GE VH+
Sbjct: 80 VAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSL 139
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+R G D + + L+ MY++ ++ ++DR
Sbjct: 140 AVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+H + K L S + + L+ Y+ + + D+L V+W S+++
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV-VSWCSMMQL 288
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++G L E+L F MI GV P+ VL +C G +H I+ + D
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITD 345
Query: 141 LYTNNALMNMYAQS 154
+ +NAL++MY ++
Sbjct: 346 IRVSNALLSMYGRT 359
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + ++ + + LL +Y ++++ + D + V+W ++I C
Sbjct: 214 RGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQM-ADKDIVSWTTMIHRC 272
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++G E + F ++GSGV P+ F VL +C L + G+ VH + R+G D
Sbjct: 273 FEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFS 332
Query: 142 YTNNALMNMYAQSQNMD 158
+ +AL+++Y++ N +
Sbjct: 333 FAASALVHVYSKCGNTE 349
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L + + K++H + + F S L+ +Y+ + + + +
Sbjct: 299 TFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQM 358
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V+W S+I QNG +L F ++ SG PD F VL +CT
Sbjct: 359 PRP-DLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT-------- 409
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ---GFGFNGGREASVHEVL 182
HA ++ +G++ Y ++ + ++ +H D + GR ++
Sbjct: 410 ---HAGLVDIGLE---YFHS------VKEKHGLVHTADHYACVIDLLARSGRFKEAENII 457
Query: 183 DKIPERNGNVELSSGLAGC 201
D +P + +S L GC
Sbjct: 458 DNMPMKPDKFLWASLLGGC 476
>gi|224106537|ref|XP_002314200.1| predicted protein [Populus trichocarpa]
gi|222850608|gb|EEE88155.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N+L+ + + +Q+H FK+ + ++ S L+ Y L+ DSL + + L
Sbjct: 460 TFSNVLETCSRSENQLMNRQIHGVAFKSGFASHGYVCSSLIKGYIKCGLLDDSLKVFNML 519
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P AW ++I G E++ +I +G PD + S+L SC V +
Sbjct: 520 DRP-DMAAWGTMISAFVHQGWDCEAIRSLNLLIEAGEKPDEFILGSILSSCASTVAYCQT 578
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+SVH+ II+LG + ++ +A+++ YA+
Sbjct: 579 KSVHSLIIKLGFEGHVFVASAVLDAYAK 606
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++I Q G E++ M G++ D F +V++ C+LL DF FG +H II
Sbjct: 224 WNAMIGGYAQCGYGFEAIVTASLMRRKGIFMDKYTFINVIQGCSLLGDFNFGRQIHGLII 283
Query: 134 RLGVDLDLYTNNALMNMYAQSQNM 157
R ++L NALM+MY ++ M
Sbjct: 284 RSELELSAPVMNALMDMYFKNGGM 307
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H I K + F+ + L+ Y ++ + D + V+W ++ Q
Sbjct: 74 QIHGYIIKLGFSSDVFVSNNLIKFYAKGAVLRYGFNVFDGM-LERNVVSWTLMVCGAIQC 132
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR-FGESVHACIIRLGVDLDLYT 143
+ L F+ MI G P+ SV+K+C V+ R FG VH +++G++ + +
Sbjct: 133 EEVELGLEVFLEMIRDGFVPNEFGLGSVMKACGNSVEGRVFGLCVHCFALKIGMERNPFV 192
Query: 144 NNALMNMYAQ 153
+ ++++ YA+
Sbjct: 193 SCSVLSFYAK 202
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ Q G E+L F M G V ++ SVL +C L D + G+ +H
Sbjct: 180 VSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGY 239
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
IIR G+DL + NAL++MYA+ G S +V DK+ +R+
Sbjct: 240 IIRRGLDLGIVVGNALIDMYAKC------------------GSIGSAQKVFDKMLQRD 279
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT ++AKQ+HA + T + ++LL +Y + D+ D + T W +
Sbjct: 25 KTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNM-TKGDVFPWNVM 83
Query: 78 IRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
I ++G E+L + +M S PD+ + SVL +C L G+ ++ II G
Sbjct: 84 IGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKG 143
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++D+ NAL+NM+ + +++ V DK+ ERN
Sbjct: 144 CEMDVIVENALINMFMKCGSIE------------------DARRVFDKMCERN 178
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++I QNG ++L F +M GV P+ SVL +C + + G+ +H
Sbjct: 316 ITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKRIHDL 375
Query: 132 IIRLGVDLDLYTNNALMNM 150
+ R D+ NAL++M
Sbjct: 376 VNRSECKSDICVGNALIDM 394
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
++LL+ + K+ ++AK++H K ++ +L +Y + N V + L D +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P+ + W IIR NG ++ + M+ GV P+ +P VLK+C+ L+ G
Sbjct: 72 PSV-ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ G++ D++ AL++ YA+
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAK 156
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + S+ ++LH I K L + LL +Y ++ D++ D +
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXM 373
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V++ +I+ C QNG +L+ F M SG+ PD VL +C+ L + G
Sbjct: 374 -NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
H +I G D NAL++MY++
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSK 460
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
++ T++ +L K K LH + N + + LL +Y + + +
Sbjct: 209 NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF 268
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVD 121
D + V+W ++I + + E+L F +MI + P SVL++C L D
Sbjct: 269 DVMGV-RNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H II+LG LD+ N L++MYA+ +D
Sbjct: 328 LSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVID 364
>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
Length = 721
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +LL+ S+ K++H K L++ ++ +Y + S + +TL
Sbjct: 311 AITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTL 370
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W +++ C QN L E+L F M+ G+ SVL++C+ G
Sbjct: 371 ENK-DTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCG 429
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ +++LGVD D NAL+ MYA+
Sbjct: 430 WQIHSRVVKLGVDDDTSVENALVTMYAK 457
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S + +H K S +L + LL Y + D+ + D + V+W +I
Sbjct: 19 SHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRR-NVVSWSVLIAA 77
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVF--PSVLKSCTLLVDFRFGESVHACIIRLGVD 138
++ G+L ++L+ F M+ G N F +++ C D GE VHA ++LGVD
Sbjct: 78 SSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVD 137
Query: 139 LDLYTNNALMNMYAQ 153
D L++MYA+
Sbjct: 138 EDESVAGTLVDMYAK 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ L+ K +Q+HA K + L+ +Y V S +
Sbjct: 107 TVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF--V 164
Query: 66 KTPAPPV-AWKSIIRCCT---QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
TP V +W S+I C +G ++ F +M+ V+P + F +LK +
Sbjct: 165 LTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPEL 224
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH C++++G ++D AL+ MY + MD
Sbjct: 225 LPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261
>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
lyrata]
gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
lyrata]
Length = 659
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LHA FKT S F+ + LL +Y + D C + T V W +I+
Sbjct: 106 GESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKI-DKGCRIFTEMQFRNTVTWTAIVSGMV 164
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G E LT F M S D F + LK+C L ++G+ +H +I G D L
Sbjct: 165 EAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRGSDASLC 224
Query: 143 TNNALMNMYAQSQNM--DMHIYD 163
N+L+NMY + M +H+++
Sbjct: 225 VVNSLINMYTECGEMHDGVHLFE 247
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TLI+ + + + K+ A L +IF+ + F + L + N+ ++ + L
Sbjct: 256 SWTTLIDAY-SQMGQEEKAVATFLKIEIFRRTSQWTYFCLGDSLSVSNSMMKMYSTCGKL 314
Query: 63 DTLKT------PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D+ + W +II +Q GL E CF M +G P S+L
Sbjct: 315 DSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVS 374
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G VHA + LG++ + +AL+NMY++ +++
Sbjct: 375 GTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIE 416
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W +II E+L F ++ V PD +V LK+C + +GES+HA
Sbjct: 52 VSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACGQSSNIGYGESLHA 111
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + ++ L+NMY ++ +D
Sbjct: 112 YAFKTSLLTSVFVGTNLLNMYMRTGKID 139
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT S Q+HA +F+ + L +L Y + + S+ L + P+ W +I
Sbjct: 41 KTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSV-FFWTAI 99
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I GL ++L + +M+ GV P+ F S+LK C + G+++H+ ++LG
Sbjct: 100 IHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI----EPGKALHSQAVKLGF 155
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
D DLY L+++YA+ GG S ++ D +PE++
Sbjct: 156 DSDLYVRTGLLDVYAR------------------GGDVVSAQQLFDTMPEKS 189
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q+F T+ S ++ +L Y + + L D ++ V W +I TQNG+
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME-ERDGVCWNVMIDGYTQNGMPN 238
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F RM+ + P+ SVL +C L G VH+ I G+ +++ AL+
Sbjct: 239 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 298
Query: 149 NMYAQSQNMD 158
+MY++ +++
Sbjct: 299 DMYSKCGSLE 308
>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
Length = 656
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH K + + LL +Y LV + +L+ ++ P V+W + I
Sbjct: 284 GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP-DLVSWTTAISANF 342
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG +++ +M G P+ F SVL SC + G H ++LG D ++
Sbjct: 343 QNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEIC 402
Query: 143 TNNALMNMYAQSQNMD--------MHIYD 163
T NAL+NMY++ M MH +D
Sbjct: 403 TGNALINMYSKCGQMGSARLAFDVMHTHD 431
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ CT+NG +L F M+ SGV P+ + L +C L R GE VH+
Sbjct: 80 VAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSL 139
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+R G D + + L+ MY++ ++ ++DR
Sbjct: 140 AVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 20/223 (8%)
Query: 3 STKTL-INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S++TL I+LL+N + + +Q+HAQI KT P S ++R+ + H + +
Sbjct: 26 SSETLKIDLLRN---FNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQI 82
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ ++ P W S ++ + ++++ F R+ V PD SVL++C L+
Sbjct: 83 FECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLL 142
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-------------DMHIYDRFQG 167
D G +H + ++G +LY N ++++YA M D+ ++
Sbjct: 143 DLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
Query: 168 FGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNKFEKRV 208
G +++ ++PERN + +G C K ++ +
Sbjct: 203 QLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I Q+G E++ F+ M+ +G PD S+L +CT L FR G+ +H+
Sbjct: 221 VVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSL 280
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+RLG++ D + L++MYA+S N G + R EV +++P+ N
Sbjct: 281 ALRLGLESDSCVSCGLVDMYAKSHN----------GQSLHNAR-----EVFNRMPKHN 323
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 72 VAWKSIIRCCTQNGLLV-ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+AW +++ Q G + + F +M+ G+ P+H + S+LK+C L D G +H
Sbjct: 325 MAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHT 384
Query: 131 -CIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
C+ DL++ NAL++MYA+S +++ H +D+
Sbjct: 385 HCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQL 421
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
ST T +L+ S+ ++ ++LHA K + R + + L+ +Y+ + D+ +
Sbjct: 455 STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVF 514
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
D + ++W S+I ++G +L F MI +GV P+ + +VL +C+
Sbjct: 515 DEMNDH-NVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACS 568
>gi|302772569|ref|XP_002969702.1| hypothetical protein SELMODRAFT_92471 [Selaginella moellendorffii]
gi|300162213|gb|EFJ28826.1| hypothetical protein SELMODRAFT_92471 [Selaginella moellendorffii]
Length = 689
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W I+ C +NG +E+L RMIG G PD F ++L C D G+ HA I
Sbjct: 25 SWTMILAACARNGRNLEALLLVRRMIGEGARPDVVCFVTILDLCAATADLEQGKVAHAWI 84
Query: 133 IRLGVDLDLYT-NNALMNMYAQSQNMDM--HIYDRFQ 166
+ GV+ NAL+NMY + +N+D+ +DR +
Sbjct: 85 LACGVESSSRVLGNALINMYGKCRNLDLARAQFDRME 121
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 22 QAKQLHAQIFKT-LEPNSRFLISRLLFIYN---NFNLVHDSLCLLDTLKTPAPPVAWKSI 77
Q K HA I +E +SR L + L+ +Y N +L ++ V W S+
Sbjct: 76 QGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQDHGRDVVTWNSL 135
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ T NG L E+ F M G+ P VL+SC+ R G+ H ++ LG+
Sbjct: 136 LAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCS---GDRQGKLFHDRVLDLGL 192
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
D + N+L+ MYA+ ++
Sbjct: 193 QGDEFLMNSLVKMYARCGRLE 213
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +I QN L F +M GV + F S+L +C+ + FG +H
Sbjct: 330 VSWNCLISGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLR 389
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFGF 170
I G++L AL+NMY + + + + +R+Q G
Sbjct: 390 ITAAGLELHTVVATALINMYGKCEELQFAQELLERYQSTGL 430
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ TL +L+ S Q K H ++ FL++ L+ +Y + +S +
Sbjct: 163 SSVTLTCVLE---SCSGDRQGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVF 219
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVD 121
+ ++W +I + G E++ + G PD F SV+ +C+ L D
Sbjct: 220 RAIDQK-DIISWNVMISLEARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGD 278
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ + G D DL NA++NM+ +S +D
Sbjct: 279 LDLCFTIQELVSSAGFDDDLLLGNAVVNMFGKSGCLD 315
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 21/178 (11%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
LL +Y+ V D+L L +L + +AW S++ G E+L +M GV P
Sbjct: 513 LLGMYSKCGCVDDALAALQSLSSRGL-LAWTSMLAAYAHVGRASEALRVLGQMQHDGVVP 571
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
D F +V+ +C+ +H ++RL Y +Y + + R
Sbjct: 572 DDVAFSAVVFACS------HAGLLHEALVRLAWVYGDYGTAMGAGLY----ECVVDVLGR 621
Query: 165 FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC---NKFEKRVVSAGHDADLDA 219
GR E++ +P ++ + L C E+ +AGH+A LD+
Sbjct: 622 M-------GRLQEAEELMHAMPYEPDSLAWMALLGACTVHGDLERGARTAGHEALLDS 672
>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 700
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T LK ++ KQ+H + + ++ + L +Y + D LCL +
Sbjct: 203 TFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFE 262
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ + V+W S+I + G +++ F++M S V P+ F ++ +C L
Sbjct: 263 NM-SERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLV 321
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+GE +H + LG++ L +N++M MY+ +D
Sbjct: 322 WGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLD 356
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LHA KT +S F+ S LL +Y + S C + + V W +II
Sbjct: 121 GESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKS-CRVFSEMPFRNAVTWTAIITGLV 179
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E LT F M S D F LK+C L ++G+ +H +I G D ++
Sbjct: 180 HAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVW 239
Query: 143 TNNALMNMYAQSQNM 157
N+L MY + M
Sbjct: 240 VANSLATMYTECGEM 254
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W +II+ E++ F +R++ V PD +V VLK+C + +GES+H
Sbjct: 66 VSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYGESLH 125
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
A ++ + ++ ++L++MY +
Sbjct: 126 AYAVKTSLLSSVFVGSSLLDMYKR 149
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T + S+ +QLH +F +S + + ++ +Y+ + + L
Sbjct: 305 QTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQG 364
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ ++W +II +Q G E+ F M SG P S+L +
Sbjct: 365 MRCR-DIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEG 423
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G VHA G++ + + L+NMY++ N+
Sbjct: 424 GRQVHALAFCFGLEQNSTVRSTLINMYSKCGNI 456
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-APPVAWKSIIRC 80
QA+ L ++ + E + LIS L+ + V +S+ + + P V+W + I
Sbjct: 105 QARLLFDEMPERNEVSWSALISGLM----KYGRVEESMWYFE--RNPFQNVVSWTAAISG 158
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+NGL E+L F R++ SGV P+ F SV+++C L DF G S+ +++ G +
Sbjct: 159 FVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHY 218
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGG-REASVHEVLDKI 185
L +N+L+ + + +D+ ++DR + + G REA + D++
Sbjct: 219 LSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREA--RRIFDEM 276
Query: 186 PERN 189
PERN
Sbjct: 277 PERN 280
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +IJ +N + L F ++ SG P+ + F SVL +C + G +VH I
Sbjct: 415 SWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKI 474
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+LG+ D++ AL +MYA+ ++ S +V +++PE+N
Sbjct: 475 IKLGIQYDIFVGTALTDMYAKCGDI------------------GSSKQVFERMPEKN 513
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +Q+G E+L F +M+ G P+ + F L + L G ++H
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ ++G+D D++ ++L+++Y + D
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPD 368
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+T T+ +LK SI + +Q+HA+I ++ + ++ S L+ +Y + + +
Sbjct: 230 ANTFTMAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQV 289
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + T V W ++I + G++ E+L+ F M G+ PD V+ +C +
Sbjct: 290 FDEI-TERNLVCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGA 348
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +HA I + + +DL N AL+NMYA+
Sbjct: 349 LDIGRWIHAYIKKRMIHIDLELNTALVNMYAK 380
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 24 KQLHAQIFKTLEP--NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+Q+HA+I L P FL+S++L L + + P P + + +IIR
Sbjct: 145 RQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQIPNPGIFPYNTIIRG 204
Query: 81 CT-QNGLLVESLTCFVRMIGSGVYPDHNVFPS--VLKSCTLLVDFRFGESVHACIIRLGV 137
C+ E + M+ G +P N F VLK+C ++ F G +HA I+R G
Sbjct: 205 CSYAKNPSREPYFLYKSMVTRG-FPRANTFTMAFVLKACASIMAFEEGRQIHARILRSGF 263
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
L+ Y ++L+++Y + + + + +V D+I ERN
Sbjct: 264 SLNPYVQSSLVSLYGKCEEIRL------------------AKQVFDEITERN 297
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T + LL V+ K++H+++ K + + + L+ +Y+ + D+
Sbjct: 325 MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARL 384
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + ++W ++I ++G E+LT + M +GV P+ + S+L +C+
Sbjct: 385 VFDKM-VRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA 443
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
+G +H ++ G+ D + N L+NMY+ ++ ++DR
Sbjct: 444 ALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 99/235 (42%), Gaps = 26/235 (11%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+ +LK + +K +Q+H I + ++ ++ L+ +Y + ++ + L
Sbjct: 27 MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86
Query: 68 PAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
V +W +++ Q G + ++L +M G+ PD S L SC +G
Sbjct: 87 MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ-----------GFGFNGG 173
+H ++ G+ D+ N ++NMYA+ +++ ++D+ + G + G
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCG 206
Query: 174 REASVHEVLDK------IPERNGNVEL------SSGLAGCNKFEKRVVSAGHDAD 216
R + E+ K +P R + + + L R+++AGH++D
Sbjct: 207 RSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESD 261
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++N +P ++K K +H++I + + + L+ +Y D + + L
Sbjct: 232 SVLNAFSSPAALK---WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+AW ++I + G E+ + +M GV P+ + +L +C +G
Sbjct: 289 -VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG 347
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +H+ + + G D+ NAL++MY++
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSR 375
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+++N +P +++ +++H Q+ + + + L+ +Y+ V D+ + D +
Sbjct: 434 SILNACSSPAALE---WGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VA+ ++I + L E+L F R+ G+ PD + ++L +C +
Sbjct: 491 -IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H + + G D NAL++ YA+
Sbjct: 550 REIHTLVRKGGFFSDTSVGNALVSTYAK 577
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
+L +Y + ++ + D ++ + V+W I G + F +M GV P
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSV-VSWTITIGGYADCGRSETAFEIFQKMEQEGVVP 225
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ + SVL + + ++G++VH+ I+ G + D AL+ MYA+
Sbjct: 226 NRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAK 274
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T IN+L + + A+++H + K + + + L+ Y D+ + + +
Sbjct: 532 TYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM 591
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
T ++W +II Q+G ++L F RM GV PD F S+L +C+
Sbjct: 592 -TKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACS 642
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LL++ + + + LHA+ EP+ F+ ++LL +Y + D+ + D++
Sbjct: 83 TYLKLLESCIDSGSIHLGRILHARFGLFTEPDV-FVETKLLSMYAKCGCIADARKVFDSM 141
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I ++ E F M+ GV PD +FP +L+ C D G
Sbjct: 142 R-ERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAG 200
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ +I+LG+ L +N+++ +YA+ +D
Sbjct: 201 KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELD 233
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++T A W ++I NG+ ++L F +M +GV P+ S + +C+ L
Sbjct: 308 METFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKV 367
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH+ +++G D+ N+L++MY++ ++
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLE 404
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K W II QNG E+L F +M S P+ S+L +C L+ +
Sbjct: 484 KVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMV 543
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H C++R +D NAL + YA+S +++
Sbjct: 544 REIHGCVLRRNLDAIHAVKNALTDTYAKSGDIE 576
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Query: 30 IFKTLEPNSRFLIS---RLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86
IF+ + RF +S + N + V + L L P P W +IR + +
Sbjct: 776 IFREMVHKGRFPVSVDRNYMLAVNVTSDVDYAYKFLSKLSDP-PNYGWNFVIRGFSNSRN 834
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+S++ +++M+ G+ PDH +P ++KS + L + + G S+H +++ G++ DL+ N
Sbjct: 835 PEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNT 894
Query: 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
L++MY ++ +AS ++ D++P +N
Sbjct: 895 LIHMYGSFRD------------------QASARKLFDEMPHKN 919
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 18 KTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
KT K +HA++ ++ +S F+I++LL +Y+ F + + D + P + W S
Sbjct: 13 KTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYL-WTS 71
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I +N E+ + F++M + + SVLK+ L F+ G++V+ +++ G
Sbjct: 72 LIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYG 131
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRF------------QGFGFNGGREASVHEVL 182
DL N++++++ + + +D +D G+G N R +
Sbjct: 132 FAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYG-NNDRVDIARKFF 190
Query: 183 DKIPERN 189
D++PERN
Sbjct: 191 DRMPERN 197
>gi|413953269|gb|AFW85918.1| hypothetical protein ZEAMMB73_461812, partial [Zea mays]
Length = 398
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q+ LE +S L++ Y + +H +LCL D +++P+ + W S+I C
Sbjct: 13 QVLDRLEHVDEISLSALVYGYASCGQLHKALCLFDKMESPSIAL-WTSLISGCNPAYHGD 71
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
+ FVRM+ S + P+ ++ VL C L + G+ AC ++ G DL +AL+
Sbjct: 72 GAFVLFVRMLRSEMLPNSTIYAIVLNMCGFLGMLKPGQQTQACALKSGAVNDLIAASALI 131
Query: 149 NMYAQ 153
+ Y++
Sbjct: 132 DFYSK 136
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
Q F L + +++ ++ +Y+N + ++ + + + + ++W S+I +QNG +
Sbjct: 145 QAFSELRHHDTIVLNSMITVYSNCGQIDEARRVFRLIPSKSV-ISWNSMIVGFSQNGHAL 203
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L F M G+ D+ SVL + + GE + I LG+ D ++L+
Sbjct: 204 DALELFCEMHRLGLQLDNVAISSVLSASGSICSVSSGEQIFGLAIALGLQSDHIVASSLI 263
Query: 149 NMYAQSQNM 157
++Y + N+
Sbjct: 264 DLYCKCGNL 272
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-APPVAWKSIIRC 80
QA+ L ++ + E + LIS L+ + V +S+ + + P V+W + I
Sbjct: 105 QARLLFDEMPERNEVSWSALISGLM----KYGRVEESMWYFE--RNPFQNVVSWTAAISG 158
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+NGL E+L F R++ SGV P+ F SV+++C L DF G S+ +++ G +
Sbjct: 159 FVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHY 218
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGG-REASVHEVLDKI 185
L +N+L+ + + +D+ ++DR + + G REA + D++
Sbjct: 219 LSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREA--RRIFDEM 276
Query: 186 PERN 189
PERN
Sbjct: 277 PERN 280
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +N + L F ++ SG P+ + F SVL +C + G +VH
Sbjct: 414 VSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
II+LG+ D++ AL +MYA+ ++ S +V +++PE+N
Sbjct: 474 IIKLGIQYDIFVGTALTDMYAKCGDI------------------GSSKQVFERMPEKN 513
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +Q+G E+L F +M+ G P+ + F L + L G ++H
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD------------RFQGFGFNGGREAS 177
+ ++G+D D++ ++L+++Y + D ++D G+ N GR
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSIN-GRLEE 400
Query: 178 VHEVLDKIPERNGNVELSSGLAG 200
E+ + IPE+N +V + +AG
Sbjct: 401 TEELFELIPEKN-DVSWGTIIAG 422
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T T L +LL+ + K K +HA + ++ + FL +RL+ Y N + S L
Sbjct: 3 TKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRL 62
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK--SCTL 118
D + P + W +I+ + L ++ F M + + + ++ + +C
Sbjct: 63 FDQM--PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGA 120
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
LVD G H I++G+D ++Y NAL+ MYA+ + I D Q FG
Sbjct: 121 LVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC----IGDAIQAFG 167
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + + +Q+HA K + +L S L+ +Y+ V + + D +
Sbjct: 392 TLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI 451
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S++ + N L E+ T F +M G++P + +VL C L G
Sbjct: 452 -AELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG 510
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH+ I R G D + +AL++MY++ ++D
Sbjct: 511 RQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 543
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ + SQ +Q+H+QI + N F+ S L+ +Y+ V + + D + V W
Sbjct: 504 LSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM-LGKNTVTWNE 562
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+I QNG E++ + MIGSG PD F +VL +C+
Sbjct: 563 MIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACS 603
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + +P+ +W +I+ +QN E++ F M V+PD +L S ++
Sbjct: 346 MFDGMSSPSLS-SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMM 404
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
G VHA + D+Y + L+ MY++ ++M I+DR
Sbjct: 405 LLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI 451
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++ H K N+ ++ + LL +Y + D++ + P V++ +++
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEP-NEVSFTAMMGGLA 185
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--------------LLVDFRFGESV 128
+ + E+ F M+ + ++ D SVL C+ +L G+ V
Sbjct: 186 DSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQV 245
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H I+ G + DL+ NN+L++MYA++ NMD
Sbjct: 246 HCLTIKHGFESDLHLNNSLLDMYAKNGNMD 275
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL-----KSCTLLVDFRFGE 126
++W S+I C Q+ L ES+ F+ ++ G+ PDH S+ K+C LV G+
Sbjct: 353 ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGK 412
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+HA I+ G D DL+ N+ +++MY + +M
Sbjct: 413 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDM 443
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA K + + S +L +Y + ++ + + + P VAW S+I C
Sbjct: 410 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP-DDVAWTSMISGC 468
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG ++L + RM S V PD F +++K+ + + G +HA +I+L D
Sbjct: 469 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 528
Query: 142 YTNNALMNMYAQSQNMD 158
+ +L++MYA+ N++
Sbjct: 529 FVGTSLVDMYAKCGNIE 545
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T+ TL +LK ++ A+ +H K F+ L+ IY+ + D+ L
Sbjct: 181 TTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLL 240
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV- 120
D ++ V W +++ Q GL E+ F SG+ PD +L C
Sbjct: 241 FDWMR-ERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGT 299
Query: 121 -DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D G+ VH ++ G+D D+ N+L+NMY++
Sbjct: 300 DDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 333
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T L+K + Q +QLHA + K + F+ + L+ +Y + D+
Sbjct: 490 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYR 549
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L + + W +++ Q+G E++ F M G+ PD F +L +C+
Sbjct: 550 LFKKMNVRNIAL-WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 8/154 (5%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ +S K HA+I + FL + LL +Y+ + + + DT TP
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDT--TPE 140
Query: 70 PP-VAWKSIIRCC-----TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
V W +I+ + +G E L F + S VLK C
Sbjct: 141 RDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLW 200
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
E VH I++G++ D++ + AL+N+Y++ M
Sbjct: 201 AAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRM 234
>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1221
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH K + + LL +Y LV + +L+ ++ P V+W + I
Sbjct: 257 GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP-DLVSWTTAISANF 315
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG +++ +M G P+ F SVL SC + G H ++LG D ++
Sbjct: 316 QNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEIC 375
Query: 143 TNNALMNMYAQSQNMD--------MHIYD 163
T NAL+NMY++ M MH +D
Sbjct: 376 TGNALINMYSKCGQMGSARLAFDVMHTHD 404
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ T+NG +L F M+ SGV P+ + L +C L R GE VH+
Sbjct: 7 VAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSL 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+R G D + + L+ MY++ ++ ++DR
Sbjct: 67 AVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 102
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+H + K L S + + L+ Y+ + + D+L V+W S+++
Sbjct: 157 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV-VSWCSMMQL 215
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++G L E+L F MI GV P+ VL +C G +H I+ + D
Sbjct: 216 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITD 272
Query: 141 LYTNNALMNMYAQS 154
+ +NAL++MY ++
Sbjct: 273 IRVSNALLSMYGRT 286
>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1218
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S KT I+LL++ + + + +++HA F ++ + FL ++L+ +Y + D+ L
Sbjct: 73 SPKTFISLLQSCIDCNSVTLGRKVHAH-FHLVQEKNPFLETKLVSMYAKCGSLSDARKLF 131
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++ W ++I ++ E + F M+ PD + P +L++C D
Sbjct: 132 GEMREKNL-YTWSAMIGAFSREHRWKEVVELFYMMMEENCLPDAFLLPKILQACGNSRDI 190
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ GE VH+ I+ GVD + NN+++ +YA+
Sbjct: 191 KSGEMVHSLAIKCGVDGYPFVNNSILAVYAK 221
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 52 FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPS 111
F++ + + ++ L T V W S+I QN ++L F MI + V P+ S
Sbjct: 291 FDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILARVEPNGVTISS 350
Query: 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFN 171
+ +C L G +HA ++LG D+ N+L++MY++
Sbjct: 351 AVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKC----------------- 393
Query: 172 GGREASVHEVLDKIPERN 189
G+ + +V D +PE++
Sbjct: 394 -GKLENAWKVFDMMPEKD 410
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+W S+I Q G ++L+ F +M + + SVL +C L+ + + +H C
Sbjct: 483 ASWNSLISGYLQIGQKDKALSIFRQMQSFSININSVTILSVLPACANLIALKMVKEIHGC 542
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
+IR +D L N+L++ YA+S N+ I+DR
Sbjct: 543 VIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDR 577
>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
++L++LL+ + ++++ A+Q HAQI + FL +RL+ Y + S + ++
Sbjct: 29 QSLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFES 88
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ + + W S+I +N ++L F M +G+ PD +V K L D
Sbjct: 89 VEAKSVYL-WNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVS 147
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H IR+G D+ N+LM+MY + G +V D+
Sbjct: 148 GKLIHGKGIRIGFVSDVVVGNSLMSMYCRC------------------GEFGDAVKVFDE 189
Query: 185 IPERNGNVELSSGLAGCNKFE 205
P RN + ++GC E
Sbjct: 190 TPHRNVG-SFNVVISGCAALE 209
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
W ++I QNG ++L M + G+ P+ S L +C LL G+ +H
Sbjct: 309 WTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFS 368
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
I++ ++ D+ NAL++MY++ ++D
Sbjct: 369 IKMELNDDVSLCNALIDMYSKCGSLD 394
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L++ V + +QLHA++ + L +RL+ +Y + V + + D +
Sbjct: 73 TILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQ 132
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGES 127
W +IR ++G ++ + M+ G + PD+ +P VLK+C L+D G
Sbjct: 133 GNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGRE 192
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH ++R D++ L++MYA+ MD
Sbjct: 193 VHDRVMRTNWATDVFVCTGLIDMYAKCGCMD 223
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD--TLKT 67
+LK ++ S +++H ++ +T F+ + L+ +Y + ++ + + T++
Sbjct: 177 VLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRD 236
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
A W S+I C QNG E+LT M G+ P S + + + G
Sbjct: 237 AA---VWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRE 293
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQS 154
+H R G +L++MYA+S
Sbjct: 294 LHGYGWRRGFGSQDKLKTSLLDMYAKS 320
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
N L +R++ +Y DS + D L++ W ++I ++N L E L F+
Sbjct: 473 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNL-FQWNAVISSYSRNELYDEVLETFIE 531
Query: 97 MIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
MI + + PDH +P V+K+C + D G +VH +++ G+ D++ NAL++ Y
Sbjct: 532 MISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYG 588
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + KT F+ + L+ Y V D+L L D + V+W S+IR + NG
Sbjct: 564 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPE-RNLVSWNSMIRVFSDNG 622
Query: 86 LLVESLTCFVRMI---GSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
ES M+ G G + PD +VL C + G+ VH ++L +D +L
Sbjct: 623 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 682
Query: 142 YTNNALMNMYAQ 153
NNALM+MY++
Sbjct: 683 VLNNALMDMYSK 694
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K+ K++H I + F+ +L +Y + + L D +
Sbjct: 853 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 912
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V+W ++I QNG +L F +M+ G+ V +C+LL R G
Sbjct: 913 EDKSL-VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 971
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
HA ++ ++ D + +L++MYA++ ++
Sbjct: 972 REAHAYALKHLLEDDAFIACSLIDMYAKNGSI 1003
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I Q+ SL ++M SG+ PD S+L +C+ L R G+ VH I
Sbjct: 818 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 877
Query: 133 IRLGVDLDLYTNNALMNMY 151
IR ++ DL+ +++++Y
Sbjct: 878 IRNWLERDLFVYLSVLSLY 896
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 67 TPAPPVA-------WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+P P++ W +R T++ L E+++ +V MI SGV PD FP VLK+ T L
Sbjct: 31 SPPKPISQSRSQASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGL 90
Query: 120 VDFRFGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
D G+ +HA +++ G + + N+L+N Y + +D V
Sbjct: 91 QDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCSELD------------------DV 132
Query: 179 HEVLDKIPERN 189
++V D+I ER+
Sbjct: 133 YKVFDRINERD 143
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H F+ S F + L+ +Y N + D+ L + ++W ++I +
Sbjct: 201 GKQIHGYCFRNGHW-STFTNNALMTMYANLGRLDDAKFLFKLFED-RNLISWNTMISSFS 258
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL--D 140
QN VE+L M+ GV PD SVL +C+ L G+ +HA +R G DL +
Sbjct: 259 QNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSG-DLIEN 317
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
+ +AL++MY N G+ S V D I ER
Sbjct: 318 SFVGSALVDMYC------------------NCGQVGSGRRVFDGILER 347
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
TL ++L ++ K++HA ++ L NS F+ S L+ +Y N V + D
Sbjct: 284 TLASVLPACSYLEMLGTGKEIHAYALRSGDLIENS-FVGSALVDMYCNCGQVGSGRRVFD 342
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDF 122
+ + W ++I QN ++L F+ M+ +G+ P+ S++ + F
Sbjct: 343 GILERKTGL-WNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESF 401
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ 166
ES+H +I+ ++ D Y NALM+MY++ + M++ I+D +
Sbjct: 402 FSKESIHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSME 447
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LK ++ + KQ+HA + K E +S + + L+ Y + + D + D +
Sbjct: 83 VLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRI-NE 141
Query: 69 APPVAWKSIIR--CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD---FR 123
V+W S+I C Q L +L F M+ + P S + +C+ L R
Sbjct: 142 RDLVSWNSLISAFCRAQEWEL--ALEAFRFMLAEDLEPSSFTLVSPVIACSNLRKHEGLR 199
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H R G +TNNALM MYA +D
Sbjct: 200 LGKQIHGYCFRNG-HWSTFTNNALMTMYANLGRLD 233
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +NLL+ + ++LH +I + N F+ ++L+ +Y + ++ + D +
Sbjct: 86 TFMNLLQACIDKDCILVGRELHTRIGLVRKVNP-FVETKLVSMYAKCGHLDEARKVFDEM 144
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I C+++ E + F M+ GV PD + P VLK+C D G
Sbjct: 145 RE-RNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDFLLPKVLKACGKFRDIETG 203
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+H+ +IR G+ L+ NN+++ +YA+ M
Sbjct: 204 RLIHSLVIRGGMCSSLHVNNSILAVYAKCGEM 235
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 70 PPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P VA W S+I QN ++L F +M S + P+ ++L +CT LV + + +
Sbjct: 490 PNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNLVAAKKVKEI 549
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
H C R + +L +N ++ YA+S N+ M+ F G
Sbjct: 550 HCCATRRNLVSELSVSNTFIDSYAKSGNI-MYSRKVFDGL 588
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W S+I TQ G + E+ M+ GV P+ S +C + G +H+ +
Sbjct: 323 WTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEIHSIAV 382
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ + D+ N+L++MYA+ +++
Sbjct: 383 KTSMVDDILIGNSLIDMYAKGGDLE 407
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 30/200 (15%)
Query: 25 QLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H I L+P+++ L+ Y+ F S ++D++ P V W S+IR T+
Sbjct: 23 QIHGSLIVAGLKPHNQ-----LINAYSLFQRPDLSRKIVDSVPYPGV-VLWNSMIRGYTR 76
Query: 84 NGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
GL E+L F M G+ PD F LK+C +DF G +H I +G + D+Y
Sbjct: 77 AGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVY 136
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNV--ELSSGLA- 199
AL+ MY ++ ++ S +V DK+P ++ + SGLA
Sbjct: 137 IGTALVEMYCKAGDL------------------VSARQVFDKMPVKDIVTWNTMVSGLAQ 178
Query: 200 -GCNKFEKRVVSAGHDADLD 218
GC+ R+ H + +D
Sbjct: 179 NGCSSEALRLFRDMHSSFVD 198
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q G E+L+ F M+ + P+ SVL+ C + R G+S+H
Sbjct: 367 VSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCY 426
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ V+ +L T A+++MYA+
Sbjct: 427 AIKADVESELETATAVISMYAK 448
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + K +H K + + ++ +Y L +L + L
Sbjct: 403 TLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERL 462
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+A+ ++ + TQ G ++ + M GV PD +L++C L D+ G
Sbjct: 463 PIK-DAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARG 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V+ II+ G D + + +AL++M+ +
Sbjct: 522 SCVYGQIIKHGFDSECHVAHALIDMFTK 549
>gi|242091425|ref|XP_002441545.1| hypothetical protein SORBIDRAFT_09g029090 [Sorghum bicolor]
gi|241946830|gb|EES19975.1| hypothetical protein SORBIDRAFT_09g029090 [Sorghum bicolor]
Length = 501
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ + +L + S+K Q+HAQ K + ++ S L+ +Y + H++ + L
Sbjct: 211 SYVAVLGHCASMKDFVLGIQVHAQALKKRLELNVYVGSALVDMYGKCDHAHEANHAFEVL 270
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +++ QN L ++L F+ M GV P+ + VL SC L R G
Sbjct: 271 PEK-NVVSWTAVMTAYNQNELYEDALQLFLDMEMEGVQPNEFTYAVVLNSCAGLAALRTG 329
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ AC ++ G L +N L+NMY++S +++
Sbjct: 330 NTLGACTMKSGHWDHLLVSNGLLNMYSKSGSIE 362
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ +Q H K R++ + +L++Y + D+ + + + + A+ S
Sbjct: 121 VRSYDMGRQCHGYAVKAGLAEQRYVFNAVLYMYCQCAHMEDAAKVFENV-SGFDAFAFNS 179
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I GLL S +M D+ + +VL C + DF G VHA ++
Sbjct: 180 MINGFLDRGLLDGSFGIVRKMTEEVEKWDYVSYVAVLGHCASMKDFVLGIQVHAQALKKR 239
Query: 137 VDLDLYTNNALMNMYAQ 153
++L++Y +AL++MY +
Sbjct: 240 LELNVYVGSALVDMYGK 256
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLIS-RLLFIYNNFNLVHD---SLCLLDTLKTPAP 70
+ I + +QA QLHA+I K+ +S LF ++ + D + +L TL TP
Sbjct: 1 MEITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNS 60
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIG------SGVYPDHNVFPSVLKSCTLLVDFRF 124
+ ++IR + + + T F+ M + PDH +P VLK+C+ RF
Sbjct: 61 -FYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARF 119
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H + + GV D Y NNAL+++Y+ S G ++V DK
Sbjct: 120 GKQIHGLVFKSGVGSDRYINNALIHLYSVS------------------GEPNLAYKVFDK 161
Query: 185 IPERN 189
+P+R+
Sbjct: 162 MPDRD 166
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H +FK+ + R++ + L+ +Y+ + + + D + V+W SII
Sbjct: 120 GKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPD-RDVVSWTSIIDGFV 178
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
N +E++ F MI +G+ P+ SVL++C GE +H+ + +
Sbjct: 179 DNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNAN 238
Query: 143 TNNALMNMYAQSQNMD--MHIYD 163
+ AL++MYA+ +D + ++D
Sbjct: 239 VSTALIDMYAKCGCIDGALEVFD 261
>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 774
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ KQ+H + +T + ++S L+ +Y+ + S C+ D
Sbjct: 418 TLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDC 477
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRF 124
W S+I N L ++L F RM + V P+ F +VL SC+ L
Sbjct: 478 INELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLH 537
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H +++ G D + AL +MY + +D
Sbjct: 538 GRQFHGLVVKSGYVSDSFVETALTDMYCKCGEID 571
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G ++L + RM+ G P SVL +C+ ++D FG H
Sbjct: 104 VSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGV 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ G+D +++ NAL++MYA+
Sbjct: 164 AVKTGLDKNIFVGNALLSMYAK 185
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD-SLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+ H KT + F+ + LL +Y + D + + ++L P V++ ++I +
Sbjct: 159 RCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP-NEVSYTAVIGGLAR 217
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVL------KSCTLLVDF---RFGESVHACIIR 134
++E++ F M GV D ++L + C L + G+ +H +R
Sbjct: 218 ENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALR 277
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
LG DL+ NN+L+ +YA++++M+
Sbjct: 278 LGFGGDLHLNNSLLEIYAKNKDMN 301
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 68 PAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P P V AW +++ + E+++ F +M + PD +L SC L G+
Sbjct: 377 PQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGK 436
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H +IR + + + + L+ +Y++ + M++
Sbjct: 437 QIHGVVIRTEISKNSHIVSGLIAVYSECEKMEI 469
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W + I +NGL E+L F R++ SGV P+ F SV+++C L DF G S+
Sbjct: 150 VSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGL 209
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNGG-REA 176
+++ G + L +N+L+ + + +D+ ++DR + + G REA
Sbjct: 210 VVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREA 269
Query: 177 SVHEVLDKIPERN 189
+ D++PERN
Sbjct: 270 --RRIFDEMPERN 280
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +N + L F ++ SG P+ + F SVL +C + G +VH
Sbjct: 414 VSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
II+LG+ D++ AL +MYA+ ++ S +V +++PE+N
Sbjct: 474 IIKLGIQYDIFVGTALTDMYAKCGDI------------------GSSKQVFERMPEKN 513
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +Q+G E+L F +M+ G P+ + F L + L G ++H
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYD------------RFQGFGFNGGREAS 177
+ ++G+D D++ ++L+++Y + D ++D G+ N GR
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSIN-GRLEE 400
Query: 178 VHEVLDKIPERNGNVELSSGLAG 200
E+ + IPE+N +V + +AG
Sbjct: 401 TEELFELIPEKN-DVSWGTIIAG 422
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 23 AKQLHAQI-FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q HAQI L+PN+ FL ++++ +Y + + ++ + D + P+ + + SIIR
Sbjct: 96 GQQAHAQIVLHGLQPNA-FLAAKMVAMYASSGDLDSAVVVFDRIDNPSS-LLYNSIIRAY 153
Query: 82 TQNGLLVES---LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
T++G L + RM G+ D+ P VLKSC L G VH +R+G++
Sbjct: 154 TRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLE 213
Query: 139 LDLYTNNALMNMYAQ 153
D Y +L++MY +
Sbjct: 214 GDFYVGASLIDMYVK 228
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I TQNG ++L F M+ GS + P+ SVL +C G +H
Sbjct: 279 VSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIH 338
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
+G+ L+ AL MYA+
Sbjct: 339 DFANGIGLHLNSSVQTALAGMYAK 362
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
S+LL +Y + + D+ L D + K W S+I Q G E++ + +M+ G
Sbjct: 129 SKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEG 188
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
V D FP VLK C + + GE VH IR G D + NAL++MY++ ++
Sbjct: 189 VEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI---- 244
Query: 162 YDRFQGFGFNGGREASVHEVLDKIPERN 189
+V DK+P R+
Sbjct: 245 --------------VKARKVFDKMPHRD 258
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + +++H + F+++ L+ +Y+ + + + D
Sbjct: 195 TFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFD-- 252
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P PV+W S++ +GL V+++ F +M+ G PD +VL + L
Sbjct: 253 KMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSL---GL 309
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G +H +I G + +L N+L+ MY+ N GR V +
Sbjct: 310 GVQIHGWVISQGHEWNLSIANSLIMMYS------------------NHGRLEKARWVFNL 351
Query: 185 IPERN 189
+PER+
Sbjct: 352 MPERD 356
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC-CTQ 83
Q+H + + + + L+ +Y+N + + + + L V+W SII C +
Sbjct: 312 QIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFN-LMPERDVVSWNSIISAHCKR 370
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
E+L F +M G+GV PD F S+L +C L + GE + A +
Sbjct: 371 R----EALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALM 415
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA K + + S +L +Y + ++ + + + P VAW S+I C
Sbjct: 1125 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP-DDVAWTSMISGC 1183
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG ++L + RM S V PD F +++K+ + + G +HA +I+L D
Sbjct: 1184 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 1243
Query: 142 YTNNALMNMYAQSQNMD 158
+ +L++MYA+ N++
Sbjct: 1244 FVGTSLVDMYAKCGNIE 1260
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-FRFGESVHA 130
++W S+I C Q+ L ES+ F+ ++ G+ PDH SVL++C+ L+D +H
Sbjct: 971 ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHV 1030
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF---NGGR 174
++ G D + L+++Y++S M+ + FQ FG+ N G+
Sbjct: 1031 HALKTGNIADSFVATTLIDVYSKSGKMEEAEF-LFQNKDDLDLACWNAMMFGYIIGNDGK 1089
Query: 175 EA-SVHEVLDKIPERNGNVELSSGLAGC---------NKFEKRVVSAGHDADL 217
+A + ++ K E++ + L++ C + + AG D+DL
Sbjct: 1090 KALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 1142
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++Q+H KT F+ + L+ +Y+ + ++ L K W +++
Sbjct: 1025 SRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQN-KDDLDLACWNAMMFGYI 1083
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++L F + SG D + K+C LV G+ +HA I+ G D DL+
Sbjct: 1084 IGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLH 1143
Query: 143 TNNALMNMYAQSQNM 157
N+ +++MY + +M
Sbjct: 1144 VNSGILDMYIKCGDM 1158
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LK V + + +A QL ++ ++ L P+ F + +L + N + L D ++
Sbjct: 799 MLKGYVQLGLEKEAFQLFSEFHRSGLRPD-EFSVQLILNGVSEVNW-DEGKWLADQVQAY 856
Query: 69 APPVA----------WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
A ++ W + C G ++ CFV M G + D VL +
Sbjct: 857 AAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAG 916
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D G+ VH ++ G+D D+ N+L+NMY++
Sbjct: 917 TDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 951
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T L+K + Q +QLHA + K + F+ + L+ +Y + D+
Sbjct: 1205 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYR 1264
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L + + W +++ Q+G E++ F M G+ PD F +L +C+
Sbjct: 1265 LFKKMNVRNIAL-WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 8/154 (5%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ +S K HA+I + FL + LL +Y+ + + + DT TP
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDT--TPE 684
Query: 70 PP-VAWKSIIRCC-----TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
V W +I+ + +G E L F + S VLK C
Sbjct: 685 RDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLW 744
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
E VH I++G++ D++ + AL+N+Y++ M
Sbjct: 745 AAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRM 778
>gi|297843734|ref|XP_002889748.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
lyrata]
gi|297335590|gb|EFH66007.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
lyrata]
Length = 595
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W+ +I+ +NG +E+L FV M GV P SVL C L G+ VHA ++
Sbjct: 249 WQMVIKFHERNGFELEALDLFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLV 308
Query: 134 RLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
R D+DLY + LM MY + + I+DRF
Sbjct: 309 RCQFDVDLYVASVLMTMYIKCGELLKSKLIFDRF 342
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD--TLKTPAPPVAWKSIIRC 80
Q+H+ + K+ ++ + L+ +Y + + + D LKTP V W +II
Sbjct: 161 GSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTP---VTWTAIITG 217
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T++G SL F M+ S V PD V S+L +C++L + G+ +HA ++R +D
Sbjct: 218 YTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMD 277
Query: 141 LYTNNALMNMYAQ 153
+ T N L++ Y +
Sbjct: 278 VSTYNVLIDFYTK 290
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + ++ + L+ Y V L D L ++W ++I
Sbjct: 262 GKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVK-NIISWTTMIAGYM 320
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN E++ M G PD SVL SC + + G +H+ +I++ ++ D +
Sbjct: 321 QNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNF 380
Query: 143 TNNALMNMYAQSQNMD 158
NAL++MY++ +D
Sbjct: 381 VTNALIDMYSKCNALD 396
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+ L NLL PVS K+ +++H Q+ FL + LL Y V D+ L D
Sbjct: 41 RALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFD- 99
Query: 65 LKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDF 122
K P V+W S++ TQ G ++L F+ + V + + S++++C
Sbjct: 100 -KMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGG 158
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH+ +I+ G D+Y +L+ +YA+ +D
Sbjct: 159 EPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEID 194
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+KQ+H I K +F S L+ +Y+ + + D+ + + T V W S+
Sbjct: 464 SKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEG-TTNKDIVVWNSLFSGYN 522
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
E+ + + S P+ F ++ + ++L G+ H ++++G++ D +
Sbjct: 523 LQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPF 582
Query: 143 TNNALMNMYAQ 153
NAL++MYA+
Sbjct: 583 ITNALVDMYAK 593
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 20/196 (10%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q H Q+ K + F+ + L+ +Y V ++ + + W S+I
Sbjct: 564 HGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSS-SVWKDTACWNSMISMY 622
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q+G + E+L F M+ + + P++ F SVL +C+ + G + + R G++ +
Sbjct: 623 AQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGI 682
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+++ + ++ GR E ++K+ R + S L+ C
Sbjct: 683 EHYASVVTLLGRA------------------GRLTEAREFIEKMTIRPAALVWRSLLSAC 724
Query: 202 NKFEKRVVSAGHDADL 217
F V A H A++
Sbjct: 725 RVF-GNVELAKHAAEM 739
>gi|356532255|ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 948
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V + K A L +F +E S F + +++ Y+ +++L + T V+W
Sbjct: 184 VDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVF-TRMPKHDHVSW 242
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++I +Q G + L+ +V M G P+ + SVL +C + D ++G +HA I+R
Sbjct: 243 NTLISVFSQYGHGIRCLSTYVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILR 302
Query: 135 LGVDLDLYTNNALMNMYAQ 153
+ LD + + L++MYA+
Sbjct: 303 MEHSLDAFLGSGLIDMYAK 321
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 36/165 (21%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-------------------- 62
A++LHAQ+ + S FL++ LL +Y+N +V D+ C+
Sbjct: 23 ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFCVFREANHANIFTWNTMLHAFFD 82
Query: 63 -------DTLKTPAP-----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+ L P V+W ++I QNGL S+ F+ M+ + N P
Sbjct: 83 SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142
Query: 111 ----SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151
+K+C L RF +HA +I+L + N+L++MY
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMY 187
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W S++ Q+G E + +V M V PD F + +++C L + G V +
Sbjct: 473 ITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSH 532
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G+ D+ N+++ MY++
Sbjct: 533 VTKFGLSSDVSVANSIVTMYSR 554
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 16/198 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L SI LHA+I + FL S L+ +Y + + + ++L
Sbjct: 276 TYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSL 335
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I Q GL ++L F +M + V D ++L C+ G
Sbjct: 336 G-EQNQVSWTCLISGVAQFGLGDDALALFNQMRQASVVLDEFTLVTILGVCSGQNYAATG 394
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQ------GFGFN 171
E +H I+ G+D + NA++ MYA+ + + M + D F N
Sbjct: 395 ELLHGYAIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQN 454
Query: 172 GGREASVHEVLDKIPERN 189
G + + + D PERN
Sbjct: 455 GDIDRA-RQCFDMTPERN 471
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDFRFGES 127
P V+W S I +NG L E+ F RM +GV P+H F ++L +CT L RFG S
Sbjct: 53 PIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGS 112
Query: 128 VHACIIRLGVDLD-LYTNNALMNMYAQSQNMDM 159
+HA + +LG+D + + AL++MY++ +D+
Sbjct: 113 IHAYVRKLGLDTENVMVGTALVDMYSKCGQLDL 145
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
V +++ L D + + ++W S+I + G ++L F M +GV PD+ SVL
Sbjct: 174 VGEAIVLFDQM-SERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+C L G ++ +++ ++ +N+L++MY++
Sbjct: 233 ACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSR 271
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q KQ+HA K + + S +L +Y + ++ + + + P VAW S+I C
Sbjct: 48 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP-DDVAWTSMISGC 106
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG ++L + RM S V PD F +++K+ + + G +HA +I+L D
Sbjct: 107 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 166
Query: 142 YTNNALMNMYAQSQNMD 158
+ +L++MYA+ N++
Sbjct: 167 FVGTSLVDMYAKCGNIE 183
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M T L+K + Q +QLHA + K + F+ + L+ +Y + D+
Sbjct: 128 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYR 187
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
L + + W +++ Q+G E++ F M G+ PD F +L +C+
Sbjct: 188 LFKKMNVRNIAL-WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 243
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L F + SG D + K+C LV G+ +HA I+ G D DL+ N+ ++
Sbjct: 13 KALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGIL 72
Query: 149 NMYAQSQNM 157
+MY + +M
Sbjct: 73 DMYIKCGDM 81
>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
Length = 740
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ KQ+H + +T + ++S L+ +Y+ + S C+ D
Sbjct: 384 TLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDC 443
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRF 124
W S+I N L ++L F RM + V P+ F +VL SC+ L
Sbjct: 444 INELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLH 503
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H +++ G D + AL +MY + +D
Sbjct: 504 GRQFHGLVVKSGYVSDSFVETALTDMYCKCGEID 537
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G ++L + RM+ G P SVL +C+ ++D FG H
Sbjct: 70 VSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGV 129
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ G+D +++ NAL++MYA+
Sbjct: 130 AVKTGLDKNIFVGNALLSMYAK 151
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 27 HAQIFKTLEPNSRFLISRLLFIYNNFNLVHD-SLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
H KT + F+ + LL +Y + D + + ++L P V++ ++I +
Sbjct: 127 HGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP-NEVSYTAVIGGLAREN 185
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVL------KSCTLLVDF---RFGESVHACIIRLG 136
++E++ F M GV D ++L + C L + G+ +H +RLG
Sbjct: 186 KVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLG 245
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
DL+ NN+L+ +YA++++M+
Sbjct: 246 FGGDLHLNNSLLEIYAKNKDMN 267
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 68 PAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P P V AW +++ + E+++ F +M + PD +L SC L G+
Sbjct: 343 PQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGK 402
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H +IR + + + + L+ +Y++ + M++
Sbjct: 403 QIHGVVIRTEISKNSHIVSGLIAVYSECEKMEI 435
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +++HA I + + FL LL +Y V D++ + +L + +W II
Sbjct: 4 QGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSL-FSWNFIIAAF 62
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+N +++ F M +G+ PD SVL +C+ L D G+ +H+ + G+ +
Sbjct: 63 AKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSI 122
Query: 142 YTNNALMNMYAQSQNMDMH--IYDRFQ 166
NAL++MYA+ +D+ ++D+ +
Sbjct: 123 IVQNALVSMYARCSRLDVARVVFDKIE 149
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQ+G E+L + +M G G+ PD F SVL +C+ D G+++HA
Sbjct: 354 VSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHA- 412
Query: 132 IIRLGVDLDLYTNN----ALMNMYAQSQNMDM 159
RL D +++ AL+NMY + +D+
Sbjct: 413 --RLLARKDGFSDGVLVAALINMYVKCGRLDL 442
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 23 AKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ LHA++ + S L++ L+ +Y + S + + K V W ++I
Sbjct: 407 GQALHARLLARKDGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAY 466
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G ++ + M G+ PD + S+L +C L D GE +H II D
Sbjct: 467 EQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEII---ASRDC 523
Query: 142 YTN----NALMNMYA 152
N NAL++MYA
Sbjct: 524 SQNPVVLNALISMYA 538
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ TQN L E+L + M+ V D L L + G +H
Sbjct: 253 VSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHEL 312
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ G D ++ NAL++MY + +D
Sbjct: 313 SVAHGYDSNIKVQNALISMYGKCNELD 339
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L NLL+ V A+ LHA I K E L + ++ Y LV D+ + +
Sbjct: 107 LFNLLRLSVKYTDIDLARALHASILKLGEDTH--LGNAVIAAYIKLGLVVDAYEVFMGMS 164
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
TP V++ ++I ++ E++ F RM SG+ P+ F ++L +C ++ G
Sbjct: 165 TP-DVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGL 223
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
VHA I+LG ++ NAL+ +Y + +D +H++D
Sbjct: 224 QVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDE 263
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 28 AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGL 86
A +F+ + + ++ Y F LV ++ + + K P V++ +++ +N
Sbjct: 360 AALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFN--KMPEKNSVSYNALLTGFCKNNE 417
Query: 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
+++L FVRM+ G V+ +C LL+ +H II+ G + A
Sbjct: 418 GLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAA 477
Query: 147 LMNMYAQSQNMDMHIYDR-FQGFGFNGG 173
L++M ++ MD DR FQ +GG
Sbjct: 478 LIDMCSKCGRMDDA--DRMFQSLSTDGG 503
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I +NGL E++ F R G D F S+L C L G+ +H ++
Sbjct: 510 SMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALK 569
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G +L N++++MY++ N+D
Sbjct: 570 TGFHAELGVGNSIISMYSKCYNID 593
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W+++I+ +NG +E+L F+ M GV P S+L C L G+ VHA +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
+R D+D+Y + LM MY + + I+DRF
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI++L S+ + KQ+HAQ+ + ++ S L+ +Y + S + D
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCT 117
+ + W SII +GL E+L F M SG P+ F + L +C+
Sbjct: 393 PS-KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACS 444
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 2 TSTKTLINLLKNPVSI----KTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLV- 55
T T+++ N +SI KT Q KQLH+Q I + + PN F + LF++ L
Sbjct: 25 TITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTF--QKKLFVFWCSRLGG 82
Query: 56 HDSLCLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
H S +K P P V W ++I+ ++ E + ++ M+ GV PD + FP +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 115 SCTLLVD---FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
L D G+ +H +++ G+ +LY NAL+ MY+ MDM ++DR
Sbjct: 143 G--LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR 195
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I + G ESL F M +G+ PD SVL +C L GE +
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393
Query: 132 IIRLGVDLDLYTNNALMNMY--------AQSQNMDMHIYDRFQ------GFGFNG-GREA 176
I + + D+ NAL++MY AQ DM D+F G NG G+EA
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDFRFGES 127
P V+W S I +NG L E+ F RM +GV P+H F ++L +CT L RFG S
Sbjct: 53 PIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGS 112
Query: 128 VHACIIRLGVDLD-LYTNNALMNMYAQSQNMDM 159
+HA + +LG+D + + AL++MY++ +D+
Sbjct: 113 IHAYVRKLGLDTENVMVGTALVDMYSKCGQLDL 145
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
V +++ L D + + ++W S+I + G ++L F M +GV PD+ SVL
Sbjct: 174 VGEAIVLFDQM-SERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRFQ------ 166
+C L G ++ +++ ++ +N+L++MY++ + ++++
Sbjct: 233 ACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVS 292
Query: 167 ------GFGFNGGREASVH--EVLDKIPERNGNVELSSGLAGCN 202
GF NG E ++ ++ K R V + L C+
Sbjct: 293 WNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACS 336
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++IR N +++ + M G P++ FP VLK+C L+D + G +H ++
Sbjct: 80 WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GN 191
+ G D D++ +L+ +YA+ G H+V D IP++N
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKC------------------GYLEDAHKVFDDIPDKNVVSW 181
Query: 192 VELSSGLAGCNKFEKRV 208
+ SG G KF + +
Sbjct: 182 TAIISGYIGVGKFREAI 198
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H + K F+ + L+ +Y + D+ + D + V+W +II
Sbjct: 133 KIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV-VSWTAIISGYIGV 191
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E++ F R++ + PD VL +CT L D GE +H CI+ +G+ +++
Sbjct: 192 GKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVG 251
Query: 145 NALMNMYAQSQNMD 158
+L++MYA+ NM+
Sbjct: 252 TSLVDMYAKCGNME 265
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 5/195 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ +L + + + +H I + + F+ + L+ +Y + + + D +
Sbjct: 215 TIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 274
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I+ NGL E++ F++M V PD VL +C L G
Sbjct: 275 PEK-DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG 333
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
E V + R + AL+++YA+ +M ++ F+G ++ V +
Sbjct: 334 EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMS-RAWEVFKGM---KEKDRVVWNAIISG 389
Query: 186 PERNGNVELSSGLAG 200
NG V++S GL G
Sbjct: 390 LAMNGYVKISFGLFG 404
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++H +I KT + + LL +Y + D+ + D ++ V+W S++ C
Sbjct: 121 GRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVR-DLVSWSSVVACYV 179
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NG E L M+ GV PD SV ++C + R +SVH +IR + D
Sbjct: 180 ENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDAS 239
Query: 143 TNNALMNMYAQ 153
N+L+ MY Q
Sbjct: 240 LRNSLIVMYGQ 250
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H + + L + L+ +Y + + + + +++ P+ W S+I C
Sbjct: 222 AKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTA-CWTSMISSCN 280
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL---GVDL 139
QNG E++ F +M S V + SVL C L + G+SVH I+R G DL
Sbjct: 281 QNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADL 340
Query: 140 DLYTNNALMNMYA 152
DL ALM+ YA
Sbjct: 341 DL--GPALMDFYA 351
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
LCL+ + V+W ++I + GL E++ FV M+ G+ PD S + +C
Sbjct: 363 LCLIGN----SSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAG 418
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
RFG+ +H + + G D + N+LM+MY++ +D+ I+D+
Sbjct: 419 ASSVRFGQQIHGHVTKRGF-ADEFVQNSLMDMYSKCGFVDLAYTIFDK 465
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K + F+ + L+ +Y+ V + + D + + V W +I +
Sbjct: 425 GQQIHGHVTKRGFAD-EFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSI-VTWNCMICGFS 482
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG+ VE+L F M + + + F S +++C+ G+ +H ++ GV DLY
Sbjct: 483 QNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLY 542
Query: 143 TNNALMNMYAQSQNM 157
+ AL++MYA+ ++
Sbjct: 543 IDTALVDMYAKCGDL 557
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
S T QLHA + T + ++LL Y +H S + +T +P +
Sbjct: 10 SCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSP-DSFMFG 68
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN---VFPSVLKSCTLLVDFRFGESVHACI 132
+I+C + L + ++ + I G N ++PSV+K+ +++ G VH I
Sbjct: 69 VLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRI 128
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
++ G+ D +L+ MY +
Sbjct: 129 VKTGLGTDHVIGTSLLGMYGE 149
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 35 EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVE 89
E RF + LL +Y LV D+ L T P V W ++I Q G E
Sbjct: 206 EGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAE 265
Query: 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN----N 145
++ M+ GV PD F S L +C+ L G +HA +++ D DL N +
Sbjct: 266 AVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK---DADLAANSFVAS 322
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
AL++MYA ++ + AS V D +PE
Sbjct: 323 ALVDMYAGNEKV------------------ASARRVFDMVPE 346
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIR 79
+++HA + K L NS F+ S L+ +Y V + + D + P+ + W ++I
Sbjct: 301 GREMHAVVLKDADLAANS-FVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMIC 359
Query: 80 CCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
Q G+ E+L F RM +G P VL +C F E++H +++ G+
Sbjct: 360 GYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMA 419
Query: 139 LDLYTNNALMNMYAQSQNMDM 159
+ + NALM+MYA+ MD+
Sbjct: 420 GNRFVQNALMDMYARLGEMDV 440
Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 41/183 (22%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+H + K +RF+ + L+ +Y ++ ++D P V+W ++I C
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMID----PRDVVSWNTLITGCV 464
Query: 83 QNGLLVESLTCFVRMI----------------GSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
G E+ M P++ ++L C L G+
Sbjct: 465 VQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGK 524
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
+H +R ++ D+ +AL++MYA+ G A+ V D++P
Sbjct: 525 EIHGYAVRHALESDIAVGSALVDMYAKC------------------GCLAASRAVFDRLP 566
Query: 187 ERN 189
RN
Sbjct: 567 RRN 569
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 44 RLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY 103
L + +F+ + ++ + +T++ P + W +++R + V +L +VRM+ G
Sbjct: 3 ELCVVSPHFDGLPYAISVFETIQEPNLLI-WNTMLRGHASSSDPVSALEMYVRMVSLGHL 61
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHI 161
P+ FP +LKSC F G +HA +++LG LD Y + +L++MYA++ ++ +
Sbjct: 62 PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121
Query: 162 YDR------------FQGFGFNGGREASVHEVLDKIPERN 189
+D G+ G S +V D+I ER+
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFR-SARKVFDEITERD 160
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--- 66
LLK+ K + +Q+HAQ+ K R++ + L+ +Y + D+ + D
Sbjct: 70 LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129
Query: 67 ---------------------------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
T V+W ++I +NG E+L F M+
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLDLYTNNALMNMYAQSQ 155
+ V PD SV+ +C G VH+ + G L NAL+++Y++
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249
Query: 156 NMDMHIYDRFQGF 168
+++ + F+G
Sbjct: 250 DVET-AFGLFEGL 261
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE----PNSRFLISRLLFIYNNFNLVHDSLCL 61
TL++++ + +Q+H+ + + +S +++ L+ +Y+ V + L
Sbjct: 198 TLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGL 257
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ L V+W ++I T L E+L F M+ SG P+ SVL +C L
Sbjct: 258 FEGLSCK-DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGA 316
Query: 122 FRFGESVHACIIR--LGVDLDLYTNNALMNMYAQSQNMD 158
G +H I + GV + +L++MYA+ +++
Sbjct: 317 IDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIE 355
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
P W ++R ++ LL E++ ++ MI G+ PD+ FP++LK+ L D G+ +HA
Sbjct: 58 PEWWIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHA 117
Query: 131 CIIRLGVDLDLYT-NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ + G +D T N L+N+Y + + FG +V++V D+I ERN
Sbjct: 118 HVYKFGYGVDSVTVANTLVNLYRKCGD-----------FG-------AVYKVFDRISERN 159
Query: 190 GNVELSSGLAGCNKFEK 206
V +S ++ FEK
Sbjct: 160 -QVSWNSLISSLCSFEK 175
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + E NS F+I+ L+ +Y + S LL + + V W +++
Sbjct: 217 GKQVHAYGLRKGELNS-FIINTLVAMYGKMGKLASSKVLLGSFEG-RDLVTWNTVLSSLC 274
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QN +E+L M+ GV PD SVL +C+ L R G+ +HA ++ G +D +
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334
Query: 142 YTNNALMNMY 151
+ +AL++MY
Sbjct: 335 FVGSALVDMY 344
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 23 AKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K+LHA K +L+ NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 317 GKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGL-WNAMITG 374
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
QN E+L F+ M S G+ + V+ +C F E++H +++ G+D
Sbjct: 375 YAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDR 434
Query: 140 DLYTNNALMNMYAQSQNMDM 159
D + NALM+MY++ +D+
Sbjct: 435 DRFVQNALMDMYSRLGKIDI 454
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I LL+ + S+ ++H+ + KT+ L + LL ++ F + ++ +
Sbjct: 95 ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGK 154
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ +W ++ + G E+L + RM+ G+ PD FP VL++C L D
Sbjct: 155 M-AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH +IR G + D+ NAL+ MY +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVK 242
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +N + +E L F M V PD SV+ +C L D R G VH
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321
Query: 132 IIRLGVDLDLYTNNALMNMYA 152
+I+ G ++ NN+L+ M++
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHS 342
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W SII N E+L F +MI S + P+ SVL +C + G+ +HA
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAH 522
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+R G+ D + NAL++MY + M+
Sbjct: 523 ALRTGLGFDGFLPNALLDMYVRCGRME 549
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +NGL +++ + M GV PD SVL +C L G +H
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
R G+ + N+L++MY++ + +D
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCID 449
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H Q+ + + F ++ ++ +Y ++ D+ + D + T V W +II
Sbjct: 160 RGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRM-TERDLVCWNTIISGY 218
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNGL +L ++ G PD SVL + + RFG+++HA +IR G D +
Sbjct: 219 AQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLV 278
Query: 142 YTNNALMNMYAQSQNM 157
+ AL++MY++ ++
Sbjct: 279 NISTALVDMYSKCDSL 294
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L I++ K +HA + + + + L+ +Y+ + + + + D +
Sbjct: 245 TIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGM 304
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I C +NG E+ F +M+ G+ P VL +C D G
Sbjct: 305 GSRTV-VTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQG 363
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ VH + L +D ++ N+L++MY++ + +D
Sbjct: 364 KFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVD 396
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I QNG L E+L F M + PD SV+ + L R + +H
Sbjct: 411 VSWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGL 470
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR +D ++ AL++MYA+
Sbjct: 471 VIRRLLDDTVFVMTALVDMYAK 492
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++++ + QAK +H + + L ++ F+++ L+ +Y +H + L + +
Sbjct: 447 TMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMM 506
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + W S+I +GL E++ FV M + P+ F VL +C+
Sbjct: 507 -SERHVITWNSMIDAYGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSACS 557
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+ +HA I K+ ++ + ++ +Y V D++ D ++ P +W +++
Sbjct: 383 RSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGP-DIASWNTLLSGFYS 441
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
L F +I GV + + +L+ CT L+D RFG VHAC+++ G D
Sbjct: 442 GNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDV 501
Query: 144 NNALMNMYAQS 154
+ L++MY Q+
Sbjct: 502 SKMLLDMYVQA 512
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
L+ + + + K LHA++ ++ FL LL +Y + D+ + D +
Sbjct: 67 LQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPH-RD 125
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
VAW +++ T G +L F M GV P+ + LK+CT+ D F VHA
Sbjct: 126 VVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHA 185
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
++L D Y +++L+ Y +D+
Sbjct: 186 QAVKLEGLFDPYVSSSLVEAYVSCGEVDV 214
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQ 83
Q+HAQ K ++ S L+ Y + V + L L +P V+W +++ +
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERAL--LDSPVRSDVSWNALLNEYAR 239
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+G + + F +++ SG P+VLK C L + G++VH +I+ G++ D
Sbjct: 240 DGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVL 299
Query: 144 NNALMNMYAQ 153
NN L+ MY++
Sbjct: 300 NNCLIEMYSK 309
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +LK + + + +H + K R L + L+ +Y+ D+ +
Sbjct: 261 SKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVF 320
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ P V +I C ++ + E+ F++M GV P+ F + + D
Sbjct: 321 ARIDEP-DVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDV 379
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--YDRFQG 167
S+HA I++ G +A++ MY ++ + I +D QG
Sbjct: 380 NLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQG 426
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH+ K+ NS + S L+ +Y + D+ L D T V W +II Q+
Sbjct: 586 QLHSYTIKS-GWNSSVVSSALVDMYVKCGNLADAEMLFDESDTH-DLVEWNTIICGYAQH 643
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
G ++L F MI G PD F VL +C+
Sbjct: 644 GHGYKALEAFQEMIDEGNVPDEITFVGVLSACS 676
>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 20 KSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ + +++HA + +T L N + + L+ +Y + D+ C + L V+W S+I
Sbjct: 875 RRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADA-CSVFELMVEKDSVSWNSLI 933
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
QN ++ F+RM +G P + S L SC L GE +H ++LG+D
Sbjct: 934 SGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLD 993
Query: 139 LDLYTNNALMNMYAQS 154
D+ +NAL+ +YA++
Sbjct: 994 TDVSVSNALLALYAET 1009
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T IN+L S+ + Q+HA + K + + + LL Y +++ +
Sbjct: 1062 SRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIF 1121
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V+W S+I N LL +++ M+ G D F +VL +C +
Sbjct: 1122 ARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATL 1181
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VHAC IR ++ D+ +AL++MY++ +D
Sbjct: 1182 ERGMEVHACGIRACMESDVVVGSALVDMYSKCGRID 1217
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S++T +L+ +A++LH Q K + FL + L+ IY + + L
Sbjct: 542 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 601
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLL 119
D + + V W +I TQNG E+ F M+ +G P+H F S L++C +
Sbjct: 602 FDEM-SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGP 660
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ---SQNMDMHIYDR 164
+ G +H I + D+ N L++MY S N ++DR
Sbjct: 661 SGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDR 708
>gi|356515100|ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g58590-like [Glycine max]
Length = 732
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
IYN +L H+++ LL L+ P V+W +I C ++ E F M + ++PD
Sbjct: 488 IYNRTSLYHETIKLLSLLEKP-DAVSWNIVISACARSNSYDEVFALFKHMHSACIHPDSY 546
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGV-DLDLYTNNALMNMYAQSQNMD 158
F S++ CT L G S+H II+ + + D + N L++MY + ++D
Sbjct: 547 TFMSIISVCTKLCLLNLGSSLHGLIIKTNLSNYDTFLGNVLIDMYGKCGSID 598
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I ++ + +L F+ M G+ P F +V+ SCT L + GESVHA
Sbjct: 282 VSWNTVIDALVKSERPMMALDLFLNMARRGLMPSQATFVAVIHSCTSLRNSVCGESVHAK 341
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
IIR G + D+ AL++ Y++ D+F S H+ D+I E+N
Sbjct: 342 IIRSGFESDVIVGTALVDFYSKC--------DKF----------ISAHKCFDQIEEKN 381
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD----FRFGES 127
V W S++ +NG + E F ++G+G+ +VL LVD +GE
Sbjct: 180 VTWNSMVSLLARNGFVEECKILFRDLVGTGISLSEGSVVAVLSG---LVDSEEDLEYGEQ 236
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+H +++ G ++ N+L+++Y + + M
Sbjct: 237 IHGLMVKCGFGCEITAANSLISVYVRCKAM 266
>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +NLL++ + K+LH++I +E + F+ ++L+ +Y L+ + + + +
Sbjct: 85 TYMNLLQSCIDKDCIFIGKELHSRI-GLVENVNPFVETKLVSMYAKCGLLGMARKVFNEM 143
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
W ++I C++N E + F M+ GV PD + P VL++C D G
Sbjct: 144 SV-RNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGKCRDLETG 202
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H+ +IR G+ + N++M +YA+ MD
Sbjct: 203 RLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMD 235
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
AP V W S+I TQ G + +L M +GV ++ S +C L G
Sbjct: 316 APDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGLE 375
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ-----------GFGFNGGR 174
+H+ +++ + ++ N+L++MY + ++ HI+D G F G
Sbjct: 376 IHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGF 435
Query: 175 EASVHEVLDKIPERN 189
HE+ K+ E +
Sbjct: 436 CGKAHELFMKMQESD 450
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
KT +W S+I Q+G ++L F M + P+ S+L C LV +
Sbjct: 486 KTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKV 545
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H +R + +L +N L++ YA+S N+
Sbjct: 546 KEIHCFAVRRILVSELSVSNLLIDSYAKSGNL 577
>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
Length = 1135
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH K + + LL +Y LV + +L+ ++ P V+W + I
Sbjct: 330 GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP-DLVSWTTAISANF 388
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG +++ +M G P+ F SVL SC + G H ++LG D ++
Sbjct: 389 QNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEIC 448
Query: 143 TNNALMNMYAQSQNMD--------MHIYD 163
T NAL+NMY++ M MH +D
Sbjct: 449 TGNALINMYSKCGQMGSARLAFDVMHTHD 477
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ T+NG +L F M+ SGV P+ + L +C L R GE VH+
Sbjct: 80 VAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSL 139
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+R G D + + L+ MY++ ++ ++DR
Sbjct: 140 AVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+H + K L S + + L+ Y+ + + D+L V+W S+++
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV-VSWCSMMQL 288
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++G L E+L F MI GV P+ VL +C G +H I+ + D
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITD 345
Query: 141 LYTNNALMNMYAQS 154
+ +NAL++MY ++
Sbjct: 346 IRVSNALLSMYGRT 359
>gi|89257518|gb|ABD65008.1| PPR repeat containing protein [Brassica oleracea]
Length = 583
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
++ +++LL+ + S +QLH + K + L + L+ Y + + D+ L
Sbjct: 61 TSSVMVHLLRVSGNHGYVSLCRQLHGYVVKHGYVSETRLSNSLMRFYKTSDSLEDAHRLF 120
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + P ++W S++ Q+G L E L F+ + S V+P+ F + L +C L
Sbjct: 121 DEMPDP-DVISWNSLVSGYVQSGRLQEGLCLFLDLERSNVFPNEFSFTAALAACARLKIS 179
Query: 123 RFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMD 158
G +H+ I++LG++ ++ N L++MY + +MD
Sbjct: 180 WLGACIHSKIVKLGMEKGNVVVGNCLIDMYGKCGSMD 216
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 68 PAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P P +W +I+ + E+ F +M GV D VL + LV +G
Sbjct: 288 PNPNSSSWNTILTGYVNSEQSREATLFFTKMHSYGVRLDEYSLSIVLAAIAALVVVPWGR 347
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+C ++LG+D + +AL++MY++
Sbjct: 348 VIHSCGLKLGLDSRVVVASALIDMYSK 374
>gi|218191884|gb|EEC74311.1| hypothetical protein OsI_09581 [Oryza sativa Indica Group]
Length = 1112
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSIIRCCTQN 84
+HA + KT + + LL +Y + L + P VA W S+I C +
Sbjct: 150 IHAYLLKTPASIHTPVANSLLSLYATLGDFASAAILFGEM--PDRDVASWTSMIGACLGS 207
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G ++L F M+ G + PD V VL++C +L D R G SVHA R G+ DL+
Sbjct: 208 GYADQALRLFREMLADGALQPDGVVVVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFV 267
Query: 144 NNALMNMYAQSQNM 157
+N+L++MYA+ ++
Sbjct: 268 DNSLVDMYAKCLDL 281
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97
S L++ LL Y LV D L L ++ + W ++I C NG ++ CFV M
Sbjct: 363 SMALLNALLDAYGKCGLVEDVLRLFQGMRE-RNVITWSTVIAACAHNGRPHAAMACFVAM 421
Query: 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +G P+ S++++C + H +R G+ +L NAL++MY +
Sbjct: 422 LETGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGK 477
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKS 76
++ A+ +HA + + S FL + L+ +Y V D+ + D + PA + +W S
Sbjct: 78 RSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM--PARDMCSWTS 135
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I QN + E+L M+ P+ F S+LK+ GE +HA ++
Sbjct: 136 LIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYD 195
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHI 161
D+Y +AL++MYA+ MDM I
Sbjct: 196 WHDDVYVGSALLDMYARCGRMDMAI 220
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +Q+HA K + ++ S LL +Y + ++ + D L
Sbjct: 167 TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ V+W ++I + G +L F M +G H + SV + + G
Sbjct: 227 ESK-NGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR---------------FQGF 168
+ VHA +I+ G L + N +++MYA+S +M ++DR F +
Sbjct: 286 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQY 345
Query: 169 GFNGGREASVH 179
G GREA H
Sbjct: 346 GL--GREAVTH 354
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 43 SRLLFIYNNFNLVHDSLCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
S+LL +Y + + D+ L D + K W S+I Q G E++ + +M+ G
Sbjct: 129 SKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEG 188
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
V D FP VLK C + + GE VH IR G D + NAL++MY++ ++
Sbjct: 189 VEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI---- 244
Query: 162 YDRFQGFGFNGGREASVHEVLDKIPERN 189
+V DK+P R+
Sbjct: 245 --------------VKARKVFDKMPHRD 258
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LK I + +++H + F+++ L+ +Y+ + + + D
Sbjct: 195 TFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFD-- 252
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P PV+W S++ +GL V+++ F +M+ G PD +VL + L
Sbjct: 253 KMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSL---GL 309
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G +H +I G + +L N+L+ MY+ N GR V +
Sbjct: 310 GVQIHGWVISQGHEWNLSIANSLIMMYS------------------NHGRLEKARWVFNL 351
Query: 185 IPERN 189
+PER+
Sbjct: 352 MPERD 356
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC-CTQ 83
Q+H + + + + L+ +Y+N + + + + L V+W SII C +
Sbjct: 312 QIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFN-LMPERDVVSWNSIISAHCKR 370
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
E+L F +M G+GV PD F S+L +C L + GE + A
Sbjct: 371 R----EALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFA 413
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++K I K H + + ++ ++S L+ +Y ++ D+ L D L
Sbjct: 164 TLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDEL 223
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P PV W ++I T+N L E+L F ++ + PD+ F SVL +C L R
Sbjct: 224 LEP-DPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQ 282
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
GE +HA +I G ++ T ++L++MY + ++ ++DR
Sbjct: 283 GEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDR 324
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC---LLDTL 65
+LL+ + + + ++ +Q HA + K+ RF+ + LL +Y F L DSL + D L
Sbjct: 65 SLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLY--FKLGSDSLLTRRVFDGL 122
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I + G ++ F M+ SG+ P+ +V+K+C+ + + G
Sbjct: 123 FVK-DVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLG 181
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ H ++R G D + ++L++MY +
Sbjct: 182 KCFHGVVVRRGFDSNPVILSSLIDMYGR 209
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +++HA++ + S L+ +Y V S L D + + V+W +++
Sbjct: 282 QGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRM-SNRNSVSWSALLAVY 340
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
NG +++ F M +Y F +V+++C L G+ +H IR G D+
Sbjct: 341 CHNGDYEKAVNLFREMKEVDLYS----FGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDV 396
Query: 142 YTNNALMNMYAQSQ--NMDMHIYDR 164
+AL+++YA+ N ++DR
Sbjct: 397 IVESALVDLYAKCGCINFAYRVFDR 421
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 44/214 (20%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--- 65
++L S++ ++HA+ K + F+ L+ +Y N D+ + DTL
Sbjct: 384 SVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQK 443
Query: 66 --------------------------KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMI 98
K PA +A W +II QN V++L F M+
Sbjct: 444 NIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAML 503
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM- 157
SG P F SVL +C L G+ HA I+LG++ ++ AL +MYA+S ++
Sbjct: 504 ASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQ 563
Query: 158 -------------DMHIYDRFQGFGFNGGREASV 178
D+ QG NG E S+
Sbjct: 564 SSKRMFYQMPERNDVTWTAMIQGLAENGFAEESI 597
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F ++ + LL +Y+ + + +LD + V+W ++I Q G
Sbjct: 303 KVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPER-NEVSWGTLIARHEQRGNAA 361
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ + +M+ G P+ + F SVL +C L D R G +HA +++G +++ + +L+
Sbjct: 362 EAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLI 421
Query: 149 NMYAQSQNMD--MHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
+MY + I+D G+ +NG +++ + K+P RN
Sbjct: 422 DMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMY-LFKKMPARN 475
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG + + F++M G D F VLKSC+ L D G +H
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+++G D D+ T +AL++MYA+ + +D I + +PE+N
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSI------------------QFFHSMPEKNW- 240
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 241 VSWSAIIAGC 250
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H +I K+ F+ L+ +Y+ ++ + L D L V+W +II +
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAIISGFSLQK 510
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+ F +M+ GV PD+ + ++L +C LV G+ +HA II+ + D Y ++
Sbjct: 511 QSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISS 570
Query: 146 ALMNMYAQSQNM 157
L++MY++ NM
Sbjct: 571 TLVDMYSKCGNM 582
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II C QN L L F M +GV + F SV +SC L R G +H
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D+ A ++MY + N+
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNL 326
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 7/196 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+HAQI K + ++ S L+ +Y+ + D + +
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFE-- 590
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V W +++ Q+GL E+L F M V P+H F +VL++C +
Sbjct: 591 KAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEK 650
Query: 125 G-ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G H+ + G+D L + ++++ +S + + + +G F +A + L
Sbjct: 651 GLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL-ELIEGMPFEA--DAVIWRTLL 707
Query: 184 KIPERNGNVELSSGLA 199
I + +GNVE++ A
Sbjct: 708 SICKIHGNVEVAEKAA 723
>gi|297790915|ref|XP_002863342.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309177|gb|EFH39601.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 576
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
L++LL+ + S +QLH + K ++ L + L+ Y + + D+ L D +
Sbjct: 58 LVHLLRVSGNYGYVSLCRQLHGYVVKHGFVSNTRLSNSLMRFYKTSDSLEDAHKLFDEMP 117
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P ++W S++ Q+G E L F+++ S V P+ F + L +C L + G
Sbjct: 118 DP-DVISWNSLVSGYVQSGRFQEGLCLFLKLHRSDVLPNEFSFTAALAACARLHLWPLGA 176
Query: 127 SVHACIIRLGVDL-DLYTNNALMNMYAQSQNMD 158
+H+ I++LG++ ++ N L++MY + +MD
Sbjct: 177 CIHSKIVKLGLEKGNVVVGNCLIDMYGKCASMD 209
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I+ + E+ F +M SGV D VL + L +G +HAC
Sbjct: 287 SWNTILTGYVNSEQSGEATEFFTKMHSSGVGLDEYSLSIVLAAIAALAVVPWGSLIHACA 346
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
++LG+D + +AL++MY++
Sbjct: 347 LKLGLDSRVVVASALIDMYSK 367
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S LL +Y + + D++ + D + V W +++ G ++++ + RM
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRR-DRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
GV D V V+++CT + R G SVH ++R G+ +D+ T +L++MYA++ +D+
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+I +++ + + +H + + + L+ +Y L+ D C + L
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL-DVACRVFGL 269
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I QNG E+L F M SG+ PD S L +C+ + + G
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG 329
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SVH I+R D + A ++MY++
Sbjct: 330 RSVHGFIVRR-FDFNCILGTAAIDMYSK 356
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+ W ++I CC +G ++LT F M +G+ PDH F S+L +
Sbjct: 376 ILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSA 419
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 27/135 (20%)
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++ G +L F R + PD F L +C L D R GESV G D+
Sbjct: 85 SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143
Query: 142 YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201
+ ++L +H+Y R+ G +V D++P R+ V S+ +AG
Sbjct: 144 FVCSSL-----------LHLYARWGAMG-------DAVKVFDRMPRRD-RVTWSTMVAG- 183
Query: 202 NKFEKRVVSAGHDAD 216
VSAG D
Sbjct: 184 ------FVSAGQPLD 192
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
K+ + K++HA I K F S L+ + + + + + ++ P +
Sbjct: 42 KSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGS-FEYN 100
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++IR + L E+L +V M+ G+ PD+ +P VLK+C+LLV + G +HA +
Sbjct: 101 TMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNA 160
Query: 136 GVDLDLYTNNALMNMYAQ 153
G+++D++ N L++MY +
Sbjct: 161 GLEVDVFVQNGLISMYGK 178
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ Q+HA +F F+ + L+ +Y + + + + + + +W SII
Sbjct: 149 EGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV-ASWSSIIGAH 207
Query: 82 TQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ E L M G + + ++ S L +CT L G +H ++R +L+
Sbjct: 208 ASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELN 267
Query: 141 LYTNNALMNMYAQSQNMD 158
+ +L++MY + +++
Sbjct: 268 VVVKTSLIDMYVKCGSLE 285
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 19/129 (14%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L L P P W +IR + + +S++ +++M+ G+ PDH +P ++KS + L
Sbjct: 64 FLSKLSDP-PNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLS 122
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ + G S+H +++ G++ DL+ N L++MY ++ +AS +
Sbjct: 123 NRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD------------------QASARK 164
Query: 181 VLDKIPERN 189
+ D++P +N
Sbjct: 165 LFDEMPHKN 173
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 51 NFNLVHDSLCLLDTLKT--PAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
LV D++ L + P P +A W +++ C ++G E+L RM+ G++PD
Sbjct: 249 RLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDAT 308
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
S+LKS R G VH +R G+ D YT AL++MYA+ +D
Sbjct: 309 TVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLD 359
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG +S F M GV P +L++C L + G+ +H
Sbjct: 444 VSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCF 503
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
+R D D+ AL++MY+++ ++ I+ R Q
Sbjct: 504 ALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQ 540
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W SII C+QNG +E+L F M GV P+ PS++ +C + G+ +H
Sbjct: 342 VTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCF 401
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+R G+ D+Y +AL++MYA+
Sbjct: 402 SLRRGIFDDVYVGSALIDMYAK 423
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP---VAWKSIIRCCTQNG 85
++F + + S ++ Y+ LV ++ L +++ V+W ++ NG
Sbjct: 160 KLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNG 219
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F M+ G +PD + VL + L D G VH +I+ G+ D + +
Sbjct: 220 FYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVS 279
Query: 146 ALMNMYAQ 153
A+++MY +
Sbjct: 280 AMLDMYGK 287
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 16 SIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-A 73
S + SQA+Q HA I + L +++ S L F N +L L L + P P + +
Sbjct: 12 STASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFS 71
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
+ S+I ++ LT F + + PD + PS +KSC L G+ +HA
Sbjct: 72 FSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAA 131
Query: 134 RLGVDLDLYTNNALMNMY 151
G D ++L +MY
Sbjct: 132 ASGFLTDSIVASSLTHMY 149
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVA--WKSIIRCCTQNGLLVESLTCFVRMIGSGV 102
L+ Y N +L LL L TP+P W ++IR + GLL SL+ F M
Sbjct: 77 LISTYLALNAPSHALSLLQCL-TPSPSAVYWWNALIRRAVRLGLLQHSLSLFRTMRRLNW 135
Query: 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
PDH FP V K+C L F G +HA + G D +++ NA++ MY +
Sbjct: 136 SPDHYTFPFVFKACGELPSFLHGSCIHAIVCSTGFDSNVFVCNAVVAMYGR 186
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 36/217 (16%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL------EPNSRFLI-SRLLFIYNNFNLVHDS 58
TL++LL S+ K+ H K + +P L+ + ++ +Y ++
Sbjct: 384 TLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDINVG 443
Query: 59 LCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFP 110
+ +++ PP V W ++I Q+G ++L F +M+ V P+
Sbjct: 444 RAIFNSI----PPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTIS 499
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMDMH--IYDRFQ- 166
L +C L RFG +HA ++R D D LY N L++MY++S +MD ++D +
Sbjct: 500 CALMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKH 559
Query: 167 -----------GFGFNGGREASVHEVLDKIPERNGNV 192
G+G +G E ++ +V D++ R G V
Sbjct: 560 RNTVSWTSLMTGYGMHGHGEEAI-KVFDEM-RREGLV 594
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG---VYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S+I Q+G L + F RM G + PD +VL +C + D+ G+ V
Sbjct: 209 VSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQV 268
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ 166
H IR G+ D++ N+L++MYA+ M + ++DR Q
Sbjct: 269 HGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQ 308
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 49 YNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
Y+ D+L L + + K V+W ++I Q GL E+L F +M G+ P+
Sbjct: 322 YSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYEALNVFRQMQVCGLRPN 381
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-------LYTNNALMNMYAQSQNMD 158
S+L C + G+ H I+ ++ D L NA+++MY + +++
Sbjct: 382 EVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDI- 440
Query: 159 MHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
N GR + + IP ++ NV + + G
Sbjct: 441 ------------NVGR-----AIFNSIPPKDRNVVTWTAMIG 465
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S KT+++LL N S + KQ+HA +T ++ L+ Y N + + + L
Sbjct: 27 SQKTILDLL-NTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALK 85
Query: 63 DTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
P P V + II+ C QN +++ C+ +M+ + P+ +P++ K+CT
Sbjct: 86 VFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEA 145
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
G VHA +I+ G+ D++ +A + MY
Sbjct: 146 AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYG 176
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I + G E+L F M + P V SVL +C L G +HA
Sbjct: 259 ISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAY 318
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+ D AL++MYA+ +DM +D F+
Sbjct: 319 VNNNSNSFDAVLGTALVDMYAKCGRLDM-AWDVFE 352
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
N L +R++ +Y DS + D L++ W ++I ++N L E L F+
Sbjct: 118 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSK-NLFQWNAVISSYSRNELYDEVLETFIE 176
Query: 97 MIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
MI + + PDH +P V+K+C + D G +VH +++ G+ D++ NAL++ Y
Sbjct: 177 MISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYG 233
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + KT F+ + L+ Y V D+L L D + V+W S+IR + NG
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM-PERNLVSWNSMIRVFSDNG 267
Query: 86 LLVESLTCFVRMI---GSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
ES M+ G G + PD +VL C + G+ VH ++L +D +L
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 327
Query: 142 YTNNALMNMYAQ 153
NNALM+MY++
Sbjct: 328 VLNNALMDMYSK 339
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K+ K++H I + F+ +L +Y + + L D +
Sbjct: 498 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 557
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V+W ++I QNG +L F +M+ G+ V +C+LL R G
Sbjct: 558 EDKSL-VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
HA ++ ++ D + +L++MYA++ ++
Sbjct: 617 REAHAYALKHLLEDDAFIACSLIDMYAKNGSI 648
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I Q+ SL ++M SG+ PD S+L +C+ L R G+ VH I
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522
Query: 133 IRLGVDLDLYTNNALMNMY 151
IR ++ DL+ +++++Y
Sbjct: 523 IRNWLERDLFVYLSVLSLY 541
>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 652
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK +++ S K++HA FK + ++ S L+ Y+ F V D+ + D L
Sbjct: 162 TFPSLLKGSDAMEV-SDVKKVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDEL 220
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ + ++L F +M GV + SVL S T+ D G
Sbjct: 221 PDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNG 280
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
S+H +++G D + +NAL+++Y +S+ ++
Sbjct: 281 RSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLE 313
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T I L+ K +Q+H + K +S ++ L+ +Y L+ ++ +
Sbjct: 61 TSIATLQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFG- 119
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + ++I NG ++++ + M G+ PD FPS+LK + +
Sbjct: 120 -GSERDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGSDAM-EVSD 177
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
+ VHA +LG D Y +AL+ Y++ +++ +V D+
Sbjct: 178 VKKVHALAFKLGFVSDCYVGSALVTSYSKFMSVE------------------DAQKVFDE 219
Query: 185 IPERNGNV---ELSSGLAGCNKFEKRVV 209
+P+R+ +V L +G + +FE ++
Sbjct: 220 LPDRDDSVLWNALVNGYSHIFRFEDALI 247
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 35 EPNSRF--LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLT 92
E NS F + R LF +N+ VHD C +G +L
Sbjct: 314 EANSIFEAMDERDLFTWNSVLCVHD---------------------YCGDHDG----TLA 348
Query: 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV----DLDLYTNNALM 148
F M+ SG+ PD +VL +C L + G +H +I G+ + + +N+LM
Sbjct: 349 LFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLM 408
Query: 149 NMYAQSQNM 157
+MY + ++
Sbjct: 409 DMYVKCGDL 417
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T +++K+ + + +H + + ++ + L+ Y ++ ++ +
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D ++ + V W S+I QNG E++ F RM GV P+ F SVL +C L F
Sbjct: 170 DKMRDRSV-VTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAF 228
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G VH + G+DL++ +L+NMY + N+ + EV
Sbjct: 229 ILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNV------------------SKAREVF 270
Query: 183 DKIPERN--GNVELSSGLAGCNKFEKRVVSAGHD 214
D + ERN + SG G N + + V H+
Sbjct: 271 DSMKERNVVAWTAMISGY-GTNGYGSQAVELFHE 303
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAP-PVAWKSIIRCC 81
Q+HA + + SRFL+++LL N S+ L P P + S+IR
Sbjct: 30 QVHAHVIVSGYGCSRFLLTKLL----NLACAAGSISYTRQIFLIVPNPDSFLFTSLIRST 85
Query: 82 TQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ + V SL + RM+ S V P + F SV+KSC LV R G +H ++ G D
Sbjct: 86 SKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSD 145
Query: 141 LYTNNALMNMYAQ 153
+Y ALM+ Y +
Sbjct: 146 VYVQTALMSFYGK 158
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L+ S+ K+LHAQI K + ++ S L+++Y D+ +L L
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I C+ G E+L MI GV P+ + S LK+C G
Sbjct: 447 PSR-DVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIG 505
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
S+H+ + +++ +AL++MYA+ G + V D +
Sbjct: 506 RSIHSIAKKNHALSNVFVGSALIHMYAKC------------------GFVSEAFRVFDSM 547
Query: 186 PERN 189
PE+N
Sbjct: 548 PEKN 551
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N + S L++ Y + +L D ++ ++W ++I C+
Sbjct: 203 GRQVHGNMVKVGVGN-LIVESSLVYFYAQCGELTSALRAFDMMEEK-DVISWTAVISACS 260
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G ++++ F+ M+ P+ S+LK+C+ RFG VH+ +++ + D++
Sbjct: 261 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVF 320
Query: 143 TNNALMNMYAQ 153
+LM+MYA+
Sbjct: 321 VGTSLMDMYAK 331
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K +Q+H+ + K + F+ + L+ +Y + D + D +
Sbjct: 286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W SII + G E+++ F M + ++ S+L++C + G
Sbjct: 346 -SNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG 404
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +HA II+ ++ ++Y + L+ +Y + G VL ++
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKC------------------GESRDAFNVLQQL 446
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHDAD 216
P R+ V ++ ++GC+ S GH+++
Sbjct: 447 PSRD-VVSWTAMISGCS-------SLGHESE 469
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H+ K ++ F+ S L+ +Y V ++ + D++ V+WK++I
Sbjct: 505 GRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEK-NLVSWKAMIMGYA 563
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+NG E+L RM G D +F ++L +C D E+V +
Sbjct: 564 RNGFCREALKLMYRMEAEGFEVDDYIFATILSTCG---DIELDEAVES 608
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W ++I + GL E+ F + G+ + + +F +L C+ +F G VH
Sbjct: 149 VTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHG 208
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++++GV +L ++L+ YAQ
Sbjct: 209 NMVKVGVG-NLIVESSLVYFYAQ 230
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T++ +L I + KQLH+ + K F + L+ +Y + D+
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L+ + W S+I QN E+L + RM +G+ P+ SVLK+C+ L
Sbjct: 381 DCLQERDVAL-WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATL 439
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH I+ G L++ +AL MY++ +++
Sbjct: 440 ELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLE 475
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W +++ +QNG +E++ F RM +G+ P VL +C+ + G+ +H+
Sbjct: 287 SITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346
Query: 131 CIIRLGVDLDLYTNNALMNMYAQS 154
+++LG + L+ AL++MYA++
Sbjct: 347 FLLKLGFERHLFATTALVDMYAKA 370
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + K S+++ + +Q HA + K ++ + L+ +Y LV D L + +
Sbjct: 120 TLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYM 179
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCF---VRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
W +++ G + E++ F +R G D+ VF +VL S +
Sbjct: 180 P-ERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDY-VFTAVLSSLAATIYV 237
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H I+ G+ + +NAL+ MY++ ++++
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLN 273
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTC---FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S+I +QNG + S T F M + P+ + K+ + L G
Sbjct: 81 VSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQA 140
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
HA ++++ D+Y + +L+ MY ++
Sbjct: 141 HALVVKMSSFGDIYVDTSLVGMYCKA 166
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK S+ T KQ+H K + S L +Y+ + D +
Sbjct: 425 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFR-- 482
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+TP V +W ++I + NG E+L F M+ G+ PD F +++ +C+
Sbjct: 483 RTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L+ S+ K+LHAQI K + ++ S L+++Y D+ +L L
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I C+ G E+L MI GV P+ + S LK+C G
Sbjct: 447 PSR-DVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIG 505
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
S+H+ + +++ +AL++MYA+ G + V D +
Sbjct: 506 RSIHSIAKKNHALSNVFVGSALIHMYAKC------------------GFVSEAFRVFDSM 547
Query: 186 PERN 189
PE+N
Sbjct: 548 PEKN 551
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N + S L++ Y + +L D ++ ++W ++I C+
Sbjct: 203 GRQVHGNMVKVGVGN-LIVESSLVYFYAQCGELTSALRAFDMMEEK-DVISWTAVISACS 260
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G +++ F+ M+ G P+ S+LK+C+ RFG VH+ +++ + D++
Sbjct: 261 RKGHGNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVF 320
Query: 143 TNNALMNMYAQ 153
+LM+MYA+
Sbjct: 321 VGTSLMDMYAK 331
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K +Q+H+ + K + F+ + L+ +Y + D + D +
Sbjct: 286 TVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W SII + G E+++ F M + ++ S+L++C + G
Sbjct: 346 -SNRNTVTWTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLG 404
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +HA II+ ++ ++Y + L+ +Y + G VL ++
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKC------------------GESRDAFNVLQQL 446
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHDAD 216
P R+ V ++ ++GC+ S GH+++
Sbjct: 447 PSRD-VVSWTAMISGCS-------SLGHESE 469
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H+ K ++ F+ S L+ +Y V ++ + D++ V+WK++I
Sbjct: 505 GRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEK-NLVSWKAMIMGYA 563
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+NG E+L RM G D +F ++L +C
Sbjct: 564 RNGFCREALKLMYRMEAEGFEVDDYIFATILSTC 597
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W ++I + GL E+ + F + G+ + + +F +L C+ +F G VH
Sbjct: 149 VTWTAMIDGYLKFGLEDEAFSLFEDYVKHGIRFTNERMFVCLLNLCSRRSEFELGRQVHG 208
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++++GV +L ++L+ YAQ
Sbjct: 209 NMVKVGVG-NLIVESSLVYFYAQ 230
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
KQ+H K+ + ++ + L+ +Y + ++ + D L V W +II C +
Sbjct: 61 KQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGL-LEKSAVTWTTIITACVK 119
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G SL F +M + V PD + SVL +C+ L + G+ +H ++R G+++D+
Sbjct: 120 RGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSF 179
Query: 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC-- 201
N L++ Y +S G+ S ++ D + +RN + ++ +AG
Sbjct: 180 VNVLIDFYTKS------------------GKVQSARKLFDGMADRN-VISWTAMIAGYMQ 220
Query: 202 NKFEKRVV 209
N F++ V
Sbjct: 221 NSFDREAV 228
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQ+H + + +E + F ++ L+ Y V + L D + ++W ++I
Sbjct: 161 GKQIHGHVLRRGIEIDVSF-VNVLIDFYTKSGKVQSARKLFDGM-ADRNVISWTAMIAGY 218
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN E++ F+ M G PD V S+L SC L G VHA I+ V+ D+
Sbjct: 219 MQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDI 278
Query: 142 YTNNALMNMYAQSQNMD 158
+ N L++MYA+ +++
Sbjct: 279 FLQNGLIDMYAKCGSLN 295
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL ++ KQ+HA I K F S L+ Y+ + + D+ + D +
Sbjct: 346 TFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKM 405
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V W +++ TQ E+L + + S P+ F ++ + + L + G
Sbjct: 406 -TEKDIVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHG 464
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
+ H II+ G+D +T N+L++MYA+ +++ D + FG
Sbjct: 465 QQFHNHIIKTGLDSHPFTTNSLIDMYAKCGSLE----DARKAFG 504
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 2 TSTKTLINLLKNPVSI----KTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLV- 55
T T+++ N +SI KT Q KQLH+Q I + + PN F + LF++ L
Sbjct: 25 TITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTF--QKKLFVFWCSRLGG 82
Query: 56 HDSLCLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
H S +K P P V W ++I+ ++ E + ++ M+ GV PD + FP +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 115 SCTLLVD---FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
L D G+ +H +++ G+ +LY NAL+ MY+ MDM ++DR
Sbjct: 143 G--LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR 195
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I + G ESL F M +G+ PD SVL +C L GE +
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393
Query: 132 IIRLGVDLDLYTNNALMNMY--------AQSQNMDMHIYDRFQ------GFGFNG-GREA 176
I + + D+ NAL++MY AQ DM D+F G NG G+EA
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG + + F++M G D F VLKSC+ L D G +H
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+++G D D+ T +AL++MYA+ + +D I + +PE+N
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSI------------------QFFHSMPEKNW- 240
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 241 VSWSAIIAGC 250
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
IK + Q+H K+L ++ + + +L +Y + ++ CL+ V+W +
Sbjct: 389 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEA-CLVFEEMVSRDAVSWNA 447
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
II QNG ++L+ FV M+ SG+ PD + SVLK+C G +H II+
Sbjct: 448 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 507
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+ LD + AL++MY++ M+ ++DR
Sbjct: 508 LGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 538
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + + ++H +I K+ F+ L+ +Y+ ++ + L D L
Sbjct: 479 TYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 538
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II + E+ F +M+ GV PD+ + ++L +C LV G
Sbjct: 539 -AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 597
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +HA II+ + D Y ++ L++MY++ NM
Sbjct: 598 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 629
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II C QN L L F M +GV + F SV +SC L R G +H
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++ D+ A ++MY + N+
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNL 326
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 7/196 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+HAQI K + ++ S L+ +Y+ + D + +
Sbjct: 580 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFE-- 637
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V W +++ Q+GL E+L F M V P+H F +VL++C +
Sbjct: 638 KAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEK 697
Query: 125 G-ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G H+ + G+D L + ++++ +S + + + +G F +A + L
Sbjct: 698 GLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL-ELIEGMPFEA--DAVIWRTLL 754
Query: 184 KIPERNGNVELSSGLA 199
I + +GNVE++ A
Sbjct: 755 SICKIHGNVEVAEKAA 770
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H +I ++ +++ + LL +Y NF V + + D +K ++W ++I +NG
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNR-DVISWNTMISGYYRNG 197
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI--IRLGVDLDLYT 143
+ ++L F M+ V DH S+L C L D G +VH + RLG +++
Sbjct: 198 YMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEV-- 255
Query: 144 NNALMNMYAQSQNMD--MHIYDRFQ 166
NAL+NMY + MD ++DR +
Sbjct: 256 KNALVNMYLKCGRMDEARFVFDRME 280
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++S K +LL + + ++ S+ K LH + T S ++S L Y + +
Sbjct: 12 LSSVKQYQSLLNHFAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALCGHITYARK 70
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV--YPDHNVFPSVLKSCTL 118
L + + + +++ +IR + GL ++++ F+RM+ GV PD +P V K+
Sbjct: 71 LFEEMP-QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGE 129
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
L + G VH I+R D Y NAL+ MY ++M
Sbjct: 130 LKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEM 170
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +II C QN L+ ++L F RM V P+ S+L + L D R ++H +
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ G L L+++Y++ ++
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLE 472
>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 687
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ + +L + S K Q+H Q K + ++ S L+ +Y + H++ + + L
Sbjct: 216 SYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVL 275
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I+ TQN L ++L F+ M GV P+ + L SC L + G
Sbjct: 276 PEK-NIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG 334
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ AC ++ G L NALMNMY++S +++
Sbjct: 335 NALGACTMKTGHWGLLPVCNALMNMYSKSGSVE 367
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+++ +Q H K ++ S +L +Y + +++ + D + + A+ S
Sbjct: 126 VRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSS-FNVFAFNS 184
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I G + S + M+ + DH + +VL C + G VH ++
Sbjct: 185 MINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRR 244
Query: 137 VDLDLYTNNALMNMYAQ 153
++L++Y +AL++MY +
Sbjct: 245 LELNVYVGSALVDMYGK 261
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 44/220 (20%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T+ ++ ++ ++ +Q+H QI + F S L+ +Y L+ D+ +
Sbjct: 148 SRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVF 207
Query: 63 DTL------------------------------KTPAPPVAWKSIIRCCTQNGLLVESLT 92
D + + W +++ TQNGL E+L
Sbjct: 208 DEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALD 267
Query: 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
F RM GV D F S+L +C L G+ +HA IR D +++ +AL++MY+
Sbjct: 268 VFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYS 327
Query: 153 QSQNMDM--HIYDRFQ------------GFGFNGGREASV 178
+ +++ + ++ R G+G NG E +V
Sbjct: 328 KCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAV 367
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ + KQ+HA +TL + F+ S L+ +Y+ + + + +
Sbjct: 283 TFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM 342
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I QNG E++ F M G+ P+ SV+ SC L G
Sbjct: 343 -TCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEG 401
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H + G+ + ++AL+ +Y + +++
Sbjct: 402 AQFHCMALVSGLRPYITVSSALVTLYGKCGSIE 434
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNN--FNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ +QLHA KT N F+ SRLL +Y++ N + + + D ++ + + W +II
Sbjct: 30 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSL-IHWNTII 88
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+C +N + + F ++ + PD+ P V+K C L + G+ +H +++G
Sbjct: 89 KCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147
Query: 139 LDLYTNNALMNMYAQSQNMD 158
D++ +L+NMY++ +D
Sbjct: 148 SDVFVQGSLVNMYSKCGEID 167
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I NG ++++ F M+ G P H SVL + + L G +H+
Sbjct: 224 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 283
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ + G +LD +L+ MYA+
Sbjct: 284 MEKNGFELDGILGTSLIEMYAK 305
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL+ S+ + +KQ+H +FK F S L+ +Y+N + DS + D +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V W S+ Q E+L F+ + S PD F +++ + L + G
Sbjct: 516 KVK-DLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ H +++ G++ + Y NAL++MYA+
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAK 602
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I C + G SL F +++ V PD + +VL +C++L G+ +HA
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAH 274
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+R G+++D N L++ Y + GR + H++ + +P +N
Sbjct: 275 ILRYGLEMDASLMNVLIDSYVKC------------------GRVIAAHKLFNGMPNKN 314
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QN L E++ F M G+ PD S+L SC L FG VHA
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ + D Y N+L++MYA+
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAK 397
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESV-- 128
V+W +++ C +G+ ESL F+ + P+ + S +++C+ L D R V
Sbjct: 111 VSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGL-DGRGRWMVFQ 169
Query: 129 -HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+ +++ G D D+Y L++ Y + N+D Y R V D +PE
Sbjct: 170 LQSFLVKSGFDRDVYVGTLLIDFYLKDGNID---YARL---------------VFDALPE 211
Query: 188 RNGNVELSSGLAGCNKFEKRVVS 210
++ V ++ ++GC K + VS
Sbjct: 212 KS-TVTWTTMISGCVKMGRSYVS 233
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 86/212 (40%), Gaps = 20/212 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N++ ++ + ++ H Q+ K + ++ + LL +Y D+ D+
Sbjct: 557 TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS- 615
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I +G ++L +M+ G+ P++ F VL +C+ G
Sbjct: 616 AASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
++R G++ + ++++ ++ GR E+++K+
Sbjct: 676 LKQFELMLRFGIEPETEHYVCMVSLLGRA------------------GRLNKARELIEKM 717
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHDADL 217
P + + S L+GC K V A H A++
Sbjct: 718 PTKPAAIVWRSLLSGCAK-AGNVELAEHAAEM 748
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L + S+ Q+HA K N ++ + L+ +Y + + D+ + D
Sbjct: 355 SILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF-AA 413
Query: 69 APPVAWKSIIRCCTQNGL---LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
A V + ++I ++ G L E+L F M + P F S+L++ L
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA 152
+ +H + + G++LD++ +AL+++Y+
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYS 500
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 19/75 (25%)
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH II G++LD Y +N L+N+Y+++ M +Y R +V +K+PE
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGM---VYAR---------------KVFEKMPE 107
Query: 188 RNGNVELSSGLAGCN 202
RN V S+ ++ CN
Sbjct: 108 RN-LVSWSTMVSACN 121
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +HA K + F+ + L+ +Y V ++ + +T++ V+W S++ C+
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNR-NLVSWNSVMYACS 272
Query: 83 QNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+NG E F R++ S G+ PD +V+ +C + + R G VH +LG+
Sbjct: 273 ENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITE 332
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGR 174
++ NN+L++MY++ ++ + F NGG+
Sbjct: 333 EVTVNNSLVDMYSKCG----YLGEARALFDMNGGK 363
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I QNG +SL F+ M+ SG+ PD S+L +C L R G+ +H +
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ 166
+R G++LD + +LM++Y Q +M + I+D+ +
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKME 564
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K K++H + + F+ L+ +Y + + + D +
Sbjct: 504 TIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKM 563
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V W +I +QN L E+L F +M+ G+ P VL +C+ + R G
Sbjct: 564 ENKSL-VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLG 622
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
+ VH+ ++ + D + AL++MYA+ M+ +I+DR
Sbjct: 623 KEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR 663
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 23 AKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+++HA + + + N L +R++ +Y+ DS + D K + +++
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK-DLFLYNALLSGY 169
Query: 82 TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++N L ++++ F+ ++ + + PD+ P V K+C + D GE+VHA ++ G D
Sbjct: 170 SRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSD 229
Query: 141 LYTNNALMNMYAQ 153
+ NAL+ MY +
Sbjct: 230 AFVGNALIAMYGK 242
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 20/140 (14%)
Query: 68 PAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P P V +W +++ Q G+ +S+ V M GV PD +LK+C L D G
Sbjct: 97 PDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGV 156
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
+HA ++ G+++D+ +AL++MY + ++++ + RF F+G +
Sbjct: 157 QIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDAL--RF----FHG------------MG 198
Query: 187 ERNGNVELSSGLAGCNKFEK 206
ERN +V + +AGC + E+
Sbjct: 199 ERN-SVSWGAAIAGCVQNEQ 217
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK +++ +H + K+ F+ S ++ +Y ++ ++ L D +
Sbjct: 441 TYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRI 500
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII + N E+ F M+ GV PDH + +VL +C L G
Sbjct: 501 GGQ-ELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELG 559
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQGFGF 170
+ +H II+ + D Y ++ L++MYA+ NM + ++++ Q F
Sbjct: 560 KQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDF 606
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II QN +++ M+ G+ PD + SVLK+C L +G VH
Sbjct: 405 VSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGK 464
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
I+ G+ LD + ++ +++MY + + ++DR G
Sbjct: 465 AIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGG 502
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+H QI K ++ S L+ +Y + DSL + +
Sbjct: 542 TYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKA 601
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +G E+L F RM + V P+H F +VL++C+
Sbjct: 602 Q-KLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACS 652
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL LLK ++ + Q+HA KT LE + R S L+ +Y + D+L
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVR-AGSALVDMYGKCRSLEDALRFFHG 196
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W + I C QN L FV+M G+ + SV +SC +
Sbjct: 197 MGER-NSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLST 255
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+HA I+ D A++++YA++ ++
Sbjct: 256 ARQLHAHAIKNKFSADRVVGTAIVDVYAKADSL 288
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++ ++ +I S A+QLHA K R + + ++ +Y + + D+
Sbjct: 236 SQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAF 295
Query: 63 DTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+L P V A +++ + GL E+L F M SG+ D V +C +
Sbjct: 296 FSL--PNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKG 353
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+ G VH I+ G D+D+ NA++++Y + + + + Y FQ
Sbjct: 354 YLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKAL-VEAYLVFQ 397
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 19/199 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLD 63
TL++LL K+ + K+LHA I L F+ L F +N + S +
Sbjct: 16 TLLSLLDK---CKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFS 72
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ +P +W IIR + + + SL+ F++M+ GV PD+ +P ++K+ L +
Sbjct: 73 QISSPTI-FSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQK 131
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQN-MDMH-IYDRFQG---FGFNG------ 172
G SVHA II+ G + D + N+L++MYA N M H +++ QG +N
Sbjct: 132 SGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYA 191
Query: 173 --GREASVHEVLDKIPERN 189
G A +V + + ER+
Sbjct: 192 KCGEMAMAQKVFESMQERD 210
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + + + +H I L P + L + L+ +Y + ++L + +
Sbjct: 248 TMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGI 307
Query: 66 -KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K+ W ++I +GL+ ESL F M +G+ D + +L +C
Sbjct: 308 SKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACA 360
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 5 KTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+TL N LLK + + K +H + + + + + LLF+Y + + L D
Sbjct: 74 RTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFD 133
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ V+W S+I QN ++L F RM+ G P+ S++K C + +
Sbjct: 134 EM-PHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYN 192
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +HAC + G +++ ++L++MYA+
Sbjct: 193 CGRQIHACCWKYGCHSNVFVGSSLVDMYAR 222
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L+K + + + +Q+HA +K ++ F+ S L+ +Y + +++ + D L
Sbjct: 177 TLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL 236
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I + G E+L FVRM G P + ++L SC+ + G
Sbjct: 237 GCKNE-VSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +HA +++ L Y N L++MYA+S ++
Sbjct: 296 KWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSI 327
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T LL + S+ Q K LHA + K+ + ++ + LL +Y + D+ + D L
Sbjct: 278 TYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL 337
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+ S++ Q+GL E+ F MI G+ P+ F SVL +C+
Sbjct: 338 -VKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACS 388
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
IK + Q+H K+L ++ + + +L +Y + ++ CL+ V+W +
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEA-CLVFEEMVSRDAVSWNA 384
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
II QNG ++L+ FV M+ SG+ PD + SVLK+C G +H II+
Sbjct: 385 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 444
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
+ LD + AL++MY++ M+ ++DR
Sbjct: 445 MGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 475
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK + + ++H +I K+ F+ L+ +Y+ ++ + L D L
Sbjct: 416 TYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 475
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II + E+ F +M+ GV PD+ + ++L +C LV G
Sbjct: 476 -AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 534
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +HA II+ + D Y ++ L++MY++ NM
Sbjct: 535 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 566
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ T KQ+HAQI K + ++ S L+ +Y+ + D + +
Sbjct: 517 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFE-- 574
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V W +++ Q+GL E+L F M V P+H F +VL++C +
Sbjct: 575 KAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEK 634
Query: 125 G-ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
G H+ + G+D L + ++++ +S + + + +G F +A + L
Sbjct: 635 GLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL-ELIEGMPFEA--DAVIWRTLL 691
Query: 184 KIPERNGNVELSSGLA 199
+ +GNVE++ A
Sbjct: 692 SXCKIHGNVEVAEKAA 707
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
T KT ++ + K KQ HA++ T + F+ + L+ +Y + + + +
Sbjct: 40 TKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKV 99
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG---------------VYPDH 106
D + V+W +++ G + + F M G+G D
Sbjct: 100 FDGMPQ-RDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDR 158
Query: 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS--QNMDM 159
F VLKSC+ L D G +H +++G D D+ T +AL++MYA+ QN D+
Sbjct: 159 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDL 213
>gi|413923907|gb|AFW63839.1| hypothetical protein ZEAMMB73_177478 [Zea mays]
Length = 637
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II C + GL E+L VRM SG D V S + +C L D G + H
Sbjct: 319 VSWNTIISCYARLGLCEEALETIVRMQESGFTIDRFVLGSGVAACANLADIDSGRAFHGY 378
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRF 165
+IR +D D+ +AL++MY + MD+ ++DR
Sbjct: 379 LIRRALDTDVIQGSALVDMYGKCGYMDLARLVFDRM 414
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 19/191 (9%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
++ T +NLL+ + + +Q+H + + + L + L+ +Y + S L
Sbjct: 452 SNQHTFVNLLRLCGDRRYREYGRQIHGHAIRVINQMNVVLETELIDMYAKCGCIEVSQLL 511
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ V+W +++ +G V ++ + +M + V PDH +L C
Sbjct: 512 FLRMNE-RNLVSWNTLLSGYVGDGQPVATVNIYRQMELARVGPDHYTLAGLLNMCRFQGL 570
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
R+G +HA +I+ G ++++ L++MY F R H V
Sbjct: 571 LRYGRQIHAHLIKTGSEMNVVLQTLLVHMY------------------FKCRRWRDAHNV 612
Query: 182 LDKIPERNGNV 192
I ERN +V
Sbjct: 613 CTLIRERNSHV 623
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 49 YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
Y + LV D+ + D + P V+W II ++ ++ F M SG+ P+ +V
Sbjct: 196 YIDLGLVDDASKVFDDISQP-NVVSWSVIIGGYARSSQWDKAWDAFSAMQCSGLPPNGSV 254
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++C L G+ H + LG + + N L++MY + +++
Sbjct: 255 LVMAIQACGALGCLVRGKQAHTVAVVLGFERNATVWNCLIDMYGKCGSVE 304
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ +NGL+ +L F +M + + + + F ++L+ C +G +H
Sbjct: 420 VSWDALLSGFVENGLVDSALDTFRQMESAKIKSNQHTFVNLLRLCGDRRYREYGRQIHGH 479
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
IR+ +++ L++MYA+
Sbjct: 480 AIRVINQMNVVLETELIDMYAK 501
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA I K + F+ S L+ Y + + D + T V W SII Q+G
Sbjct: 193 MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVT-CDLVVWNSIIAGFAQSG 251
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
V ++ F+RM SG + SVL++CT +V G VHA +++ D DL +N
Sbjct: 252 DGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKY--DRDLILHN 309
Query: 146 ALMNMYAQ 153
AL++MY +
Sbjct: 310 ALLDMYCK 317
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN-GLLVESLTCFVR 96
S F+ + L+ +Y F ++ D+L L + V+W +++ G E+L V
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQ-RNVVSWTTVVAALANAPGRKKEALRFLVE 164
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M GV + F SVL +C ++HA II++G+D D++ ++L++ Y + +
Sbjct: 165 MRRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGD 221
Query: 157 MD 158
+D
Sbjct: 222 LD 223
>gi|297800494|ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313967|gb|EFH44390.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T LL+ K ++ K++HAQ+ + +L +LL +Y LD
Sbjct: 109 ETYAVLLQECKQRKEYTKGKRIHAQMIVVGYAPNEYLKVKLLILYA-----------LDL 157
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ W ++I Q GL E L + M +G+ PD F SV + C+ L
Sbjct: 158 -------IPWNAMISGYVQKGLEQEGLYIYYDMRQNGIVPDQYTFASVFRVCSALASLEH 210
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ HA +I+ + ++ ++AL++MY F+ F+ G H+V D+
Sbjct: 211 GKRAHAVMIKRHIKSNIIVDSALVDMY-------------FKCSSFSDG-----HKVFDQ 252
Query: 185 IPERN 189
+ RN
Sbjct: 253 LSTRN 257
>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
Length = 848
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N+L + + + + +HA++ K ++ L S LL +Y+ D+ + +T+
Sbjct: 359 TATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTI 418
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K VAW S+I QN +E+L + M G PD ++ SV+ +CT L + G
Sbjct: 419 KG-RDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLG 477
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
++H I+ G++ D++ ++L++MY++
Sbjct: 478 CTIHGLAIKSGLEQDVFVASSLVDMYSK 505
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H K+ F+ S L+ +Y+ FN S + + VAW SII C +NG
Sbjct: 480 IHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNL-VAWNSIISCYCRNG 538
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
L S++ F +M G++PD SVL S + + R G++VH +IR + DL N
Sbjct: 539 LPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLEN 598
Query: 146 ALMNMYAQ 153
AL++MY +
Sbjct: 599 ALIDMYIK 606
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + K N ++ + LL +Y+ LV D+ + D + + W ++I N
Sbjct: 277 QVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTEL-WNAMISAYVGN 335
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G + L + +M + PD +VL SC L+ + FG +HA +++ + ++
Sbjct: 336 GRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQ 395
Query: 145 NALMNMYAQSQNMD 158
+AL+ MY++ N D
Sbjct: 396 SALLTMYSKCGNSD 409
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AKQ+H + + FL S L+++Y + D+ L L+ VAW +I
Sbjct: 173 AKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFG 232
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+NGL SL ++ V F S L +C FG VH +++LG + D Y
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPY 292
Query: 143 TNNALMNMYAQSQ 155
+L+ MY++ +
Sbjct: 293 VCTSLLTMYSKCK 305
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-D 140
Q G V++L + R + + +PS+LK+C L + ++G+++H+ II G D
Sbjct: 28 VQQGQYVDALQFYSR---NPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
Y +L+N Y F G + +V DK+PE
Sbjct: 85 PYITTSLINFY------------------FKCGSFGNAVKVFDKLPE 113
>gi|413944102|gb|AFW76751.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 248
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLH--AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+LL++ + Q K +H A I + P L ++L+ Y++F V + + D +
Sbjct: 16 SLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMP 75
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ V+W +++ +N E+L F M+ SG P+ F S +++CT R GE
Sbjct: 76 HRSV-VSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGE 134
Query: 127 SVHACIIRLGVDLDLYTNNALMNMY 151
+HAC + D++ +ALM+M+
Sbjct: 135 QIHACAAKGRFAGDMFVQSALMDMH 159
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K ++ + K++H IF FL + L+ +Y FNL+ ++ L D
Sbjct: 287 TYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFD-- 344
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V+W ++I + L ++ M GV P+ F SVL++C L D +
Sbjct: 345 KMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK- 403
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ I+++G++ D++ +AL+++Y++
Sbjct: 404 --QLHSWIMKVGLESDVFVRSALIDVYSK 430
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
KQLH+ I K + F+ S L+ +Y+ + ++L + + T V W SII Q
Sbjct: 403 KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMT-GDSVVWNSIIAAFAQ 461
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
+ E+L + M G D + SVL++CT L G H +++ D DL
Sbjct: 462 HSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKF--DQDLIL 519
Query: 144 NNALMNMYAQSQNMD 158
NNAL++MY + +++
Sbjct: 520 NNALLDMYCKCGSLE 534
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK++HAQI K+ + L + LL Y NL+ D+ L D + V+W SI+
Sbjct: 21 AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQ-RDHVSWASILTAYN 79
Query: 83 QNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q L ++L+ F M + + PDH V+ ++LK+C L R G+ VHA + D
Sbjct: 80 QAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDD 139
Query: 142 YTNNALMNMYAQ 153
++L++MYA+
Sbjct: 140 VVKSSLVDMYAK 151
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 65 LKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDF 122
L+TP + +W ++I Q+G ++ F+ M GV D V SV+ +C L
Sbjct: 194 LRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVL 253
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H +I G + L+ +NAL++MYA+ ++
Sbjct: 254 GLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDI 288
>gi|218194166|gb|EEC76593.1| hypothetical protein OsI_14444 [Oryza sativa Indica Group]
Length = 438
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ LLK S A+++H I KT E + + L+ +Y F + D+ + T
Sbjct: 155 TVSTLLKGSSSSLAFLHARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMDDAWAVATT 214
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + S+ R Q GL +L FVRM V D S L S L
Sbjct: 215 MAFIRDRFTYTSLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLASIET 274
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H+C ++LG+ D+ +N+L++MY++ + M
Sbjct: 275 GKQLHSCSVKLGLSSDISVSNSLIDMYSKCKCM 307
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +II ++G L +L F M + V P+ + +++ +C+ + G +HA
Sbjct: 17 VLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNAFTYAALISACSSFRALQPGRQIHAR 76
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQN 156
+ + G++ D NAL+++Y++S +
Sbjct: 77 LFKFGLEHDTSVCNALVDLYSKSSS 101
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+ S + +Q+HA++FK + + + L+ +Y+ + L LL T
Sbjct: 53 TYAALISACSSFRALQPGRQIHARLFKFGLEHDTSVCNALVDLYSKSS--SRLLDLLHTF 110
Query: 66 KTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
P V+W ++I +G E+ F +M SGV P+ ++LK + + F
Sbjct: 111 HAVDKPNVVSWTALIAGLACHGRDEEAFLAFSQMRLSGVLPNSFTVSTLLKGSSSSLAFL 170
Query: 124 FGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMD 158
+H I++ + LD N+L+++Y + MD
Sbjct: 171 HARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMD 206
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 19 TKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
T Q Q+HAQIF L NSR ++++L+ + + +L + P V + ++
Sbjct: 52 TLPQLHQIHAQIFLHNLFSNSR-VVTQLISSSCSLKSLDYALSIFRCFDHPNLFV-FNAL 109
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
IR +N S++ FV M+ + PD P VLKS LVD G +H +++LG+
Sbjct: 110 IRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ D + +L++MY + + GFG ++ D+ P+RN
Sbjct: 170 EFDSFVRVSLVDMYVKIGEL---------GFGL---------QLFDESPQRN 203
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +QNG ++L+ F RM+ GV P+ S L +CT + + GE +H
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+ G L+ AL++MYA+ N+
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNI 356
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 37/205 (18%)
Query: 32 KTLEPNSRFLISR------------LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
K EPNS F + R ++ Y + + D+ + + + V+W ++I
Sbjct: 259 KCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYT-VSWAALIS 317
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+NG E+L F +MI GV P F SVL +C G+ VH IIR G
Sbjct: 318 GFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIR-GRSS 376
Query: 140 D----LYTNNALMNMYAQSQNMD---------MHIYD------RFQGFGFNGGREASVHE 180
D +Y NALM+MYA+ +M +H+ D GF NG E S+
Sbjct: 377 DNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSL-A 435
Query: 181 VLDKIPERN---GNVELSSGLAGCN 202
V D++ E N +V L+ CN
Sbjct: 436 VFDRMIESNIEPNHVTFLGVLSACN 460
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 19 TKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
T Q Q+HAQIF L NSR ++++L+ + + +L + P V + ++
Sbjct: 52 TLPQLHQIHAQIFLHNLFSNSR-VVTQLISSSCSLKSLDYALSIFRCFDHPNLFV-FNAL 109
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
IR +N S++ FV M+ + PD P VLKS LVD G +H +++LG+
Sbjct: 110 IRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ D + +L++MY + + GFG ++ D+ P+RN
Sbjct: 170 EFDSFVRVSLVDMYVKIGEL---------GFGL---------QLFDESPQRN 203
>gi|115469032|ref|NP_001058115.1| Os06g0625800 [Oryza sativa Japonica Group]
gi|51535726|dbj|BAD37743.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596155|dbj|BAF20029.1| Os06g0625800 [Oryza sativa Japonica Group]
Length = 433
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LL+ V+ + K++HA++ +++++LL Y + + + D + +
Sbjct: 41 LLQECVNRRDARMGKRIHARMVSVGFGGGVYIVTKLLIFYVKIGELGVARKVFDGMPQRS 100
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
VAW ++I C + G ++ F M G+ PD F SVL +C L G VH
Sbjct: 101 V-VAWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHGRRVH 159
Query: 130 ACIIRLGV-DLDLYTNNALMNMY 151
+++ V +++ ++AL++MY
Sbjct: 160 GVMVKSRVGGGNVFVDSALVDMY 182
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +II +NG +ES++ F +M+ V P+ F S++ +C+ L + G SVH
Sbjct: 218 VVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGY 277
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR GV+LD+ + ++MYA+
Sbjct: 278 MIRNGVELDVKNYTSFIDMYAK 299
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I+ ++N + L F RM+ G D +K+C L F+ + H+
Sbjct: 29 SWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLA 88
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+L ++ D Y ALMN+Y + +++ H+V +++P +N
Sbjct: 89 IKLRLEGDPYVAPALMNVYTELGSLE------------------EAHKVFEEVPLKN 127
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+++HA ++L+ F+ + L+ Y F+ V D+ + D + + V+W +++ +
Sbjct: 369 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDARKVFDEMPERSV-VSWTAMMNAYLK 427
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G E + F M+GSGV + F +LKSC D + G+ VH CI++ G ++
Sbjct: 428 LGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIV 486
Query: 144 NNALMNMYAQ 153
++A+ + YAQ
Sbjct: 487 DSAIAHFYAQ 496
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ LL S+++ K+LHAQI K ++ + S L++ Y + +L+ +
Sbjct: 653 TIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAM 712
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I G VE+L M+ GV P+ + S LK+C L ++G
Sbjct: 713 PD-RDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYG 771
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H + + +++ ++L++MY + +D V D +
Sbjct: 772 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVD------------------EARRVFDAM 813
Query: 186 PERN 189
PE N
Sbjct: 814 PEHN 817
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 22/205 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LLK+ +Q+H I K N + S + Y V + + D +
Sbjct: 452 TFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNV-IVDSAIAHFYAQCGDVASASAIFDKM 510
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ ++W ++I Q+G ++L F M+ G P+ SVLK+C RFG
Sbjct: 511 AS-RDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFG 569
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H +++ D++ +AL+ MYA+ G V D +
Sbjct: 570 KQLHCAVLKKMYKNDIHIGSALVTMYARC------------------GEVFDAQAVFDMM 611
Query: 186 PERNGNVELS--SGLAGCNKFEKRV 208
P RN S SG A EK +
Sbjct: 612 PRRNTITWTSMISGYAQSGHGEKAI 636
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K KQLH + K + N + S L+ +Y V D+ + D +
Sbjct: 552 TVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM 611
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I Q+G +++ F +M V+ ++ +L +C L G
Sbjct: 612 PR-RNTITWTSMISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLG 670
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA II+ ++ +L + L+ Y +
Sbjct: 671 KELHAQIIKNSMEDNLQIGSTLVWFYCK 698
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T + LK ++ +++H + KT + ++ F+ S L+ +Y V ++ + D
Sbjct: 752 TYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFD 811
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ V WK II QNGL E+L M G D V +VL SC
Sbjct: 812 AMPE-HNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSC 863
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLKTPAPPVAWK 75
KT + KQ HAQI F+ ++L+ Y+ V + + D L + W
Sbjct: 31 KTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDL-SERDVFCWN 89
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I+ G E+L + M SG P+ +P VLK+C D G +H +++
Sbjct: 90 NVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKC 149
Query: 136 GVDLDLYTNNALMNMYAQSQNMD 158
G++ DL+ NA + YA+ + ++
Sbjct: 150 GLEFDLFVGNAFVAFYAKCKEIE 172
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 22/121 (18%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI---GSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S++ NG + E++ F M+ G G +PD+ +VL + D G +
Sbjct: 187 VSWNSMMSGYIANGYVDEAVMLFCDMLRDDGIG-FPDNATLVTVLPAFAEKADIHAGYWI 245
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
H I++ G+ LD L+ +Y+ N G V D+IP+R
Sbjct: 246 HCYIVKTGMKLDPAVGCGLITLYS------------------NCGYIRMAKAVFDQIPDR 287
Query: 189 N 189
N
Sbjct: 288 N 288
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L +H I KT + L+ +Y+N + + + D +
Sbjct: 225 TLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQI 284
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W +IIRC +G E+L+ F +++ G++ D VF S+L +C+
Sbjct: 285 -PDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACS 335
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+++HA ++L+ F+ + L+ Y F+ V D+ + D + + V+W +++ +
Sbjct: 67 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSV-VSWTAMMNVYLK 125
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G E + F M+GSGV + F +LKSC D + G+ VH CI++ G ++
Sbjct: 126 LGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIV 184
Query: 144 NNALMNMYAQ 153
++A+ + YAQ
Sbjct: 185 DSAIAHFYAQ 194
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ LL S+++ K+LHAQI K + + S L++ Y + +L+ +
Sbjct: 351 TIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAM 410
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I G VE+L M+ GV P+ + S LK+C L ++G
Sbjct: 411 PDR-DAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYG 469
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H + + +++ ++L++MY + +D V D +
Sbjct: 470 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVD------------------EARSVFDAM 511
Query: 186 PERN 189
PE N
Sbjct: 512 PEHN 515
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 22/206 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LLK+ +Q+H I K N + S + Y V + + D +
Sbjct: 150 TFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNV-IVDSAIAHFYAQCGDVASASAIFDKM 208
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I Q+G ++L F M+ G P+ SVLK+C RFG
Sbjct: 209 AYR-DVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFG 267
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +H +++ D++ +AL+ MYA+ G V D +
Sbjct: 268 KQLHCAVLKKMYKNDIHIGSALVTMYARC------------------GEVFDAQAVFDMM 309
Query: 186 PERNGNVELS--SGLAGCNKFEKRVV 209
P RN S SG A EK ++
Sbjct: 310 PRRNTITWTSMISGYAQSGHGEKAIL 335
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K KQLH + K + N + S L+ +Y V D+ + D +
Sbjct: 250 TVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM 309
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I Q+G +++ F +M V+ ++ +L +C L G
Sbjct: 310 PRR-NTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLG 368
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA II+ ++ +L + L+ Y +
Sbjct: 369 KELHAQIIKNSMEENLQIGSTLVWFYCK 396
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T + LK ++ +++H + KT + ++ F+ S L+ +Y V ++ + D
Sbjct: 450 TYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFD 509
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ V WK II QNGL E+L M G D V +VL SC
Sbjct: 510 AMPEH-NLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSC 561
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
S+ ++LH + K ++ S L+ +Y+ + S + + + V W
Sbjct: 461 ASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKM-SAKDEVTW 519
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I QNG E+L F +MI GV ++ S+L +C L +G+ +H II+
Sbjct: 520 NSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK 579
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ DL+ +AL++MY + N+++ +
Sbjct: 580 GPIRADLFAESALIDMYGKCGNLELAL 606
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W +I C QNGL+ ++L F M SG+ PD S+L + T L F+ G+ +H
Sbjct: 315 VTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGY 374
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
I+R +D++ +AL+++Y + +++ M
Sbjct: 375 IVRNCAHVDVFLVSALVDIYFKCRDVRM 402
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)
Query: 7 LINLLKNPVS-----IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
L+ LL+ V+ + + A+ + + + P L +RL+ +Y D++ +
Sbjct: 39 LLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAV 98
Query: 62 LDTL--KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKSCT 117
+L A + W +IR T G ++ +V+M S PD + P V+KSC
Sbjct: 99 FSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
L G VH LG+D D+Y +AL+ MYA + +D
Sbjct: 159 ALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLD 199
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 17/212 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LL + Q K++H I + FL+S L+ IY V + + D
Sbjct: 351 TLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDAT 410
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K+ V ++I N + ++ F ++ G+ P+ + S L +C + R G
Sbjct: 411 KS-IDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG 469
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY--------------DRFQGFGFN 171
+ +H +++ + Y +ALM+MY++ +D+ Y F N
Sbjct: 470 QELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQN 529
Query: 172 GGREASVHEVLDKIPE--RNGNVELSSGLAGC 201
G E ++ I E + NV +SS L+ C
Sbjct: 530 GEPEEALDLFRQMIMEGVKYNNVTISSILSAC 561
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 21/169 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRC 80
Q +Q+HA + T SR L+++L+ + + + + L L P P + S+I+
Sbjct: 24 QLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLF--LSVPLPDDFLFNSVIKS 81
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ L + + + RM+ S V P + F SV+KSC L + G+ VH + G LD
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLD 141
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
Y AL+ Y++ +M+ + +V D++PE++
Sbjct: 142 TYVQAALVTFYSKCGDME------------------AARQVFDRMPEKS 172
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ QNGL +++ F +M SG PD F S+L +C G VH
Sbjct: 174 VAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQY 233
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+ G+D+++ AL+N+Y++ G EV DK+ E N
Sbjct: 234 IVSEGLDVNVKLGTALINLYSRC------------------GDVGKAREVFDKMKETN 273
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I LL+ + S+ ++H+ + KT+ L + LL ++ F + ++ +
Sbjct: 95 ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGK 154
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ +W ++ + G E+L + RM+ G+ PD FP VL++C L D
Sbjct: 155 M-AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VH +IR G + D+ NAL+ MY +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVK 242
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +N + +E L F M V PD SV+ +C L D R G VH
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321
Query: 132 IIRLGVDLDLYTNNALMNMYA 152
+I+ G ++ NN+L+ M++
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHS 342
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W SII N E+L F +MI S + P+ SVL +C + G+ +HA
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAH 522
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+R G+ D + NAL++MY + M+
Sbjct: 523 ALRTGLGFDGFLPNALLDMYVRCGRME 549
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +NGL +++ + M GV PD SVL +C L G +H
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
R G+ + N+L++MY++ + +D
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCID 449
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y +++ D+ + +T+ +AW SII TQNG E+L F +M VYP
Sbjct: 379 LVDMYAKCHMIGDARYVFETV-FDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYP 437
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQ 153
D SVL +C + +R G S+H I+ G + +Y AL+N YA+
Sbjct: 438 DAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAK 487
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ + ++LH QI K P+S F+++ L+ +Y V DS + D +
Sbjct: 144 VLKACSELRETDEGRKLHCQIVKVGSPDS-FVLTGLVDMYAKCREVEDSRRVFDEI-LDR 201
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W S+I QN L E L F RM V + S++ +CT L G+ VH
Sbjct: 202 NVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVH 261
Query: 130 ACIIRLGVDLDLYTNNALMNMY 151
+I+ G DL+ + L+++Y
Sbjct: 262 GYVIKSGFDLNSFLVTPLLDLY 283
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L+ + Q K +H + K+ + FL++ LL +Y + D+ + D L
Sbjct: 240 TLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL 299
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V+W ++I Q G E+L F + P+ SVL +C G
Sbjct: 300 ST-IDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 358
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
SVH I+LG + D NAL++MYA+
Sbjct: 359 RSVHCLGIKLGSE-DATFENALVDMYAK 385
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
KT S +++HA + ++L+ +Y +F V + + D ++ P +WK +
Sbjct: 50 KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP-DLYSWKVM 108
Query: 78 IRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
IR N E + + R+ D+ VF VLK+C+ L + G +H I+++G
Sbjct: 109 IRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG 168
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
D + L++MYA+ + ++
Sbjct: 169 SP-DSFVLTGLVDMYAKCREVE 189
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+L+ ++ A+ +HA + + S FL + L+ +Y V D+ + D + P
Sbjct: 69 SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM--P 126
Query: 69 APPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
A + +W S+I QN + E+L M+ P+ F S+LK+ GE
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+HA ++ D+Y +AL++MYA+ MDM I
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAI 220
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +Q+HA K + ++ S LL +Y + ++ + D L
Sbjct: 167 TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++ V+W ++I + G +L F M +G H + SV + + G
Sbjct: 227 ESKNG-VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDR---------------FQGF 168
+ VHA +I+ G L + N +++MYA+S +M ++DR F +
Sbjct: 286 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQY 345
Query: 169 GFNGGREASVH 179
G GREA H
Sbjct: 346 GL--GREAVTH 354
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Query: 22 QAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ K H I K ++ FL + L+ +Y + +L L + + + V W +II
Sbjct: 232 EGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEI-SYRDVVVWSAIIAG 290
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+NG +ES++ F +M+ V P+ F S++ +C+ L + G SVH +IR GV+LD
Sbjct: 291 FARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELD 350
Query: 141 LYTNNALMNMYAQ 153
+ + ++MYA+
Sbjct: 351 VKNYTSFIDMYAK 363
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
TKTL++L + KT + QL+AQI S + Y +H + +
Sbjct: 15 TKTLLSLFR---FTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFN 71
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ T +W +I+ ++N + L F RM+ G D +K+C L F+
Sbjct: 72 HI-TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQ 130
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183
+ H+ I+L ++ D Y ALMN+Y + +++ H+V +
Sbjct: 131 GAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLE------------------EAHKVFE 172
Query: 184 KIPERN 189
++P +N
Sbjct: 173 EVPLKN 178
>gi|222635914|gb|EEE66046.1| hypothetical protein OsJ_22034 [Oryza sativa Japonica Group]
Length = 425
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T LL+ V+ + K++HA++ +++++LL Y + + + D +
Sbjct: 29 TYALLLQECVNRRDARMGKRIHARMVSVGFGGGVYIVTKLLIFYVKIGELGVARKVFDGM 88
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ VAW ++I C + G ++ F M G+ PD F SVL +C L G
Sbjct: 89 PQRSV-VAWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHG 147
Query: 126 ESVHACIIRLGV-DLDLYTNNALMNMY 151
VH +++ V +++ ++AL++MY
Sbjct: 148 RRVHGVMVKSRVGGGNVFVDSALVDMY 174
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+ LL+ + ++ S+ + +H + KT ++ F++S L+ +Y + D+ + D +
Sbjct: 71 VPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNM-L 129
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
VAW +++ QN ++ F M+ +G YP +VL +C+ L + G+
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
HA II+ VD D +AL ++Y++ ++
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLE 220
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S TL +L S+++ Q HA I K + S L +Y+ + D+L
Sbjct: 167 SVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTF 226
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
++ ++W S + C NG V+ L FV MI + P+ S L C ++
Sbjct: 227 SRIREK-NVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSL 285
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
G V++ I+ G + +L N+L+ +Y +S
Sbjct: 286 ELGTQVYSLCIKFGYESNLRVRNSLLYLYLKS 317
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E+L F ++ SG+ PD SVL C+ ++ GE +HA I+ G D+ + +L+
Sbjct: 364 EALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLI 423
Query: 149 NMYAQSQNMD 158
+MY++ +++
Sbjct: 424 SMYSKCGSIE 433
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q +Q+HAQ KT + + + L+ +Y+ + + + T +AW S+I
Sbjct: 399 QGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTM-IAWTSMITGF 457
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+Q+G+ ++L F M +GV P+ F VL +C+
Sbjct: 458 SQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACS 493
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I+L+ S ++ +Q +++H I + L + +L +Y + D+ + D
Sbjct: 68 RTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDF 127
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V++ S+I +QNG E++ +++M+ + PD F S++K+C D
Sbjct: 128 MP-ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGL 186
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA +I+L L NAL+ MY + M
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQM 219
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++L+ P+++ SQ Q+H+ I K + + LL +Y + ++ L
Sbjct: 373 SLRSLLCAQTKPMAL---SQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLF 429
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + A V+W +I+ C Q+ VE L F M+ S PDH ++L+ C +
Sbjct: 430 EDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ G VH ++ G+ + + N L++MYA+
Sbjct: 490 KLGSQVHCYSLKTGLAPEQFIKNGLIDMYAK 520
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQLHAQ+ K LE +S + L+ +Y FN + D+ + + ++W SII
Sbjct: 187 GKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK-DLISWSSIIAGF 244
Query: 82 TQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+Q G E+L+ M+ GV+ P+ +F S LK+C+ L+ +G +H I+ + +
Sbjct: 245 SQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGN 304
Query: 141 LYTNNALMNMYAQ 153
+L +MYA+
Sbjct: 305 AIAGCSLCDMYAR 317
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ NLL+ V I + Q+H KT +F+ + L+ +Y + + + D++
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I Q+G E+L F M +G+ P+H F VL +C+
Sbjct: 535 DNR-DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
LK S+ Q+H K+ + L +Y ++ + + D ++ P
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP-D 335
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+W II NG E+++ F +M SG PD S+L + T + G +H+
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395
Query: 131 CIIRLGVDLDLYTNNALMNMY 151
II+ G DL N+L+ MY
Sbjct: 396 YIIKWGFLADLTVCNSLLTMY 416
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLH--AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+LL++ + Q K +H A I + P L ++L+ Y++F V + + D +
Sbjct: 16 SLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMP 75
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ V+W +++ +N E+L F M+ SG P+ F S +++CT R GE
Sbjct: 76 HRSV-VSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGE 134
Query: 127 SVHACIIRLGVDLDLYTNNALMNMY 151
+HAC + D++ +ALM+M+
Sbjct: 135 QIHACAAKGRFAGDMFVQSALMDMH 159
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA K F+ S L+ ++ V D+ L ++ V+W S++R
Sbjct: 133 GEQIHACAAKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERK-DLVSWNSLMRGFV 191
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ++L F M+ G+ PDH F S LK+C + E +HACII+LG +
Sbjct: 192 EREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENV 251
Query: 143 TNNALMNMYAQSQNMDMH--IYD 163
+L++ YA+ +++ IYD
Sbjct: 252 AIASLIDSYAKCRSLSSARVIYD 274
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+L+ + N SIK +Q +HA + K L + L+ +Y DS D +
Sbjct: 322 SLLGVCANVASIKFGTQ---IHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEM 378
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I C Q+G +++T F RM GV P+ F S+L +C+
Sbjct: 379 PNR-NVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACS 429
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY------NNFNLVHDSL 59
T + LK +I + +HA I K + I+ L+ Y ++ +++DS+
Sbjct: 217 TFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIASLIDSYAKCRSLSSARVIYDSM 276
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
C D + + A ++ S+ R + +++ F ++ G+ D + S+L C +
Sbjct: 277 CEPDLVSSTAL-ISGYSMDRNYSD-----DAMKLFCKIHRKGLRIDAILLSSLLGVCANV 330
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+FG +HA + + DL +NAL++MYA+S
Sbjct: 331 ASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKS 365
>gi|356507282|ref|XP_003522397.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Glycine max]
Length = 279
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKS 76
K+ +AKQLHA + KT F ++++ +Y N + + + D KTP V W S
Sbjct: 17 KSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDIKSAHHVFD--KTPNRSVYLWNS 74
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+IR Q+ + +++ F M+G + PD + + V+++C DF VH + G
Sbjct: 75 MIRAFAQSQRFLSAISLFRTMLGDDISPDDHTYACVIRACADNFDFGMLRRVHGGAVAAG 134
Query: 137 VDLDLYTNNALMNMYAQ 153
+++D +AL+ Y++
Sbjct: 135 LEMDPICCSALVAAYSK 151
>gi|255541646|ref|XP_002511887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549067|gb|EEF50556.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH + K + + S L+ +Y L ++ C+ D + V W ++ C
Sbjct: 139 GRQLHCLVVKLGFQLNCLVNSALVDLYGKCGLATEARCVFDDVMYK-DLVLWNVMLSCYA 197
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
N L E+LT F M + D F S+L SC L + G +H I +L DLD+
Sbjct: 198 LNSLAEEALTVFKLMQLENLIGDGFTFSSMLNSCATLGSWELGRQIHGLICKLSFDLDIL 257
Query: 143 TNNALMNMYAQSQNMD 158
+ ++NMYA+++ ++
Sbjct: 258 VASGIVNMYAKNEYIE 273
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 29/220 (13%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + ++ + +Q+H I K + S ++ +Y + D+ D +
Sbjct: 223 TFSSMLNSCATLGSWELGRQIHGLICKLSFDLDILVASGIVNMYAKNEYIEDARKAFDCM 282
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T V+W +++ + G E++ M+ PD S+L SC +
Sbjct: 283 -TAKNVVSWNTMVVAYGRQGDGKEAMKLLKEMLLEDFAPDELTLASILSSCGSVSASCEI 341
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
VH +++ G+ L NA++N Y++ GR AS + + +
Sbjct: 342 MQVHVYVVKFGLQSFLSIGNAMINAYSKC------------------GRAASALKSFNSV 383
Query: 186 PERN--GNVELSSGLA-------GCNKFEKRVVSAGHDAD 216
PE N L SG A G FEK ++SAG D
Sbjct: 384 PEPNLVTWTSLISGYAFNSLPKDGIKMFEK-MLSAGVRPD 422
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA + K N L +++L +Y D+ L D + T V W ++I
Sbjct: 35 QVHAHLVKLGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEM-TVRNVVTWNTVICGLVNC 93
Query: 85 G-----LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
G L + F +M+ V D + ++C L G +H +++LG L
Sbjct: 94 GNNYKPCLYTGFSYFKKMLLDEVGFDPITLNVLFRACLELNGIEIGRQLHCLVVKLGFQL 153
Query: 140 DLYTNNALMNMYAQ 153
+ N+AL+++Y +
Sbjct: 154 NCLVNSALVDLYGK 167
>gi|255565583|ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536869|gb|EEF38507.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 661
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ L + +I K Q+H + K + F+ + L+ +Y+ +V ++ + D +
Sbjct: 202 TVLGALADSKAIADK--GVQIHTMVIKNGFEATIFVCNSLINMYSKSGMVKNAKAVFDNM 259
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W S++ NGL +E++ F + +GV + +F SV+KSC + + F
Sbjct: 260 VTR-DAISWNSMVAGYVANGLYLEAIEMFYHLRLAGVKLTNFIFSSVIKSCANIKELGFA 318
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173
+H +++ G + D ALM Y + + +D D F+ F G
Sbjct: 319 RQLHGQVLKGGFEYDHNIRTALMVAYNKGREID----DAFKIFSMMYG 362
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+++K+ +IK A+QLH Q+ K + + L+ YN + D+ + +
Sbjct: 304 SVIKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALMVAYNKGREIDDAFKIFSMMYGI 363
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W +II QNGL +++ F M GV P+ F ++L + ++ F V
Sbjct: 364 RNVVSWTAIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAAQPVVSPFE----V 419
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
HA +I+ + AL++ Y + N++
Sbjct: 420 HAQVIKSDYEKSPSVGTALLDAYVKLGNLN 449
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T TL +LK + K Q+H K+ + + L+ +Y V +
Sbjct: 93 LTDGSTLSCVLKACACLSCKKFGIQVHDYCVKSGFLEDISVGTSLVDMYMKSEYVEEGKR 152
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D ++ V+W S++ NGL +E+L CF M + P+ F +VL + L
Sbjct: 153 VFDEME-ERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGAIKPNPFTFATVLGA---LA 208
Query: 121 DFRF----GESVHACIIRLGVDLDLYTNNALMNMYAQS 154
D + G +H +I+ G + ++ N+L+NMY++S
Sbjct: 209 DSKAIADKGVQIHTMVIKNGFEATIFVCNSLINMYSKS 246
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++HAQ+ K+ S + + LL Y ++++ + + + VAW +++ Q
Sbjct: 418 EVHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVFERIDDK-DIVAWSAMVAGYAQT 476
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL-LVDFRFGESVHACIIRLGVDLDLYT 143
G ++ ++M GV P+ F SV+ +CT G+ HA I+ + L
Sbjct: 477 GDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIKSRFNDALCV 536
Query: 144 NNALMNMYAQSQNMD 158
++AL+ MYA+ ++
Sbjct: 537 SSALVTMYAKRGEIE 551
>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
Length = 794
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP----VAWKS 76
++ HA K L+ + RF + LL +Y LV D+ L ++ P V W +
Sbjct: 180 GREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNT 239
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ Q+G E++ M+ GV PD F S L +C+ L G +HA +++
Sbjct: 240 MVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLK-- 297
Query: 137 VDLDLYTN----NALMNMYAQSQNM 157
D DL N +AL++MYA + +
Sbjct: 298 -DADLAANSFVASALVDMYASHERV 321
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 21 SQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSI 77
S +++HA + K L NS F+ S L+ +Y + V + + D + + W ++
Sbjct: 286 SLGREMHAYVLKDADLAANS-FVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAM 344
Query: 78 IRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
I Q GL ++L F RM +GV P VL SC F E+VH +++ G
Sbjct: 345 ICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRG 404
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+ + + NALM++YA+ +MD
Sbjct: 405 MADNPFVQNALMDLYARLGDMD 426
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 37/205 (18%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T+ +L + +T + + +H + K ++ F+ + L+ +Y + + +
Sbjct: 373 SETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIF 432
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG------------------VYP 104
T++ P V+W ++I C G + ++ M G V P
Sbjct: 433 ATIE-PRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVP 491
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
++ ++L C +L G+ +H +R +D D+ +AL++MYA+
Sbjct: 492 NNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKC---------- 541
Query: 165 FQGFGFNGGREASVHEVLDKIPERN 189
G A V D++P RN
Sbjct: 542 --------GCLALSRAVFDRLPRRN 558
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K+ + Q+HA +++ + L +L Y++ ++ SL L + + P + SI
Sbjct: 45 KSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNPNV-FFYTSI 103
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I T + L ++L + +M+ V P+ F S+LKSC L F + +HA I+ G+
Sbjct: 104 IHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSSILKSCPL----EFAQIIHAQAIKFGL 159
Query: 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
D DLY L+++YA+ GG S + D+IPE++
Sbjct: 160 DSDLYVRTCLVDVYAR------------------GGDFVSARNLFDEIPEKS 193
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113
+V ++ L D L+ V W +I Q+GL E L F +M+ V P +VL
Sbjct: 209 MVKEARVLFDGLED-RDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTVLAVL 267
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+C + G VH+ I G++++ + +AL++MY++ N++
Sbjct: 268 SACGQIGALESGRWVHSYIQNNGIEINAHVGSALIDMYSKCGNLE 312
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 20/223 (8%)
Query: 3 STKTL-INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S++TL I+LL+N + + +Q+HAQI KT P S ++R+ + H + +
Sbjct: 26 SSETLKIDLLRN---FNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQI 82
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
++ P W S ++ + ++++ F R+ V PD SVL++C L+
Sbjct: 83 FKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLL 142
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-------------DMHIYDRFQG 167
D G +H + ++G +LY N ++++YA M D+ ++
Sbjct: 143 DLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
Query: 168 FGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNKFEKRV 208
G +++ ++PERN + +G C K ++ +
Sbjct: 203 QLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAPP 71
+ I + SQA QLHAQI K+ +P + LF + + D + +L++L T
Sbjct: 1 MEITSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSF 60
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI--GSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
++IR +Q ++L F+ M+ + PD +P +LKSC L R G+ +H
Sbjct: 61 FH-NTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLH 119
Query: 130 ACIIRLGVDLDLYTNNALMNMYA 152
I + G++ D Y +N L++MY+
Sbjct: 120 GLIYKSGLESDRYVSNGLIHMYS 142
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK+ +K KQLH I+K+ + R++ + L+ +Y++ + + ++
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRD-R 160
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + +E++ F M+ GV P+ SVL++C G V
Sbjct: 161 DVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQ 220
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
I + L+ AL++MYA+
Sbjct: 221 GVIEERKIGLEANVRTALIDMYAK 244
>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +HAQ K E FL + L+ Y LV D+ + L P V++ ++I +
Sbjct: 116 ARAVHAQFLKLEE--DIFLGNALISAYLKLGLVRDADKVFSGLSCPNV-VSYTALISGFS 172
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++ E++ F M+ SG+ P+ F ++L +C +D++ G VH +++LG+ ++
Sbjct: 173 KSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVF 232
Query: 143 TNNALMNMYAQSQNMDM 159
NALM +Y + +D+
Sbjct: 233 ICNALMGLYCKCGFLDL 249
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+++ +++ ++N +L F+ M+ GV S++ +C LL F+ + +
Sbjct: 396 ISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGF 455
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G+ + AL++MY + M+
Sbjct: 456 VMKFGILSNSCIETALVDMYTRCGRME 482
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 23 AKQLHAQIFKTLEPNSRFLI--SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q+HA + K N R LI S ++ Y + + C ++ V W S+I
Sbjct: 86 GRQIHACVVK---GNWRNLIVDSAIVSFYAQCGDLESAFCAFFQVREK-DVVCWTSVISA 141
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C+Q G E+ F +M+G G P+ ++LK+C +FG +H I++ D
Sbjct: 142 CSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKGMYKDD 201
Query: 141 LYTNNALMNMYAQSQNM 157
++ +L++MYA+ M
Sbjct: 202 VFIGTSLVDMYAKCGEM 218
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLL 62
T++++L+ SI +++HAQI K+ ++ +L S L++ Y FN+ L +
Sbjct: 270 TVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQM 329
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ V+W ++I G E+L M+ GV P+ + S LK+C L
Sbjct: 330 ----SFRNVVSWTAMISGYIGLGYEFEALEFLKEMMDEGVEPNEFTYSSALKACANLESV 385
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G+ +H+ + ++Y +AL+ MY++ G + +V
Sbjct: 386 LQGKLIHSFANKTPASSNVYVGSALIYMYSKC------------------GYLSDAIQVF 427
Query: 183 DKIPERN 189
D +PERN
Sbjct: 428 DSMPERN 434
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I GL E+L F +I +GV ++ F +L C+ +DF G +HAC
Sbjct: 33 VSWTAMINGYVSFGLDDEALRLFSELIENGVTANNRTFVCILNVCSKRLDFELGRQIHAC 92
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
+++ G +L ++A+++ YAQ +++ FQ
Sbjct: 93 VVK-GNWRNLIVDSAIVSFYAQCGDLESAFCAFFQ 126
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LK ++++ Q K +H+ KT ++ ++ S L+++Y+ + D++ + D++
Sbjct: 371 TYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIYMYSKCGYLSDAIQVFDSM 430
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
++WK++I +NGL E+L RM G+ D ++ SV+ SC
Sbjct: 431 -PERNLISWKTMILSYARNGLCREALKLMYRMQAEGIEVDDYIYASVMGSC 480
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LK K +QLH I K + + F+ + L+ +Y + DS + D +
Sbjct: 169 TVCAILKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGM 228
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W SII + GL E++ F M + ++ SVL++C + G
Sbjct: 229 R-KRNTVTWTSIIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTG 287
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VHA II+ G+ ++Y + L+ Y +
Sbjct: 288 REVHAQIIKSGIQSNVYLGSTLVWFYCK 315
>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +HAQ K E FL + L+ Y LV D+ + L P V++ ++I +
Sbjct: 116 ARAVHAQFLKLEE--DIFLGNALISAYLKLGLVRDADKVFSGLSCPNV-VSYTALISGFS 172
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++ E++ F M+ SG+ P+ F ++L +C +D++ G VH +++LG+ ++
Sbjct: 173 KSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVF 232
Query: 143 TNNALMNMYAQSQNMDM 159
NALM +Y + +D+
Sbjct: 233 ICNALMGLYCKCGFLDL 249
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+++ +++ ++N +L F+ M+ GV S++ +C LL F+ + +
Sbjct: 396 ISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGF 455
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G+ + AL++MY + M+
Sbjct: 456 VMKFGILSNSCIETALVDMYTRCGRME 482
>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 525
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I +G+ +++L CFV M G PD + F L SC ++ + G +H
Sbjct: 382 VSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQLHHL 441
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ G DL+ NAL+ MYA+
Sbjct: 442 VIKSGYINDLFVCNALITMYAK 463
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH + K+ N F+ + L+ +Y + ++ + + A V+W S+I
Sbjct: 435 GRQLHHLVIKSGYINDLFVCNALITMYAKCGKILEAKLVFKGI-CNADVVSWNSLIGGYA 493
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112
NG E+LT F M +GV PD F V
Sbjct: 494 LNGCGEEALTLFEEMKLAGVVPDQVTFIGV 523
>gi|147852318|emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
Length = 734
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y + + D+ + D + + ++W I R +NG E L F +M GV PD
Sbjct: 310 MYIDCGSIKDARAVFDRMPSK-DVISWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSL 368
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
S+L +C + G+ +HA ++R G+DL++ NA+++MY +S
Sbjct: 369 AISSILPACGRGAAHKQGKEIHAYLLRNGIDLNVTVQNAVLDMYVKS 415
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110
+F L H L D + + AW ++I+ NG ++ + +M+ GV PD + P
Sbjct: 137 DFGLTHQ---LFDEIPV-SNTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIP 192
Query: 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+L + F FG+ VH ++LG+ + Y +AL+ MY + B
Sbjct: 193 RILTAARHTSSFSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGAB 240
>gi|357153150|ref|XP_003576355.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Brachypodium distachyon]
Length = 617
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+A Q+H+ I K+ FL + LL +Y V + L + + V+W ++I
Sbjct: 248 EAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEAMPEK-DVVSWTALISGL 306
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+G ++ F RM G+ P+ F SV+ SC + D G HA +I+ G++
Sbjct: 307 VASGHQADAFKTFCRMQGAATVPNSFTFGSVVSSCACVNDLGGGRQCHALVIKHGLESIP 366
Query: 142 YTNNALMNMYAQSQNMD 158
++L++MY++ MD
Sbjct: 367 TVASSLLDMYSKCAEMD 383
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A Q+HA+ K + + + +Y+ L+ D+ + + + VAW ++ C
Sbjct: 148 AWQVHARALKAGAFADACVGTGFVRLYSGLGLIGDARKVFEGMPE-RDLVAWNVLLDCGM 206
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++G L V MIG V PD F +V+ VH+ I++ G DL+
Sbjct: 207 RSGEAGSCLQDLVLMIGGRVQPDEFTFATVVNGLAERFAGLEAMQVHSVILKSGHLKDLF 266
Query: 143 TNNALMNMYAQSQNMDM 159
N+L+N+Y + +D+
Sbjct: 267 LCNSLLNVYGRCGYVDL 283
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q K H + K+ S L++ LL +Y + ++ + + + V W ++I
Sbjct: 272 QGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE-HSHVDLVMWTAMIVGY 330
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
T NG + E+L+ F +M G G+ P+ SVL C L+ + G S+H I++G+ D
Sbjct: 331 THNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDT 389
Query: 142 YTNNALMNMYAQS-QNMDM-HIYDR------------FQGFGFNGGREASVHEVL 182
NAL++MYA+ QN D ++++ GF NG S+HE L
Sbjct: 390 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNG----SIHEAL 440
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LK ++ K++H QI K P+ +++ LL +Y + S + + + T
Sbjct: 161 LKACTEVQDLDNGKKIHCQIVKV--PSFDNVVLTGLLDMYAKCGEIKSSYKVFEDI-TLR 217
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W S+I +N L E L F RM + V + + +++ +CT L G+ H
Sbjct: 218 NVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFH 277
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQ 153
C+I+ G++L +L++MY +
Sbjct: 278 GCLIKSGIELSSCLVTSLLDMYVK 301
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+++ VAW SII +QNG + E+L F RM V P+ S+ +C L
Sbjct: 414 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAI 473
Query: 125 GESVHACIIRLG--VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G S+HA ++LG ++ AL++ YA+ G S +
Sbjct: 474 GSSLHAYSVKLGFLASSSVHVGTALLDFYAKC------------------GDAESARLIF 515
Query: 183 DKIPERNGNVELSSGLAGCNK 203
D I E+N + S+ + G K
Sbjct: 516 DTIEEKN-TITWSAMIGGYGK 535
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
+ ++L+ +Y +F D+ + D + P + WK I+RC N E + + ++
Sbjct: 90 IATKLVSLYGSFGYTKDARLVFDQIPEPDFYL-WKVILRCYCLNNESFEVIKFYDLLMKH 148
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G D VF LK+CT + D G+ +H I+++ D L++MYA+
Sbjct: 149 GFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVLTGLLDMYAK 200
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SI+ CC QNG +E++ F M G+ P+ P VL + + G S H
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCF 317
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+R G D+Y +AL++MYA+
Sbjct: 318 SLRKGFHHDIYVGSALVDMYAK 339
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++ ++G +++ VRM G G PD L + + D GE +H
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGY 181
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G LD AL++MY + D
Sbjct: 182 VVKAGCRLDACVATALIDMYGKCGRAD 208
>gi|2832657|emb|CAA16732.1| putative protein [Arabidopsis thaliana]
gi|7268645|emb|CAB78854.1| putative protein [Arabidopsis thaliana]
Length = 565
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N + S L++ Y + +L D ++ ++W ++I C+
Sbjct: 184 GRQVHGNMVKVGVGN-LIVESSLVYFYAQCGELTSALRAFDMMEEK-DVISWTAVISACS 241
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G ++++ F+ M+ P+ S+LK+C+ RFG VH+ +++ + D++
Sbjct: 242 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVF 301
Query: 143 TNNALMNMYAQ 153
+LM+MYA+
Sbjct: 302 VGTSLMDMYAK 312
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
+LHAQI K + ++ S L+++Y D+ +L L + V+W ++I C+
Sbjct: 370 ELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSR-DVVSWTAMISGCSSL 428
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E+L MI GV P+ + S LK+C G S+H+ + N
Sbjct: 429 GHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKK---------N 479
Query: 145 NALMNMYAQS 154
+AL N++ S
Sbjct: 480 HALSNVFVGS 489
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W ++I + GL E+ F + G+ + + +F +L C+ +F G VH
Sbjct: 130 VTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHG 189
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++++GV +L ++L+ YAQ
Sbjct: 190 NMVKVGVG-NLIVESSLVYFYAQ 211
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL+ S+ + +KQ+H +FK F S L+ +Y+N + DS + D +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEM 515
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V W S+ Q E+L F+ + S PD F ++ + L + G
Sbjct: 516 KVK-DLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG 574
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ H +++ G++ + Y NAL++MYA+
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAK 602
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA I + L++ L+ Y V + L D + ++W +++
Sbjct: 268 GKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNK-NIISWTTLLSGYK 326
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN L E++ F M G+ PD S+L SC L FG VHA I+ + D Y
Sbjct: 327 QNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSY 386
Query: 143 TNNALMNMYAQ 153
N+L++MYA+
Sbjct: 387 VTNSLIDMYAK 397
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I C + G SL F +++ V PD + +VL +C++L G+ +HA
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAH 274
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+R G + D N L++ Y + GR + H++ D +P +N
Sbjct: 275 ILRYGHEKDASLMNVLIDSYVKC------------------GRVRAAHKLFDGMPNKN 314
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 82/198 (41%), Gaps = 19/198 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++++ ++ + ++ H Q+ K + ++ + LL +Y D+ D+
Sbjct: 557 TFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSA 616
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I +G ++L +M+ G+ P++ F VL +C+ G
Sbjct: 617 AS-RDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDG 675
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
++R G++ + ++++ ++ GR E+++K+
Sbjct: 676 LKQFELMLRFGIEPETEHYVCMVSLLGRA------------------GRLNEARELIEKM 717
Query: 186 PERNGNVELSSGLAGCNK 203
P + + S L+GC K
Sbjct: 718 PTKPAAIVWRSLLSGCAK 735
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 19/75 (25%)
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH II G++LD Y +N LMN+Y+++ M +Y R +V +K+PE
Sbjct: 66 VHGQIIVSGLELDTYLSNILMNLYSRAGGM---VYAR---------------KVFEKMPE 107
Query: 188 RNGNVELSSGLAGCN 202
RN V S+ ++ CN
Sbjct: 108 RN-LVTWSTMVSACN 121
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL----LDTLKTPAPPV-A 73
T SQ KQ+HAQ+ +T F S+++ F +HDS L L + P P
Sbjct: 52 TMSQLKQIHAQMLRTCLFVDPFSASKIV----AFCALHDSGSLPYARLVFNQIPNPTTFT 107
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
SIIR T L +++ + M+ G+ PD FPS+ KSC +L + G+ +H
Sbjct: 108 CNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHST 164
Query: 134 RLGVDLDLYTNNALMNMYA 152
+LG D Y N LMNMY+
Sbjct: 165 KLGFASDAYIQNTLMNMYS 183
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 23/201 (11%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+N+L + AKQ+H I +T L S L+ +Y + L +
Sbjct: 240 TLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFN-- 297
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P + W +I ++ E+L+ F M SGV D S+L +CT L
Sbjct: 298 KMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALEL 357
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H I + +++D+ AL++MYA+ +++ S V +
Sbjct: 358 GKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE------------------SAMRVFQE 399
Query: 185 IPERN--GNVELSSGLAGCNK 203
+PE++ L GLA C +
Sbjct: 400 MPEKDVMTWTALIVGLAMCGQ 420
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQLH K + ++ + L+ +Y+N + + + D + + V+W ++I
Sbjct: 155 EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV-VSWATMIGAY 213
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q L E++ F RM + V P+ +VL +C D + VH I G+
Sbjct: 214 AQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273
Query: 142 YTNNALMNMYAQ 153
+ALM++Y +
Sbjct: 274 VLTSALMDVYCK 285
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
L+ V K+ ++ K++H + +L + L+ +Y+ + D+ + ++
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDK-D 165
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I +G E+ F +M G+ P+ N F S+L +C + FGE +H+
Sbjct: 166 VVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHS 225
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
I + G + D+ + AL+NMY + ++++
Sbjct: 226 RIAKAGYESDVNVSTALINMYCKCGSLEL 254
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K+LH+QI T + + L+ +Y ++ + + + ++W + I CC
Sbjct: 420 RGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQM-PERNVISWNAFISCC 478
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++ L E+ F +M V PDH F ++L SCT D G +H I + G+ +
Sbjct: 479 CRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNN 538
Query: 142 YTNNALMNMYAQSQNM 157
+ NAL++MY + N+
Sbjct: 539 HVANALISMYGRCGNL 554
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++++ ++P++++ +Q+H++I K + + + L+ +Y + + + + +
Sbjct: 206 SILSACQSPIALEF---GEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEM 262
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I Q+G E+L F ++I SG+ P+ F S+L +CT D G
Sbjct: 263 R-ERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEG 321
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+HA I + G++ ++ NAL++MY++
Sbjct: 322 LKLHAYIKQAGLEQEVLVGNALISMYSR 349
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T IN+L+ +++ + +H + K +++ L+ +Y+ + D+ + T+
Sbjct: 606 TFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTV 665
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +++ + ++L F +M GV PD + + + L +C L G
Sbjct: 666 QEK-DVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHG 724
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA + G++ D +N+L+ MY++
Sbjct: 725 KKIHAQLKEAGMETDTRVSNSLIEMYSR 752
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
+LHA I + + + L+ +Y+ + ++ + D L++ W ++I +
Sbjct: 323 KLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRS-LNRTTWNAMIAGYGE- 380
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GL+ E+ F M G PD + S+L C D G+ +H+ I G DL
Sbjct: 381 GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVA 440
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
AL++MYA+ G +V +++PERN
Sbjct: 441 TALISMYAKC------------------GSPEEARKVFNQMPERN 467
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN---------------- 50
LINLL++ ++ K+ S AK +HA+IF+ + FL + L+ +Y+
Sbjct: 8 LINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIP 67
Query: 51 -----NFNLVHDSLCLLDTLKTPAP---------PVAWKSIIRCCTQNGLLVESLTCF-V 95
++N + + C + L+ V+ +II +NG ++L + +
Sbjct: 68 HKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDL 127
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
M+ V P H F +V +C L D G H ++++G D ++Y +NAL+ MY +
Sbjct: 128 MMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTK 185
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + + KQ+HA K + ++ S L+ +Y+ + S + L
Sbjct: 420 TLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKL 479
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W S+I + N L ++L CF RM G +P F ++ SC L G
Sbjct: 480 -SELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQG 538
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY--------------DRFQGFGFN 171
+ +HA II+ G +++ ++L+ MY + ++ Y + G+ N
Sbjct: 539 QQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHN 598
Query: 172 G-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
G G EA S+++ + E+ ++ + L C+
Sbjct: 599 GYGLEAVSLYKDMISSGEKPDDITFVAVLTACS 631
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + +P+ ++W +I+ Q+ E++ F +M PD +L SC L
Sbjct: 374 IFDCMSSPSL-ISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELG 432
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
G+ VHA +LG D+Y ++L+N+Y++ M++ H++ +
Sbjct: 433 LLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKL 479
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++ H + K ++ ++ + LL +Y L D+ + + + P V + +++ +
Sbjct: 157 GRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEP-NEVTFTTMMGGLS 215
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF------------GESVHA 130
Q + E L F M+ G+ D ++L C V F G+ +H
Sbjct: 216 QTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHT 275
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ G + DL+ N+L++MYA++ +MD
Sbjct: 276 LAVKHGFERDLHLCNSLLDMYAKTGDMD 303
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ T +Q KQ+H K L + LL +Y + + + + L + V+W
Sbjct: 264 LSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSV-VSWNI 322
Query: 77 II-----RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+I RC ++ ++L CF RM G PD + ++L +C D + G + C
Sbjct: 323 MISGYGNRCDSE-----KALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDC 377
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQN 156
+ L + NA+++ Y QS +
Sbjct: 378 M----SSPSLISWNAILSGYNQSAD 398
>gi|338858428|dbj|BAK42624.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858430|dbj|BAK42625.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858432|dbj|BAK42626.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858434|dbj|BAK42627.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858436|dbj|BAK42628.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858438|dbj|BAK42629.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858440|dbj|BAK42630.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858442|dbj|BAK42631.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858444|dbj|BAK42632.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858446|dbj|BAK42633.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858448|dbj|BAK42634.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858450|dbj|BAK42635.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858452|dbj|BAK42636.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858454|dbj|BAK42637.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858456|dbj|BAK42638.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858458|dbj|BAK42639.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858460|dbj|BAK42640.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858462|dbj|BAK42641.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858464|dbj|BAK42642.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858466|dbj|BAK42643.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858468|dbj|BAK42644.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858470|dbj|BAK42645.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858472|dbj|BAK42646.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858474|dbj|BAK42647.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858476|dbj|BAK42648.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858478|dbj|BAK42649.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
gi|338858480|dbj|BAK42650.1| AT2G36980 [Arabidopsis halleri subsp. gemmifera]
Length = 206
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I +NG ++L+ FV M+ SGV DH + +VL +C+ L G+ +H C
Sbjct: 101 VTWTTMIAGYGRNGDGEQALSFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGC 160
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I G Y NAL+N+YA+
Sbjct: 161 LIHFGFQGYAYVGNALVNLYAK 182
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN--NFNLVHDSLCLLDTLKTPA 69
KN +S T +K+LHA + +T FL+S ++ Y+ + NL H + + + ++ P
Sbjct: 25 KNSISTDT---SKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNL-HKAHLVFNQIECPT 80
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W +IR +Q+ VE++ + RM G+ ++ + K+C + D G +H
Sbjct: 81 L-VVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIH 139
Query: 130 ACIIRLGVDLDLYTNNALMNMYA 152
++LG + L+ +NAL++MYA
Sbjct: 140 VHALKLGFESYLFVSNALIHMYA 162
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S+I +Q +++ F M+ + V PD SVL +C L G +VH
Sbjct: 315 ISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHY 374
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I R GV D+Y N+L++MY +
Sbjct: 375 IRRHGVQADIYVGNSLIDMYCK 396
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 83/197 (42%), Gaps = 14/197 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI L K + +++H K + F+ + L+ +Y + + + D +
Sbjct: 118 TLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGM 177
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I +Q E L F M + + D ++ +C+ L D+ F
Sbjct: 178 -LDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 236
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRFQG---FGFNG-------- 172
+S+ I +++D+Y N L++MY + + ++DR + +N
Sbjct: 237 DSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKV 296
Query: 173 GREASVHEVLDKIPERN 189
G + ++ D +P+R+
Sbjct: 297 GNLTAARKLFDNMPKRD 313
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y +V +L + +K V+W S+I NG +L F +M+ GV P
Sbjct: 390 LIDMYCKCGMVEKALEVFHRMKDK-DSVSWTSVISGLAVNGFANSALDLFSQMLREGVQP 448
Query: 105 DHNVFPSVLKSCTL-------LVDFRFGESVHACI 132
H F +L +C L F ESVH +
Sbjct: 449 THGTFVGILLACAHAGLVNKGLEYFESMESVHGLV 483
>gi|357154306|ref|XP_003576739.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Brachypodium distachyon]
Length = 620
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVH-DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLL 87
+IF+++E SR ++S I L H + +L + ++W ++I +NG
Sbjct: 256 EIFESME--SRTIVSWNSLIDAYMRLGHIEQAAVLFRIAPATNAISWTAMIGGFARNGSA 313
Query: 88 VESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146
E+L FV+M+ ++PD F +VL +C G +H C R G LY N+
Sbjct: 314 DEALALFVKMLTQDDIHPDSFTFGAVLHACATASSLASGRMIHGCAFRTGYASYLYVANS 373
Query: 147 LMNMYAQSQNMD 158
LM+MYA+ +++
Sbjct: 374 LMDMYAKCGDVE 385
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I ++G VESL FV+M GV PD F SVL +C+ L D FG+ +H
Sbjct: 225 VSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-- 282
Query: 132 IIRLGVDL---DLYTNNALMNMYAQSQNMD 158
L DL ++ AL MYAQ ++D
Sbjct: 283 --YLSGDLSQSEVMVGTALTEMYAQCGDVD 310
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ A V W ++IR NG E + F M G+ P + +P V+ SC L + G+
Sbjct: 15 SSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGK 74
Query: 127 SVHACIIRLGVDLDLYTNNALMNMY-----------AQSQNMD-------------MHIY 162
VH I++ G + N+L NMY A + +D + ++
Sbjct: 75 RVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELW 134
Query: 163 DRFQGFGFNGGREASVHEVLDKIPERN 189
++ G N G S E+ D +PER+
Sbjct: 135 NQMIGKYVNIGDVKSARELFDIMPERD 161
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T + L + ++ + KQ+ I + + + ++ L+ +Y+ V ++ + D
Sbjct: 57 SRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFD 116
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+++ V W ++I Q G + E+ F +M+ G+ P F SVL +C+
Sbjct: 117 SVENKTV-VTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+G+ VHA ++ G D AL++MY + +MD
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMD 210
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +++L + + + K +HAQ + + + L+ +Y + + + D +
Sbjct: 261 SFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNM 320
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W +I +NG + ++ F M G+ PD + ++ +C + +
Sbjct: 321 KVR-DVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA 379
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+H+ + G DL + AL++MYA+
Sbjct: 380 REIHSQVDIAGFGTDLLVSTALVHMYAK 407
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ A+++H+Q+ + + L+ +Y + D+ + D + V+W ++I
Sbjct: 377 NHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRR-DVVSWSAMIGA 435
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+NG E+ F M S + PD + ++L +C L G ++ I+ +
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495
Query: 141 LYTNNALMNMYAQSQNMDMHIY 162
+ NAL+ M A+ +++ Y
Sbjct: 496 VPLGNALIIMNAKHGSVERARY 517
>gi|413946975|gb|AFW79624.1| hypothetical protein ZEAMMB73_151372 [Zea mays]
Length = 676
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 41 LISRLLFIYNNFNLVHDSLCLL-DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
+++RL+++Y + S LL ++ + VAW ++I+ C + GL+ +++ ++M
Sbjct: 362 VVTRLIYMYAKCGQLGSSETLLHESTEVRCDVVAWNALIKACGELGLVEKAIGFAIQMHR 421
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+G+YPD+ F +L +L+ + G VHA I++ G + N+L+ MY + ++ +
Sbjct: 422 TGIYPDNVTFLEILHMISLIPSLKKGMEVHAHIVKRGFQNERAIANSLIYMYGRCGSLSL 481
Query: 160 HIYDRFQGF 168
+ + F G
Sbjct: 482 SV-NAFTGI 489
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
VAW ++I + G L E++ F M + G P S++ + ++ +HA
Sbjct: 185 VAWNAVIGGYARAGHLSEAVELFGMMRSAVGACPTEATLVSLVSGYAVFGSWKGHGMMHA 244
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ G L+ +NAL+ MY +
Sbjct: 245 AVIKSGFQRSLFVSNALLEMYTE 267
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+HA I K+ ++ S L+ +Y+ +V + D + V+W S+I C QN
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR-NIVSWNSLITCYEQN 230
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDLYT 143
G ++L FV M+ +GV PD SV+ +C R G +HA ++ R DL
Sbjct: 231 GPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVL 290
Query: 144 NNALMNMYAQSQNMDMH--IYDR 164
NAL++MYA+ + ++ ++DR
Sbjct: 291 GNALVDMYAKCRRVNEARLVFDR 313
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--- 65
LL + V K+ A+++HA+I KT + F+ +RL+ Y D+ + D +
Sbjct: 24 KLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQR 83
Query: 66 --------------------------KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMI 98
P P +W +++ Q+ E+L FV M
Sbjct: 84 NTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH 143
Query: 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ F S L +C L D G +HA I + LD+Y +AL++MY++
Sbjct: 144 SEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSK 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E++ F+ + ++P H F ++L +C L D + G H
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQ 410
Query: 132 IIRLGV------DLDLYTNNALMNMYAQ 153
I++ G + D++ N+L++MY +
Sbjct: 411 ILKHGFWFQSGEESDIFVGNSLIDMYMK 438
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T NLL ++ +Q H QI F++ E + F+ + L+ +Y +V D
Sbjct: 387 TFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDG- 445
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
CL+ V+W ++I QNG +L F +M+ SG PDH VL +C+
Sbjct: 446 CLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACS 503
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+++HA ++L+ F+ + L+ Y F+ V D+ + D + + V+W +++ +
Sbjct: 100 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSV-VSWTAMMNVYLK 158
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G E + F M+GSGV + F +LKSC D + G+ VH CI++ G ++
Sbjct: 159 LGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIV 217
Query: 144 NNALMNMYAQ 153
++A+ + YAQ
Sbjct: 218 DSAIAHFYAQ 227
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++ LL S+++ K+LHAQI K + + S L++ Y + +L+ +
Sbjct: 384 TIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAM 443
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I G VE+L M+ GV P+ + S LK+C L ++G
Sbjct: 444 PD-RDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYG 502
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+H + + +++ ++L++MY + +D V D +
Sbjct: 503 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVD------------------EARSVFDAM 544
Query: 186 PERN 189
PE N
Sbjct: 545 PEHN 548
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I Q+G ++L F M+ G P+ SVLK+C RFG+ +H
Sbjct: 247 ISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCA 306
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
+++ D++ +AL+ MYA+ G V D +P RN
Sbjct: 307 VLKKMYKNDIHIGSALVTMYARC------------------GEVFDAQAVFDMMPRRNTI 348
Query: 192 VELS--SGLAGCNKFEKRVV 209
S SG A EK ++
Sbjct: 349 TWTSMISGYAQSGHGEKAIL 368
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K KQLH + K + N + S L+ +Y V D+ + D +
Sbjct: 283 TVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMM 342
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W S+I Q+G +++ F +M V+ ++ +L +C L G
Sbjct: 343 PR-RNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLG 401
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ +HA II+ ++ +L + L+ Y +
Sbjct: 402 KELHAQIIKNSMEENLQIGSTLVWFYCK 429
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T + LK ++ +++H + KT + ++ F+ S L+ +Y V ++ + D
Sbjct: 483 TYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFD 542
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ V WK II QNGL E+L M G D V +VL SC
Sbjct: 543 AMPE-HNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSC 594
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ T IN++ + + + +++HA+I + + + L+ +Y H++ + D
Sbjct: 207 STTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFD 266
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+K V+W +I C QNG E+L + ++ G F S+L +C+ +
Sbjct: 267 KMKKR-DMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH+ I+ G+D ++ AL+NMYA+ +++
Sbjct: 326 QGRLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L + S ++ + LH +I + + + L+ +Y + + D+ + +++
Sbjct: 9 TFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V+W ++I QNG E+L + RM G+ DH F SVL +C+ L
Sbjct: 69 DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ--- 125
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H + G+D NAL+ MYA+
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYAR 154
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W ++I QNG V ++ F M G+ G+ PD F +VL++C L +++HA
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
I ++ ++ N L+NMYA+ +++
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLE 496
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I +L+ S+ S+ K LHAQI ++ ++ + + L+ +Y + ++ L
Sbjct: 446 TFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
K V+W +++ +Q G E+L F M GV PD + S+L CT
Sbjct: 506 KEK-TVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCT 556
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ S T + LLK S+ +Q KQ+HAQ+ + L+ L+ Y + +
Sbjct: 52 LPSHSTFVQLLKKRPSL---TQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARI 108
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLKSCTL 118
+ D + P + W +I+ ++ ESL F +M+ G D F V +C+
Sbjct: 109 VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSR 168
Query: 119 LVDFR-FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF---------- 165
R +GE+VH +++ G + D++ N+L+NMY+ M ++D
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228
Query: 166 --QGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200
+G+ G E+ D +P RN +V + +AG
Sbjct: 229 VVKGYAMR-GELVRARELFDMMPGRN-DVSWAVMVAG 263
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 44/198 (22%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL------------------- 65
++HA+ K + F+ S L+ +Y D+ + DTL
Sbjct: 402 RIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNG 461
Query: 66 ----------KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
K PA +A W +II QN V++L F M+ SG P F SVL
Sbjct: 462 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLL 521
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--------------DMH 160
+C L G+ HA I+LG++ ++ AL +MYA+S ++ D+
Sbjct: 522 ACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVT 581
Query: 161 IYDRFQGFGFNGGREASV 178
QG NG E S+
Sbjct: 582 WTAMIQGLAENGFAEESI 599
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F ++ + LL +Y+ + + +LD + V+W ++I Q G
Sbjct: 305 KVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPER-NEVSWGTLIARHEQRGNAA 363
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ + +M+ G P+ + F SVL +C L D R G +HA +++G +++ +++L+
Sbjct: 364 EAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLI 423
Query: 149 NMYAQSQNM--DMHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
+MY + + I+D G+ +NG +++ + K+P RN
Sbjct: 424 DMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMY-LFKKMPARN 477
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +K + Q KQ+ A K N ++ S +L +Y + ++L L +
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI 1160
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P VAW ++I +NG +L+ + M SGV PD F +++K+ + L G
Sbjct: 1161 SRP-DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQG 1219
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +HA +++L LD + +L++MY
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMY 1245
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L V +Q+HA + K+ + + L+ +Y+ +V+ + +
Sbjct: 896 TLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--I 953
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--- 121
+P ++W ++I QN L +E++ F ++ G+ PD SVL++C+ +
Sbjct: 954 NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEY 1013
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
F G VH I+ G+ D + + AL+++Y++ MD
Sbjct: 1014 FTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMD 1050
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q KQ+HA + K F+ + L+ +Y V D+ + +
Sbjct: 1202 TFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM 1261
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W +++ Q+G + E+L F M +G+ PD F VL +C+
Sbjct: 1262 DV-RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H K N F+ + L+ +Y+ + ++ LL K +W +I+ ++
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIMFGYIKS 1077
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++L F M G+ D + +K+ L++ + G+ + A I+LG + DL+ +
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137
Query: 145 NALMNMYAQSQNM 157
+ +++MY + +M
Sbjct: 1138 SGVLDMYIKCGDM 1150
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW + G +V ++ CF ++ S + D +L + D GE +HA +
Sbjct: 861 AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920
Query: 133 IRLGVDLDLYTNNALMNMYAQS 154
I+ + +N+LMNMY+++
Sbjct: 921 IKSSFAPVVPVSNSLMNMYSKA 942
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +K + Q KQ+ A K N ++ S +L +Y + ++L L +
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI 1160
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P VAW ++I +NG +L+ + M SGV PD F +++K+ + L G
Sbjct: 1161 SRP-DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQG 1219
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+ +HA +++L LD + +L++MY
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMY 1245
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L V +Q+HA + K+ + + L+ +Y+ +V+ + +
Sbjct: 896 TLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--I 953
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--- 121
+P ++W ++I QN L +E++ F ++ G+ PD SVL++C+ +
Sbjct: 954 NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEY 1013
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
F G VH I+ G+ D + + AL+++Y++ MD
Sbjct: 1014 FTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMD 1050
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+K + Q KQ+HA + K F+ + L+ +Y V D+ + +
Sbjct: 1202 TFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM 1261
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W +++ Q+G + E+L F M +G+ PD F VL +C+
Sbjct: 1262 DV-RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H K N F+ + L+ +Y+ + ++ LL K +W +I+ ++
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIMFGYIKS 1077
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++L F M G+ D + +K+ L++ + G+ + A I+LG + DL+ +
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137
Query: 145 NALMNMYAQSQNM 157
+ +++MY + +M
Sbjct: 1138 SGVLDMYIKCGDM 1150
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW + G +V ++ CF ++ S + D +L + D GE +HA +
Sbjct: 861 AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920
Query: 133 IRLGVDLDLYTNNALMNMYAQS 154
I+ + +N+LMNMY+++
Sbjct: 921 IKSSFAPVVPVSNSLMNMYSKA 942
>gi|147805255|emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]
Length = 880
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSL 59
+ + +L +L+ V SQAKQ HAQI PN L + LL +Y+ ++ D+
Sbjct: 433 LITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNIT-LQTDLLLVYSKCGVLQDAR 491
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + +W +I N ++L F + G PDH P V K+C +
Sbjct: 492 KVFDKM-VERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGI 550
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D G+ +H+ +IR+G + + +++++ Y +
Sbjct: 551 GDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYEK 584
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 4/150 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDT 64
TL + K I K LH+ + + + S +L Y LV C ++
Sbjct: 539 TLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYEKCGGLVDAWRCFVNM 598
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V W +I + ++L CF M+ GV D PS+L C D
Sbjct: 599 --SWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMK 656
Query: 125 GESVHACIIRLGV-DLDLYTNNALMNMYAQ 153
G+ +H +++ + ++ N+L++MYA+
Sbjct: 657 GKEIHGQVVKNQIFGCEVAIGNSLIDMYAK 686
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LLK + + ++H K + F+ + L+ +Y + + D+ L D + P
Sbjct: 126 SLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHP 185
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW II QNG ++L F M S + PD + +VL +C + +G ++
Sbjct: 186 -DAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTI 244
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYD 163
H + G +D + AL+NMYA MD+ IYD
Sbjct: 245 HEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYD 281
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A L +I+ L + + +L Y +V D+ + D + V W ++I
Sbjct: 272 AMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM-IERDLVCWSAMISGYA 330
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
++ E+L F M+ PD SV+ +C+ + +H + R G L
Sbjct: 331 ESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALS 390
Query: 143 TNNALMNMYAQSQNM 157
NNAL++MYA+ N+
Sbjct: 391 VNNALIDMYAKCGNL 405
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+ LL V + A+ LH + KT F+ + L+ Y D+ L D +
Sbjct: 82 VPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPE 141
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
V W ++I T N L+E+L FV M+ +G YP H ++L +C+ + G
Sbjct: 142 KNV-VTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQ 200
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH I+ N+L MYA+S +++
Sbjct: 201 VHGYTIKYRALSITSIGNSLCRMYAKSGSLE 231
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
++L F + S + PD F S+L C+ ++ GE +HA I+ G D+ N+AL+
Sbjct: 376 QALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALV 435
Query: 149 NMY 151
NMY
Sbjct: 436 NMY 438
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ Q +Q+HAQ KT + + S L+ +YN + D+ +
Sbjct: 395 TFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEM 454
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W S+I +Q+G E++ F M +GV P+ F VL +C+
Sbjct: 455 SIRTL-VTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACS 505
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I NG E+LT + RM GV PD S+L +C L G H
Sbjct: 73 VAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVY 132
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++++G++ +L+ NNAL+++YA+
Sbjct: 133 MVKVGLNKNLHANNALLDLYAK 154
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++LL + T ++ H + K + + LL +Y + ++ + D +
Sbjct: 109 TMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEM 168
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W S+I NG E+L F M G+ P F VL +C+
Sbjct: 169 GIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACS 220
>gi|414878625|tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 465
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H Q+ K ++ S L+ +Y+ + D +L V W S+I C
Sbjct: 24 GKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQ-DVVIWTSVISGCV 82
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QN L E+L F + G+ PD SV+ +C L R GE + ++ G +
Sbjct: 83 QNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTA 142
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++M A+S ++D RFQ
Sbjct: 143 MGNSFIHMCARSGDVDAATR-RFQ 165
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
P F S+L++C L +F FG+ +H +++ D+Y +AL+++Y+ S M+
Sbjct: 3 PSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCME 57
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
LL+ V + +Q+HA+I K + + ++ ++L+ Y + ++ L L+
Sbjct: 84 ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 143
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +I+ + G ++L F+ M +GV+PD+ V P+VLK+C L G+
Sbjct: 144 V-RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGK 202
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++++G ++ +++L++MY +
Sbjct: 203 GVHGYVLKMGFGACVFVSSSLVDMYGK 229
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQI-FKTLEPNSRFLISRLL-FIYN-NFNLVHDSLCLLDTLK 66
LL + +A +L Q+ F ++ PN S +L F+ N N D + +L
Sbjct: 456 LLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLG 515
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+ W ++I Q+G E++ F +M +G+ P SVL +CT + +G
Sbjct: 516 FQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGR 575
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++H I R L + +L++MYA+ ++D
Sbjct: 576 AIHGFITRHEFCLSVPVATSLVDMYAKCGSID 607
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L N+LK S++ K +H + K F+ S L+ +Y ++ D+ + D++
Sbjct: 184 VLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM 243
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I QNGL E++ F M G+ P S L + L G
Sbjct: 244 -VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEG 302
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ HA I +DLD ++++N Y++
Sbjct: 303 KQGHAIAILNSLDLDNILGSSIINFYSK 330
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ + L ++ + KQ HA I +L+ ++ L S ++ Y+ L+ D+ +
Sbjct: 285 TVASFLSASANLDALIEGKQGHAIAILNSLDLDN-ILGSSIINFYSKVGLIEDAELVFSR 343
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V W +I Q+ + ++L M + D S+L + + + +
Sbjct: 344 M-LEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKL 402
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ H IR ++ D+ N++++MYA+ + +D
Sbjct: 403 GKEGHCYCIRRNLESDVVVANSIIDMYAKCERID 436
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
S KT Q QLHA + T N+ ++L+ Y + S + +T + P W
Sbjct: 10 SCKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNP-DSFMWG 68
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+I+C + E++ + +M+ + VFPSVL++C D G VH II+
Sbjct: 69 VLIKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRIIKC 128
Query: 136 GVDLDLYTNNALMNMYAQ 153
G D D + +L+ +Y +
Sbjct: 129 GFDNDPFIETSLLGLYGE 146
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
++H +I K N F+ + LL +Y + D+ + D + V+W SII
Sbjct: 120 KVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVR-DLVSWSSIISSYVDK 178
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E+L F ++ V D + SV ++C+ L + +S+H I+R VD +
Sbjct: 179 GEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALD 238
Query: 145 NALMNMYAQSQNM 157
N+L+ MY+ ++
Sbjct: 239 NSLIEMYSSCDDL 251
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H K F+ + L+ +Y+ + + + +K + VAW SII
Sbjct: 422 GRQIHGYAIKRCILG-EFVKNALIGMYSRCGFSDSAYMIFNDIKQKSS-VAWNSIISGFV 479
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G +E++ +M + + VF S +++C +V G+ +H +I GV+ DLY
Sbjct: 480 QSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLY 539
Query: 143 TNNALMNMYAQSQNM 157
AL +MYA+ ++
Sbjct: 540 IETALTDMYAKCGDL 554
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AK +H I + L + L+ +Y++ + ++ + + + ++W S+I C
Sbjct: 219 AKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTF-ISWTSMIYCYN 277
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DL 141
++G E+ FV+M+ V P+ VLKSC+ L R G+ +H ++ G+ D
Sbjct: 278 RSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDD 337
Query: 142 YTNNALMNMYA 152
L+ +YA
Sbjct: 338 CLGPVLIELYA 348
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +++ + GL E+L FV+M G+ D S + +C + + G +H
Sbjct: 369 VSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGY 428
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ + L + NAL+ MY++
Sbjct: 429 AIKRCI-LGEFVKNALIGMYSR 449
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWK 75
K Q +Q+HA++ S L SR+L +Y +F V + C L + + W
Sbjct: 91 VKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYS----LPWN 146
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
+IR + G +L F RM+GS V PD FP V+K+C L + + VH +
Sbjct: 147 WLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSM 206
Query: 136 GVDLDLYTNNALMNMY 151
G +DL+ ++L+ +Y
Sbjct: 207 GFHMDLFIGSSLIKLY 222
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + ++ + + + ++ +Y+ + D+ + D + V W +I QN
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQ-TDTVTWNGLIAGYVQN 357
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVF----PSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
G E++ F M+ SGV D F PSVLKS +L ++ + VH+ I+R GV D
Sbjct: 358 GFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL----KYCKEVHSYIVRHGVPFD 413
Query: 141 LYTNNALMNMYAQSQNMDM 159
+Y +AL+++Y + +++M
Sbjct: 414 VYLKSALVDIYFKGGDVEM 432
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L + + + K++H+ I + P +L S L+ IY V + C
Sbjct: 381 TFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDV-EMACKTFQQ 439
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++I NGL VE+L F +I G+ P+ SVL +C L + G
Sbjct: 440 NTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLG 499
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H I++ G++ +++ MYA+S +D+
Sbjct: 500 KELHCDILKKGLENVCQVGSSITYMYAKSGRLDL 533
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L+ +Y + +HD+ L D L + W ++ +NG +L F M
Sbjct: 213 FIGSSLIKLYTDNGYIHDAKYLFDELPV-RDCILWNVMLNGYVKNGDFNSALGTFQEMRN 271
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
S V P+ F +L C R G +H +IR G + D N ++ MY++ N+
Sbjct: 272 SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNL 329
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+LH + + + F+ S L+ +Y+ + + + D + V+W SII
Sbjct: 600 GKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNE-VSWNSIIAAYG 658
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+G E L F M+ +G+ PDH F ++ +C HA + VD +Y
Sbjct: 659 NHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACG-----------HAGL----VDEGIY 703
Query: 143 TNNALMNMYAQSQNMDMH--IYDRFQGFGFNGGREASVHEVLDKI 185
+ Y M+ + D + GR +HE D I
Sbjct: 704 YFRCMTEEYGICARMEHFACMVDLY-------GRAGRLHEAFDTI 741
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S+ L LL+ + S QLHAQ L + L+ +Y+ +H + +
Sbjct: 5 SSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVF 64
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + P+P + +++ + V+ ++ R++ SG+ PD P+VL++C D
Sbjct: 65 DGM--PSPSMHAYNVLLAASPPDAAVKLVS---RLVASGLRPDRYSVPAVLRACAESRDA 119
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
G +H +RLG+ ++ + AL++MYA++ + + GR V
Sbjct: 120 LLGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLG------------DAGR------VF 161
Query: 183 DKIPERN 189
D++PER+
Sbjct: 162 DEMPERD 168
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+ +++H ++ + L +S ++ L +Y V + + +++ V+W S+I C
Sbjct: 224 KGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEEK-NVVSWSSLISC 282
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+G+ E+L + M+ GV P+ F S+L SC+
Sbjct: 283 YGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCS 319
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 28 AQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLL 87
+Q+F ++ + + + ++ +V DS L +K ++W ++I QNGL
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK-ERDSISWTTMITGLIQNGLE 251
Query: 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147
E++ F M G+ D F SVL +C L + G+ +H IIR G + +++ +AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311
Query: 148 MNMYAQSQNMDM--HIYDRFQ------------GFGFNGGREASVHEVLDKIPERNG 190
++MY + +++ ++ R G+G NG E +V D +RNG
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDM--QRNG 366
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
++ + K++H I ++ ++ F+ S L+ +Y V + + + V+W +
Sbjct: 283 LRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANK-NVVSWTA 341
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
++ QNG E++ F M +G+ PD SV+ SC L G H + G
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401
Query: 137 VDLDLYTNNALMNMYAQSQNMD 158
+ + +NAL+ +Y + +++
Sbjct: 402 LISFITVSNALITLYGKCGSIE 423
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +++ + ++ + + Q H Q + + + + L+ +Y + DS L D +
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W +++ Q G E++ F RM+ G+ PD F +VL +C+
Sbjct: 433 -SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACS 483
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + F+ S L +Y+ L+ ++ + D + VAW ++I +N
Sbjct: 62 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKN 120
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G L ++ F M G V D +VF SVL + L D +S+H C+ + G +L++
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180
Query: 144 NNALMNMYAQSQNMD 158
NAL++MYA+S +++
Sbjct: 181 RNALIDMYAKSMDVE 195
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT F+ S L+ +Y L+ S+ L + +
Sbjct: 247 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 306
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ +AW ++I Q+G E++ F RMI SG+ P+H F S+L +C+
Sbjct: 307 EYRTD-IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS 357
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+ S+I + + E+L +V + GV P+ F S++K C + G +HA
Sbjct: 211 VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQ 270
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ + D + + L++MY +
Sbjct: 271 VIKTDLIRDSFVGSTLVDMYGK 292
>gi|302798817|ref|XP_002981168.1| hypothetical protein SELMODRAFT_114142 [Selaginella moellendorffii]
gi|300151222|gb|EFJ17869.1| hypothetical protein SELMODRAFT_114142 [Selaginella moellendorffii]
Length = 463
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW +II C Q G E+L F R+ GV PD F + L++CT L D G +H +
Sbjct: 28 AWTAIIGACAQRGHNREALEFFHRLDCEGVKPDIVSFINTLRACTNLEDLSEGRGIHRRL 87
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
G+D D+ NAL+NMY++ ++ ++DR
Sbjct: 88 SAEGLDSDVIVGNALVNMYSRCGYLEEARDVFDR 121
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY-NNFNLVHDSLCLLDTLKTPAPPVA 73
V++ TK ++ + ++F ++ + + L+ Y + ++ + D + T V
Sbjct: 134 VNMYTKCKSLERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENARAVFDRM-TTRTVVT 192
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +++ Q+G E++ + RM GV PD + +++ +C + G VH I+
Sbjct: 193 WNTLLTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIV 252
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
R G++ + AL++MY + ++D
Sbjct: 253 RAGLENGALLSTALVSMYGKCGSLD 277
>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 776
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
KQ+H Q+ K ++ S L+ +Y+ + D +L V W S+I C Q
Sbjct: 336 KQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQ-DVVIWTSVISGCVQ 394
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N L E+L F + G+ PD SV+ +C L R GE + ++ G +
Sbjct: 395 NELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAM 454
Query: 144 NNALMNMYAQSQNMDMHIYDRFQ 166
N+ ++M A+S ++D RFQ
Sbjct: 455 GNSFIHMCARSGDVDAAT-RRFQ 476
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ +H + K FL S ++ +Y + +++ L ++ P V I C
Sbjct: 231 AEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCR 290
Query: 83 QNGLLV--ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+ V E+L + + G+ P F S+L++C L +F FG+ +H +++ D
Sbjct: 291 EEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGD 350
Query: 141 LYTNNALMNMYAQSQNMD 158
+Y +AL+++Y+ S M+
Sbjct: 351 VYIGSALIDLYSGSGCME 368
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF--------- 122
V+W +++ + G E+L F M G+ + S++K C +
Sbjct: 169 VSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGG 228
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
R E+VH C+++ G+D DL+ +A+++MYA+
Sbjct: 229 RIAEAVHGCVVKAGLDADLFLASAMIDMYAK 259
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNL---VHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+HA + + S FL + LL Y + +H + L + + A V++ +I +
Sbjct: 21 VHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDEMPRRNA--VSYNLVIVAYS 78
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ GL SL F R D + + L +C+ +D R G++VHA ++ G+ L+
Sbjct: 79 RAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLF 138
Query: 143 TNNALMNMYAQSQNM 157
+N++ +MYA+ M
Sbjct: 139 LSNSVASMYARCGEM 153
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 22/165 (13%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+L V+ + + +++HA + KT S FL +RL+ +Y + + D+ + D +
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPE-R 307
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCF---VRMIGSGVY------------------PDHNV 108
V+W ++I +Q G ++L F V++ +GVY P+
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFT 367
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F +VL SCT + F G +H+ II+L + ++ ++L++MYA+
Sbjct: 368 FATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAK 412
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H+ I K + F+ S LL +Y +H++ + + L V+ +II
Sbjct: 384 GRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPE-RDVVSCTAIISGYA 442
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q GL E+L F R+ G G+ ++ + VL + + L G+ VH ++R + +
Sbjct: 443 QLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVV 502
Query: 143 TNNALMNMYAQSQNM 157
N+L++MY++ N+
Sbjct: 503 LQNSLIDMYSKCGNL 517
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 44/198 (22%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL------------------- 65
++HA+ K + F+ S L+ +Y D+ + DTL
Sbjct: 403 RIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNG 462
Query: 66 ----------KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
K PA +A W +II QN V++L F M+ SG P F SVL
Sbjct: 463 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLL 522
Query: 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--------------DMH 160
+C L G+ HA I+LG++ ++ AL +MYA+S ++ D+
Sbjct: 523 ACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVT 582
Query: 161 IYDRFQGFGFNGGREASV 178
QG NG E S+
Sbjct: 583 WTAMIQGLAENGLAEESI 600
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88
++F ++ + LL +Y+ + + +LD + V+W ++I Q G
Sbjct: 306 KVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPER-NEVSWGTLIARHEQRGNAA 364
Query: 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148
E++ + +M+ G P+ + F SVL +C L D R G +HA +++G +++ +++L+
Sbjct: 365 EAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLI 424
Query: 149 NMYAQSQNM--DMHIYDRF------------QGFGFNGGREASVHEVLDKIPERN 189
+MY + + I+D G+ +NG +++ + K+P RN
Sbjct: 425 DMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMY-LFKKMPARN 478
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI L+ + + +H + + N L++ LL Y +++ L +
Sbjct: 146 TLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMM 205
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I C QNG E+L F MI G P+ VL++C D G
Sbjct: 206 -AEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQG 264
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDR------------FQGFGFN 171
H IR G++ ++ + AL++MY + S ++ R GF N
Sbjct: 265 RKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLN 324
Query: 172 GGREASVHEVLDKIPERN 189
G S+ E + E N
Sbjct: 325 GMAHRSIEEFSIMLLENN 342
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 14 PVSIKTKSQAKQ------LHAQIFKTLEPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK 66
PV++K + ++ +H + K + S + S L+++Y + ++L + + L+
Sbjct: 45 PVALKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELE 104
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM-IGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V W S++ +NG +++ F RM S V PD +++ +CT L + R G
Sbjct: 105 KP-DIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLG 163
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
VH ++R G DL N+L+N YA+S+
Sbjct: 164 RCVHGFVMRRGFSNDLSLVNSLLNCYAKSR 193
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++++ +++ + + F +M PD+ P LK+C L + ++GE +H +
Sbjct: 9 WNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFLK 68
Query: 134 R-LGVDLDLYTNNALMNMYAQSQNM 157
+ + + DLY ++L+ MY + M
Sbjct: 69 KNVTLGSDLYVGSSLIYMYVKCGRM 93
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I T NG+ S+ F + ++ + PD + VL SC+ L + E H+
Sbjct: 312 VSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHS 371
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ G D + + +L+ +Y++
Sbjct: 372 YVIKYGFDSNPFIGASLVELYSR 394
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T+ ++ ++ ++ +Q H QI + + F+ S L+ +Y L+ D+ +
Sbjct: 139 SRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVF 198
Query: 63 DTLK------------------------------TPAPPVAWKSIIRCCTQNGLLVESLT 92
D + T + W +++ TQNGL ++L
Sbjct: 199 DEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALN 258
Query: 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
F RM G+ D F S+L +C L G+ +HA IIR D +++ +AL++MY+
Sbjct: 259 FFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYS 318
Query: 153 QSQNM 157
+ +++
Sbjct: 319 KCRSI 323
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L ++ Q KQ+HA I +T ++ F+ S L+ +Y+ + + +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I QNG E++ F M G+ PD SV+ SC L G
Sbjct: 334 SCK-NIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG 392
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H + G+ + +NAL+ +Y + +++
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425
>gi|293333281|ref|NP_001167971.1| uncharacterized protein LOC100381688 [Zea mays]
gi|223945233|gb|ACN26700.1| unknown [Zea mays]
Length = 413
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 41 LISRLLFIYNNFNLVHDSLCLL-DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
+++RL+++Y + S LL ++ + VAW ++I+ C + GL+ +++ ++M
Sbjct: 99 VVTRLIYMYAKCGQLGSSETLLHESTEVRCDVVAWNALIKACGELGLVEKAIGFAIQMHR 158
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+G+YPD+ F +L +L+ + G VHA I++ G + N+L+ MY + ++ +
Sbjct: 159 TGIYPDNVTFLEILHMISLIPSLKKGMEVHAHIVKRGFQNERAIANSLIYMYGRCGSLSL 218
Query: 160 HIYDRFQGF 168
+ + F G
Sbjct: 219 SV-NAFTGI 226
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II +QNG E+L F M +G+ P+ + SV+ C L+ G+ +H
Sbjct: 187 VSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCY 246
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IR G++ D+ N L+NMYA+ N++
Sbjct: 247 AIRSGIESDVLVVNGLVNMYAKCGNVN 273
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L + Q +Q+H ++ ++ + + L+ +Y V+ + L + +
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VAW +II +Q+G E+L F+ M G+ PD SVL +C + G
Sbjct: 384 PKKNV-VAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H IR G + ++ L+++YA+ N++
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVN 475
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 21/188 (11%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
++ TL++++ + Q KQ+H ++ + +++ L+ +Y V+ + L
Sbjct: 220 NSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF 279
Query: 63 DTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+ + P VA W +II + N E+L F RM G+ P+ SVL +C L
Sbjct: 280 E--RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G+ +H IR G + + NAL+NMYA+ N++ S +++
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN------------------SAYKL 379
Query: 182 LDKIPERN 189
+++P++N
Sbjct: 380 FERMPKKN 387
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V WK I +NG ++L + +M +G+ PD VF SV+K+C D + G VH
Sbjct: 86 VVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHED 145
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRF 165
II G + D+ AL +MY + +++ ++DR
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRM 181
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 25/187 (13%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T LI+LL+ KT AK H QIF + S + Y +++ LL
Sbjct: 30 TIPLISLLRQ---CKTLINAKLAHQQIFV---HGFTEMFSYAVGAYIECGASAEAVSLLQ 83
Query: 64 TLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
L V W ++IR + GLL ++L + +M G PDH FP VLK+C +
Sbjct: 84 RLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSL 143
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
R G SVHA + G+ +++ N+++ MY + +D H++
Sbjct: 144 RHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALD------------------DAHQMF 185
Query: 183 DKIPERN 189
D++ ER
Sbjct: 186 DEVLERK 192
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-------EPNSRFLISRLLFIYNNFNLVHDS 58
TL +LL S+ KQ HA + K + + + +++ L+ +Y +
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431
Query: 59 LCLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVLKS 115
+ D+++ V W +I Q+G ++L F ++ + + P+ L +
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491
Query: 116 CTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMDM--HIYDRFQ------ 166
C L + R G +HA +R + + LY N L++MY++S ++D ++D +
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551
Query: 167 ------GFGFNGGREASVH 179
G+G +G E ++H
Sbjct: 552 WTSLMTGYGMHGRGEEALH 570
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL--KT 67
+LK I + +HA + ++ F+ + ++ +Y + D+ + D + +
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERK 192
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRM---IGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V+W SI+ Q G +L RM + PD ++L +C + +
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQH 252
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH +R G+ D++ NAL++MYA+ M+
Sbjct: 253 GKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMN 286
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++I Q G E+L F +M G+ P+ S+L C + +G+ HA
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395
Query: 132 IIRLGVDL-------DLYTNNALMNMYA--QSQNMDMHIYDRFQG 167
+I+ ++L DL N L++MYA +S + I+D +G
Sbjct: 396 VIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEG 440
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCC 81
+ +H+ KT + ++++ L+ +Y V D + T++ P V +W +II
Sbjct: 312 GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAY 371
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G +L F+ M+ G+ P+ S+L +C L + GE HA I +LG D L
Sbjct: 372 VQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFL 431
Query: 142 YTNNALMNMY 151
+ N+L+ MY
Sbjct: 432 FVGNSLITMY 441
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D++ L + + +W ++I QN E+L + + SG P + F S L +C
Sbjct: 244 DAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSAC 303
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ D G +H+ I+ G + Y N L++MYA+ N++
Sbjct: 304 ANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 345
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL ++ +Q HA IFK F+ + L+ +Y D C+ + +
Sbjct: 398 TVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEM 456
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W +++ C QNGL E++ F +M G+ PD F VL +C+
Sbjct: 457 P-EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 507
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 23/189 (12%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLL-FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+HA+I T +R LI++LL F Y + + + L ++ P + S+I +
Sbjct: 36 QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKP-DTFLFHSLITLTS 94
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ESL C+ RM+ + + + F +V+KS L F GE++H + G LD Y
Sbjct: 95 KFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAY 154
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC- 201
AL++ YA+S G +V DK+PE+ V +S ++G
Sbjct: 155 VQAALVSFYAKS------------------GHVMIARKVFDKMPEKT-VVAWNSMISGYE 195
Query: 202 -NKFEKRVV 209
N F K V
Sbjct: 196 QNGFGKEAV 204
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
+S T ++K+ + S + +H ++ ++ + L+ Y V + +
Sbjct: 116 SSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKV 175
Query: 62 LDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
D K P V AW S+I QNG E++ F M GV PD + F S+L +C +
Sbjct: 176 FD--KMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVG 233
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------ 166
G VH I R DL++ ALMNMY++ N+ ++D +
Sbjct: 234 AIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMIS 293
Query: 167 GFGFNGGREASVHEVLDKIP---ERNGNVELSSGLAGC 201
G+G +G ++ E+ +++ R NV + L+ C
Sbjct: 294 GYGMHGHGSQAI-ELFNEMSFDGPRPNNVTFVAVLSAC 330
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N L++ + S+ K LH +I K F + LL +Y + + D+ L D +
Sbjct: 43 NALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM-PE 101
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+++ ++I+ ++ +E++ FVR+ V P+ F SVL++C + G +
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRL-HREVLPNQFTFASVLQACATMEGLNLGNQI 160
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H +I++G+ D++ +NALM++YA+ M+
Sbjct: 161 HCHVIKIGLHSDVFVSNALMDVYAKCGRME 190
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L+ +++ + Q+H + K + F+ + L+ +Y + +S+ L
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF--A 197
Query: 66 KTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++P V W ++I Q G ++L F+ M+ V + S L++C L
Sbjct: 198 ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 257
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G +H+ ++ D D+ NAL++MYA+
Sbjct: 258 GLQIHSLTVKTTFDKDIVVTNALIDMYAK 286
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L+ S+ Q+H+ KT + + L+ +Y + D+ + D L
Sbjct: 241 TYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFD-L 299
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I + +GL E+L F +M + V PD F VL +C
Sbjct: 300 MNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACA 351
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SI+ CC QNG +E++ F M G+ P+ P VL + + G S H
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCF 317
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+R G D+Y +AL++MYA+
Sbjct: 318 SLRKGFHHDIYVGSALVDMYAK 339
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+ W ++ ++G +++ VRM G G PD L + + D GE +H
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGY 181
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G LD AL++MY + D
Sbjct: 182 VVKAGCRLDACVATALIDMYGKCGRAD 208
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 23 AKQLHAQIFKTLEPNSRFLI--SRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
KQ+HA+I K+ N R LI S ++ Y+ + + D + V W +II
Sbjct: 270 GKQIHARILKS---NWRNLIVDSAVVNFYSKCGKISSAFRTFDRM-AKRDVVCWTTIITA 325
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C+Q+GL E+L +M+ G +P+ + LK+C F+ G +H I++ D
Sbjct: 326 CSQHGLGHEALLLLSQMLVDGFFPNEYTICAALKACGENKAFKCGTQLHGAIVKKICKSD 385
Query: 141 LYTNNALMNMYAQSQNM--DMHIYDRFQ------------GFGFNG-GREA 176
++ +L++MYA+ + ++DR + G+ NG G EA
Sbjct: 386 VFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGYARNGFGEEA 436
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 33/184 (17%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ ++ +IK +++HAQ K++ + ++ + L++ Y + +L +
Sbjct: 454 TLVCVMTACGTIKASLIGREVHAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVLKYI 513
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +II C + GL E+L M+ GV P+ + S LK+C L
Sbjct: 514 PLR-DVVSWTAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETPALS 572
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+++ N+AL+ MYA+ +I D FQ V D +
Sbjct: 573 --------------NVFVNSALIYMYAKCG----YIADAFQ--------------VFDNM 600
Query: 186 PERN 189
PERN
Sbjct: 601 PERN 604
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH I K + + F+ + L+ +Y + S + D +K W SII +N
Sbjct: 372 QLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVR-NTATWTSIISGYARN 430
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G E+L F M VY + + V+ +C + G VHA I+ + ++Y
Sbjct: 431 GFGEEALNFFRLMKRKKVYVNKSTLVCVMTACGTIKASLIGREVHAQKIKSVILTNMYIE 490
Query: 145 NALMNMYAQSQN 156
L+ Y + ++
Sbjct: 491 TTLVWFYCRCKD 502
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 17 IKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
I + + K +HAQ+ K + N L+ Y F S ++ + P + W
Sbjct: 43 ITSLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFW-SAAMVFYVGLPRNYLKWN 101
Query: 76 SIIR-CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S + + G L L F + G GV D V+ LK+CT ++D G +H C+I+
Sbjct: 102 SFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIK 161
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G DLD+Y ALMN Y + ++
Sbjct: 162 RGFDLDVYLRCALMNFYGRCWGLE 185
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 11 LKNP-VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP- 68
L NP +S+ +K+ +L ++F ++E + + ++ Y ++D+ L L++
Sbjct: 271 LCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSD 330
Query: 69 APP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P V W ++ +G E L RM G G P+ + SVL++ + L G+
Sbjct: 331 MKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGK 390
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
H ++R G D D+Y +L++MY ++ ++
Sbjct: 391 ETHGYVLRNGFDCDVYVGTSLIDMYVKNHSL 421
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +Q G +SL F +M GV P+ +L++C L + G+ +H
Sbjct: 507 VSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCL 566
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDRFQ------------GFGFNG-GREA 176
IR G D++ AL++MY++S ++ + H ++ R Q GF G G+EA
Sbjct: 567 SIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEA 626
Query: 177 -SVHEVLDKIPERNGNVELSSGLAGC 201
SV + K+ + ++ L+ C
Sbjct: 627 ISVFNEMQKVGVGPDAITFTALLSAC 652
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
K + ++HA + ++ N++ I L+ +Y ++D+ C++ L V W S+I
Sbjct: 404 KRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA-CVVFRLMDNKDSVTWNSMI 462
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
QN +E++ F M + +YP + S L SC L GE +H ++LG+D
Sbjct: 463 TGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLD 522
Query: 139 LDLYTNNALMNMYAQ 153
LD+ +NAL+ +Y +
Sbjct: 523 LDVSVSNALLALYGE 537
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A++LH Q+FK N FL + L+ IY + + D + V+W +I T
Sbjct: 92 AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPL-RNLVSWSCLISGYT 150
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF--RFGESVHACIIRLGVDLD 140
+N + E+ F +M+ G P+H F SV+++C ++ +FG +H + + D
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND 210
Query: 141 LYTNNALMNMYAQSQNM 157
+ +N L++MY + M
Sbjct: 211 VTASNVLISMYGNALGM 227
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I +L S+ KQ+HA + K + + LL Y + + +
Sbjct: 594 TFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRM 653
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S+I N LL +++ M+ G D F +VL +C + G
Sbjct: 654 SDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERG 713
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
VH C +R ++ D+ +AL++MYA+ +D
Sbjct: 714 MEVHGCSVRACLESDIVIGSALVDMYAKCGRID 746
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T+I+ L + S+ S +QLH + K + + LL +Y V +
Sbjct: 489 SNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAF 548
Query: 63 DTLKTPAPPVAWKSIIRCCTQNG-LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
+L V+W S+I + ++E++ F+ M+ +G P+ F ++L + + L
Sbjct: 549 -SLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSL 607
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA +++ V D NAL+ Y + +M
Sbjct: 608 HELGKQIHALVLKRNVAADTAIENALLACYGKCGDM 643
>gi|297738050|emb|CBI27251.3| unnamed protein product [Vitis vinifera]
Length = 382
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 10/145 (6%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T + QLHA +F T ++L+ Y + S + DT P W +I
Sbjct: 23 TSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP-DSFMWGVLI 81
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHN-----VFPSVLKSCTLLVDFRFGESVHACII 133
+C G E+++ + M VY D VFPSVLK+C+ D G VH +I
Sbjct: 82 KCYVWGGFFEEAVSLYHEM----VYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI 137
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ G + D +L+ MY + +D
Sbjct: 138 KCGFESDAVVETSLLCMYGEMSCLD 162
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +I C Q+G E+L F +M + P+ VL +C L + G SVH +I
Sbjct: 216 WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVI 275
Query: 134 RLGVDLDL-YTNNALMNMYAQSQNM-DMH 160
R +D +L + ALM +YA + N+ D H
Sbjct: 276 RRAMDPELDFLGPALMELYADTGNLRDCH 304
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
T +L +++ Q K++H Q+ F NS L+ +Y + ++
Sbjct: 62 TYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENS------LVNMYAKCGSITEAR 115
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D +K V+W II + G E+L + +M GV P+ F SVL +C+ L
Sbjct: 116 EVFDGMKQR-TVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSL 174
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
G++VHA + G DL NAL+++Y + ++D ++DR +
Sbjct: 175 GALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMK 223
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
W S+I +Q+G E++ F M S V P+ + +VL +C+ + G+ VH
Sbjct: 26 WNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQGKEVHRQ 85
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ G D N+L+NMYA+
Sbjct: 86 MVDAGFQFDAAAENSLVNMYAK 107
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 6/155 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L S+ + K +HAQ+ + + L+ +Y V + + D +
Sbjct: 163 TFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRM 222
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V+W ++I + E++ + M V P+ SVL +C L + G
Sbjct: 223 KIR-NVVSWTAMISSYAHHRHSEEAIQLYKAM---DVAPNAVTLASVLSACASLGNAEEG 278
Query: 126 ESVHACIIRL--GVDLDLYTNNALMNMYAQSQNMD 158
+VH + G+ D NAL+NMYA+ + D
Sbjct: 279 RAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGD 313
>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
Length = 656
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
+ +L + S K Q+H Q K + ++ S L+ +Y + H++ + + L
Sbjct: 185 VICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVL 244
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I+ TQN L ++L F+ M GV P+ + L SC L + G
Sbjct: 245 PEK-NIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG 303
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ AC ++ G L NALMNMY++S +++
Sbjct: 304 NALGACTMKTGHWGLLPVCNALMNMYSKSGSVE 336
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + F+ S L +Y+ L+ ++ + D + VAW ++I +N
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKN 201
Query: 85 GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G L ++ F M G V D +VF SVL + L D +S+H C+ + G +L++
Sbjct: 202 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 261
Query: 144 NNALMNMYAQSQNMD 158
NAL++MYA+S +++
Sbjct: 262 RNALIDMYAKSMDVE 276
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT F+ S L+ +Y L+ S+ L + +
Sbjct: 328 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 387
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ +AW ++I Q+G E++ F RMI SG+ P+H F S+L +C+
Sbjct: 388 EYRTD-IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS 438
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+ S+I + + E+L +V + GV P+ F S++K C + G +HA
Sbjct: 292 VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQ 351
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRFQ 166
+I+ + D + + L++MY + ++ M +++ +
Sbjct: 352 VIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIE 388
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+++L+ K + KQ+H I K+ + ++ ++L+ +Y V D+ + D L
Sbjct: 3 VDVLQRCFKHKDLTSVKQVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKL-V 61
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
W ++I ++G +++ + +M G P+ + S+LK+C V ++G+
Sbjct: 62 KKNVFNWTTMIGGYAEHGRPADAIEVYNQMRQEGGRPNEVTYLSILKACACPVGLKWGKE 121
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+HA I G D+ AL+NMYA+S ++
Sbjct: 122 IHAHISHGGFRSDVPVQTALVNMYAKSGSI 151
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++L S KQ+H K + + + L+ +Y + D+ + D +
Sbjct: 306 TYVSILTASASAGALEWVKQVHNHARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQM 365
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
W ++I Q+G E+ + F+RM GV PD + S+L + +
Sbjct: 366 SVR-NVFTWNAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASASTGALGWV 424
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ VH ++ G+D D+ NAL++MY ++ ++
Sbjct: 425 KEVHRQAVQAGLDSDVRVGNALVHMYCKTGSI 456
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 6 TLINLLKN---PVSIKTKSQAKQLHAQI----FKTLEPNSRFLISRLLFIYNNFNLVHDS 58
T +++LK PV +K K++HA I F++ P L++ +Y + D+
Sbjct: 102 TYLSILKACACPVGLK---WGKEIHAHISHGGFRSDVPVQTALVN----MYAKSGSIKDA 154
Query: 59 LCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL--KSC 116
+ D + + W +I Q+G E+ + F++M G PD + S+L +C
Sbjct: 155 RLVFDEM-AERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTATAC 213
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ + + VH ++ G D D+ NAL+++Y++S ++D
Sbjct: 214 SSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVD 255
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
K++H K + + + L+ +Y+ V D+ + + + ++W ++I Q
Sbjct: 223 KEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGM-LDRDVISWSAMIGGLAQ 281
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
NG E+ + F++M GV P+ + S+L + + + VH + G+ D
Sbjct: 282 NGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARKAGLGSDFRV 341
Query: 144 NNALMNMYAQSQNMD 158
NAL++MYA+S ++D
Sbjct: 342 CNALVHMYAKSGSID 356
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ A + W +I C +N + E++ F +M G PD S+L++C+L R G
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H + R D DL NAL++MYA+ + +
Sbjct: 600 KEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSL 633
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+K K +H K F+ + L+ +Y N V ++ + D L V W S
Sbjct: 356 LKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFD-LMPHRNVVTWNS 414
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+ C G + L F M+ +GV PD S+L +C+ L D + G+ +H +R G
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188
+ D++ NAL+++YA+ + REA V V D IP R
Sbjct: 475 MVEDVFVCNALLSLYAKCVCV----------------REAQV--VFDLIPHR 508
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K +H K + F+ + L+ +Y + V ++ + D L + W S+ C
Sbjct: 261 GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFD-LMPHRNVITWNSLASCYV 319
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G + L F M +GV PD S+L +C+ L D + G+++H ++ G+ D++
Sbjct: 320 NCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVF 379
Query: 143 TNNALMNMYA 152
AL+N+YA
Sbjct: 380 VCTALVNLYA 389
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L ++ K++H + + F+ S + Y V ++ + D L
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFD-L 201
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+ C G + L F M+ GV PD +L +C+ L D + G
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMY 151
+++H ++ G+ +++ +NAL+N+Y
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLY 287
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W S+ C G + L F +M + V + S+L C+ L D + G+ +H
Sbjct: 107 VTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++R G+ D++ ++A +N YA+
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAK 188
>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 700
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
++ +++ Q H F L P FL++R + Y V D+ L + + +W
Sbjct: 75 ALVVQARKVQSHLVTFSPLPPI--FLLNRAIEAYGKCGCVDDARELFEEMPERDGG-SWN 131
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I C QNG+ E F RM GV F VLKSC L++D R +H +++
Sbjct: 132 AVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKY 191
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G ++ +++++Y + + M
Sbjct: 192 GYSGNVDLETSIVDVYGKCRVM 213
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH + K + L + ++ +Y ++ D+ + D + P+ V+W I+R +
Sbjct: 182 RQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSD-VSWNVIVRRYLE 240
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G E++ F +M+ V P ++ SV+ +C+ + G+ +HA ++L V D
Sbjct: 241 MGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVV 300
Query: 144 NNALMNMYAQSQNMD--MHIYDR------------FQGFGFNG-GREASVHEVLDKIPER 188
+ ++ +MY + ++ ++D+ G+ +G REA E+ D +PER
Sbjct: 301 STSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREA--RELFDLMPER 358
Query: 189 N 189
N
Sbjct: 359 N 359
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L I KQ H I++ + + + LL +Y + + +
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +++ + G ++L+ F M P ++L C + G
Sbjct: 457 SELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLG 515
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+++H +IR G +D+ A+++MY++ + D I
Sbjct: 516 KAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAI 551
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ W SIIR C +NG E F+ + GV PDH F +L++C
Sbjct: 563 ILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVHDSL 59
T+T +++++ S+ +Q KQ+HAQ+ T + F SRLL +N ++ ++
Sbjct: 47 TNTSIIMDMVDKCTSM---TQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAI 103
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L +++ P W +IIR + ++L +++M+ GV P+ FP +LK C+
Sbjct: 104 KLFKSIQDPNI-FMWNTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGCS-F 161
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
+ + +H +++ G DLDL+ N L+ +Y+ ++ D ++ FG R+ S+
Sbjct: 162 CSIQSCKQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLT----DAWKLFGEFPERDLSI 216
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
KQ+H + K +++RL+ +Y+ F+ + D+ L + W ++I Q
Sbjct: 168 KQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSI-WTTMISGYAQ 226
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
N E+L F RM+ G P+ SVL C GE +H +I GV++ +
Sbjct: 227 NFCANEALVLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVEIGVIL 286
Query: 144 NNALMNMYAQ 153
AL++MYA+
Sbjct: 287 GTALVHMYAK 296
>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
Length = 677
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A+ + + F + F+ S LL +Y+ + +++ + D + VAW +++
Sbjct: 126 AESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRK-DRVAWSTMVAGFV 184
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G VE+L + RM GV D V V+++C + R G SVH ++R + +D+
Sbjct: 185 TAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVV 244
Query: 143 TNNALMNMYAQSQNMDM 159
T +L++MYA++ ++D+
Sbjct: 245 TTTSLVSMYAKNGHLDV 261
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I QNG VE+L F + G+ P S L +C + + G+S+H
Sbjct: 275 VTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGF 334
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+R ++ A+++MY++ +++
Sbjct: 335 ILRR-LEWQCILGTAVLDMYSKCGSLE 360
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L++ L S+ K +H I + LE L + +L +Y+ + + L + L
Sbjct: 311 ALVSALLACASVGFLKLGKSIHGFILRRLEWQC-ILGTAVLDMYSKCGSLESARKLFNKL 369
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+ V W +II CC +G ++L F + +G+ PDH F S+L +
Sbjct: 370 SSR-DLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSA 418
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 16 SIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPV 72
S ++ Q +Q+ AQ+ + L ++R L + F + + NL H + + TP+P +
Sbjct: 25 SCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRH-ARSFVHHAATPSP-I 82
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +IR + +E+ F +M G P+ FP +LKSC + G+ VHA
Sbjct: 83 SWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFEGKQVHADA 142
Query: 133 IRLGVDLDLYTNNALMNMYA 152
++ G+D D+Y N L+N Y
Sbjct: 143 VKCGLDSDVYVGNNLINFYG 162
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M + T LLK+ + KQ+HA K + ++ + L+ Y + D+
Sbjct: 113 MPNKLTFPFLLKSCAVASALFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARK 172
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ + V+W S++ C ++ L + + F RM G G PD +L +C L
Sbjct: 173 VFGEMPERTV-VSWNSVMTACVESLWLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELG 231
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
G VH+ ++ G+ L + AL++MY +S
Sbjct: 232 YLSLGRWVHSQLVLRGMVLSVQLGTALVDMYGKS 265
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QN ++T F RM+ S V P SVL +C L F G SVH
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY 373
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
I+R + LD+ + N+L+ MYA+ +++ ++DR
Sbjct: 374 ILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LHA + + + L + +L +Y V D+ L + L ++W S++ Q G
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFE-LMDARDVISWNSLVSGYAQLG 226
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ E L +RM G+ PD F S++ + + G+ VH I+R G++ D +
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286
Query: 146 ALMNMYAQSQNMD 158
+L+ MY + N++
Sbjct: 287 SLIGMYLKCGNVN 299
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
++ +II + G + L + M+ + PD + FPS++K+CT L F G S H +
Sbjct: 15 SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I G D Y +L+N Y++ FG N S +V D + +RN
Sbjct: 75 IVDGYSSDSYIATSLINFYSK--------------FGHN----QSARKVFDTMDDRN 113
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
M ST T+ ++L + + +H I + L+ S+ + L+ +Y +
Sbjct: 345 MPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQ---NSLVTMYAKCGHLEQ 401
Query: 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
S + D + + V+W +I+ QNG L ++L F M + PD S+L++C
Sbjct: 402 SCSVFDRM-SRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACA 460
Query: 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREAS 177
+ G+ +H + + + + + AL++MY++ ++ S
Sbjct: 461 SIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDL------------------GS 502
Query: 178 VHEVLDKIPERNGNVELSSGLAG 200
+ D++P+++ V SS +AG
Sbjct: 503 AQKCFDRMPQQD-LVSWSSIIAG 524
>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Cucumis sativus]
Length = 710
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 12 KNPVS----IKTKSQAKQLHA--QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
KNPVS +K + + ++ ++F+ + + ++ ++ +Y+ + + L +++
Sbjct: 332 KNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESV 391
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K+ PV W S+I QN +L ++ M + V + F ++ ++CT L + G
Sbjct: 392 KSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLG 451
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
+++H IR D ++Y +L++MYA+ + IYD F
Sbjct: 452 QALHVHAIREAFDSNVYVGTSLIDMYAKCGS----IYDAQTSFA 491
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRCCTQN--- 84
Q+F L + L LL Y NL+ D+L L +K P V AW ++I ++
Sbjct: 159 QVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLF--MKIPTRDVVAWTTMISAYARSEHN 216
Query: 85 ---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
GL L C +RM G V P+ F SV+++C + +G+ VH + + G D
Sbjct: 217 CKRGL---ELFCSMRMNGE-VEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDH 272
Query: 142 YTNNALMNMYAQSQNMD--MHIYDR------------FQGFGFNGGREASVHEVLDKIPE 187
+AL+ Y Q + +D +YD +G F GR E+ K+ E
Sbjct: 273 SVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIF-AGRINDAEEIFCKLRE 331
Query: 188 RN 189
+N
Sbjct: 332 KN 333
>gi|302782904|ref|XP_002973225.1| hypothetical protein SELMODRAFT_11486 [Selaginella moellendorffii]
gi|300158978|gb|EFJ25599.1| hypothetical protein SELMODRAFT_11486 [Selaginella moellendorffii]
Length = 193
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q + +H +I T L + +L +Y + ++ + D L V+W +++
Sbjct: 36 QGRMIHQRILATGYDRDLVLQTAVLNMYGKCGCLDEAREMFDHLGKKRNSVSWNAMLSAY 95
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+Q G E+L F RM G PD F +VL C+ +F G +H+ + G+ D+
Sbjct: 96 SQFGCYKEALDLFKRMNLEGEKPDLVSFATVLAVCSSAREFCEGRKIHSIVRGTGIQADV 155
Query: 142 YTNNALMNMYAQS 154
N L++MYA S
Sbjct: 156 ILQNTLVSMYASS 168
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 96 RMIGSGVYPDHNVFPSVLKSCTLLVDF-RFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
RM G+ PD VF SV+ +C+ + G +H I+ G D DL A++NMY +
Sbjct: 7 RMCLEGMDPDEFVFASVMNACSGRRELLEQGRMIHQRILATGYDRDLVLQTAVLNMYGKC 66
Query: 155 QNMD 158
+D
Sbjct: 67 GCLD 70
>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
Length = 563
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLE-----PNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+LL++ + Q K +H + T P+ L ++L+ Y++F V + + D
Sbjct: 16 SLLQSCIGANAFRQGKSVHHRAIITASSDPSPPDLLHLSTKLVMFYSHFGDVAAARAVFD 75
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ + V+W +++ +NG E+L F M+ SG P+ F S ++C R
Sbjct: 76 GMPHRSV-VSWTAMVSGYAKNGRAPEALELFALMLRSGARPNQFTFGSAARACAGGRCAR 134
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMY 151
GE VHAC + D++ +ALM+M+
Sbjct: 135 SGEQVHACAAKGRHAGDMFVQSALMDMH 162
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+HA K F+ S L+ ++ V D+ L ++ V+W +++R
Sbjct: 135 SGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSVGDARRLFAEMERK-DLVSWNALMRGF 193
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ G ++L F M+ G+ PDH F S LK+C + E +H CII+LG +
Sbjct: 194 VERGHYSDALGLFASMLRDGMLPDHFTFGSALKACGAISVIFNVELIHTCIIKLGYWDEK 253
Query: 142 YTNNALMNMYAQSQNMDMH--IYD 163
+L++ YA+ +++ IYD
Sbjct: 254 VATASLIDSYAKCRSLSSARVIYD 277
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
L+ + N SIK +Q +HA + K L + L+ +Y DS D +
Sbjct: 325 ALLGVCANVASIKFGTQ---IHAYMHKKQPMGDLALDNALVDMYAKSGEYLDSRRAFDEM 381
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ ++W S+I C Q+G +++T F RM GV P+ F S+L +C+
Sbjct: 382 PSR-NVISWTSLITACAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACS 432
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+TL L T Q KQ+HAQ I + F SRL F SL
Sbjct: 16 RTLATLALISDKCTTLDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRI 75
Query: 64 TLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
TP P W ++IR T +L+ +V M S V P + FP +LK+C + F
Sbjct: 76 FHSTPRPNSFMWNTLIRAQTHAP---HALSLYVAMRRSNVLPGKHTFPFLLKACARVRSF 132
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182
+ VH +I+ G+D D + +AL+ Y+ S G S +V
Sbjct: 133 TASQQVHVHVIKFGLDFDSHVVDALVRCYSVS------------------GHCVSARQVF 174
Query: 183 DKIPER 188
D+ PE+
Sbjct: 175 DETPEK 180
Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK +++ + ++Q+H + K ++ L+ Y+ + + D +TP
Sbjct: 122 LLKACARVRSFTASQQVHVHVIKFGLDFDSHVVDALVRCYSVSGHCVSARQVFD--ETPE 179
Query: 70 PPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
+ W +++ QN E+L F M+G G P SVL +C GE +
Sbjct: 180 KISSLWTTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERI 239
Query: 129 HACIIRLGVDL--DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
H + GV L + AL+ MYA++ G A + D++P
Sbjct: 240 HEFMKVKGVGLGEGVILGTALVYMYAKN------------------GEIAMARRLFDEMP 281
Query: 187 ERN 189
ERN
Sbjct: 282 ERN 284
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
AKQLHA + + L+++L+ +Y + S ++ +W S++
Sbjct: 67 AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNI-FSWNSMVSAYV 125
Query: 83 QNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ G +S+ C ++ SGV PD FP VLK+C L D GE +H ++++G + D+
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDV 182
Query: 142 YTNNALMNMYAQ 153
Y +L+++Y++
Sbjct: 183 YVAASLIHLYSR 194
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + K + F+ + L+ +Y+ F + D+ + D ++ V+W SII QN
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEV-RDLVSWNSIIAAYEQND 328
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL-GVDLDLYTN 144
V +L F M+ G+ PD S+ L D R G +VH ++R +++D+
Sbjct: 329 DPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIG 388
Query: 145 NALMNMYAQSQNMD 158
NAL+NMYA+ ++D
Sbjct: 389 NALVNMYAKLGSID 402
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIR 79
+ +++H + K + ++ + L+ +Y+ F V + + + P V +W ++I
Sbjct: 164 ADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVF--VDMPVRDVGSWNAMIS 221
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
QNG + E+L RM V D S+L C D G VH +I+ G++
Sbjct: 222 GFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLES 281
Query: 140 DLYTNNALMNMYAQ 153
D++ +NAL+NMY++
Sbjct: 282 DVFVSNALINMYSK 295
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
++W ++I QNGL E++ + M G + P+ + S+L + + + + G +H
Sbjct: 417 ISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHG 476
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+I+ + LD++ L++MY + ++
Sbjct: 477 RLIKNCLFLDVFVATCLIDMYGKCGRLE 504
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD---SLCLLDT 64
++LLK SIK Q+H+QI + FL+++L+ +++ + D + +LD
Sbjct: 668 LSLLKLCSSIK---HLYQIHSQIQVSGLQGDTFLVTQLI-KFSSLSPSKDLSYAQSILDH 723
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P P + W +IR + ++L + M G+ P+ FP +LK+C +
Sbjct: 724 SVHPVP-LPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKE 782
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ VH +I+ G+D D+Y NN L+N Y + +
Sbjct: 783 GKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKI 815
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK + + KQ+H ++ K ++ + L+ Y + + D+ + D +
Sbjct: 770 LLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERT 829
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W ++I C ++ L E++ F++M G PD +L C + + G +H
Sbjct: 830 V-VSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIH 888
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ 166
+ +I G+ L+ AL++MYA+S + ++DR +
Sbjct: 889 SQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMK 927
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + E NS F+I+ L+ +Y + S LL + V W +++
Sbjct: 134 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSF-GGRDLVTWNTVLSSLC 191
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QN L+E+L M+ GV PD SVL +C+ L R G+ +HA ++ G +D +
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251
Query: 142 YTNNALMNMY 151
+ +AL++MY
Sbjct: 252 FVGSALVDMY 261
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K+LHA K +L+ NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 234 GKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL-WNAMIAG 291
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+QN E+L F+ M S G+ + V+ +C F E++H +++ G+D
Sbjct: 292 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 351
Query: 140 DLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
D + N LM+MY++ +D M I+ + +
Sbjct: 352 DRFVQNTLMDMYSRLGKIDIAMRIFGKME 380
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT-NNALMNMYAQSQ 155
MI G+ PD+ FP++LK+ L D G+ +HA + + G +D T N L+N+Y +
Sbjct: 1 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60
Query: 156 NMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206
+ FG +V++V D+I ERN V +S ++ FEK
Sbjct: 61 D-----------FG-------AVYKVFDRISERN-QVSWNSLISSLCSFEK 92
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 30/200 (15%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ ++ T+ ++ V S+ + +H + K RF+ + L+ +Y+ + ++
Sbjct: 315 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 374
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNG------LLVESLTCFVRMIGSG-----VYPDHNVF 109
+ ++ V W ++I + LL+ + R + G + P+
Sbjct: 375 IFGKMED-RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 433
Query: 110 PSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
++L SC L G+ +HA I+ + D+ +AL++MYA+ + M
Sbjct: 434 MTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS--------- 484
Query: 170 FNGGREASVHEVLDKIPERN 189
+V D+IP++N
Sbjct: 485 ---------RKVFDQIPQKN 495
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-APPVAWKSIIRC 80
+A++L ++ +T E + LIS + + V +S+ + + P V+W + I
Sbjct: 105 EARKLFDEMPQTNEISWTALISGFM----KYGRVRESMWYFE--RNPFQNVVSWTAAISG 158
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QNG VE++ F++++ S V P+ F SV+++C L DF G SV I++ G + D
Sbjct: 159 YVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHD 218
Query: 141 LYTNNALMNMYAQSQNMDM--HIYDRFQ 166
L +N+L+ + + + + ++DR +
Sbjct: 219 LAVSNSLITLCLRMGEIHLAREVFDRME 246
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
L ++F +E + +L +Y + + ++ + D + V+W ++I Q+
Sbjct: 236 HLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQ-RNEVSWSAMIARYCQS 294
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
G ESL F RMI G P+ + F S+L + + + G ++H + ++G + D++ +
Sbjct: 295 GYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVS 354
Query: 145 NALMNMYAQ-SQNMDMH-IYDRF------------QGFGFNGGREASVHEVLDKIPERNG 190
++L++MY + + D ++D G+ NG E + + + + +P RN
Sbjct: 355 SSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKY-LFNIMPVRN- 412
Query: 191 NVELSSGLAG---CNKFEK 206
NV S+ +AG C +F++
Sbjct: 413 NVSWSAIIAGHLDCEQFDE 431
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II E F MI G P+ + F S+L +C G+++H
Sbjct: 414 VSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGK 473
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I++LG+ D Y AL +MYA+S +++
Sbjct: 474 IVKLGIQCDTYVGTALTDMYAKSGDIE 500
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TLI L+K ++ K +H I ++ S +L + ++ +Y L+ ++ L +T
Sbjct: 212 TLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFET 271
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V W ++I + VE+ F +M+ + P+ ++L SC+ L R
Sbjct: 272 -SVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRH 330
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+SVH +IR G+++D + ++MYA+ N+ M V D
Sbjct: 331 GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQM------------------ARTVFDM 372
Query: 185 IPERN 189
+PERN
Sbjct: 373 MPERN 377
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I NGL E+L CF +M V P+ F S+L +C+
Sbjct: 379 ISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACS 424
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNL-VHDSLC 60
S ++ I+ LK S K+ + KQ+HAQIF+ L + L + F + FN ++ +
Sbjct: 36 SQQSCISYLK---SCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEK 92
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ ++ P + + II+ + G +L F ++ G++PD+ +P V K+ L
Sbjct: 93 MFKYIRYPCLLI-YNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLG 151
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ E + + + G++ D Y N+L++MYAQ D+ +
Sbjct: 152 EVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDV------------------MKM 193
Query: 181 VLDKIPERN---GNVELSSGLAGCNKFEKRV 208
+ D++P+R+ NV + SG C +FE +
Sbjct: 194 LFDEMPDRDVISWNV-MISGYVKCRRFEDAI 223
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 23/189 (12%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S+A++L + KT ++ + L+ +Y L L D + ++W +I
Sbjct: 154 SKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEM-PDRDVISWNVMISG 212
Query: 81 CTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ +++ F RM SG+ PD S L +CT L G+ +H +R V
Sbjct: 213 YVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHH-YVRDNVKF 271
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSG 197
NAL++MY + + + V +++P +N + SG
Sbjct: 272 TPIIGNALLDMYCKCGCLSI------------------ARAVFEEMPSKNVICWTTMVSG 313
Query: 198 LAGCNKFEK 206
A C + E+
Sbjct: 314 YANCGELEE 322
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 33/207 (15%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
+++LL Q K +H I + P + + L+ +Y + +L + L+
Sbjct: 373 VVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLR 432
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W SII NG ++L F +M +GV PD F VL +C+
Sbjct: 433 VK-DTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACS--------- 482
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGF------NGGREASVHE 180
H ++ G + S M+ I + + +G G E
Sbjct: 483 --HGGLVEEG------------RKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEE 528
Query: 181 VLDKIPERNGNVEL---SSGLAGCNKF 204
++ KIP+ N + + S L+ C +
Sbjct: 529 LIKKIPDENKAITVPLYGSLLSACRIY 555
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 28/123 (22%)
Query: 64 TLKTPAPP-------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
T KTP P +W +R T++ E+++ ++ M SG PD+ FP+VLK+
Sbjct: 43 TSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAV 102
Query: 117 TLLVDFRFGESVHACIIRL---------------------GVDLDLYTNNALMNMYAQSQ 155
+ L D + GE +HA ++ G+ +TNNALM MYA+
Sbjct: 103 SGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLG 162
Query: 156 NMD 158
+D
Sbjct: 163 RVD 165
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 23 AKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K++HA + + L NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 233 GKEIHAYVLRNNDLIENS-FVGSALVDMYCNCRQVESGRRVFDHILGRRIEL-WNAMISG 290
Query: 81 CTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRLGVD 138
+NGL ++L F+ MI +G+ P+ SV+ +C L G+ +HA IR +
Sbjct: 291 YARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLA 350
Query: 139 LDLYTNNALMNMYAQ 153
D+ +AL++MYA+
Sbjct: 351 SDITVGSALVDMYAK 365
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F + L+ +Y V DS L ++ V+W ++I +Q+ E+L F M+
Sbjct: 149 FTNNALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 207
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL--DLYTNNALMNMYAQSQNM 157
GV D SVL +C+ L G+ +HA ++R DL + + +AL++MY + +
Sbjct: 208 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR-NNDLIENSFVGSALVDMYCNCRQV 266
Query: 158 D--MHIYDRFQG 167
+ ++D G
Sbjct: 267 ESGRRVFDHILG 278
>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C+QNG ES+ FV+M G+ P+ S+L++C L + G+ +H
Sbjct: 94 VSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCL 153
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
IR DLY AL++ Y++S +++
Sbjct: 154 SIRKSFIEDLYVATALIDTYSKSGDLE 180
>gi|449529626|ref|XP_004171799.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g04860-like [Cucumis sativus]
Length = 704
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W S+I C Q G ++++ F +M SG PD S+L +C + FGE +H I
Sbjct: 428 SWNSVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGEILHCYI 487
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+R +DL+ + AL++MY + MD
Sbjct: 488 LRNNLDLEGFVGTALVDMYVKCGRMD 513
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
K++A QL K ++ + L +Y+ V + L D V+W ++I
Sbjct: 79 KAEANQLQTHFIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEK-DVVSWNALIS 137
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
T+ G ++ FV M P S++ SC F G+S+H ++ G+DL
Sbjct: 138 GYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDL 197
Query: 140 DLYTNNALMNMYAQSQNMD 158
D NAL++MY + ++D
Sbjct: 198 DSQVKNALVSMYGKCADLD 216
>gi|449434412|ref|XP_004134990.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Cucumis sativus]
Length = 704
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W S+I C Q G ++++ F +M SG PD S+L +C + FGE +H I
Sbjct: 428 SWNSVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGEILHCYI 487
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMD 158
+R +DL+ + AL++MY + MD
Sbjct: 488 LRNNLDLEGFVGTALVDMYVKCGRMD 513
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
K++A QL K ++ + L +Y+ V + L D V+W ++I
Sbjct: 79 KAEANQLQTHFIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEK-DVVSWNALIS 137
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
T+ G ++ FV M P S++ SC F G+S+H ++ G+DL
Sbjct: 138 GYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDL 197
Query: 140 DLYTNNALMNMYAQSQNMD 158
D NAL++MY + ++D
Sbjct: 198 DSQVKNALVSMYGKCADLD 216
>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
Length = 1490
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +NLL++ + + + LHA+ EP+ F+ ++LL +Y + D+ + D++
Sbjct: 83 TYLNLLESCIDSGSIHLGRILHARFGLFPEPDV-FVETKLLSMYAKCGCLVDARKVFDSM 141
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I ++ E F M+ GV PD +FP +L+ C D G
Sbjct: 142 RE-RNLYTWSAMIGAYSRENRWREVSKLFRLMMEEGVLPDDFLFPKILQGCANCGDVETG 200
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ +I+LG+ L +N+++ +YA+ D
Sbjct: 201 KLIHSVVIKLGMSSCLRVSNSILAVYAKCGEWD 233
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%)
Query: 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
D + ++ A W ++I NG+ ++L F +M +GV P+ S + +C
Sbjct: 303 DLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSAC 362
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ L G VH+ +++G D+ N+L++MY++ ++
Sbjct: 363 SYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLE 404
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
W II QNG ++L F +M S P+ S+L +C L+ + +H C
Sbjct: 490 ATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPNSVTILSLLPACANLLGTKMVREIHGC 549
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++R +D NAL + YA+S ++
Sbjct: 550 VLRRNLDAIHAVKNALTDTYAKSGDI 575
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LK +++ +H + K+ F+ S ++ +Y ++ ++L L D +
Sbjct: 434 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRI 493
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII + N E+ F M+ GV PDH + +VL SC L G
Sbjct: 494 GGQ-ELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELG 552
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ +H II+ + D + ++ L++MYA+ NM
Sbjct: 553 KQIHGQIIKQEMLGDEFISSTLVDMYAKCGNM 584
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 27 HAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
HA +F T+ + +L Y + + LL + P V+W +++ Q G
Sbjct: 84 HAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDP-DVVSWNALLSGYCQRG 142
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ + + + M GV PD +LK+C L D G +HA ++ G+++D+ +
Sbjct: 143 MFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGS 202
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205
AL++MY + ++++ ++ F G G ERN +V + +AGC + E
Sbjct: 203 ALVDMYGKCRSLEDALH-FFHGMG-----------------ERN-SVSWGAVIAGCVQNE 243
Query: 206 K 206
+
Sbjct: 244 Q 244
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W +II QN +++ M+ SG+ D + SVLK+C L +G VH
Sbjct: 398 VSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGK 457
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQG 167
I+ G+ LD + ++ +++MY + + + ++DR G
Sbjct: 458 AIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGG 495
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L + ++ T KQ+H QI K F+ S L+ +Y + DS + + +
Sbjct: 535 TYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKV 594
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V+W ++I +G E+L F R + V P+H F +VL++C+
Sbjct: 595 Q-KLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACS 645
>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
Length = 1030
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR-FGESVHA 130
V+W SII ++NGL E+L F +MI P+++ +VL C+L+ R +G+ +H
Sbjct: 268 VSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHG 327
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G+++D+ +NALM Y++ M
Sbjct: 328 FVVRHGLEMDISVSNALMAHYSKVCEM 354
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH K + + ++ +Y + D+ + D + + V +I ++ G
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSC-SDAVCRNILITASSRAG 174
Query: 86 LLVESLTCFVRMIGSGV---YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
L + F M+ SGV P VL C L R G S+H +I+ G++ D
Sbjct: 175 LYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTL 234
Query: 143 TNNALMNMYAQ 153
+ NAL++MYA+
Sbjct: 235 SGNALVSMYAK 245
Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W + R QN L ++ F ++ G+ PD ++L +C L + + H ++
Sbjct: 606 WNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYML 665
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
R ++ D++ AL++ Y++ N+ + Y+ FQ
Sbjct: 666 RASLE-DIHLEGALLDAYSKCGNI-ANAYNLFQ 696
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
V + + +Q+HA++ + +L +RL+ +Y + D+ +LD + V+W
Sbjct: 46 VGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGM-PERNVVSW 104
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE--SVHACI 132
++I +QN E+ F+ M+ +G P+ SVL SCT + VHA
Sbjct: 105 TAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFA 164
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM 157
I+ +L ++ ++L++MYA+S+N+
Sbjct: 165 IKKNFELHMFVGSSLLDMYARSENI 189
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSII 78
+ Q KQ+HA K F+ S LL +Y + ++ + D L PA V ++ +I+
Sbjct: 154 QHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDML--PARDVVSYTTIL 211
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
T+ GL E+L F ++ G+ + F +L + + L +G+ VH I+R +
Sbjct: 212 SGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELP 271
Query: 139 LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ N+L++MY++ + +Y R V D +PER+
Sbjct: 272 FFMALQNSLIDMYSKCGKL---LYSR---------------RVFDNMPERS 304
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 31/173 (17%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT------PAPPVAWKS 76
KQ+HAQ+ + + + L+ +Y+ + LD KT V+W +
Sbjct: 360 GKQIHAQLVLLGLSSEDLVGNALIDMYSKCGM-------LDAAKTNFINKNDKTGVSWTA 412
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I C QNG E+L F M +G+ PD F S +K+ + L G +H+ +IR G
Sbjct: 413 MITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSG 472
Query: 137 VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+++ +AL++MY + +D + + D++PERN
Sbjct: 473 HMSSVFSGSALLDMYTKCGCLDEAL------------------QTFDEMPERN 507
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+QLH+ + ++ +S F S LL +Y + ++L D + ++W ++I
Sbjct: 461 GRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE-RNSISWNAVISAYA 519
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
G ++ F M+ G PD F SVL +C+
Sbjct: 520 HYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I C QN ++L FV M G PD SVL SC LV G VHA
Sbjct: 309 VSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAY 368
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I++ +D D + N L++MYA+ ++
Sbjct: 369 AIKVNIDNDDFVKNGLIDMYAKCDSL 394
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
A Q+H + K ++ + L+ Y + D+ L D L+ W +II +
Sbjct: 160 ALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTS-FTWTTIIAGYS 218
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G SL F +M V PD V SVL +C +L G+ +H ++R G+ +D+
Sbjct: 219 KQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVS 278
Query: 143 TNNALMNMYAQSQNMDM--HIYDR 164
N ++ Y + + + ++DR
Sbjct: 279 MVNGFIDFYFKCHKVQLGRKLFDR 302
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66
++LL S+ + Q+H I K F S L+ +Y+ + V D+ + + ++
Sbjct: 447 FVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQ 506
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
V W ++ TQ ESL + + S + P+ F +V+ + + + R G+
Sbjct: 507 DK-DIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQ 565
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
H +I++G D D + N L++MYA+S +++
Sbjct: 566 QFHNQVIKMGFDDDPFVANTLVDMYAKSGSIE 597
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+ L NLL++P K++H++I + FL++ LL Y+ NLV+ + L D
Sbjct: 43 RELANLLQSP----HIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFD 98
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDF 122
T+ + V W S++ T + +E+L FV+ + S P+ + SV+++CT
Sbjct: 99 TM-SHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGL 157
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H +++ G D+Y +L++ Y + +D
Sbjct: 158 NPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACID 193
>gi|31193917|gb|AAP44752.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108712239|gb|ABG00034.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 640
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ LLK S A+++H I KT E + + L+ +Y F + D+ + T
Sbjct: 357 TVSTLLKGSSSSLAFLHARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMDDAWAVATT 416
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + S+ R Q GL +L FVRM V D S L S L
Sbjct: 417 MAFIRDRFTYTSLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLASIET 476
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H+C ++LG+ D+ +N+L++MY++ + M
Sbjct: 477 GKQLHSCSVKLGLSSDISVSNSLIDMYSKCKCM 509
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDT 64
T LL S + Q QLHAQ+ + + L + LL +Y N N+ + L T
Sbjct: 154 TFAQLLSACASGRLHHQGTQLHAQLLRWGAGLNLVLKTALLHMYCNCGNMGYAHTVLHST 213
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+T V W +II ++G L +L F M + V P+ + +++ +C+ +
Sbjct: 214 PQTDV--VLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNAFTYAALISACSSFRALQP 271
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
G +HA + + G++ D NAL+++Y++S + + + F
Sbjct: 272 GRQIHARLFKFGLEHDTSVCNALVDLYSKSSSRLLDLLHTFHA 314
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+ S + +Q+HA++FK + + + L+ +Y+ + L LL T
Sbjct: 255 TYAALISACSSFRALQPGRQIHARLFKFGLEHDTSVCNALVDLYSKSS--SRLLDLLHTF 312
Query: 66 KTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
P V+W ++I +G E+ F +M SGV P+ ++LK + + F
Sbjct: 313 HAVDKPNVVSWTALIAGLACHGRDEEAFLAFSQMRLSGVLPNSFTVSTLLKGSSSSLAFL 372
Query: 124 FGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMD 158
+H I++ + LD N+L+++Y + MD
Sbjct: 373 HARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMD 408
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K++HA++ ++ + L + L+ +Y+ ++ + + D +++ P W ++I
Sbjct: 124 GKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQS-VDPSPWNAMISGLV 182
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q+G E+L F RM V D + ++L +C L D G +H G+D DL
Sbjct: 183 QHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLV 242
Query: 143 TNNALMNMYAQSQNMDM 159
A+ NMY++ + +D+
Sbjct: 243 VETAVFNMYSKCRQVDL 259
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + V+W S+I Q+G E+L + M GV PD + L +CT
Sbjct: 263 MFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYG 322
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H+ I + D++ + A++NMYA+ ++
Sbjct: 323 GSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELE 360
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L S ++ ++H++I ++ FL + ++ +Y + ++ + +
Sbjct: 310 TYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKM 369
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +++ Q G E+L ++RM+ G P L +C+ + + G
Sbjct: 370 RRK-NAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEG 428
Query: 126 ESVHACIIRLGVDLD-LYTNNALMNMYAQ 153
+++H+ I + L+ N+L+NMYA+
Sbjct: 429 KAIHSRIQATETLQNCLFLQNSLLNMYAK 457
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S++ +Q+G E L F +M V PD + S+L +C+ + G+ VHA
Sbjct: 74 ISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKEVHAR 130
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+ R D AL+NMY++
Sbjct: 131 VSRSRFKSDPALAAALINMYSK 152
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
F+ S L +Y+ L+ ++ + D + VAW ++I +NG L ++ F M
Sbjct: 307 FVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKNGSLEAAVLSFRDMKR 365
Query: 100 SG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G V D +VF SVL + L D +S+H C+ + G +L++ NAL++MYA+S +++
Sbjct: 366 EGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVE 425
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +++K Q QLHAQ+ KT F+ S L+ +Y L+ S+ L + +
Sbjct: 477 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 536
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ +AW ++I Q+G E++ F RMI SG+ P+H F S+L +C+
Sbjct: 537 EYRTD-IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS 587
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+ S+I + + E+L +V + GV P+ F S++K C + G +HA
Sbjct: 441 VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQ 500
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQ--NMDMHIYDRFQ 166
+I+ + D + + L++MY + ++ M +++ +
Sbjct: 501 VIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIE 537
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L D L P AW +I+ ++NGL E + + M GV PD VFP V ++C L
Sbjct: 418 ALFDKLSQPNV-FAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQL 476
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ G VH ++ G + DL N+L++MY++S ++
Sbjct: 477 LWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDV 514
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH+ K + + LL +Y + D+ L + L V W +I C QN
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGCVQN 321
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
GLL E+L F M+ SG PD S+L + T L + G+ VH IIR V +D +
Sbjct: 322 GLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLV 381
Query: 145 NALMNMYAQSQNMDM--HIYDRFQGFGFNGGREASVHEVLDKIPER 188
+AL+++Y + +++ ++YD + G VL+ + E+
Sbjct: 382 SALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEK 427
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++L SI +++H + + ++ S L+ +Y + S + +
Sbjct: 446 TVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKM 505
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I +QNG E+L F +M G+ ++ S L +C L +G
Sbjct: 506 SL-KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYG 564
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ +H II+ + D++ +AL++MYA+ NM++ +
Sbjct: 565 KEIHGVIIKGPIKADIFAESALIDMYAKCGNMELAL 600
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL++LL + Q K++H I + FL+S L+ IY V + L D
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAA 404
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V ++I NG+ ++L F ++ + P+ SVL +C + G
Sbjct: 405 RA-IDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLG 463
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+ +H ++R + Y +ALM+MYA+ +D+ Y
Sbjct: 464 QEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHY 500
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
++S L+ LL+ VS Q+HA+ + N L +RLL +Y D
Sbjct: 29 VSSADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRD 88
Query: 58 SLCLLDTLKTPAP--PVAWKSIIRCCTQNGLLVESLTCFVRMIG--SGVYPDHNVFPSVL 113
++ + L A + W +IR T G ++ +V+M + PD + P V+
Sbjct: 89 AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVV 148
Query: 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
KSC L G VH G+ D+Y +AL+ MY+ +
Sbjct: 149 KSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDA 189
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ + L S+ K++H I K F S L+ +Y + +L + + +
Sbjct: 547 TISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFM 606
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W SII +GL+ ES++ RM G PDH F +++ +C G
Sbjct: 607 PDKNE-VSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEG 665
Query: 126 ESVHACIIRLGVDLDLYTNNALM-NMYAQSQNMDMHI 161
+ C+ + + + A M ++Y++S +D I
Sbjct: 666 LQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAI 702
>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 837
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K+ S K +H + +T+E S FL + +L +Y + D+ + D + ++W +I
Sbjct: 104 KSLSDGKIIHELLRRTVEKPSVFLENTVLKMYCVCESLEDAYKVFDKM-IERNLISWGTI 162
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I ++GLL ++L+ F+ MI G+ P+ +++ +L+S G+ +H+ IR G+
Sbjct: 163 ISAYAEHGLLDKALSLFISMISLGINPNSSIYIDLLRSLLNPSLLGIGKQIHSHSIRSGL 222
Query: 138 DLDLYTNNALMNMYAQSQNMD 158
+ N A+ NMY + +D
Sbjct: 223 GAGVSINTAISNMYVRCGWLD 243
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW ++ TQ G +L F +M+ V D VF LK+C L + FG +H
Sbjct: 258 VAWTGLMVGYTQAGKQKNALDLFAKMVCEDVELDEYVFSISLKACAGLKELSFGRQIHGH 317
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
I++LG++ ++ L++ Y + + ++
Sbjct: 318 IVKLGLESEVSVGTPLVDFYIKCASFEL 345
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S Q+HA K S+ S ++ +Y+ + + +T+ P VAW +I+
Sbjct: 410 STGTQVHADAIKRSLIASQHGESAMITMYSRCGRLDYANLAFETIDGP-DAVAWTAIVAG 468
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
G E+L F RM GSG P+ F +VL +C+
Sbjct: 469 YAYQGNATEALKHFWRMQGSGARPNAITFIAVLTACS 505
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
LK +K S +Q+H I K + + + L+ Y + + + + P
Sbjct: 299 LKACAGLKELSFGRQIHGHIVKLGLESEVSVGTPLVDFYIKCASFELASKVFEGISEPND 358
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I Q G E+L F + + + + S+ ++C+ L DF G VHA
Sbjct: 359 -VSWSAMITGYCQIGEFEEALKIFESLRSNIENLNSFTYTSIFQACSALADFSTGTQVHA 417
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNMD 158
I+ + + +A++ MY++ +D
Sbjct: 418 DAIKRSLIASQHGESAMITMYSRCGRLD 445
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 17 IKTKSQAKQLHAQIFKT--LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
I+ Q +++HA + L+ ++ L + LL +Y + ++ + DT+ P +W
Sbjct: 100 IEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHP-DAFSW 158
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
S+I CT+N L+E+L F RM G+ P SVL +C + G+ +H+ +
Sbjct: 159 TSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDA 218
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
G + AL++MYA+ +++
Sbjct: 219 SGFHSSVLAQTALLDMYAKCGSLE 242
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
K A+++HA + + FL + L+ +Y V ++ + D ++ V+W S+
Sbjct: 65 KNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRN-KDMVSWTSL 123
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
I QN + E++ M+ P+ F S+LK+ D G +HA ++
Sbjct: 124 IAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDW 183
Query: 138 DLDLYTNNALMNMYAQSQNMDM 159
D+Y +AL++MYA+ MDM
Sbjct: 184 HEDVYVGSALLDMYARCGKMDM 205
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + Q+HA K ++ S LL +Y + + + D L
Sbjct: 154 TFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I + G +L F M +G H + S+ + + G
Sbjct: 214 DSKNG-VSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQG 272
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ VHA +I+ L + N +++MYA+S +M
Sbjct: 273 KWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSM 304
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
I Q K +HA + K+ + + F+ + +L +Y + D+ + + + V W
Sbjct: 264 AGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN-KDLVTW 322
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
S++ Q GL E+++ F M SG+Y + F +L +C+
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACS 365
>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 722
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+HA+ + L S+L+ Y N L++ SL + ++ P + + +I+R T+
Sbjct: 44 QQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTL-FNAILRNLTR 102
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G +L + +M+ ++PD +P VL+SC+ + FG ++H +++LG DL
Sbjct: 103 YGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVV 162
Query: 144 NNALMNMYAQ 153
AL MY +
Sbjct: 163 ATALAEMYEE 172
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T NLL+ + + AK +H + + + +L +Y+ + D+ L D
Sbjct: 228 TFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFD-- 285
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V W +I + G E L F M SG+ D V+ S L +
Sbjct: 286 KMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDW 345
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ HA I+R G D + +N+L++MY + + +D
Sbjct: 346 GKQTHAHILRNGSDSQVSVHNSLIDMYCECKILD 379
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + ++ + +K KQ HA I + + + + L+ +Y ++ DS C +
Sbjct: 329 TALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKIL-DSACKIFNW 387
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
T ++W ++I+ +NG + +L+ F +M G+ D + ++L + +
Sbjct: 388 MTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENV 447
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H ++LG+ N AL+ YA+ +++M
Sbjct: 448 KYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEM 481
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I GL E+L F RM G+ PD VL SC L D G+ VH+
Sbjct: 305 VSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSY 364
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--------MHIYDRFQ------GFGFNG--GRE 175
I + + D Y NAL++MYA+ ++D M D + GF +G R
Sbjct: 365 IDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRA 424
Query: 176 ASVHEVLDKIPERNGNVELSSGLAGCN 202
++ + ++ R +V L L+ C+
Sbjct: 425 LAIFSEMPRMGVRPDHVTLVGVLSACS 451
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------- 67
S K+ + KQ+HA I K S + + +L+ + L D+++
Sbjct: 35 SCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWYASSLA 94
Query: 68 ----PAPPVAWKSIIRC-CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
P + +II+ T N + + +M+ G+ PD P +LK+C+ F
Sbjct: 95 NFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAF 154
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
+HA I+ G+ +L+ N LM YA S
Sbjct: 155 IEALQIHAHSIKTGLSSNLFVKNTLMRFYAVS 186
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T TL LLK +A Q+HA KT ++ F+ + L+ Y + + D
Sbjct: 138 TYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFD 197
Query: 64 TLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ P ++W ++I+ ++ G E++ F RM D VL +C+ L DF
Sbjct: 198 --QGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDF 252
Query: 123 RFGESVHACIIR--LGVDLDLYTNNALMNMY 151
G+ + A + V D++ NAL++MY
Sbjct: 253 TLGKKILAYMDHHLFDVHSDVFLGNALLDMY 283
>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
Length = 836
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR-FGESVHA 130
V+W SII ++NGL E+L F +MI P+++ +VL C+L+ R +G+ +H
Sbjct: 133 VSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHG 192
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G+++D+ +NALM Y++ M
Sbjct: 193 FVVRHGLEMDISVSNALMAHYSKVCEM 219
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGV---YPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
+I ++ GL + F M+ SGV P VL C L R G S+H +I
Sbjct: 31 LITASSRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVI 90
Query: 134 RLGVDLDLYTNNALMNMYAQ 153
+ G++ D + NAL++MYA+
Sbjct: 91 KTGLEFDTLSGNALVSMYAK 110
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W + R QN L ++ F ++ G+ PD ++L +C L + + H ++
Sbjct: 471 WNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYML 530
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
R ++ D++ AL++ Y++ N+ + Y+ FQ
Sbjct: 531 RASLE-DIHLEGALLDAYSKCGNI-ANAYNLFQ 561
>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
Length = 930
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR-FGESVHA 130
V+W SII ++NGL E+L F +MI P+++ +VL C+L+ R +G+ +H
Sbjct: 268 VSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHG 327
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G+++D+ +NALM Y++ M
Sbjct: 328 FVVRHGLEMDISVSNALMAHYSKVCEM 354
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
LH K + + ++ +Y + D+ + D + + + V +I ++ G
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEM-SCSDAVCRNILITASSRAG 174
Query: 86 LLVESLTCFVRMIGSGV---YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
L + F M+ SGV P VL C L R G S+H +I+ G++ D
Sbjct: 175 LYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTL 234
Query: 143 TNNALMNMYAQ 153
+ NAL++MYA+
Sbjct: 235 SGNALVSMYAK 245
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W + R QN L ++ F ++ G+ PD ++L +C L + + H ++
Sbjct: 606 WNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYML 665
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166
R ++ D++ AL++ Y++ N+ + Y+ FQ
Sbjct: 666 RASLE-DIHLEGALLDAYSKCGNI-ANAYNLFQ 696
>gi|413955987|gb|AFW88636.1| hypothetical protein ZEAMMB73_169634 [Zea mays]
Length = 555
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W S+I ++ L E++ F R++ SG+ PD F SVL +C R+G VH
Sbjct: 152 ISWNSMIAGAVRSSHLKEAMNIFSRLVSSGLVPDCFSFSSVLSACARAGARRYGVWVHHL 211
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQG 167
+ LGV+++ ++AL++MYA+ +D+ I+++ +G
Sbjct: 212 MTELGVEMNHILSSALVDMYAKCGRIDVATEIFNKVKG 249
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 23/169 (13%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
+Q H+QI + + ++++L+ + NN +L + ++ L D++ P + +II+
Sbjct: 61 RQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAY-AIKLFDSIPNP-DAFFYNTIIKA 118
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
Q+ S+ + M+ V+P+ FPSV+++C + D + G+ +HA +++LG
Sbjct: 119 YLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAH 178
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ + N L++MYA RFQ F EA VL +PE+N
Sbjct: 179 VISLNNLIHMYA-----------RFQAF-----EEARC--VLYSMPEQN 209
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 36 PNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94
P F+ + L+ Y+ + LV ++ + ++ +W ++I Q ES F
Sbjct: 206 PEQNFISWTTLISGYSQWGLVDEAFRVFQSMPE-RNSASWNAMIAAYVQGNRFHESFALF 264
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
RM GV D V ++L +CT L G+ +H I + G++ D A+++MY +
Sbjct: 265 DRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKC 324
Query: 155 QNMDMHIYDRFQGFGFNG 172
+++ + + F+G G
Sbjct: 325 GSLEKAL-EVFKGLPHKG 341
>gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 706
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+Q+HA+ + L S+L+ Y N L++ SL + ++ P + + +I+R T+
Sbjct: 44 QQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTL-FNAILRNLTR 102
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G +L + +M+ ++PD +P VL+SC+ + FG ++H +++LG DL
Sbjct: 103 YGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVV 162
Query: 144 NNALMNMYAQ 153
AL MY +
Sbjct: 163 ATALAEMYEE 172
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T NLL+ + + AK +H + + + +L +Y+ + D+ L D
Sbjct: 228 TFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFD-- 285
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
K P V W +I + G E L F M SG+ D V+ S L +
Sbjct: 286 KMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDW 345
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ HA I+R G D + +N+L++MY + + +D
Sbjct: 346 GKQTHAHILRNGSDSQVSVHNSLIDMYCECKILD 379
>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL LL+ + + ++LH I K + F+ S L+ +Y LV ++ D +
Sbjct: 97 TLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEV 156
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W ++ C N L E+ F M D F S+L SC L G
Sbjct: 157 YCR-DLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLG 215
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H I+L DLD+ + L++MYA+S+N+D
Sbjct: 216 RQIHGLSIKLSFDLDVLVASGLVDMYAKSENID 248
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
+ KQ+H+ + K N L +++L +Y +FN H L D + V W ++I
Sbjct: 6 EGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHR---LFDEMHVR-NVVTWNTVI 61
Query: 79 ------RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
R + F +M+ V D +L++C L D G +H I
Sbjct: 62 CGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
++LG ++ + N+AL+++Y +
Sbjct: 122 VKLGFAVNSFVNSALVDLYGK 142
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +++++ S T + Q++A + K + + L+ Y+ + +L +T+
Sbjct: 299 TLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTV 358
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
P V W S+I + L S+ F M+ GV+PD VF VL +C+
Sbjct: 359 LEP-DLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACS 409
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++ + L+ S+ QLHA I K+ + LL +Y L++++
Sbjct: 306 SATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFF 365
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D + +++ +++ C QNG E+ F +M + PD S++ +C+ L
Sbjct: 366 DEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAAL 424
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF------------QGF 168
+ G+ H +I G+ L+ N+L++MYA+ +D+ ++D+ G+
Sbjct: 425 QHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGY 484
Query: 169 GFNG-GREAS 177
G +G G+EA+
Sbjct: 485 GIHGLGKEAT 494
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ PAP A+ ++IR + G ++ + M+ V P+ FP VLK+C+ LVD R
Sbjct: 59 RIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRA 118
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMY 151
G ++HA G+ DL+ + AL+++Y
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLY 145
>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 726
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 24 KQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQ+HA + + N F ++L+ Y+ FN + ++ + L+ P ++W I+R
Sbjct: 45 KQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEP-NTLSWNLIMRTH 103
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGVDLD 140
GL+ E+L + +M SGV D FP++ ++ +L D G+ VH ++LG D
Sbjct: 104 LDFGLVTEALLLYKKMRESGVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYD 163
Query: 141 LYTNNALMNMYAQ 153
LY N ++ +YA+
Sbjct: 164 LYFCNTMIEVYAR 176
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S++TL ++ I + ++LH+ K + L++ LL Y + +S+ L
Sbjct: 328 SSETLTLVISVFAKIGNLVEGEKLHSFSIKVGLCDD-VLLASLLDFYAKCGELRNSVQLF 386
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + WK ++ C QNG E++ F +M SGV + S++ +C+ L
Sbjct: 387 GEIPCRSSS-TWKLMMSGCIQNGYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSL 445
Query: 123 RFGESVHACIIR-----LGVDLDLYTNNALMNMYAQ 153
+ + +H + R L D +++ +++NMY +
Sbjct: 446 QLCKEIHGYLTRNFFYILEGD-NIHLGTSILNMYIR 480
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + ++ I+ ++HA++ + F+ S L+ +Y V ++ + D L
Sbjct: 223 TYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGL 282
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W +++ QNG ESL F M G P+ F +L +C + R G
Sbjct: 283 QNR-NVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG 341
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +HA + +LG + NAL+NMY++S ++D
Sbjct: 342 DLLHARVEKLGFKNHVIVRNALINMYSKSGSID 374
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV----AWKSI 77
+ Q H +FK +++ S L+ +Y+ + V +L +LDT+ P V ++ S+
Sbjct: 135 EGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTV--PGEHVNDIFSYNSV 192
Query: 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137
+ ++G E++ RM+ V DH + V+ C + D + G VHA ++R G+
Sbjct: 193 LNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGL 252
Query: 138 DLDLYTNNALMNMYAQ 153
D + + L++MY +
Sbjct: 253 MFDEFVGSMLIDMYGK 268
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQI--FKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
S +LI L++ + +AK +H + F+ +E + ++++L+ Y+ + +
Sbjct: 60 SETSLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQ 119
Query: 61 LLDTLKTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + P V +W ++ T+NG + + FV ++G + PD + +++C +
Sbjct: 120 VFDEI--PQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGV 177
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
GE VHA +I G + N +L+ MYA+
Sbjct: 178 DSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAK 211
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +HAQ+ + F+ + LL +Y + DS + ++L+ V+W ++I
Sbjct: 183 GEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENR-NQVSWNAMISGFV 241
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
NGL E+ F+RM+G + P+ F SV K+ L D G ++ +G+ +++
Sbjct: 242 SNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIH 301
Query: 143 TNNALMNMYAQ 153
AL++M+A+
Sbjct: 302 VGTALIDMFAK 312
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + L + +++ KQLH I+K+ L + L+ Y + L DT
Sbjct: 370 TYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVS-LCNALMDAYAKCGELDAMRKLFDTW 428
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + ++W +++ +Q+ ++L+ F +M G P+ F VL SC L +G
Sbjct: 429 E-ESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYG 487
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VH+ + G D + L++MYA+
Sbjct: 488 QQVHSLTCKTGFARDKCVESVLIDMYAK 515
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I +QNG +L + +M+ SGV PD F S++K+C+ L D G +HA
Sbjct: 7 VSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAH 66
Query: 132 IIRLGVDLDLYTNNALMNMYAQS 154
+++ + NAL++MY +S
Sbjct: 67 VLKSEFGAHIIAQNALISMYTKS 89
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%)
Query: 52 FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPS 111
+ + D++ + ++ A V+W +I+ C ++ E M S PD+ +
Sbjct: 153 YGELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTN 212
Query: 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VL + V G VH ++ G++ D N L+++YA+
Sbjct: 213 VLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAK 254
>gi|115456767|ref|NP_001051984.1| Os03g0861900 [Oryza sativa Japonica Group]
gi|113550455|dbj|BAF13898.1| Os03g0861900 [Oryza sativa Japonica Group]
Length = 651
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T+ LLK S A+++H I KT E + + L+ +Y F + D+ + T
Sbjct: 368 TVSTLLKGSSSSLAFLHARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMDDAWAVATT 427
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + S+ R Q GL +L FVRM V D S L S L
Sbjct: 428 MAFIRDRFTYTSLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLASIET 487
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +H+C ++LG+ D+ +N+L++MY++ + M
Sbjct: 488 GKQLHSCSVKLGLSSDISVSNSLIDMYSKCKCM 520
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDT 64
T LL S + Q QLHAQ+ + + L + LL +Y N N+ + L T
Sbjct: 165 TFAQLLSACASGRLHHQGTQLHAQLLRWGAGLNLVLKTALLHMYCNCGNMGYAHTVLHST 224
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+T V W +II ++G L +L F M + V P+ + +++ +C+ +
Sbjct: 225 PQTDV--VLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNAFTYAALISACSSFRALQP 282
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167
G +HA + + G++ D NAL+++Y++S + + + F
Sbjct: 283 GRQIHARLFKFGLEHDTSVCNALVDLYSKSSSRLLDLLHTFHA 325
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T L+ S + +Q+HA++FK + + + L+ +Y+ + L LL T
Sbjct: 266 TYAALISACSSFRALQPGRQIHARLFKFGLEHDTSVCNALVDLYSKSS--SRLLDLLHTF 323
Query: 66 KTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
P V+W ++I +G E+ F +M SGV P+ ++LK + + F
Sbjct: 324 HAVDKPNVVSWTALIAGLACHGRDEEAFLAFSQMRLSGVLPNSFTVSTLLKGSSSSLAFL 383
Query: 124 FGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMD 158
+H I++ + LD N+L+++Y + MD
Sbjct: 384 HARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMD 419
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,380,478,984
Number of Sequences: 23463169
Number of extensions: 136226007
Number of successful extensions: 272082
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3869
Number of HSP's successfully gapped in prelim test: 916
Number of HSP's that attempted gapping in prelim test: 252586
Number of HSP's gapped (non-prelim): 17707
length of query: 219
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 82
effective length of database: 9,144,741,214
effective search space: 749868779548
effective search space used: 749868779548
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 74 (33.1 bits)