BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041894
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 18/192 (9%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L TLK+P P +AWKS+IRC T L ++L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LLFKTLKSP-PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+D RFGESVH I+RLG+D DLYT NALMNMYA+ M G + SV
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM---------------GSKISVG 163
Query: 180 EVLDKIPERNGN 191
V D++P+R N
Sbjct: 164 NVFDEMPQRTSN 175
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ K++H + + + ++ S L+ +Y + DS + L ++W S++
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-DGISWNSLVAGY 318
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QNG E+L F +M+ + V P F SV+ +C L G+ +H ++R G ++
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378
Query: 142 YTNNALMNMYAQSQNMDM--HIYDRF 165
+ +AL++MY++ N+ I+DR
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRM 404
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V++ +II Q+G+ ++L M + + PD SVL + VD G+ +H
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+IR G+D D+Y ++L++MYA+S ++
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIE 294
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ P S+ + Q H QI K +L LL +Y N + ++ L
Sbjct: 634 TIVEACHKPESL---TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSE 690
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L +P V W ++ +QNG E+L + M GV PD F +VL+ C++L R
Sbjct: 691 LSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLRE 750
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G ++H+ I L DLD T+N L++MYA+ +M
Sbjct: 751 GRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL + Q H+ I K + F+ + L+ +Y + D+ + + +
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +II Q+ E+ F RM G+ D S LK+CT + G
Sbjct: 490 -CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQG 548
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ VH ++ G+D DL+T ++L++MY++
Sbjct: 549 KQVHCLSVKCGLDRDLHTGSSLIDMYSK 576
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+HA+ K ++ ++ S L+ +Y+ + + + + L+ V W ++IR NG
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEK-NDVFWNAMIRGYAHNG 407
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
+ + F+ M SG D F S+L +C D G H+ II+ + +L+ N
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 146 ALMNMYAQSQNMD--MHIYDR 164
AL++MYA+ ++ I++R
Sbjct: 468 ALVDMYAKCGALEDARQIFER 488
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
AW S++ + G + L FV + + ++P+ F VL +C + FG +H +
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
I++G++ + Y AL++MYA+
Sbjct: 187 IKMGLERNSYCGGALVDMYAK 207
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 49 YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108
Y + D+ L + +P VAW +I + G ++ F M S V +
Sbjct: 271 YIRLGKLKDARLLFGEMSSP-DVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRST 329
Query: 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
SVL + ++ + G VHA I+LG+ ++Y ++L++MY++ + M+
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + +L+ + + + + +H+ IF + L+ +Y + S + D +
Sbjct: 734 TFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEM 793
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + V+W S+I +NG ++L F M S + PD F VL +C+
Sbjct: 794 RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 23 AKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+Q+H + K LE NS + L+ +Y + + D+ + + + P V W +
Sbjct: 179 GRQIHCSMIKMGLERNS-YCGGALVDMYAKCDRISDARRVFEWIVDP-NTVCWTCLFSGY 236
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+ GL E++ F RM G PDH F +V+ +
Sbjct: 237 VKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINT 270
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + +S F +L+ Y++F SL + + W SIIR
Sbjct: 22 ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAF 81
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++NGL E+L + ++ S V PD FPSV+K+C L D G+ V+ I+ +G + DL
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 142 YTNNALMNMYAQ 153
+ NAL++MY++
Sbjct: 142 FVGNALVDMYSR 153
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 45 LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104
L+ +Y V DSL + ++ T V W ++I C + G L +M S V P
Sbjct: 449 LIDMYAKCGEVGDSLKIFSSMGT-GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVP 507
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
D F L C L R G+ +H C++R G + +L NAL+ MY++
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII Q+G L+E++ F M+ DH + ++ T L D +FG+ +H+
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ G+ +DL +NAL++MYA+
Sbjct: 434 GIKSGICIDLSVSNALIDMYAK 455
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
Q + LH K+ + + + L+ +Y F D+ + D + V++ ++I
Sbjct: 225 QGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV-RDSVSYNTMICGY 283
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
+ ++ ES+ F+ + PD SVL++C L D + ++ +++ G L+
Sbjct: 284 LKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342
Query: 142 YTNNALMNMYAQSQNM 157
N L+++YA+ +M
Sbjct: 343 TVRNILIDVYAKCGDM 358
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
++ QI + F+ + L+ +Y+ L+ + + D + V+W S+I + +G
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPV-RDLVSWNSLISGYSSHG 186
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E+L + + S + PD SVL + L+ + G+ +H ++ GV+ + NN
Sbjct: 187 YYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246
Query: 146 ALMNMY 151
L+ MY
Sbjct: 247 GLVAMY 252
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ K N+ + +S+L+ + +F + ++ + T++ P + W
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLI-W 102
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP VLKSC F+ G+ +H +++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLK 162
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LG DLDLY + +L++MY Q+ GR H+V DK P R+
Sbjct: 163 LGCDLDLYVHTSLISMYVQN------------------GRLEDAHKVFDKSPHRD 199
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G E+L F M+ + V PD + +V+ +C G VH
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I G +L NAL+++Y++ ++
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELE 318
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I T L E+L F M+ SG P+ S+L +C L G +H
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 132 IIRL--GVDLDLYTNNALMNMYAQSQNMD 158
I + GV +L++MYA+ +++
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
S K+Q KQ+HA++ S FLI++L+ ++F + + + D L P P + W
Sbjct: 30 SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL--PRPQIFPW 87
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IIR ++N ++L + M + V PD FP +LK+C+ L + G VHA + R
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG D D++ N L+ +YA+ + +
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRL 170
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK + + +HAQ+F+ F+ + L+ +Y + + + + L
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180
Query: 66 KTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P V+W +I+ QNG +E+L F +M V PD SVL + T L D +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ------------GFGF 170
G S+HA ++++G++++ +L MYA+ + ++D+ + G+
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 171 NG-GREA--SVHEVLDKIPERNGNVELSSGLAGCNK 203
NG REA HE+++K R + ++S ++ C +
Sbjct: 301 NGYAREAIDMFHEMINK-DVRPDTISITSAISACAQ 335
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
L+++L ++ Q + +HA + K LE LIS L +Y V + L D
Sbjct: 224 ALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS-LNTMYAKCGQVATAKILFDK 282
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+K+P + W ++I +NG E++ F MI V PD S + +C +
Sbjct: 283 MKSP-NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------------FQGFGF 170
S++ + R D++ ++AL++M+A+ +++ ++DR G+G
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGL 401
Query: 171 NG-GREA-SVHEVLDKIPERNGNVELSSGLAGCN 202
+G REA S++ +++ +V L CN
Sbjct: 402 HGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P + ++ S+I
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI--PDPTIYSFSSLIYA 90
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+D
Sbjct: 91 LTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRF 165
+ ++ +MY + M ++DR
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRM 177
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII C QNG +E+L F M +GV P+H PS+L +C + G S H
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+R+ + +++ +AL++MYA+ +++
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINL 441
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 29 QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---PAPPVAWKSIIRCCTQNG 85
++F + S LL Y + + + +L +++ A V+W I+ ++G
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145
E++ F ++ G PD SVL S G +H +I+ G+ D +
Sbjct: 232 YHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVIS 291
Query: 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVE 193
A+++MY +S H+Y F EA V RNG V+
Sbjct: 292 AMIDMYGKSG----HVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V ++ Q+HA + L+ +L+ Y+ FNL +++ +++
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN-SDI 106
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N L E + + RM+ G+ PD +PSVLK+C +D FG V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
H I LY NAL++MY + +NM + ++DR
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRM 205
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 36/170 (21%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H I + +S ++ + L+ +Y F + + L D + V+W ++I C
Sbjct: 163 GRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRM-FERDAVSWNAVINCYA 221
Query: 83 QNGLLVESLTCFVRMIGSGVYPD---HNV-----------------------FPSVL--- 113
G+ E+ F +M SGV N+ FP+ L
Sbjct: 222 SEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPV 281
Query: 114 ------KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
K+C+L+ R G+ +H I D N L+ MY++ +++
Sbjct: 282 AMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDL 331
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SII Q E+ M+ +G P+ S+L C + + + G+ H I+
Sbjct: 349 WNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYIL 408
Query: 134 RLGVDLDLYTN--NALMNMYAQS 154
R D YT N+L+++YA+S
Sbjct: 409 RRKCFKD-YTMLWNSLVDVYAKS 430
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ SQ +QLH++IFKT FL +L+F+Y + D+ + D + AW +
Sbjct: 94 RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTA-FAWNT 152
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I NG +L + M GV + FP++LK+C L D R G +H+ +++LG
Sbjct: 153 MIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+ NAL++MYA++ ++ ++D FQ G
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
LLK ++ +LH+ + K ++ F+++ L+ +Y + + + L D +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V W SI+ + +G +E+L F M +G P+ S L +C + G+ +H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 130 ACIIRLGV-DLDLYTNNALMNMYAQSQNM 157
A +++ +LY NAL+ MY + M
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKM 336
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 23 AKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
K++HA + K+ +S ++ + L+ +Y + + +L + A V W S+I+
Sbjct: 303 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNN-ADVVTWNSLIKGY 361
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
QN + E+L F MI +G D S++ + L + G +HA +I+ G D +L
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421
Query: 142 YTNNALMNMYAQ 153
N L++MY++
Sbjct: 422 QVGNTLIDMYSK 433
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I QN VE+L F + + D + S+L++ ++L + +H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
I+R G+ LD N L+++Y + +NM
Sbjct: 513 ILRKGL-LDTVIQNELVDVYGKCRNM 537
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I NG E++ F RM+ +G+ D +L + L G +H
Sbjct: 553 VSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCY 612
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ------------GFGFNGGREAS 177
++R G L+ A+++MYA ++ ++DR + +G +G +A+
Sbjct: 613 LLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAA 672
Query: 178 VHEVLDKIPERN 189
V E+ DK+ N
Sbjct: 673 V-ELFDKMRHEN 683
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 120
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 216
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK I S+ KQ+H QI K ++ + L+ +Y + + + + D + +
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I + G +L F R + PD SVL +C L G H
Sbjct: 217 L-VSWNSMIDALVRFGEYDSALQLF-REMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 274
Query: 130 ACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG-------------FGF-NG 172
A ++R + V +D+ N+L+ MY + ++ M FQG GF
Sbjct: 275 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRM-AEQVFQGMQKRDLASWNAMILGFATH 333
Query: 173 GREASVHEVLDKIPERNGNVELSS 196
GR D++ ++ NV +S
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNS 357
>sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protein At1g22830
OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1
Length = 703
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +QLHA + L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEI- 146
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G V
Sbjct: 147 LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVV 206
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H I +LY NAL++MY + +D+ ++DR
Sbjct: 207 HGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 49 YNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
Y + + ++ LLD + A V W +I C + G + +L C V M V
Sbjct: 260 YTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIG 319
Query: 106 HNVFPSVLKSCTLLVDFRFGESVHACIIR---LGVDLDLYTNNALMNMYAQSQNMDMHIY 162
+ LK+C+ + ++G+ H +IR D+D N+L+ MY++ ++ H +
Sbjct: 320 SVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID-NVRNSLITMYSRCSDL-RHAF 377
Query: 163 DRFQ 166
FQ
Sbjct: 378 IVFQ 381
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W SII N E+ M+ SG +P+H S+L + + + G+ H I+
Sbjct: 391 WNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYIL 450
Query: 134 RLGVDLD-LYTNNALMNMYAQS 154
R D L N+L++MYA+S
Sbjct: 451 RRQSYKDCLILWNSLVDMYAKS 472
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 49/230 (21%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN------------ 53
TL+ +LK S S KQ+H Q+ K + + S LL++Y N
Sbjct: 141 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGL 200
Query: 54 -------------------LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94
++ D+L L ++ + V+W ++I+ QNGL E++ CF
Sbjct: 201 DDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS--VSWAAMIKGLAQNGLAKEAIECF 258
Query: 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154
M G+ D F SVL +C L G+ +HACIIR +Y +AL++MY +
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318
Query: 155 QNMDMH--IYDRFQ------------GFGFNGGREASVHEVLDKIPERNG 190
+ + ++DR + G+G G E +V LD +R+G
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM--QRSG 366
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ KQ+HA I +T + ++ S L+ +Y +H + + D +K V+W +++
Sbjct: 288 EGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGY 346
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
Q G E++ F+ M SG+ PDH + +C + G H I G+ +
Sbjct: 347 GQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYV 406
Query: 142 YTNNALMNMYAQSQNMD 158
+N+L+ +Y + ++D
Sbjct: 407 TVSNSLVTLYGKCGDID 423
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + ++ + + Q H + + + + + L+ +Y + DS L + +
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W +++ Q G VE++ F +M+ G+ PD V+ +C+
Sbjct: 433 NV-RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS 483
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
M + T LK + + AK +H QI KT L+P R + LL +Y + D
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP--RVGVG-LLQLYTQLGDMSD 300
Query: 58 SLCLLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ + + + K P W +I QNG E++ F+RM + V P+ S+L C
Sbjct: 301 AFKVFNEMPKNDVVP--WSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358
Query: 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+ GE +H ++++G DLD+Y +NAL+++YA+ + MD +
Sbjct: 359 AIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAV 403
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+ LK VS+ LH+ I K ++ F+ + L+ Y+ V + + + +
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V W I+ C +NG +SL M +G P++ F + LK+ L F F + V
Sbjct: 211 -DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168
H I++ LD L+ +Y Q +M D F+ F
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMS----DAFKVF 305
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L K +QLH + K ++ + L+ +Y + ++ L L
Sbjct: 350 TLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I G ++ + F + + V F S L +C L G
Sbjct: 410 SSK-NEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLG 468
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
VH I+ + +N+L++MYA+
Sbjct: 469 VQVHGLAIKTNNAKKVAVSNSLIDMYAK 496
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 105 DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
D + + ++L+ C D +++H I++ G LDL+ N L+N Y ++
Sbjct: 48 DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKA---------- 97
Query: 165 FQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLA 199
G + + D++PERN V L+ G A
Sbjct: 98 --------GFDKDALNLFDEMPERNNVSFVTLAQGYA 126
>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3
SV=1
Length = 527
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T + +LL+ S++ ++H I L N+ + S+L+ +Y + +
Sbjct: 89 LTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHE 148
Query: 61 LLDTL-KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ D + K + P AW S+I + G +++ + +M GV PD FP VLK+C +
Sbjct: 149 VFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGI 208
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ GE++H +++ G D+Y NAL+ MYA+
Sbjct: 209 GSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAK 242
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ +GLL E+L F M+ +G+ PD SVL ++ F+ G +H
Sbjct: 262 VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLAR---VLSFKHGRQLHGW 318
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+IR G++ +L NAL+ +Y++
Sbjct: 319 VIRRGMEWELSVANALIVLYSK 340
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+++HA + KT + +L +RLL Y + + D+ +LD + V+W ++I +
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV-VSWTAMISRYS 129
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
Q G E+LT F M+ S P+ F +VL SC G+ +H I++ D ++
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++L++MYA++ G+ E+ + +PER+
Sbjct: 190 VGSSLLDMYAKA------------------GQIKEAREIFECLPERD 218
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L + + KQ+H I K + F+ S LL +Y + ++ + + L
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+ +II Q GL E+L F R+ G+ P++ + S+L + + L G
Sbjct: 215 -PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+ H ++R + N+L++MY++ N+
Sbjct: 274 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 305
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSL 59
+ S L LLKN +S + + +HA+I KTL+ P FL + L+ +Y+ + H
Sbjct: 3 LLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLD--HPES 60
Query: 60 CLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118
L TPA V+W S+I QNG +L F M GV P+ FP K+
Sbjct: 61 ARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 120
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178
L G+ +HA ++ G LD++ + +MY +++ D
Sbjct: 121 LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRD------------------DA 162
Query: 179 HEVLDKIPERN 189
++ D+IPERN
Sbjct: 163 RKLFDEIPERN 173
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
K S++ KQ+HA K F+ +Y L D+ L D +
Sbjct: 115 FKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNL 174
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
W + I +G E++ F+ +P+ F + L +C+ + G +H
Sbjct: 175 ET-WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHG 233
Query: 131 CIIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G D D+ N L++ Y + + +
Sbjct: 234 LVLRSGFDTDVSVCNGLIDFYGKCKQI 260
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
QLH + ++ + + L+ Y + S + + T V+W S++ QN
Sbjct: 230 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA-VSWCSLVAAYVQN 288
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
++ ++R V + SVL +C + G S+HA ++ V+ ++
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 348
Query: 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+AL++MY + ++ D Q F D++PE+N
Sbjct: 349 SALVDMYGKCGCIE----DSEQAF--------------DEMPEKN 375
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S++ QNG ++S+ FV M G+ D F +LK C+ L D G +H
Sbjct: 146 VSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGI 205
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
++R+G D D+ +AL++MYA+ G R V IPE+N +
Sbjct: 206 VVRVGCDTDVVAASALLDMYAK------------------GKRFVESLRVFQGIPEKN-S 246
Query: 192 VELSSGLAGC 201
V S+ +AGC
Sbjct: 247 VSWSAIIAGC 256
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T +LK ++ S Q+H + + S LL +Y +SL +
Sbjct: 181 RTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQG 240
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V+W +II C QN LL +L F M +++ SVL+SC L + R
Sbjct: 241 IPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 299
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G +HA ++ D A ++MYA+ NM
Sbjct: 300 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNM 332
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107
+Y + ++ + D ++ V+W +II QNG E+L FV M+ S + PD
Sbjct: 426 MYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEF 484
Query: 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F S+LK+CT +G +H+ I++ G+ + +L++MY++
Sbjct: 485 TFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W SII ++ F RM+ G+ PD + +VL +C L G+ +HA
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
+I+ + D+Y + L++MY++
Sbjct: 629 VIKKELQSDVYICSTLVDMYSK 650
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L ++ + KQ+HAQ+ K + ++ S L+ +Y+ +HDS + +
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK- 663
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V W ++I +G E++ F RMI + P+H F S+L++C
Sbjct: 664 SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
S ++L++ ++ QLHA K+ + + L +Y + + D+ L
Sbjct: 279 VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQIL 338
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
D + ++ ++I +Q ++L F R++ SG+ D V ++C L+
Sbjct: 339 FDNSENLNRQ-SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKG 397
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181
G ++ I+ + LD+ NA ++MY + Q + + F+ F R+A
Sbjct: 398 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA----EAFRVFDEMRRRDAVSWNA 453
Query: 182 LDKIPERNGN 191
+ E+NG
Sbjct: 454 IIAAHEQNGK 463
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N++K ++ + + +H + K+ + S L+ +Y FNL +SL + D +
Sbjct: 109 TFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEM 168
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P VA W ++I C Q+G ++L F RM SG P+ + +C+ L+
Sbjct: 169 --PERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLER 226
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G+ +H ++ G +LD Y N+AL++MY + +++
Sbjct: 227 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEV 261
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S+I+ G + RMI G P S+L +C+ + G+ +H
Sbjct: 275 VAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGY 334
Query: 132 IIRLGVDLDLYTNNALMNMY 151
+IR V+ D+Y N +L+++Y
Sbjct: 335 VIRSVVNADIYVNCSLIDLY 354
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
M S+K L L + S K+ + K +H +I L L+ +Y +
Sbjct: 1 MESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARH 60
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLL 119
+ + + W S++ ++N + ++L F R++ + PD FP+V+K+ L
Sbjct: 61 VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGAL 120
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
G +H +++ G D+ ++L+ MYA +F F E S+
Sbjct: 121 GREFLGRMIHTLVVKSGYVCDVVVASSLVGMYA-----------KFNLF------ENSL- 162
Query: 180 EVLDKIPERN 189
+V D++PER+
Sbjct: 163 QVFDEMPERD 172
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W +I G +++ + +M+ GV PD F SVL +C+ L G+ +H I
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 133 IRLGVDLDLYTNNALMNMYAQSQN 156
++ D +AL++MY++ N
Sbjct: 437 SESRLETDELLLSALLDMYSKCGN 460
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 18/193 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + + KQ+H I ++ L+S LL +Y+ ++ + +++
Sbjct: 412 TFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSI 471
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +I +G E+L F M G+ PD +VL +C
Sbjct: 472 PKK-DVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACG-------- 522
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA +I G+ + + + Y ++ H G GR +E++ +
Sbjct: 523 ---HAGLIDEGLKF----FSQMRSKYGIEPIIE-HYSCMIDILG-RAGRLLEAYEIIQQT 573
Query: 186 PERNGNVELSSGL 198
PE + N EL S L
Sbjct: 574 PETSDNAELLSTL 586
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 21/184 (11%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK 66
+L+ V + S KQ+HA+I K + +R ++ ++L+ Y + + + L L+
Sbjct: 75 EILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLR 134
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
+W +II + GL +L FV M+ + ++PD+ V P+V K+C L RFG
Sbjct: 135 V-RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186
VH +++ G++ ++ ++L +MY + +D +V D+IP
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGKCGVLD------------------DASKVFDEIP 235
Query: 187 ERNG 190
+RN
Sbjct: 236 DRNA 239
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
N+ K ++K + +H + K+ + F+ S L +Y ++ D+ + D +
Sbjct: 178 NVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI-PD 236
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
VAW +++ QNG E++ F M GV P + L + + G+
Sbjct: 237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQS 296
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQ 153
HA I G++LD +L+N Y +
Sbjct: 297 HAIAIVNGMELDNILGTSLLNFYCK 321
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QNG E++ +M SG+ P+ L +C L G ++H
Sbjct: 512 ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGY 571
Query: 132 IIR-LGVDLDLYTNNALMNMYAQSQNMD 158
IIR L + +L++MYA+ +++
Sbjct: 572 IIRNLQHSSLVSIETSLVDMYAKCGDIN 599
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
SQ KQ+H +I K N + L+ +L+ + ++F + + + L++P+ W +IR
Sbjct: 34 SQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPST-FTWNLMIRS 92
Query: 81 CTQNGLLVESLTCFV-RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+ N E+L F+ MI D FP V+K+C R G VH I+ G
Sbjct: 93 LSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFN 152
Query: 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
D++ N LM++Y F G+ S +V DK+P R+
Sbjct: 153 DVFFQNTLMDLY------------------FKCGKPDSGRKVFDKMPGRS 184
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLL 119
+ ++ P W ++IR + G + + + + M SG V PD + +P ++K+ T +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM 134
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
D R GE++H+ +IR G +Y N+L+++YA N G AS +
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYA------------------NCGDVASAY 176
Query: 180 EVLDKIPERN 189
+V DK+PE++
Sbjct: 177 KVFDKMPEKD 186
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
T T L+K ++ + +H+ + ++ + ++ + LL +Y N V + + D
Sbjct: 121 THTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180
Query: 64 TLKTPAPP-VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P VAW S+I +NG E+L + M G+ PD S+L +C +
Sbjct: 181 --KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VH +I++G+ +L+++N L+++YA+
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYAR 269
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100
L + L+ Y LV ++ L D + VAW ++I + + CF M+
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPD-RDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 101 GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
G P+ SVLKSC + +G VH +++LG++ LY +NA+MNMYA
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYA 157
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +L+ +I + +QLH +IF+ + L + L+ +Y + DS + +
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W S++ +G E++ F +M+ SG+ PD VF +VL +C
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACR-------- 426
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
HA ++ G L N + + Y N D IY+ G+ +E+++++
Sbjct: 427 ---HAGLVEKG----LKYFNVMESEYG--INPDRDIYNCVVDLLGRAGKIGEAYELVERM 477
Query: 186 PERNGNVELSSGLAGC 201
P + + L C
Sbjct: 478 PFKPDESTWGAILGAC 493
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
++ SI + + KQ+HA + K ++ +++ +L +Y + ++ ++
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-D 278
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W ++I ++ E+L F R G P+ F S++ +C + G+ +H
Sbjct: 279 LITWNTLISELERSDS-SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHG 337
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ------SQNMDMHIYDR---------FQGFGFNG-GR 174
I R G + ++ NAL++MYA+ SQ + I DR G+G +G G
Sbjct: 338 RIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGA 397
Query: 175 EASVHEVLDKI 185
EA E+ DK+
Sbjct: 398 EAV--ELFDKM 406
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++ T T LK ++ K +H + + + + L +Y + D LC
Sbjct: 206 LSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLC 265
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L + + + V+W S+I + G V+++ F++M S V P+ F S+ +C L
Sbjct: 266 LFENM-SERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 324
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
+GE +H ++ LG++ L +N++M MY+ N+
Sbjct: 325 RLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNL 361
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ LHA KT +S ++ S LL +Y + D C + + V W +II
Sbjct: 127 GESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKI-DKSCRVFSEMPFRNAVTWTAIITGLV 185
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
G E LT F M S D F LK+C L ++G+++H +I G L
Sbjct: 186 HAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLC 245
Query: 143 TNNALMNMYAQSQNM 157
N+L MY + M
Sbjct: 246 VANSLATMYTECGEM 260
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T I+LL+ PV + ++ Q+ +PNS R L N + D
Sbjct: 17 TSISLLQKPV----EENIVRISNQVMVKFDPNSHL---RSLINAGNLRAARQ---VFD-- 64
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCF--VRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
K P V+W SII+ E+L F +R++ V PD +V VLK+C +
Sbjct: 65 KMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNI 124
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+GES+HA ++ + +Y ++L++MY + +D
Sbjct: 125 AYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKID 160
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLD 63
+T ++ S+ +QLH + +S + + ++ +Y+ NLV S+ L
Sbjct: 311 QTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASV-LFQ 369
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
++ ++W +II Q G E F M SG P S+L +
Sbjct: 370 GMRCR-DIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIE 428
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G VHA + G++ + ++L+NMY++
Sbjct: 429 GGRQVHALALCFGLEQNSTVRSSLINMYSK 458
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H + KT + F+ S L+ +Y+ L +L + ++ T VAW S+I C ++N
Sbjct: 497 QVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMISCYSRN 555
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144
L S+ F M+ G++PD SVL + + G+S+H +RLG+ D +
Sbjct: 556 NLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLK 615
Query: 145 NALMNMYAQS--QNMDMHIYDRFQ------------GFGFNGG--REASVHEVLDKIPER 188
NAL++MY + +I+ + Q G+G +G S+ + + K E
Sbjct: 616 NALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES 675
Query: 189 NGNVELSSGLAGCN 202
+V S ++ CN
Sbjct: 676 PDDVTFLSLISACN 689
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL N++ + + K +HA++FK ++ + S LL +Y+ D+ + ++
Sbjct: 375 TLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSM 434
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFR 123
+ VAW S+I +NG E+L F M + PD ++ SV +C L R
Sbjct: 435 EEK-DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALR 493
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
FG VH +I+ G+ L+++ ++L+++Y++
Sbjct: 494 FGLQVHGSMIKTGLVLNVFVGSSLIDLYSK 523
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTL 118
C+ D+ +PA S IR Q G +++L + + GS + FPS+LK+C+
Sbjct: 16 CVADSYISPASI---NSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSA 72
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
L + +G+++H ++ LG D + +L+NMY + +D + ++D +
Sbjct: 73 LTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWS 122
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%)
Query: 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79
+ + KQ+H + + FL + L+ +Y F L D+ + ++ + V W +I
Sbjct: 186 REEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIV 245
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+G+ SL ++ + V F L +C+ + FG +H ++++G+
Sbjct: 246 GFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN 305
Query: 140 DLYTNNALMNMYAQ 153
D Y +L++MY++
Sbjct: 306 DPYVCTSLLSMYSK 319
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N ++ + LL +Y+ +V ++ + + + W +++
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEI-WNAMVAAYA 349
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+N +L F M V PD +V+ C++L + +G+SVHA + + +
Sbjct: 350 ENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTST 409
Query: 143 TNNALMNMYAQ 153
+AL+ +Y++
Sbjct: 410 IESALLTLYSK 420
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCL 61
TS T +LLK ++ S K +H + F+ + L+ +Y + ++ +
Sbjct: 58 TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQV 117
Query: 62 LDTLKTPAPPVA------WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
D V+ W S+I + E + CF RM+ GV PD V+
Sbjct: 118 FDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSV 177
Query: 116 CTLLVDFRF--GESVHACIIRLGVDLDLYTNNALMNMY 151
+FR G+ +H ++R +D D + AL++MY
Sbjct: 178 MCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMY 215
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
P W ++R ++ LL E++ +V MI G+ PD+ FP++LK+ L D G+ +HA
Sbjct: 62 PEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHA 121
Query: 131 CIIRLGVDLDLYT-NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
+ + G +D T N L+N+Y + + FG +V++V D+I ERN
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGD-----------FG-------AVYKVFDRISERN 163
Query: 190 GNVELSSGLAGCNKFEK 206
V +S ++ FEK
Sbjct: 164 -QVSWNSLISSLCSFEK 179
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+HA + E NS F+I+ L+ +Y + S LL + V W +++
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGG-RDLVTWNTVLSSLC 278
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDL 141
QN L+E+L M+ GV PD SVL +C+ L R G+ +HA ++ G +D +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338
Query: 142 YTNNALMNMY 151
+ +AL++MY
Sbjct: 339 FVGSALVDMY 348
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 23 AKQLHAQIFK--TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
K+LHA K +L+ NS F+ S L+ +Y N V + D + + W ++I
Sbjct: 321 GKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL-WNAMIAG 378
Query: 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
+QN E+L F+ M S G+ + V+ +C F E++H +++ G+D
Sbjct: 379 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 438
Query: 140 DLYTNNALMNMYAQSQNMD--MHIYDRFQ 166
D + N LM+MY++ +D M I+ + +
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKME 467
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 30/200 (15%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ ++ T+ ++ V S+ + +H + K RF+ + L+ +Y+ + ++
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNG------LLVESLTCFVRMIGSG-----VYPDHNVF 109
+ ++ V W ++I + LL+ + R + G + P+
Sbjct: 462 IFGKMED-RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520
Query: 110 PSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169
++L SC L G+ +HA I+ + D+ +AL++MYA+ + M
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS--------- 571
Query: 170 FNGGREASVHEVLDKIPERN 189
+V D+IP++N
Sbjct: 572 ---------RKVFDQIPQKN 582
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTL 65
LLK ++ KQ+HA ++K +S + + L+ +Y +F V+ + D +
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK---VFDRI 159
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL---VDF 122
+ V+W S+I +L F M+ V P SV+ +C+ L
Sbjct: 160 -SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G+ VHA +R G +L+ + N L+ MY +
Sbjct: 219 MMGKQVHAYGLRKG-ELNSFIINTLVAMYGK 248
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S ++H +I K + + + LL +Y + D+ + D + VAW +++
Sbjct: 118 SVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVR-DLVAWSTLVSS 176
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
C +NG +V++L F M+ GV PD SV++ C L R SVH I R DLD
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLD 236
Query: 141 LYTNNALMNMYAQSQNM 157
N+L+ MY++ ++
Sbjct: 237 ETLCNSLLTMYSKCGDL 253
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL ++L + I + K +H + + L+PN L L+ +Y + D +L
Sbjct: 305 TLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRV 364
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + VAW S+I G+++++L F +M+ + PD S + +C
Sbjct: 365 V-SDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPL 423
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +IR V D + N+L++MY++S ++D
Sbjct: 424 GKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVD 456
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
KQ+H + +T + + F+ + L+ +Y+ V + + + +K + V W S++ +
Sbjct: 424 GKQIHGHVIRT-DVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSV-VTWNSMLCGFS 481
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
QNG VE+++ F M S + + F +V+++C+ + G+ VH +I G+ DL+
Sbjct: 482 QNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLF 540
Query: 143 TNNALMNMYAQSQNMD 158
T+ AL++MYA+ +++
Sbjct: 541 TDTALIDMYAKCGDLN 556
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+I++++ + A+ +H QI + + L + LL +Y+ + S + + +
Sbjct: 204 TMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKI 263
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W ++I + ++L F MI SG+ P+ SVL SC L+ R G
Sbjct: 264 -AKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREG 322
Query: 126 ESVHACIIRLGVDLDLYT-NNALMNMYAQ 153
+SVH +R +D + + + AL+ +YA+
Sbjct: 323 KSVHGFAVRRELDPNYESLSLALVELYAE 351
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 25 QLHAQIFKTLEPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
QLHA + T L +++L+ Y S + + P + +I+C
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYP-DSFMYGVLIKCNVW 77
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLDLY 142
LL ++ + R++ VFPSVL++C + G VH II+ GVD D
Sbjct: 78 CHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAV 137
Query: 143 TNNALMNMYAQSQNM 157
+L+ MY Q+ N+
Sbjct: 138 IETSLLCMYGQTGNL 152
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 14 PVSIKTKSQAKQ------LHAQIFKTLEPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK 66
PV++K + ++ +H + K + S + S L+++Y + ++L + D L+
Sbjct: 64 PVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123
Query: 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFG 125
P V W S++ +NG +++ F RM+ S V PD +++ +CT L + R G
Sbjct: 124 KP-DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLG 182
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155
VH +IR G DL N+L+N YA+S+
Sbjct: 183 RCVHGFVIRRGFSNDLSLVNSLLNCYAKSR 212
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI L+ + + +H + + N L++ LL Y +++ L +
Sbjct: 165 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 224
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
++W ++I C QNG E+L F M+ G P+ VL++C D G
Sbjct: 225 -AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 283
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ--SQNMDMHIYDR------------FQGFGFN 171
H IR G++ ++ + AL++MY + S ++ R GF N
Sbjct: 284 RKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLN 343
Query: 172 GGREASVHEVLDKIPERN 189
G S+ E + E N
Sbjct: 344 GMAHRSIEEFSIMLLENN 361
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W ++++ ++ E L F M PD+ P LK+C L + +GE +H +
Sbjct: 28 WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVK 87
Query: 134 R-LGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
+ + + DLY ++L+ MY + M + ++D +
Sbjct: 88 KDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCF-VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V+W ++I T NG+ S+ F + ++ + PD + VL SC+ L + H+
Sbjct: 331 VSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHS 390
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
+I+ G D + + +L+ +Y++
Sbjct: 391 YVIKYGFDSNPFIGASLVELYSR 413
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ + A V W +I Q+GL+ ESLT F MI SGV PD F S+L S + + +
Sbjct: 299 MMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEY 358
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+ +H I+R + LD++ +AL++ Y + + + M
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM 393
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
Q KQ+HA + + R+L +Y +F+ LD ++ P W SII
Sbjct: 53 QGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRP--WNSII 110
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+NGLL ++L + +M+ GV PD + FP ++K+C L +F+ + + + LG+D
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170
Query: 139 LDLYTNNALMNMYAQSQNMDM--HIYDR 164
+ + ++L+ Y + +D+ ++DR
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFDR 198
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I C Q+ ++ F +M SG+ D + L +C L FG+++H
Sbjct: 508 VSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGF 567
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
+I+ + D+Y+ + L++MYA+ N+
Sbjct: 568 MIKHSLASDVYSESTLIDMYAKCGNL 593
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LL + + KQ+H I + FL S L+ Y V + +
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC 401
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V + ++I NGL ++SL F ++ + P+ S+L +L+ + G
Sbjct: 402 NS-VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLG 460
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ 166
+H II+ G D A+++MYA+ M++ I++R
Sbjct: 461 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS 503
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ ++S K +H + K + + S L+ +Y + ++ + T+K V+W S
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNI-VSWNS 613
Query: 77 IIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFG 125
II C +G L +SL F M+ SG+ PD F ++ SC + D G
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDFRFGESVH 129
V W ++ + G L + F M + P+ F VL C LL+D G +H
Sbjct: 205 VIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDL--GVQLH 262
Query: 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
++ GVD + N+L++MY++ D
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101
++R L + + L+ D+L L D + A W +I+ T GL +E++ + RM+ +G
Sbjct: 67 LTRALRGFADSRLMEDALQLFDEM-NKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG 125
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V D +P V+KS + G+ +HA +I+LG D+Y N+L+++Y +
Sbjct: 126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMK 177
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
++K+ I + + K++HA + K + ++ + L+ +Y D+ + + +
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP-ER 194
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129
V+W S+I G SL F M+ G PD S L +C+ + + G+ +H
Sbjct: 195 DIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH 254
Query: 130 ACIIRLGVDL-DLYTNNALMNMYAQ 153
+R ++ D+ ++++MY++
Sbjct: 255 CHAVRSRIETGDVMVMTSILDMYSK 279
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W SII QNG +L F + S + PD S+L + + G +HA
Sbjct: 397 ISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAY 456
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
I++ + N+L++MYA +++
Sbjct: 457 IVKSRYWSNTIILNSLVHMYAMCGDLE 483
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 17 IKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
+ + K++H ++ +E +++ +L +Y+ + V + + + + VAW
Sbjct: 244 VYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAWN 302
Query: 76 SIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+I C +NG + ++ CF +M +G+ PD ++L + +L G ++H +R
Sbjct: 303 VMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMR 358
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
G + AL++MY + + I+DR
Sbjct: 359 RGFLPHMVLETALIDMYGECGQLKSAEVIFDR 390
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL-CLL 62
+ T+ ++L + S+ +++HA I K+ ++ +++ L+ +Y + D+ C
Sbjct: 431 STTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFN 490
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LV 120
L V+W SII +G S+ F MI S V P+ + F S+L +C++ +V
Sbjct: 491 HILLKDV--VSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMV 548
Query: 121 D--FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
D + + ES+ G+D + ++++ ++ N
Sbjct: 549 DEGWEYFESMKR---EYGIDPGIEHYGCMLDLIGRTGN 583
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRC 80
Q +Q+HA + T SR L+++L+ + + + + L L P P + S+I+
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLF--LSVPLPDDFLFNSVIKS 81
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
++ L + + + RM+ S V P + F SV+KSC L R G+ VH + G LD
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141
Query: 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
Y AL+ Y++ +M+ G R +V D++PE++
Sbjct: 142 TYVQAALVTFYSKCGDME-------------GAR-----QVFDRMPEKS 172
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
VAW S++ QNGL E++ F +M SG PD F S+L +C G VH
Sbjct: 174 VAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
II G+DL++ AL+N+Y++ G EV DK+ E N
Sbjct: 234 IISEGLDLNVKLGTALINLYSRC------------------GDVGKAREVFDKMKETN 273
>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470
OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
Length = 501
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T LL+ K ++ K++HAQ+F + +L +LL +Y + + L +
Sbjct: 109 ETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRS 168
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
LK + W ++I Q GL E L + M + + PD F SV ++C+ L
Sbjct: 169 LKI-RDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEH 227
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ HA +I+ + ++ ++AL++MY F+ F+ G H V D+
Sbjct: 228 GKRAHAVMIKRCIKSNIIVDSALVDMY-------------FKCSSFSDG-----HRVFDQ 269
Query: 185 IPERN 189
+ RN
Sbjct: 270 LSTRN 274
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 16/149 (10%)
Query: 25 QLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
Q+H I L+P+++ + + LF + + V + D+++ P V W S+IR T+
Sbjct: 23 QVHGSLIVSGLKPHNQLINAYSLFQRQDLSRV-----IFDSVRDPGV-VLWNSMIRGYTR 76
Query: 84 NGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
GL E+L F M G+ PD F LK+C +DF+ G +H I +G++ D+Y
Sbjct: 77 AGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVY 136
Query: 143 TNNALMNMYAQSQNM--------DMHIYD 163
AL+ MY +++++ MH+ D
Sbjct: 137 IGTALVEMYCKARDLVSARQVFDKMHVKD 165
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I Q G E+++ F M+ + P+ SVL+ C + R G+S+H
Sbjct: 367 VSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCY 426
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ ++ +L T A+++MYA+
Sbjct: 427 AIKADIESELETATAVISMYAK 448
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 68/150 (45%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
++T++ +L+ ++ ++ QI K + + L+ ++ + + ++ L D
Sbjct: 502 SRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFD 561
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
V+W ++ +G E++ F +M P+ F +++++ L R
Sbjct: 562 KCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALR 621
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
G SVH+ +I+ G N+L++MYA+
Sbjct: 622 VGMSVHSSLIQCGFCSQTPVGNSLVDMYAK 651
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL ++L+ + K +H K + + ++ +Y +L + L
Sbjct: 403 TLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERL 462
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
VA+ ++ + TQ G ++ + M GV PD +L++C D+ G
Sbjct: 463 PIK-DAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARG 521
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V+ II+ G D + + +AL+NM+ +
Sbjct: 522 SCVYGQIIKHGFDSECHVAHALINMFTK 549
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84
Q+H+ I K+ + ++ S L+ +Y+ V+D+ + D + V+W S+I C QN
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM-GDRNVVSWNSLITCFEQN 231
Query: 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR-LGVDLDLYT 143
G VE+L F M+ S V PD SV+ +C L + G+ VH +++ + D+
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 144 NNALMNMYAQ 153
+NA ++MYA+
Sbjct: 292 SNAFVDMYAK 301
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I TQNG E+L+ F + V P H F ++LK+C L + G H
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 132 IIRLGVDL------DLYTNNALMNMYAQ 153
+++ G D++ N+L++MY +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 37/177 (20%)
Query: 17 IKTKSQA---KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV- 72
IK+K A + +HA + K+ N F+ +RL+ Y+ + D + D K P +
Sbjct: 30 IKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFD--KMPQRNIY 87
Query: 73 AWKSIIRCCTQNGLL-------------------------------VESLTCFVRMIGSG 101
W S++ T+ G L E+L F M G
Sbjct: 88 TWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEG 147
Query: 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ F SVL +C+ L D G VH+ I + D+Y +AL++MY++ N++
Sbjct: 148 FVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQI------FKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
+ N+LK + Q H + F++ E + F+ + L+ +Y V +
Sbjct: 388 SFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY 447
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ + V+W ++I QNG E+L F M+ SG PDH VL +C
Sbjct: 448 LVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC 503
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++L + ++K K +H + K+ ++ + LL +Y +LV DSL + +
Sbjct: 269 TYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCI 328
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ P V+W S+I QNG +L F +M+ + P+ S L+ C+ L F G
Sbjct: 329 EYP-NQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEG 387
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H + + G D D Y + L+++Y + DM
Sbjct: 388 RQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDM 421
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TL ++ K + + +A++ H + LE ++ F+ S L+ +Y F ++ +LD
Sbjct: 167 TLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDR 226
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ V ++I +Q G E++ F M+ V P+ + SVL SC L D
Sbjct: 227 VE-EKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGN 285
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ +H +++ G + L + +L+ MY + +D
Sbjct: 286 GKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 319
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+T+T LL+ + ++ S K + A + K+ P + S+L+ + +
Sbjct: 62 LTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFP-AEISGSKLVDASLKCGDIDYARQ 120
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
+ D + + V W S+I ++ E++ + MI + V PD SV K+ + L
Sbjct: 121 VFDGM-SERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLS 179
Query: 121 DFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+ + H + LG+++ +++ +AL++MY + F REA +
Sbjct: 180 LEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVK----------------FGKTREAKL- 222
Query: 180 EVLDKIPERN 189
VLD++ E++
Sbjct: 223 -VLDRVEEKD 231
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T + LL++ + + + LHA+ EP+ F+ ++LL +Y + D+ + D++
Sbjct: 83 TYLKLLESCIDSGSIHLGRILHARFGLFTEPDV-FVETKLLSMYAKCGCIADARKVFDSM 141
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ W ++I ++ E F M+ GV PD +FP +L+ C D G
Sbjct: 142 R-ERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAG 200
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+ +H+ +I+LG+ L +N+++ +YA+ +D
Sbjct: 201 KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELD 233
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 62 LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121
++T A W ++I NG+ ++L F +M +GV P+ S + +C+ L
Sbjct: 308 METFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKV 367
Query: 122 FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G VH+ +++G D+ N+L++MY++ ++
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLE 404
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K W II QNG E+L F +M S P+ S+L +C L+ +
Sbjct: 484 KVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMV 543
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+H C++R +D NAL + YA+S +++
Sbjct: 544 REIHGCVLRRNLDAIHAVKNALTDTYAKSGDIE 576
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +L + ++ KQ+H + +T + ++S L+ +Y+ + S C+ D
Sbjct: 418 TLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDC 477
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRF 124
W S+I N L ++L F RM + V P+ F +VL SC+ L
Sbjct: 478 INELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLH 537
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G H +++ G D + AL +MY + +D
Sbjct: 538 GRQFHGLVVKSGYVSDSFVETALTDMYCKCGEID 571
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I + G ++L + RM+ G P SVL +C+ ++D FG H
Sbjct: 104 VSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGV 163
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
++ G+D +++ NAL++MYA+
Sbjct: 164 AVKTGLDKNIFVGNALLSMYAK 185
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD-SLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+ H KT + F+ + LL +Y + D + + ++L P V++ ++I +
Sbjct: 159 RCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP-NEVSYTAVIGGLAR 217
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVL------KSCTLLVDF---RFGESVHACIIR 134
++E++ F M GV D ++L + C L + G+ +H +R
Sbjct: 218 ENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALR 277
Query: 135 LGVDLDLYTNNALMNMYAQSQNMD 158
LG DL+ NN+L+ +YA++++M+
Sbjct: 278 LGFGGDLHLNNSLLEIYAKNKDMN 301
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 68 PAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126
P P V AW +++ + E+++ F +M + PD +L SC L G+
Sbjct: 377 PQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGK 436
Query: 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
+H +IR + + + + L+ +Y++ + M++
Sbjct: 437 QIHGVVIRTEISKNSHIVSGLIAVYSECEKMEI 469
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQN-------------MDMHIYDRFQGFGFN 171
G+ +H I+R+G+ D Y N L+++Y + + D++ ++ F F
Sbjct: 25 GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84
Query: 172 GGREASVHEVLDKIPERN 189
G EV D +PER+
Sbjct: 85 VGDLGEACEVFDGMPERD 102
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W+++I+ +NG +E+L F+ M GV P S+L C L G+ VHA +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRF 165
+R D+D+Y + LM MY + + I+DRF
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TLI++L S+ + KQ+HAQ+ + ++ S L+ +Y + S + D
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCT 117
+ + W SII +GL E+L F M SG P+ F + L +C+
Sbjct: 393 PS-KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACS 444
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 2 TSTKTLINLLKNPVSI----KTKSQAKQLHAQ-IFKTLEPNSRFLISRLLFIYNNFNLV- 55
T T+++ N +SI KT Q KQLH+Q I + + PN F + LF++ L
Sbjct: 25 TITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTF--QKKLFVFWCSRLGG 82
Query: 56 HDSLCLLDTLKTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114
H S +K P P V W ++I+ ++ E + ++ M+ GV PD + FP +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 115 SCTLLVD---FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164
L D G+ +H +++ G+ +LY NAL+ MY+ MDM ++DR
Sbjct: 143 G--LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR 195
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +I + G ESL F M +G+ PD SVL +C L GE +
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393
Query: 132 IIRLGVDLDLYTNNALMNMY--------AQSQNMDMHIYDRFQ------GFGFNG-GREA 176
I + + D+ NAL++MY AQ DM D+F G NG G+EA
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
K+LH + K ++ ++ + L+ +Y+ L+ + + D + +W +I
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR-RCKEDVFSWNLMISGYN 212
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ ES+ V M + V P VL +C+ + D + VH + + L
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 143 TNNALMNMYAQSQNMDMHI 161
NAL+N YA MD+ +
Sbjct: 273 LENALVNAYAACGEMDIAV 291
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 19/129 (14%)
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L L P P W +IR + + +S++ +++M+ G+ PDH +P ++KS + L
Sbjct: 64 FLSKLSDP-PNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLS 122
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
+ + G S+H +++ G++ DL+ N L++MY ++ +AS +
Sbjct: 123 NRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD------------------QASARK 164
Query: 181 VLDKIPERN 189
+ D++P +N
Sbjct: 165 LFDEMPHKN 173
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+++++ + ++ K +H I P + L + L+ +Y + D+ +
Sbjct: 243 TMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRA 302
Query: 66 KT-PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ W +II +G + ESL F +M S + PD F +L +C+
Sbjct: 303 SVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 355
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV-FPSVLKSCTLLVDFRFGESVHA 130
V W S+I + G ++L F +M+ G + V SV+ +C L G++VH
Sbjct: 206 VTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHR 265
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
I+ + + L + +L++MYA+
Sbjct: 266 YILDVHLPLTVILQTSLIDMYAK 288
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96
N L +R++ +Y DS + D L++ W ++I ++N L E L F+
Sbjct: 118 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSK-NLFQWNAVISSYSRNELYDEVLETFIE 176
Query: 97 MIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152
MI + + PDH +P V+K+C + D G +VH +++ G+ D++ NAL++ Y
Sbjct: 177 MISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYG 233
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H + KT F+ + L+ Y V D+L L D + V+W S+IR + NG
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM-PERNLVSWNSMIRVFSDNG 267
Query: 86 LLVESLTCFVRMI---GSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
ES M+ G G + PD +VL C + G+ VH ++L +D +L
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 327
Query: 142 YTNNALMNMYAQ 153
NNALM+MY++
Sbjct: 328 VLNNALMDMYSK 339
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ +LL +K+ K++H I + F+ +L +Y + + L D +
Sbjct: 498 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 557
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ + V+W ++I QNG +L F +M+ G+ V +C+LL R G
Sbjct: 558 EDKSL-VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
HA ++ ++ D + +L++MYA++ ++
Sbjct: 617 REAHAYALKHLLEDDAFIACSLIDMYAKNGSI 648
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++I Q+ SL ++M SG+ PD S+L +C+ L R G+ VH I
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522
Query: 133 IRLGVDLDLYTNNALMNMY 151
IR ++ DL+ +++++Y
Sbjct: 523 IRNWLERDLFVYLSVLSLY 541
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
++ HA K L + F+ L+ +Y + S + + LK + +W ++I
Sbjct: 616 GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTA-SWNAMIMGYG 674
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+GL E++ F M +G PD F VL +C
Sbjct: 675 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T++++L+ S+ K+LHAQI K + ++ S L+++Y D+ +L L
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V+W ++I C+ G E+L MI GV P+ + S LK+C G
Sbjct: 447 PSR-DVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIG 505
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
S+H+ + +++ +AL++MYA+ G + V D +
Sbjct: 506 RSIHSIAKKNHALSNVFVGSALIHMYAKC------------------GFVSEAFRVFDSM 547
Query: 186 PERN 189
PE+N
Sbjct: 548 PEKN 551
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+Q+H + K N + S L++ Y + +L D ++ ++W ++I C+
Sbjct: 203 GRQVHGNMVKVGVGN-LIVESSLVYFYAQCGELTSALRAFDMMEEK-DVISWTAVISACS 260
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142
+ G ++++ F+ M+ P+ S+LK+C+ RFG VH+ +++ + D++
Sbjct: 261 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVF 320
Query: 143 TNNALMNMYAQ 153
+LM+MYA+
Sbjct: 321 VGTSLMDMYAK 331
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK K +Q+H+ + K + F+ + L+ +Y + D + D +
Sbjct: 286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
+ V W SII + G E+++ F M + ++ S+L++C + G
Sbjct: 346 -SNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG 404
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
+ +HA II+ ++ ++Y + L+ +Y + G VL ++
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKC------------------GESRDAFNVLQQL 446
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHDAD 216
P R+ V ++ ++GC+ S GH+++
Sbjct: 447 PSRD-VVSWTAMISGCS-------SLGHESE 469
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82
+ +H+ K ++ F+ S L+ +Y V ++ + D++ V+WK++I
Sbjct: 505 GRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEK-NLVSWKAMIMGYA 563
Query: 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+NG E+L RM G D +F ++L +C D E+V +
Sbjct: 564 RNGFCREALKLMYRMEAEGFEVDDYIFATILSTCG---DIELDEAVES 608
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHA 130
V W ++I + GL E+ F + G+ + + +F +L C+ +F G VH
Sbjct: 149 VTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHG 208
Query: 131 CIIRLGVDLDLYTNNALMNMYAQ 153
++++GV +L ++L+ YAQ
Sbjct: 209 NMVKVGVG-NLIVESSLVYFYAQ 230
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S T++ +L I + KQLH+ + K F + L+ +Y + D+
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
D L+ + W S+I QN E+L + RM +G+ P+ SVLK+C+ L
Sbjct: 381 DCLQERDVAL-WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATL 439
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G+ VH I+ G L++ +AL MY++ +++
Sbjct: 440 ELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLE 475
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%)
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+ W +++ +QNG +E++ F RM +G+ P VL +C+ + G+ +H+
Sbjct: 287 SITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346
Query: 131 CIIRLGVDLDLYTNNALMNMYAQS 154
+++LG + L+ AL++MYA++
Sbjct: 347 FLLKLGFERHLFATTALVDMYAKA 370
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL + K S+++ + +Q HA + K ++ + L+ +Y LV D L + +
Sbjct: 120 TLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYM 179
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCF---VRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
W +++ G + E++ F +R G D+ VF +VL S +
Sbjct: 180 P-ERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDY-VFTAVLSSLAATIYV 237
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
G +H I+ G+ + +NAL+ MY++ ++++
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLN 273
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 72 VAWKSIIRCCTQNGLLVESLTC---FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
V+W S+I +QNG + S T F M + P+ + K+ + L G
Sbjct: 81 VSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQA 140
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQS 154
HA ++++ D+Y + +L+ MY ++
Sbjct: 141 HALVVKMSSFGDIYVDTSLVGMYCKA 166
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ ++LK S+ T KQ+H K + S L +Y+ + D +
Sbjct: 425 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFR-- 482
Query: 66 KTPAPPV-AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+TP V +W ++I + NG E+L F M+ G+ PD F +++ +C+
Sbjct: 483 RTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85
+H +I ++ +++ + LL +Y NF V + + D +K ++W ++I +NG
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNR-DVISWNTMISGYYRNG 197
Query: 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI--IRLGVDLDLYT 143
+ ++L F M+ V DH S+L C L D G +VH + RLG +++
Sbjct: 198 YMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEV-- 255
Query: 144 NNALMNMYAQSQNMD--MHIYDRFQ 166
NAL+NMY + MD ++DR +
Sbjct: 256 KNALVNMYLKCGRMDEARFVFDRME 280
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
++S K +LL + + ++ S+ K LH + T S ++S L Y + +
Sbjct: 12 LSSVKQYQSLLNHFAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALCGHITYARK 70
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV--YPDHNVFPSVLKSCTL 118
L + + + +++ +IR + GL ++++ F+RM+ GV PD +P V K+
Sbjct: 71 LFEEMP-QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGE 129
Query: 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
L + G VH I+R D Y NAL+ MY ++M
Sbjct: 130 LKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEM 170
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII 133
W +II C QN L+ ++L F RM V P+ S+L + L D R ++H +
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 134 RLGVDLDLYTNNALMNMYAQSQNMD 158
+ G L L+++Y++ ++
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLE 472
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL +LL ++ QA +H + KT +S + L+ +Y+ + + + + +
Sbjct: 422 TLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGI 481
Query: 66 KTPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ V W ++I +G +L F+ M+ SGV P+ F S L +C+
Sbjct: 482 QEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACS 536
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T ++LL+ S+ + +KQ+H +FK F S L+ +Y+N + DS + D +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
K V W S+ Q E+L F+ + S PD F +++ + L + G
Sbjct: 516 KVK-DLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ H +++ G++ + Y NAL++MYA+
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAK 602
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V W ++I C + G SL F +++ V PD + +VL +C++L G+ +HA
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAH 274
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
I+R G+++D N L++ Y + GR + H++ + +P +N
Sbjct: 275 ILRYGLEMDASLMNVLIDSYVKC------------------GRVIAAHKLFNGMPNKN 314
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W +++ QN L E++ F M G+ PD S+L SC L FG VHA
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 132 IIRLGVDLDLYTNNALMNMYAQ 153
I+ + D Y N+L++MYA+
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAK 397
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESV-- 128
V+W +++ C +G+ ESL F+ + P+ + S +++C+ L D R V
Sbjct: 111 VSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGL-DGRGRWMVFQ 169
Query: 129 -HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+ +++ G D D+Y L++ Y + N+D Y R V D +PE
Sbjct: 170 LQSFLVKSGFDRDVYVGTLLIDFYLKDGNID---YARL---------------VFDALPE 211
Query: 188 RNGNVELSSGLAGCNKFEKRVVS 210
++ V ++ ++GC K + VS
Sbjct: 212 KS-TVTWTTMISGCVKMGRSYVS 233
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 86/212 (40%), Gaps = 20/212 (9%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N++ ++ + ++ H Q+ K + ++ + LL +Y D+ D+
Sbjct: 557 TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS- 615
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W S+I +G ++L +M+ G+ P++ F VL +C+ G
Sbjct: 616 AASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185
++R G++ + ++++ ++ GR E+++K+
Sbjct: 676 LKQFELMLRFGIEPETEHYVCMVSLLGRA------------------GRLNKARELIEKM 717
Query: 186 PERNGNVELSSGLAGCNKFEKRVVSAGHDADL 217
P + + S L+GC K V A H A++
Sbjct: 718 PTKPAAIVWRSLLSGCAK-AGNVELAEHAAEM 748
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
++L + S+ Q+HA K N ++ + L+ +Y + + D+ + D
Sbjct: 355 SILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF-AA 413
Query: 69 APPVAWKSIIRCCTQNGL---LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
A V + ++I ++ G L E+L F M + P F S+L++ L
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYA 152
+ +H + + G++LD++ +AL+++Y+
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYS 500
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 19/75 (25%)
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
VH II G++LD Y +N L+N+Y+++ M +Y R +V +K+PE
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGM---VYAR---------------KVFEKMPE 107
Query: 188 RNGNVELSSGLAGCN 202
RN V S+ ++ CN
Sbjct: 108 RN-LVSWSTMVSACN 121
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
+T I+L+ S ++ +Q +++H I + L + +L +Y + D+ + D
Sbjct: 68 RTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDF 127
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
+ V++ S+I +QNG E++ +++M+ + PD F S++K+C D
Sbjct: 128 MP-ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGL 186
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G+ +HA +I+L L NAL+ MY + M
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQM 219
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
S ++L+ P+++ SQ Q+H+ I K + + LL +Y + ++ L
Sbjct: 373 SLRSLLCAQTKPMAL---SQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLF 429
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+ + A V+W +I+ C Q+ VE L F M+ S PDH ++L+ C +
Sbjct: 430 EDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
+ G VH ++ G+ + + N L++MYA+
Sbjct: 490 KLGSQVHCYSLKTGLAPEQFIKNGLIDMYAK 520
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 23 AKQLHAQIFKTLEPNSRFLISR-LLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
KQLHAQ+ K LE +S + L+ +Y FN + D+ + + ++W SII
Sbjct: 187 GKQLHAQVIK-LESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK-DLISWSSIIAGF 244
Query: 82 TQNGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
+Q G E+L+ M+ GV+ P+ +F S LK+C+ L+ +G +H I+ + +
Sbjct: 245 SQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGN 304
Query: 141 LYTNNALMNMYAQ 153
+L +MYA+
Sbjct: 305 AIAGCSLCDMYAR 317
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T+ NLL+ V I + Q+H KT +F+ + L+ +Y + + + D++
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
V+W ++I Q+G E+L F M +G+ P+H F VL +C+
Sbjct: 535 DNR-DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAP 70
LK S+ Q+H K+ + L +Y ++ + + D ++ P
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP-D 335
Query: 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130
+W II NG E+++ F +M SG PD S+L + T + G +H+
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395
Query: 131 CIIRLGVDLDLYTNNALMNMY 151
II+ G DL N+L+ MY
Sbjct: 396 YIIKWGFLADLTVCNSLLTMY 416
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWK 75
++ +++ Q H F L P FL++R + Y V D+ L + + +W
Sbjct: 75 ALVVQARKVQSHLVTFSPLPPI--FLLNRAIEAYGKCGCVDDARELFEEMPERDGG-SWN 131
Query: 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
++I C QNG+ E F RM GV F VLKSC L++D R +H +++
Sbjct: 132 AVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKY 191
Query: 136 GVDLDLYTNNALMNMYAQSQNM 157
G ++ +++++Y + + M
Sbjct: 192 GYSGNVDLETSIVDVYGKCRVM 213
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83
+QLH + K + L + ++ +Y ++ D+ + D + P+ V+W I+R +
Sbjct: 182 RQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSD-VSWNVIVRRYLE 240
Query: 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143
G E++ F +M+ V P ++ SV+ +C+ + G+ +HA ++L V D
Sbjct: 241 MGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVV 300
Query: 144 NNALMNMYAQSQNMD--MHIYDR------------FQGFGFNG-GREASVHEVLDKIPER 188
+ ++ +MY + ++ ++D+ G+ +G REA E+ D +PER
Sbjct: 301 STSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREA--RELFDLMPER 358
Query: 189 N 189
N
Sbjct: 359 N 359
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
TL+ +L I KQ H I++ + + + LL +Y + + +
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V+W +++ + G ++L+ F M P ++L C + G
Sbjct: 457 SELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLG 515
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161
+++H +IR G +D+ A+++MY++ + D I
Sbjct: 516 KAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAI 551
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116
+ W SIIR C +NG E F+ + GV PDH F +L++C
Sbjct: 563 ILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHA-QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
TLI L+K ++ K +H I ++ S +L + ++ +Y L+ ++ L +T
Sbjct: 212 TLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFET 271
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
V W ++I + VE+ F +M+ + P+ ++L SC+ L R
Sbjct: 272 -SVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRH 330
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+SVH +IR G+++D + ++MYA+ N+ M V D
Sbjct: 331 GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQM------------------ARTVFDM 372
Query: 185 IPERN 189
+PERN
Sbjct: 373 MPERN 377
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
++W S+I NGL E+L CF +M V P+ F S+L +C+
Sbjct: 379 ISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACS 424
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY---NNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +Q+HA++ + L S L Y N + S + K +W
Sbjct: 18 KTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRH--SW 75
Query: 75 KSIIR-------CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
+I+ CC + LL+ + +R GV + VF +K+C L G
Sbjct: 76 NTILSGYSKSKTCCYSDVLLLYNR---MRRHCDGVDSFNLVFA--IKACVGLGLLENGIL 130
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187
+H ++ G+D D Y +L+ MYAQ M+ S +V D+IP
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTME------------------SAQKVFDEIPV 172
Query: 188 RN 189
RN
Sbjct: 173 RN 174
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78
T+++ ++HA + + S L++ + I + + + + ++ P V + ++I
Sbjct: 16 TRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV-FNAMI 74
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138
+C + G +ESL+ F M G++ D + +LKSC+ L D RFG+ VH +IR G
Sbjct: 75 KCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFH 134
Query: 139 LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
++ +Y +GGR +V D++ ERN
Sbjct: 135 RLGKIRIGVVELYT------------------SGGRMGDAQKVFDEMSERN 167
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W S+I ++ G E+L F MI G PD +VL L G+ +H+
Sbjct: 200 VSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHST 259
Query: 132 IIRLGVDLDLYT-NNALMNMYAQSQNMD 158
G+ D T NAL++ Y +S +++
Sbjct: 260 AESSGLFKDFITVGNALVDFYCKSGDLE 287
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80
S + LH I K + F+ S L+ ++ D+L + D + T + W SII
Sbjct: 176 SDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVT-GDAIVWNSIIGG 234
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
QN +L F RM +G + SVL++CT L G H I++ D D
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQD 292
Query: 141 LYTNNALMNMYAQSQNMD 158
L NNAL++MY + +++
Sbjct: 293 LILNNALVDMYCKCGSLE 310
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99
FL++ L+ +Y FNL++D+ L D + ++W ++I ++ + ++L V M+
Sbjct: 97 FLVNVLINMYVKFNLLNDAHQLFDQM-PQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155
Query: 100 SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
V P+ + SVL+SC + D R +H II+ G++ D++ +AL++++A+
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAK 206
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
+ TL ++L+ + Q H I K L + L+ +Y + D+L
Sbjct: 257 IAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALR 314
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117
+ + +K + W ++I QNG E+L F RM SG P++ VL +C+
Sbjct: 315 VFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T +LLK +++ S K++H FK + ++ S L+ Y+ F V D+ + D L
Sbjct: 163 TFPSLLKGSDAMEL-SDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDEL 221
Query: 66 KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFG 125
V W +++ +Q ++L F +M GV + SVL + T+ D G
Sbjct: 222 PDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNG 281
Query: 126 ESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
S+H ++ G D+ +NAL++MY +S+ ++
Sbjct: 282 RSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLE 314
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+ ++I NG ++++ + M +G+ PD FPS+LK + + + VH
Sbjct: 128 GYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAM-ELSDVKKVHGLA 186
Query: 133 IRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNV 192
+LG D D Y + L+ Y++ +++ +V D++P+R+ +V
Sbjct: 187 FKLGFDSDCYVGSGLVTSYSKFMSVE------------------DAQKVFDELPDRDDSV 228
Query: 193 ---ELSSGLAGCNKFE 205
L +G + +FE
Sbjct: 229 LWNALVNGYSQIFRFE 244
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII---- 78
+ +H KT + + + L+ +Y + ++ + + + W S++
Sbjct: 281 GRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMD-ERDLFTWNSVLCVHD 339
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV- 137
C +G +L F RM+ SG+ PD +VL +C L R G +H +I G+
Sbjct: 340 YCGDHDG----TLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLL 395
Query: 138 ---DLDLYTNNALMNMYAQSQNM 157
+ + +N+LM+MY + ++
Sbjct: 396 NRKSSNEFIHNSLMDMYVKCGDL 418
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 7 LINLLKNPVSIKTKSQAKQLHAQIFK-TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
++LL+ + + + +H + K +L +S ++ L +Y + N V + + D +
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61
Query: 66 KTP-APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P P+AW +IR N ++L + +M+ SGV P +P VLK+C L
Sbjct: 62 PHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDD 121
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184
G+ +H+ + D+Y AL++ YA+ ++M I +V D+
Sbjct: 122 GKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAI------------------KVFDE 163
Query: 185 IPERN 189
+P+R+
Sbjct: 164 MPKRD 168
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+++ S+I C N ES F M SG+ PD VL +C+ L G S H
Sbjct: 375 ISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGY 434
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRFQ------------GFGFNG-GREA 176
+ G ++ NALM+MY + +D+ ++D GFG +G G+EA
Sbjct: 435 CVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEA 494
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69
+LK ++ K +H+ + + ++ + L+ Y + ++ + D +
Sbjct: 109 VLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMP-KR 167
Query: 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHN----VFPSVLKSCTLLVDFRF 124
VAW ++I + + L + + F+ M G+ P+ + +FP++ ++ L R
Sbjct: 168 DMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGAL----RE 223
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164
G++VH R+G DL ++++YA+S+ + IY R
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI---IYAR 260
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG----VYPDHNVFPSVLKSCTLLVDFRFGES 127
V W ++I +N ++ E+ F +M+ + V P +L C D G
Sbjct: 272 VTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP--VAIGLILMGCARFGDLSGGRC 329
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQ 153
VH ++ G LDL N +++ YA+
Sbjct: 330 VHCYAVKAGFILDLTVQNTIISFYAK 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,209,814
Number of Sequences: 539616
Number of extensions: 3243674
Number of successful extensions: 6737
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5798
Number of HSP's gapped (non-prelim): 830
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)