Query 041894
Match_columns 219
No_of_seqs 121 out of 1254
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.2E-39 7E-44 293.4 18.6 197 2-218 187-427 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-38 2.4E-43 296.3 20.7 216 2-219 505-756 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.7E-38 3.6E-43 294.5 21.4 216 1-219 285-591 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.5E-38 7.6E-43 293.0 20.1 215 2-218 435-685 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 5.4E-38 1.2E-42 291.1 20.7 198 2-219 185-391 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-37 4.7E-42 281.4 19.2 215 2-218 121-361 (697)
7 PF13041 PPR_2: PPR repeat fam 99.6 6.8E-16 1.5E-20 93.2 5.4 50 69-118 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.5 9.6E-15 2.1E-19 88.2 5.2 50 2-51 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 1E-12 2.2E-17 111.8 15.6 210 5-218 108-354 (389)
10 PRK11788 tetratricopeptide rep 99.4 2.9E-11 6.4E-16 102.8 16.2 202 3-206 68-297 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.3 5.5E-10 1.2E-14 103.2 19.1 199 4-206 601-819 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.3 6.5E-10 1.4E-14 102.7 19.1 196 6-207 671-887 (899)
13 KOG4422 Uncharacterized conser 99.2 4.3E-10 9.4E-15 94.1 13.6 181 5-207 117-328 (625)
14 PF12854 PPR_1: PPR repeat 99.1 2E-10 4.3E-15 63.2 3.7 34 135-186 1-34 (34)
15 PF12854 PPR_1: PPR repeat 99.1 3.1E-10 6.7E-15 62.4 4.3 34 33-66 1-34 (34)
16 KOG4422 Uncharacterized conser 99.0 2.8E-09 6E-14 89.3 10.9 119 36-158 204-329 (625)
17 TIGR02521 type_IV_pilW type IV 98.9 3.2E-07 6.9E-12 71.3 18.4 182 5-206 32-218 (234)
18 KOG4318 Bicoid mRNA stability 98.9 7.2E-09 1.6E-13 93.2 9.4 49 171-219 216-273 (1088)
19 PF13429 TPR_15: Tetratricopep 98.9 3.2E-08 7E-13 80.8 11.1 162 4-185 110-274 (280)
20 KOG4318 Bicoid mRNA stability 98.8 4.1E-08 8.8E-13 88.5 12.0 151 2-157 23-287 (1088)
21 TIGR00756 PPR pentatricopeptid 98.8 1.1E-08 2.4E-13 56.1 4.5 35 72-106 1-35 (35)
22 TIGR02521 type_IV_pilW type IV 98.8 1E-06 2.2E-11 68.4 16.9 162 4-186 65-230 (234)
23 PF13812 PPR_3: Pentatricopept 98.7 3E-08 6.6E-13 54.2 4.1 33 72-104 2-34 (34)
24 PRK15174 Vi polysaccharide exp 98.7 2.1E-06 4.5E-11 78.3 18.2 198 7-207 79-300 (656)
25 PRK15174 Vi polysaccharide exp 98.7 3.1E-06 6.8E-11 77.2 18.4 201 4-207 110-334 (656)
26 PF13429 TPR_15: Tetratricopep 98.6 1.3E-07 2.9E-12 77.1 7.6 191 13-207 53-264 (280)
27 TIGR00990 3a0801s09 mitochondr 98.5 6.7E-06 1.5E-10 74.5 17.5 167 17-186 307-494 (615)
28 PRK12370 invasion protein regu 98.5 1E-05 2.2E-10 72.5 17.4 139 16-157 316-457 (553)
29 PF01535 PPR: PPR repeat; Int 98.5 1.6E-07 3.4E-12 50.1 3.4 31 72-102 1-31 (31)
30 TIGR00990 3a0801s09 mitochondr 98.5 1.1E-05 2.4E-10 73.1 17.2 165 6-188 333-500 (615)
31 PF13812 PPR_3: Pentatricopept 98.5 1.7E-07 3.7E-12 51.1 3.0 34 4-37 1-34 (34)
32 PRK09782 bacteriophage N4 rece 98.4 1.4E-05 3E-10 75.7 16.9 193 6-206 479-692 (987)
33 PRK09782 bacteriophage N4 rece 98.4 2.1E-05 4.6E-10 74.4 17.8 180 2-186 507-704 (987)
34 TIGR00756 PPR pentatricopeptid 98.4 3.7E-07 8.1E-12 49.8 3.8 35 107-141 1-35 (35)
35 PRK10747 putative protoheme IX 98.4 4.5E-05 9.8E-10 65.6 17.7 169 13-206 162-376 (398)
36 PRK11447 cellulose synthase su 98.3 0.00011 2.4E-09 71.3 19.4 172 9-187 466-699 (1157)
37 PRK14574 hmsH outer membrane p 98.2 7.7E-05 1.7E-09 69.4 16.6 174 7-205 38-217 (822)
38 PRK12370 invasion protein regu 98.2 6.3E-05 1.4E-09 67.4 15.6 151 4-157 338-491 (553)
39 PF08579 RPM2: Mitochondrial r 98.2 1.8E-05 3.8E-10 55.1 8.9 81 73-153 27-116 (120)
40 PRK11447 cellulose synthase su 98.2 0.00016 3.4E-09 70.3 18.4 58 42-99 464-523 (1157)
41 PF01535 PPR: PPR repeat; Int 98.2 2.4E-06 5.2E-11 45.3 3.4 31 107-137 1-31 (31)
42 PRK10049 pgaA outer membrane p 98.2 0.00012 2.5E-09 68.2 16.2 147 12-160 245-412 (765)
43 PF10037 MRP-S27: Mitochondria 98.2 8E-05 1.7E-09 64.0 13.8 122 33-154 60-186 (429)
44 PRK10747 putative protoheme IX 98.1 0.00015 3.3E-09 62.3 15.0 143 15-160 129-282 (398)
45 TIGR00540 hemY_coli hemY prote 98.1 0.00058 1.3E-08 58.9 18.1 116 70-206 262-385 (409)
46 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3.1E-09 62.1 14.0 125 41-186 171-295 (395)
47 PRK10049 pgaA outer membrane p 98.1 0.00054 1.2E-08 63.8 18.8 156 10-187 21-178 (765)
48 PF04733 Coatomer_E: Coatomer 98.0 6.4E-05 1.4E-09 61.8 10.2 150 13-187 111-264 (290)
49 PF06239 ECSIT: Evolutionarily 98.0 6.2E-05 1.3E-09 58.5 8.9 38 121-158 118-155 (228)
50 TIGR03302 OM_YfiO outer membra 98.0 0.00085 1.8E-08 53.1 15.9 164 4-187 33-231 (235)
51 TIGR00540 hemY_coli hemY prote 97.9 0.00051 1.1E-08 59.3 15.0 88 14-101 128-217 (409)
52 PRK14574 hmsH outer membrane p 97.9 0.00068 1.5E-08 63.3 16.5 150 10-160 298-469 (822)
53 PF10037 MRP-S27: Mitochondria 97.9 5E-05 1.1E-09 65.3 8.2 117 70-204 65-186 (429)
54 PF04733 Coatomer_E: Coatomer 97.9 0.0002 4.3E-09 59.0 11.2 118 47-189 110-231 (290)
55 KOG1129 TPR repeat-containing 97.9 0.00044 9.6E-09 56.9 12.7 126 9-138 228-356 (478)
56 PRK11189 lipoprotein NlpI; Pro 97.9 0.0045 9.7E-08 51.1 19.1 188 7-204 67-278 (296)
57 COG3071 HemY Uncharacterized e 97.9 0.0022 4.7E-08 53.9 16.7 179 4-208 187-378 (400)
58 PF08579 RPM2: Mitochondrial r 97.9 0.00011 2.3E-09 51.2 7.6 87 8-118 29-116 (120)
59 COG3063 PilF Tfp pilus assembl 97.8 0.0026 5.6E-08 50.0 15.4 169 10-199 41-212 (250)
60 KOG1126 DNA-binding cell divis 97.8 0.00026 5.5E-09 62.7 10.8 180 4-206 421-606 (638)
61 COG2956 Predicted N-acetylgluc 97.8 0.0019 4.1E-08 53.1 14.3 186 17-206 48-264 (389)
62 KOG4626 O-linked N-acetylgluco 97.7 0.00098 2.1E-08 59.2 13.2 197 4-206 116-335 (966)
63 PF06239 ECSIT: Evolutionarily 97.6 0.00044 9.5E-09 53.8 8.8 103 4-122 47-154 (228)
64 COG2956 Predicted N-acetylgluc 97.6 0.0013 2.7E-08 54.1 11.7 73 84-158 193-266 (389)
65 PRK10370 formate-dependent nit 97.6 0.0046 1E-07 48.0 14.6 99 36-136 70-174 (198)
66 PRK15359 type III secretion sy 97.6 0.0018 3.9E-08 47.6 11.4 107 24-136 13-122 (144)
67 PRK11189 lipoprotein NlpI; Pro 97.6 0.0068 1.5E-07 50.0 16.1 155 3-164 97-261 (296)
68 TIGR02552 LcrH_SycD type III s 97.6 0.0024 5.2E-08 45.8 11.9 103 38-143 16-120 (135)
69 PRK15359 type III secretion sy 97.6 0.0032 6.9E-08 46.3 12.4 101 7-110 27-129 (144)
70 COG4783 Putative Zn-dependent 97.6 0.0052 1.1E-07 53.0 14.8 158 48-210 315-481 (484)
71 KOG4626 O-linked N-acetylgluco 97.5 0.0044 9.6E-08 55.2 14.5 192 5-201 287-500 (966)
72 cd05804 StaR_like StaR_like; a 97.5 0.0076 1.6E-07 50.5 15.9 154 14-188 53-215 (355)
73 KOG1840 Kinesin light chain [C 97.5 0.0045 9.7E-08 54.6 14.2 164 5-186 284-477 (508)
74 PF05843 Suf: Suppressor of fo 97.5 0.00071 1.5E-08 55.4 8.6 142 5-151 2-150 (280)
75 KOG1155 Anaphase-promoting com 97.4 0.0028 6.1E-08 54.4 11.8 142 14-160 340-485 (559)
76 TIGR02552 LcrH_SycD type III s 97.4 0.0042 9.1E-08 44.5 11.2 107 5-114 18-126 (135)
77 KOG1840 Kinesin light chain [C 97.4 0.0043 9.3E-08 54.8 12.9 163 5-186 200-394 (508)
78 COG5010 TadD Flp pilus assembl 97.4 0.021 4.5E-07 45.6 15.5 152 13-187 75-230 (257)
79 PRK10370 formate-dependent nit 97.4 0.006 1.3E-07 47.4 12.3 106 3-110 72-182 (198)
80 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0046 9.9E-08 53.0 12.5 123 5-133 170-295 (395)
81 KOG2003 TPR repeat-containing 97.4 0.0045 9.7E-08 53.2 12.1 137 16-157 502-642 (840)
82 cd00189 TPR Tetratricopeptide 97.4 0.0024 5.3E-08 41.2 8.6 80 76-157 5-84 (100)
83 PRK15179 Vi polysaccharide bio 97.4 0.013 2.7E-07 54.0 15.8 129 3-135 85-217 (694)
84 cd00189 TPR Tetratricopeptide 97.3 0.0023 5E-08 41.4 8.3 88 45-133 6-95 (100)
85 PF12895 Apc3: Anaphase-promot 97.3 0.0013 2.7E-08 43.5 7.0 80 17-96 2-83 (84)
86 PF05843 Suf: Suppressor of fo 97.3 0.0027 5.9E-08 52.0 10.2 126 40-168 2-136 (280)
87 KOG1070 rRNA processing protei 97.3 0.0093 2E-07 57.4 14.2 182 6-189 1460-1664(1710)
88 PF09976 TPR_21: Tetratricopep 97.3 0.011 2.4E-07 43.3 12.0 122 5-131 13-143 (145)
89 PF09976 TPR_21: Tetratricopep 97.3 0.0086 1.9E-07 43.9 11.3 123 40-184 13-143 (145)
90 COG5010 TadD Flp pilus assembl 97.2 0.0078 1.7E-07 48.0 11.3 125 6-132 102-228 (257)
91 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.013 2.9E-07 40.5 11.6 95 42-136 5-106 (119)
92 KOG1126 DNA-binding cell divis 97.2 0.004 8.7E-08 55.4 10.2 144 20-188 335-518 (638)
93 COG3071 HemY Uncharacterized e 97.2 0.032 7E-07 47.1 15.1 149 7-157 121-279 (400)
94 PF12921 ATP13: Mitochondrial 97.2 0.0052 1.1E-07 44.1 9.0 100 38-154 1-101 (126)
95 PRK15179 Vi polysaccharide bio 97.2 0.033 7.2E-07 51.3 16.2 148 36-186 83-243 (694)
96 KOG3081 Vesicle coat complex C 97.1 0.021 4.6E-07 45.9 12.5 137 13-157 117-257 (299)
97 KOG3941 Intermediate in Toll s 97.1 0.0058 1.3E-07 49.6 9.4 108 56-164 51-181 (406)
98 KOG2002 TPR-containing nuclear 97.1 0.0069 1.5E-07 56.2 10.8 184 18-205 626-815 (1018)
99 PF12921 ATP13: Mitochondrial 97.0 0.008 1.7E-07 43.2 8.9 100 3-121 1-103 (126)
100 COG4783 Putative Zn-dependent 97.0 0.062 1.3E-06 46.6 15.3 119 14-134 316-436 (484)
101 cd05804 StaR_like StaR_like; a 97.0 0.11 2.4E-06 43.5 17.0 157 9-187 11-176 (355)
102 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.017 3.6E-07 40.0 10.1 95 6-101 4-106 (119)
103 PRK02603 photosystem I assembl 97.0 0.015 3.2E-07 43.9 10.4 127 71-205 35-165 (172)
104 KOG2002 TPR-containing nuclear 96.9 0.091 2E-06 49.1 16.0 159 38-214 269-449 (1018)
105 KOG3081 Vesicle coat complex C 96.8 0.057 1.2E-06 43.5 12.9 139 26-189 95-237 (299)
106 KOG1915 Cell cycle control pro 96.8 0.037 8.1E-07 48.0 12.5 165 17-186 86-271 (677)
107 KOG2047 mRNA splicing factor [ 96.8 0.061 1.3E-06 48.3 13.8 185 6-211 104-301 (835)
108 TIGR03302 OM_YfiO outer membra 96.8 0.048 1E-06 43.0 12.4 131 6-136 72-233 (235)
109 PLN03088 SGT1, suppressor of 96.8 0.022 4.7E-07 48.3 10.9 101 13-116 11-113 (356)
110 KOG1070 rRNA processing protei 96.7 0.075 1.6E-06 51.5 15.0 175 25-205 1445-1648(1710)
111 KOG1914 mRNA cleavage and poly 96.7 0.051 1.1E-06 47.8 12.6 134 20-157 347-488 (656)
112 PF14559 TPR_19: Tetratricopep 96.7 0.0065 1.4E-07 38.0 5.4 50 16-66 3-52 (68)
113 KOG2076 RNA polymerase III tra 96.6 0.2 4.3E-06 46.6 16.0 137 18-157 153-296 (895)
114 PF14559 TPR_19: Tetratricopep 96.6 0.0059 1.3E-07 38.3 4.8 49 51-99 3-53 (68)
115 PF12569 NARP1: NMDA receptor- 96.6 0.083 1.8E-06 47.0 13.5 154 6-161 196-368 (517)
116 KOG1155 Anaphase-promoting com 96.6 0.19 4.2E-06 43.6 14.9 86 72-160 365-451 (559)
117 KOG2003 TPR repeat-containing 96.5 0.28 6.1E-06 42.6 15.7 144 11-158 565-711 (840)
118 CHL00033 ycf3 photosystem I as 96.5 0.06 1.3E-06 40.3 10.7 109 20-131 15-138 (168)
119 PF12569 NARP1: NMDA receptor- 96.5 0.17 3.6E-06 45.2 14.8 155 5-160 144-324 (517)
120 PF04840 Vps16_C: Vps16, C-ter 96.5 0.05 1.1E-06 45.4 11.0 126 41-188 179-304 (319)
121 PF03704 BTAD: Bacterial trans 96.5 0.011 2.3E-07 43.3 6.3 83 15-97 17-122 (146)
122 PF12895 Apc3: Anaphase-promot 96.5 0.0031 6.6E-08 41.6 3.0 72 84-157 2-74 (84)
123 COG3063 PilF Tfp pilus assembl 96.4 0.34 7.4E-06 38.3 15.1 150 4-157 69-223 (250)
124 KOG0547 Translocase of outer m 96.3 0.11 2.4E-06 45.3 12.3 121 13-135 369-491 (606)
125 KOG1915 Cell cycle control pro 96.3 0.089 1.9E-06 45.8 11.5 153 16-189 378-537 (677)
126 PRK02603 photosystem I assembl 96.3 0.15 3.3E-06 38.3 11.8 112 39-157 35-167 (172)
127 KOG1914 mRNA cleavage and poly 96.2 0.11 2.4E-06 45.8 11.6 152 5-157 367-526 (656)
128 CHL00033 ycf3 photosystem I as 96.1 0.15 3.2E-06 38.2 10.9 81 71-152 35-117 (168)
129 KOG1128 Uncharacterized conser 96.1 0.03 6.4E-07 50.7 7.8 133 16-160 410-572 (777)
130 PF04840 Vps16_C: Vps16, C-ter 96.0 0.15 3.2E-06 42.7 11.5 106 72-187 178-290 (319)
131 KOG0495 HAT repeat protein [RN 96.0 0.47 1E-05 43.1 14.9 175 5-184 517-710 (913)
132 PRK10153 DNA-binding transcrip 96.0 0.31 6.8E-06 43.5 14.1 130 3-136 336-483 (517)
133 KOG1173 Anaphase-promoting com 95.9 0.12 2.6E-06 45.7 10.8 137 14-154 390-535 (611)
134 KOG1128 Uncharacterized conser 95.9 0.31 6.8E-06 44.4 13.4 162 37-206 396-568 (777)
135 KOG1129 TPR repeat-containing 95.9 0.047 1E-06 45.3 7.6 114 43-160 227-343 (478)
136 PLN03088 SGT1, suppressor of 95.8 0.092 2E-06 44.6 9.6 88 47-136 10-100 (356)
137 PRK14720 transcript cleavage f 95.7 0.4 8.6E-06 45.4 14.0 127 3-135 30-178 (906)
138 PF03704 BTAD: Bacterial trans 95.7 0.056 1.2E-06 39.4 7.1 73 72-145 63-140 (146)
139 KOG2076 RNA polymerase III tra 95.7 0.49 1.1E-05 44.1 13.9 146 12-159 385-544 (895)
140 KOG0985 Vesicle coat protein c 95.6 0.4 8.7E-06 45.6 13.1 145 3-161 1132-1299(1666)
141 smart00299 CLH Clathrin heavy 95.5 0.61 1.3E-05 33.6 14.3 127 7-153 10-137 (140)
142 PF13432 TPR_16: Tetratricopep 95.4 0.058 1.3E-06 33.3 5.4 49 49-97 7-57 (65)
143 KOG1173 Anaphase-promoting com 95.3 0.25 5.5E-06 43.7 10.6 136 49-204 390-535 (611)
144 KOG0985 Vesicle coat protein c 95.3 0.44 9.5E-06 45.3 12.6 150 16-184 1060-1219(1666)
145 PF12688 TPR_5: Tetratrico pep 95.3 0.22 4.8E-06 35.4 8.5 51 83-133 13-65 (120)
146 PF13170 DUF4003: Protein of u 95.3 0.51 1.1E-05 39.1 11.9 149 5-157 61-232 (297)
147 PLN02789 farnesyltranstransfer 95.3 1.5 3.3E-05 36.7 16.3 146 6-154 39-189 (320)
148 KOG3616 Selective LIM binding 95.2 0.19 4.2E-06 46.1 9.6 87 74-189 768-854 (1636)
149 KOG2376 Signal recognition par 95.1 0.96 2.1E-05 40.5 13.5 168 9-185 17-201 (652)
150 KOG0495 HAT repeat protein [RN 95.1 1.3 2.7E-05 40.5 14.3 34 172-205 732-767 (913)
151 PRK10803 tol-pal system protei 95.1 0.39 8.5E-06 39.0 10.6 95 39-136 143-247 (263)
152 PF12688 TPR_5: Tetratrico pep 95.1 0.48 1E-05 33.6 9.7 84 14-98 11-102 (120)
153 KOG4340 Uncharacterized conser 95.0 0.68 1.5E-05 38.3 11.4 141 14-158 154-327 (459)
154 PF13762 MNE1: Mitochondrial s 95.0 0.42 9E-06 35.1 9.4 88 31-119 29-128 (145)
155 KOG3785 Uncharacterized conser 95.0 0.28 6E-06 41.4 9.3 90 47-139 401-494 (557)
156 PLN02789 farnesyltranstransfer 94.9 1.9 4.1E-05 36.1 15.8 173 13-203 80-267 (320)
157 PRK15363 pathogenicity island 94.9 1.1 2.5E-05 33.3 11.5 93 42-135 38-132 (157)
158 PF07079 DUF1347: Protein of u 94.8 0.25 5.5E-06 42.8 8.9 144 15-159 17-185 (549)
159 KOG0624 dsRNA-activated protei 94.8 1.4 3E-05 37.2 12.8 163 17-189 51-253 (504)
160 PRK15363 pathogenicity island 94.8 0.43 9.4E-06 35.5 9.1 84 14-98 45-130 (157)
161 KOG3616 Selective LIM binding 94.7 0.29 6.2E-06 45.0 9.5 168 13-205 741-922 (1636)
162 PRK14720 transcript cleavage f 94.7 2.1 4.6E-05 40.7 15.5 175 9-202 88-268 (906)
163 COG5107 RNA14 Pre-mRNA 3'-end 94.7 0.5 1.1E-05 41.1 10.3 114 39-158 397-519 (660)
164 PF13432 TPR_16: Tetratricopep 94.6 0.17 3.7E-06 31.2 5.9 57 78-136 4-61 (65)
165 PRK10153 DNA-binding transcrip 94.5 1.7 3.8E-05 38.8 13.9 134 33-186 331-480 (517)
166 PF07035 Mic1: Colon cancer-as 94.4 0.7 1.5E-05 34.8 9.7 106 70-205 28-134 (167)
167 KOG3941 Intermediate in Toll s 94.3 0.3 6.5E-06 40.0 7.9 87 18-121 86-173 (406)
168 PF13414 TPR_11: TPR repeat; P 94.3 0.19 4.1E-06 31.3 5.6 58 40-97 4-64 (69)
169 PF14938 SNAP: Soluble NSF att 94.2 2.2 4.7E-05 34.9 13.1 26 74-99 158-183 (282)
170 COG5107 RNA14 Pre-mRNA 3'-end 94.1 0.54 1.2E-05 40.9 9.3 84 71-157 397-482 (660)
171 PF13414 TPR_11: TPR repeat; P 93.7 0.29 6.3E-06 30.4 5.6 60 72-133 4-65 (69)
172 PRK10803 tol-pal system protei 93.6 1.2 2.5E-05 36.3 10.2 100 5-106 144-250 (263)
173 PF13424 TPR_12: Tetratricopep 93.5 0.18 4E-06 32.3 4.6 25 72-96 47-71 (78)
174 KOG0547 Translocase of outer m 93.4 2.6 5.6E-05 37.1 12.4 148 17-186 339-489 (606)
175 KOG4340 Uncharacterized conser 93.4 0.77 1.7E-05 37.9 8.8 123 5-131 180-335 (459)
176 PF00637 Clathrin: Region in C 93.4 0.055 1.2E-06 39.3 2.1 86 9-98 12-97 (143)
177 KOG3785 Uncharacterized conser 93.3 2.1 4.5E-05 36.4 11.2 145 19-187 338-489 (557)
178 KOG2053 Mitochondrial inherita 93.3 1.2 2.7E-05 41.6 10.8 114 16-134 21-138 (932)
179 KOG4570 Uncharacterized conser 93.3 1.2 2.5E-05 37.1 9.6 103 32-135 57-164 (418)
180 PF13371 TPR_9: Tetratricopept 93.2 0.59 1.3E-05 29.3 6.6 57 79-136 3-59 (73)
181 PRK04841 transcriptional regul 93.1 2.6 5.6E-05 40.1 13.4 144 14-157 462-628 (903)
182 smart00299 CLH Clathrin heavy 93.1 2.3 5.1E-05 30.5 12.5 124 43-203 11-137 (140)
183 KOG2053 Mitochondrial inherita 92.9 2.6 5.5E-05 39.6 12.1 110 7-119 44-157 (932)
184 KOG0553 TPR repeat-containing 92.8 1.3 2.7E-05 36.4 9.1 102 14-118 91-194 (304)
185 PF13371 TPR_9: Tetratricopept 92.7 0.45 9.7E-06 29.9 5.4 53 47-99 3-57 (73)
186 PLN03098 LPA1 LOW PSII ACCUMUL 92.6 2.3 5E-05 37.1 11.0 64 70-135 74-141 (453)
187 PF13424 TPR_12: Tetratricopep 92.4 0.22 4.8E-06 31.9 3.7 60 5-64 6-71 (78)
188 COG3629 DnrI DNA-binding trans 92.3 0.99 2.1E-05 36.9 8.1 75 41-115 155-236 (280)
189 KOG1125 TPR repeat-containing 92.1 6.5 0.00014 35.2 13.2 138 18-157 408-558 (579)
190 PF14938 SNAP: Soluble NSF att 91.7 1.2 2.6E-05 36.4 8.1 149 7-157 38-212 (282)
191 PRK04841 transcriptional regul 91.5 7.2 0.00016 37.1 14.2 181 7-187 534-759 (903)
192 PRK15331 chaperone protein Sic 91.0 2.2 4.8E-05 32.0 8.1 85 48-134 46-133 (165)
193 PLN03098 LPA1 LOW PSII ACCUMUL 90.9 7.8 0.00017 33.9 12.3 64 37-100 73-141 (453)
194 PF10300 DUF3808: Protein of u 90.8 11 0.00024 33.3 14.2 130 6-136 190-335 (468)
195 PF13929 mRNA_stabil: mRNA sta 90.5 4.2 9.1E-05 33.4 9.9 114 52-184 141-263 (292)
196 KOG2376 Signal recognition par 90.5 12 0.00027 33.7 13.3 161 5-186 340-518 (652)
197 KOG3617 WD40 and TPR repeat-co 90.4 11 0.00024 35.7 13.2 149 5-169 727-899 (1416)
198 COG4235 Cytochrome c biogenesi 90.3 7.3 0.00016 32.0 11.1 98 36-136 153-257 (287)
199 PF07079 DUF1347: Protein of u 90.1 3.2 7E-05 36.3 9.2 133 50-205 17-181 (549)
200 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.2 4.8E-05 29.1 6.6 59 89-149 25-84 (103)
201 KOG1174 Anaphase-promoting com 89.9 12 0.00027 32.5 12.5 79 15-96 311-393 (564)
202 PF13512 TPR_18: Tetratricopep 89.8 4.8 0.0001 29.5 8.8 68 50-118 21-94 (142)
203 KOG0553 TPR repeat-containing 89.7 3.9 8.5E-05 33.7 9.0 98 82-201 92-192 (304)
204 PRK10866 outer membrane biogen 89.6 9.3 0.0002 30.6 12.0 153 6-160 35-231 (243)
205 PF09205 DUF1955: Domain of un 89.6 6.3 0.00014 28.7 9.0 48 109-157 89-136 (161)
206 KOG1156 N-terminal acetyltrans 89.4 8.1 0.00018 35.2 11.5 121 36-160 366-501 (700)
207 PF10602 RPN7: 26S proteasome 89.4 2.6 5.6E-05 32.1 7.5 62 72-133 37-100 (177)
208 PF11663 Toxin_YhaV: Toxin wit 89.3 0.43 9.3E-06 34.4 3.0 36 80-117 104-139 (140)
209 KOG1125 TPR repeat-containing 89.2 4.8 0.0001 36.0 9.9 111 14-127 440-563 (579)
210 PF13929 mRNA_stabil: mRNA sta 89.2 11 0.00024 31.0 11.8 118 35-153 160-290 (292)
211 KOG2796 Uncharacterized conser 88.9 12 0.00025 30.7 11.0 135 9-148 182-326 (366)
212 COG3629 DnrI DNA-binding trans 88.8 4.8 0.0001 33.0 9.1 79 72-151 154-237 (280)
213 PF09205 DUF1955: Domain of un 88.6 7.6 0.00017 28.3 10.2 119 17-138 15-152 (161)
214 COG1729 Uncharacterized protei 88.6 4.9 0.00011 32.5 8.9 95 73-188 144-244 (262)
215 COG1729 Uncharacterized protei 88.5 6.5 0.00014 31.9 9.5 94 41-135 144-244 (262)
216 TIGR02508 type_III_yscG type I 88.3 6.5 0.00014 27.1 8.1 86 19-109 20-105 (115)
217 PF10300 DUF3808: Protein of u 88.2 13 0.00028 32.9 12.1 124 6-133 231-374 (468)
218 PF04053 Coatomer_WDAD: Coatom 88.2 15 0.00033 32.2 12.4 98 42-157 298-418 (443)
219 PRK15331 chaperone protein Sic 88.2 4.4 9.6E-05 30.4 7.8 84 14-99 47-133 (165)
220 KOG2047 mRNA splicing factor [ 87.7 17 0.00036 33.5 12.2 123 7-134 141-276 (835)
221 KOG2796 Uncharacterized conser 87.5 14 0.00031 30.2 11.3 160 42-201 139-329 (366)
222 COG4235 Cytochrome c biogenesi 87.5 10 0.00022 31.2 10.2 114 68-203 153-272 (287)
223 KOG4162 Predicted calmodulin-b 87.5 18 0.0004 33.6 12.6 124 41-185 652-780 (799)
224 KOG3060 Uncharacterized conser 87.4 14 0.00031 29.9 14.9 169 16-189 24-221 (289)
225 PRK10866 outer membrane biogen 87.3 13 0.00029 29.6 15.0 119 41-161 35-195 (243)
226 KOG2280 Vacuolar assembly/sort 87.3 4.4 9.6E-05 37.4 8.6 142 24-186 668-810 (829)
227 PF13762 MNE1: Mitochondrial s 87.0 8.4 0.00018 28.3 8.6 85 72-156 40-130 (145)
228 KOG3617 WD40 and TPR repeat-co 87.0 6 0.00013 37.3 9.3 139 37-188 724-887 (1416)
229 PF02284 COX5A: Cytochrome c o 87.0 5.6 0.00012 27.4 7.0 57 92-149 31-87 (108)
230 KOG1174 Anaphase-promoting com 86.6 21 0.00045 31.1 14.2 170 15-189 207-434 (564)
231 PF13176 TPR_7: Tetratricopept 86.3 1.8 3.8E-05 23.3 3.7 23 74-96 2-24 (36)
232 KOG1156 N-terminal acetyltrans 84.7 20 0.00043 32.8 11.2 49 15-64 52-100 (700)
233 cd08819 CARD_MDA5_2 Caspase ac 84.0 10 0.00022 25.3 7.3 66 23-91 21-86 (88)
234 PF00637 Clathrin: Region in C 84.0 0.42 9E-06 34.6 0.6 30 173-205 110-139 (143)
235 KOG4570 Uncharacterized conser 83.5 3.8 8.3E-05 34.2 5.9 89 70-160 63-154 (418)
236 KOG3060 Uncharacterized conser 82.8 24 0.00052 28.7 15.8 147 10-160 58-207 (289)
237 PF07035 Mic1: Colon cancer-as 82.8 18 0.0004 27.2 12.3 39 26-64 16-54 (167)
238 COG4700 Uncharacterized protei 82.6 21 0.00045 27.8 15.1 137 33-188 83-226 (251)
239 PRK15180 Vi polysaccharide bio 82.5 12 0.00026 33.2 8.8 116 16-136 301-421 (831)
240 KOG0548 Molecular co-chaperone 82.4 6.8 0.00015 34.8 7.3 100 13-116 11-114 (539)
241 PF13428 TPR_14: Tetratricopep 81.4 4 8.7E-05 22.9 4.0 24 42-65 4-27 (44)
242 PF13428 TPR_14: Tetratricopep 81.0 3.7 8E-05 23.1 3.8 28 73-100 3-30 (44)
243 PF13512 TPR_18: Tetratricopep 80.9 15 0.00033 26.8 7.7 85 71-157 11-98 (142)
244 PF13176 TPR_7: Tetratricopept 80.4 3.7 8.1E-05 22.0 3.5 24 41-64 1-24 (36)
245 PF02284 COX5A: Cytochrome c o 80.4 8.5 0.00019 26.5 5.8 27 70-96 44-70 (108)
246 PF07163 Pex26: Pex26 protein; 80.2 18 0.00039 29.8 8.5 82 74-157 86-174 (309)
247 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 11 0.00025 25.7 6.3 45 22-66 25-69 (103)
248 KOG4555 TPR repeat-containing 80.1 21 0.00045 26.1 8.1 87 48-136 52-145 (175)
249 KOG1586 Protein required for f 80.0 12 0.00026 30.0 7.4 77 109-186 96-181 (288)
250 KOG0543 FKBP-type peptidyl-pro 79.9 27 0.00058 30.1 9.9 97 71-186 257-353 (397)
251 PF13374 TPR_10: Tetratricopep 79.9 4.2 9.2E-05 21.9 3.7 27 72-98 3-29 (42)
252 KOG1127 TPR repeat-containing 79.3 22 0.00048 34.4 9.9 25 107-131 597-621 (1238)
253 PF13281 DUF4071: Domain of un 79.2 40 0.00088 28.9 14.8 166 7-194 144-339 (374)
254 PF11838 ERAP1_C: ERAP1-like C 78.2 37 0.00079 27.9 12.1 98 19-117 145-246 (324)
255 KOG1127 TPR repeat-containing 76.8 32 0.00069 33.4 10.1 114 41-157 494-612 (1238)
256 TIGR02561 HrpB1_HrpK type III 76.2 29 0.00063 25.7 10.9 85 51-140 22-111 (153)
257 TIGR02561 HrpB1_HrpK type III 76.0 15 0.00033 27.2 6.4 49 84-136 23-74 (153)
258 PF10602 RPN7: 26S proteasome 75.7 32 0.0007 26.0 8.6 61 39-99 36-101 (177)
259 KOG2280 Vacuolar assembly/sort 75.0 42 0.0009 31.4 10.2 101 12-128 692-792 (829)
260 PF09613 HrpB1_HrpK: Bacterial 74.7 33 0.00072 25.7 11.6 109 41-157 9-125 (160)
261 KOG0548 Molecular co-chaperone 74.3 29 0.00064 31.0 8.8 101 48-151 11-114 (539)
262 COG4105 ComL DNA uptake lipopr 73.5 47 0.001 26.9 15.6 153 3-157 34-220 (254)
263 COG4455 ImpE Protein of avirul 73.5 39 0.00084 27.0 8.4 76 74-150 4-81 (273)
264 COG4700 Uncharacterized protei 73.0 42 0.00092 26.1 12.4 114 9-127 94-214 (251)
265 PF11846 DUF3366: Domain of un 72.9 20 0.00044 27.3 7.0 57 43-100 112-173 (193)
266 PF09477 Type_III_YscG: Bacter 72.7 30 0.00064 24.2 8.6 79 19-101 21-99 (116)
267 PF00515 TPR_1: Tetratricopept 72.6 10 0.00022 19.5 3.8 27 73-99 3-29 (34)
268 PF11848 DUF3368: Domain of un 71.2 11 0.00025 21.8 4.1 30 84-113 15-44 (48)
269 TIGR03504 FimV_Cterm FimV C-te 70.9 11 0.00023 21.6 3.8 25 112-136 5-29 (44)
270 PHA02875 ankyrin repeat protei 70.8 67 0.0015 27.5 10.9 17 171-187 177-193 (413)
271 KOG0991 Replication factor C, 70.5 56 0.0012 26.5 11.0 82 50-137 203-301 (333)
272 PHA02875 ankyrin repeat protei 70.5 68 0.0015 27.4 11.1 171 14-217 9-196 (413)
273 PF13431 TPR_17: Tetratricopep 70.4 9.2 0.0002 20.3 3.3 21 38-58 12-32 (34)
274 PF13170 DUF4003: Protein of u 70.2 62 0.0013 26.8 14.8 14 176-189 199-212 (297)
275 PF11207 DUF2989: Protein of u 69.7 35 0.00076 26.6 7.5 81 44-126 112-198 (203)
276 COG3118 Thioredoxin domain-con 69.3 64 0.0014 26.8 9.2 50 16-66 146-195 (304)
277 cd08326 CARD_CASP9 Caspase act 69.0 27 0.00059 23.0 5.9 63 23-90 18-80 (84)
278 PF11848 DUF3368: Domain of un 68.2 11 0.00025 21.8 3.6 36 13-48 11-46 (48)
279 PF07721 TPR_4: Tetratricopept 68.0 10 0.00022 18.6 2.9 16 79-94 9-24 (26)
280 PF13525 YfiO: Outer membrane 67.9 31 0.00067 26.5 7.1 149 46-206 12-193 (203)
281 KOG1920 IkappaB kinase complex 67.0 1.4E+02 0.003 29.7 12.8 127 80-210 860-1018(1265)
282 KOG4162 Predicted calmodulin-b 67.0 1.1E+02 0.0025 28.7 11.3 127 8-136 654-784 (799)
283 KOG2297 Predicted translation 66.6 43 0.00093 28.1 7.7 82 81-172 265-352 (412)
284 KOG2297 Predicted translation 66.3 47 0.001 27.9 7.8 55 58-123 186-240 (412)
285 PF12796 Ank_2: Ankyrin repeat 66.0 31 0.00067 22.1 5.9 81 48-140 3-86 (89)
286 COG5108 RPO41 Mitochondrial DN 65.5 26 0.00057 32.4 6.8 75 8-82 32-114 (1117)
287 PF10366 Vps39_1: Vacuolar sor 64.4 45 0.00096 23.1 9.2 28 72-99 40-67 (108)
288 PF04053 Coatomer_WDAD: Coatom 64.2 74 0.0016 28.1 9.3 112 7-130 298-426 (443)
289 PF13525 YfiO: Outer membrane 64.2 64 0.0014 24.8 13.6 148 7-157 9-194 (203)
290 KOG4077 Cytochrome c oxidase, 64.1 39 0.00086 24.4 6.2 55 94-149 72-126 (149)
291 PF12926 MOZART2: Mitotic-spin 63.5 41 0.0009 22.4 6.8 42 25-66 29-70 (88)
292 PF04184 ST7: ST7 protein; In 62.7 37 0.0008 30.3 7.0 76 112-205 265-345 (539)
293 PF11663 Toxin_YhaV: Toxin wit 62.5 9.5 0.0002 27.7 2.9 32 15-48 106-137 (140)
294 COG3898 Uncharacterized membra 62.4 1.1E+02 0.0023 26.8 12.6 41 113-157 270-310 (531)
295 PF02607 B12-binding_2: B12 bi 61.9 17 0.00037 23.1 4.0 34 85-118 15-48 (79)
296 PF14689 SPOB_a: Sensor_kinase 60.1 15 0.00032 22.6 3.2 44 55-99 6-51 (62)
297 PF11846 DUF3366: Domain of un 59.8 26 0.00056 26.7 5.3 20 138-157 141-160 (193)
298 KOG0276 Vesicle coat complex C 59.7 87 0.0019 28.9 8.9 99 51-185 649-747 (794)
299 KOG2063 Vacuolar assembly/sort 59.4 1.4E+02 0.003 28.9 10.6 116 41-156 506-641 (877)
300 KOG2908 26S proteasome regulat 58.2 73 0.0016 27.0 7.7 81 44-125 80-176 (380)
301 PF10579 Rapsyn_N: Rapsyn N-te 58.0 21 0.00046 23.3 3.7 21 72-92 44-64 (80)
302 cd08819 CARD_MDA5_2 Caspase ac 58.0 54 0.0012 21.9 6.0 65 125-210 21-85 (88)
303 PF02847 MA3: MA3 domain; Int 57.4 39 0.00085 23.0 5.4 23 44-66 7-29 (113)
304 KOG2114 Vacuolar assembly/sort 56.9 1.9E+02 0.004 27.8 10.7 144 5-157 284-447 (933)
305 PF11768 DUF3312: Protein of u 56.3 84 0.0018 28.4 8.2 94 42-136 411-508 (545)
306 PF13174 TPR_6: Tetratricopept 55.6 14 0.00031 18.5 2.3 21 79-99 8-28 (33)
307 PRK10564 maltose regulon perip 55.1 18 0.0004 29.9 3.8 39 73-111 259-297 (303)
308 cd08332 CARD_CASP2 Caspase act 54.9 61 0.0013 21.6 6.9 62 23-89 22-83 (90)
309 PF12796 Ank_2: Ankyrin repeat 54.7 54 0.0012 20.9 6.2 12 129-140 42-53 (89)
310 PF04184 ST7: ST7 protein; In 54.3 78 0.0017 28.4 7.6 102 13-115 209-340 (539)
311 cd08323 CARD_APAF1 Caspase act 54.0 62 0.0013 21.4 7.8 63 23-90 16-78 (86)
312 PF11207 DUF2989: Protein of u 53.7 1.1E+02 0.0023 24.0 7.9 78 81-160 117-197 (203)
313 KOG1538 Uncharacterized conser 53.4 87 0.0019 29.2 7.9 88 42-137 750-848 (1081)
314 COG3118 Thioredoxin domain-con 53.3 1.3E+02 0.0029 25.0 14.1 112 47-160 142-255 (304)
315 COG0457 NrfG FOG: TPR repeat [ 52.2 86 0.0019 22.5 15.7 151 5-157 60-218 (291)
316 PF08631 SPO22: Meiosis protei 52.0 1.3E+02 0.0028 24.4 13.8 167 5-183 85-270 (278)
317 COG4105 ComL DNA uptake lipopr 51.9 1.3E+02 0.0028 24.4 8.4 157 39-205 35-218 (254)
318 COG4455 ImpE Protein of avirul 51.8 81 0.0018 25.2 6.6 89 108-217 3-97 (273)
319 PF10475 DUF2450: Protein of u 51.5 86 0.0019 25.8 7.3 105 48-160 107-216 (291)
320 cd07153 Fur_like Ferric uptake 51.5 29 0.00062 23.9 4.0 47 10-56 6-52 (116)
321 KOG2114 Vacuolar assembly/sort 51.5 1.3E+02 0.0029 28.7 8.9 82 10-94 403-486 (933)
322 KOG0403 Neoplastic transformat 51.4 63 0.0014 28.6 6.5 76 109-206 512-589 (645)
323 KOG4334 Uncharacterized conser 50.9 20 0.00043 31.7 3.5 77 72-154 491-573 (650)
324 PRK14700 recombination factor 50.8 1.4E+02 0.0031 24.8 8.3 61 77-137 129-197 (300)
325 KOG0543 FKBP-type peptidyl-pro 50.6 1.4E+02 0.0031 25.8 8.4 93 39-134 257-354 (397)
326 PF02607 B12-binding_2: B12 bi 50.2 22 0.00048 22.6 3.0 40 118-157 13-52 (79)
327 PF13181 TPR_8: Tetratricopept 50.2 34 0.00074 17.3 3.8 24 74-97 4-27 (34)
328 COG5108 RPO41 Mitochondrial DN 49.4 98 0.0021 29.0 7.6 90 44-133 33-130 (1117)
329 PF02847 MA3: MA3 domain; Int 49.1 82 0.0018 21.4 6.4 23 75-97 6-28 (113)
330 PF13281 DUF4071: Domain of un 49.0 1.8E+02 0.0038 25.1 11.2 112 43-156 145-274 (374)
331 smart00028 TPR Tetratricopepti 48.2 30 0.00065 16.1 3.1 26 73-98 3-28 (34)
332 KOG0550 Molecular chaperone (D 47.7 55 0.0012 28.6 5.6 54 81-134 259-315 (486)
333 KOG0890 Protein kinase of the 47.0 3.5E+02 0.0076 29.3 11.7 113 13-131 1392-1508(2382)
334 COG2178 Predicted RNA-binding 46.3 1.4E+02 0.003 23.2 7.8 96 38-135 28-150 (204)
335 PF09613 HrpB1_HrpK: Bacterial 45.5 1.3E+02 0.0028 22.6 11.3 112 10-127 16-130 (160)
336 KOG0550 Molecular chaperone (D 45.2 99 0.0022 27.1 6.7 85 14-99 259-349 (486)
337 PF07719 TPR_2: Tetratricopept 44.6 43 0.00092 16.8 3.8 25 74-98 4-28 (34)
338 PF14669 Asp_Glu_race_2: Putat 44.4 34 0.00073 26.7 3.5 23 73-95 183-205 (233)
339 PF09454 Vps23_core: Vps23 cor 44.2 62 0.0014 20.2 4.2 49 104-153 6-54 (65)
340 PF10366 Vps39_1: Vacuolar sor 43.2 88 0.0019 21.6 5.3 27 143-187 41-67 (108)
341 cd08329 CARD_BIRC2_BIRC3 Caspa 43.0 1E+02 0.0022 20.7 6.6 67 22-94 24-90 (94)
342 PRK14962 DNA polymerase III su 42.8 2.4E+02 0.0053 25.1 11.8 105 32-140 191-318 (472)
343 COG0457 NrfG FOG: TPR repeat [ 42.6 1.3E+02 0.0027 21.6 15.0 163 7-189 98-266 (291)
344 KOG2041 WD40 repeat protein [G 42.2 3E+02 0.0065 26.2 9.5 17 173-189 892-908 (1189)
345 PF01475 FUR: Ferric uptake re 40.6 32 0.00069 24.0 2.8 47 9-55 12-58 (120)
346 PF12862 Apc5: Anaphase-promot 39.9 1.1E+02 0.0024 20.2 5.7 52 15-66 9-68 (94)
347 PRK05225 ketol-acid reductoiso 39.9 1E+02 0.0022 27.4 6.2 23 194-216 356-383 (487)
348 PF11864 DUF3384: Domain of un 39.6 2.7E+02 0.0058 24.6 11.1 84 85-169 149-243 (464)
349 cd07153 Fur_like Ferric uptake 39.6 1E+02 0.0023 21.0 5.3 45 113-157 7-51 (116)
350 COG2178 Predicted RNA-binding 39.5 90 0.002 24.3 5.2 113 70-187 28-149 (204)
351 PF11817 Foie-gras_1: Foie gra 39.4 1.4E+02 0.003 23.8 6.6 74 57-131 163-243 (247)
352 PHA03100 ankyrin repeat protei 39.3 2.6E+02 0.0056 24.3 10.8 137 10-157 38-189 (480)
353 cd08326 CARD_CASP9 Caspase act 39.2 69 0.0015 21.0 4.0 30 176-206 47-76 (84)
354 COG0735 Fur Fe2+/Zn2+ uptake r 39.1 53 0.0011 24.0 3.8 63 24-88 6-72 (145)
355 PHA03100 ankyrin repeat protei 39.0 2.6E+02 0.0057 24.3 11.2 123 25-156 87-227 (480)
356 TIGR01914 cas_Csa4 CRISPR-asso 38.6 1.2E+02 0.0026 25.6 6.1 58 55-114 292-349 (354)
357 PF11817 Foie-gras_1: Foie gra 37.9 1.6E+02 0.0034 23.5 6.8 50 111-160 183-237 (247)
358 PF04090 RNA_pol_I_TF: RNA pol 37.9 1.1E+02 0.0023 23.9 5.4 29 72-100 42-70 (199)
359 PF08780 NTase_sub_bind: Nucle 37.7 1.5E+02 0.0032 21.0 7.8 64 70-136 25-89 (124)
360 PRK10564 maltose regulon perip 37.6 75 0.0016 26.4 4.8 44 102-145 252-296 (303)
361 KOG4077 Cytochrome c oxidase, 37.2 1.6E+02 0.0035 21.3 6.1 28 70-97 83-110 (149)
362 COG3947 Response regulator con 37.0 93 0.002 26.0 5.1 66 41-107 281-354 (361)
363 PRK11639 zinc uptake transcrip 36.6 48 0.001 24.9 3.3 63 26-89 13-78 (169)
364 PRK11639 zinc uptake transcrip 36.6 1.8E+02 0.0039 21.7 7.1 46 76-121 30-75 (169)
365 cd08330 CARD_ASC_NALP1 Caspase 36.5 1.2E+02 0.0026 19.7 6.8 59 20-83 14-72 (82)
366 PF09454 Vps23_core: Vps23 cor 35.7 53 0.0012 20.5 2.9 47 70-117 7-53 (65)
367 PF09797 NatB_MDM20: N-acetylt 35.3 2.5E+02 0.0055 23.7 8.0 36 72-107 218-253 (365)
368 smart00638 LPD_N Lipoprotein N 35.1 3.4E+02 0.0074 24.5 13.2 115 37-155 308-432 (574)
369 KOG0991 Replication factor C, 35.1 2E+02 0.0043 23.4 6.6 62 83-145 204-277 (333)
370 KOG1130 Predicted G-alpha GTPa 35.0 36 0.00078 29.8 2.6 51 13-63 26-79 (639)
371 PF01475 FUR: Ferric uptake re 34.4 1.2E+02 0.0025 21.0 4.9 47 111-157 12-58 (120)
372 KOG4648 Uncharacterized conser 34.3 1.5E+02 0.0033 25.5 6.1 68 80-157 106-174 (536)
373 TIGR01503 MthylAspMut_E methyl 34.1 1.6E+02 0.0035 26.2 6.4 75 54-134 29-114 (480)
374 PF09373 PMBR: Pseudomurein-bi 34.0 74 0.0016 16.7 2.9 29 191-219 4-32 (33)
375 COG3947 Response regulator con 33.9 2.9E+02 0.0062 23.2 13.6 133 20-157 149-329 (361)
376 KOG1147 Glutamyl-tRNA syntheta 33.7 30 0.00066 31.1 2.1 63 126-188 253-332 (712)
377 KOG4567 GTPase-activating prot 33.7 2.9E+02 0.0064 23.3 7.5 58 24-83 263-320 (370)
378 TIGR03581 EF_0839 conserved hy 33.3 2.3E+02 0.0049 22.5 6.5 80 54-133 136-235 (236)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 33.0 1.8E+02 0.0039 20.6 7.6 39 57-95 81-123 (126)
380 KOG1538 Uncharacterized conser 32.6 4.3E+02 0.0094 24.9 12.1 58 5-65 599-658 (1081)
381 cd01671 CARD Caspase activatio 31.9 1.3E+02 0.0029 18.8 5.9 63 21-88 13-75 (80)
382 COG5210 GTPase-activating prot 31.7 1.4E+02 0.0031 26.6 6.0 46 93-138 364-409 (496)
383 cd08789 CARD_IPS-1_RIG-I Caspa 31.1 1.6E+02 0.0034 19.3 6.0 34 51-86 44-77 (84)
384 smart00544 MA3 Domain in DAP-5 31.1 1.7E+02 0.0037 19.8 8.6 22 45-66 8-29 (113)
385 PF07163 Pex26: Pex26 protein; 30.9 3.1E+02 0.0068 22.8 7.7 84 11-94 90-181 (309)
386 COG0735 Fur Fe2+/Zn2+ uptake r 30.9 2.1E+02 0.0046 20.8 7.2 65 93-158 8-72 (145)
387 smart00804 TAP_C C-terminal do 30.6 44 0.00096 20.7 1.9 21 19-39 40-61 (63)
388 cd00280 TRFH Telomeric Repeat 30.0 2.5E+02 0.0054 21.8 6.1 43 112-157 117-159 (200)
389 TIGR02508 type_III_yscG type I 29.7 1.9E+02 0.0042 20.0 7.9 86 54-146 20-107 (115)
390 PHA02884 ankyrin repeat protei 29.6 1.6E+02 0.0036 24.4 5.7 22 66-88 26-47 (300)
391 smart00638 LPD_N Lipoprotein N 29.0 4.4E+02 0.0095 23.8 13.9 149 4-157 310-476 (574)
392 PF10255 Paf67: RNA polymerase 28.8 2.2E+02 0.0048 24.8 6.5 23 43-65 126-148 (404)
393 PF09119 SicP-binding: SicP bi 28.4 1.8E+02 0.0038 19.1 5.2 50 54-104 21-70 (81)
394 PF10963 DUF2765: Protein of u 28.3 1.8E+02 0.0039 19.2 4.6 60 34-98 11-70 (83)
395 COG2405 Predicted nucleic acid 27.7 1.4E+02 0.003 22.0 4.2 42 108-150 112-153 (157)
396 KOG2041 WD40 repeat protein [G 27.7 5.5E+02 0.012 24.6 8.8 93 35-134 848-951 (1189)
397 PF11491 DUF3213: Protein of u 27.4 14 0.0003 24.3 -0.8 25 133-157 16-40 (88)
398 PHA02878 ankyrin repeat protei 27.4 4.2E+02 0.0092 23.2 12.0 47 15-65 45-93 (477)
399 PF09868 DUF2095: Uncharacteri 27.1 2.3E+02 0.005 20.0 5.1 38 111-149 66-103 (128)
400 PRK11906 transcriptional regul 27.0 4.5E+02 0.0098 23.4 11.8 107 19-128 319-429 (458)
401 PRK12357 glutaminase; Reviewed 26.9 3.8E+02 0.0082 22.7 7.3 29 160-188 178-206 (326)
402 KOG0276 Vesicle coat complex C 26.7 5.3E+02 0.012 24.1 9.5 82 38-131 665-746 (794)
403 PF11768 DUF3312: Protein of u 26.7 2E+02 0.0043 26.1 5.9 63 72-134 409-472 (545)
404 PF04090 RNA_pol_I_TF: RNA pol 26.4 2E+02 0.0043 22.4 5.2 29 6-34 43-71 (199)
405 smart00386 HAT HAT (Half-A-TPR 26.4 90 0.0019 15.1 4.0 28 18-46 1-28 (33)
406 KOG0037 Ca2+-binding protein, 26.4 1.1E+02 0.0023 24.3 3.7 102 70-188 92-199 (221)
407 COG5210 GTPase-activating prot 26.2 4.7E+02 0.01 23.3 9.2 43 24-66 362-404 (496)
408 smart00164 TBC Domain in Tre-2 26.1 1.8E+02 0.0039 21.8 5.1 81 19-101 108-197 (199)
409 PF14840 DNA_pol3_delt_C: Proc 26.1 58 0.0013 23.2 2.1 34 77-111 4-37 (125)
410 KOG0037 Ca2+-binding protein, 25.8 2.1E+02 0.0045 22.6 5.2 28 26-53 146-173 (221)
411 COG4649 Uncharacterized protei 25.8 3.2E+02 0.0069 21.2 11.5 19 170-188 178-196 (221)
412 PF12554 MOZART1: Mitotic-spin 25.7 1.2E+02 0.0025 17.8 2.9 21 85-105 18-38 (48)
413 COG3898 Uncharacterized membra 25.5 4.7E+02 0.01 23.1 14.9 174 5-185 189-389 (531)
414 PF04124 Dor1: Dor1-like famil 25.5 3.1E+02 0.0066 23.1 6.7 25 9-33 111-135 (338)
415 PF11123 DNA_Packaging_2: DNA 25.4 2E+02 0.0043 18.6 4.7 27 56-83 14-43 (82)
416 KOG3807 Predicted membrane pro 25.3 3.9E+02 0.0084 23.0 7.0 41 117-157 286-327 (556)
417 smart00777 Mad3_BUB1_I Mad3/BU 25.3 2E+02 0.0042 20.5 4.7 39 56-95 80-123 (125)
418 COG4865 Glutamate mutase epsil 25.1 3.8E+02 0.0083 22.9 6.9 27 72-98 89-115 (485)
419 PF14853 Fis1_TPR_C: Fis1 C-te 25.0 1.4E+02 0.003 17.7 3.3 20 80-99 10-29 (53)
420 cd08304 DD_superfamily The Dea 24.9 1.5E+02 0.0032 18.6 3.6 33 57-90 34-66 (69)
421 COG4003 Uncharacterized protei 24.8 2.1E+02 0.0046 18.9 4.4 26 111-136 36-61 (98)
422 COG1466 HolA DNA polymerase II 24.7 4.2E+02 0.009 22.2 9.4 81 22-105 145-242 (334)
423 cd08785 CARD_CARD9-like Caspas 24.6 2.2E+02 0.0047 18.8 5.7 55 23-82 18-75 (86)
424 PRK11619 lytic murein transgly 24.5 5.8E+02 0.013 23.8 14.1 125 54-185 81-207 (644)
425 TIGR01503 MthylAspMut_E methyl 24.5 1.1E+02 0.0024 27.1 3.9 65 86-159 29-104 (480)
426 PRK14956 DNA polymerase III su 24.3 3.6E+02 0.0077 24.2 7.0 68 18-104 214-281 (484)
427 TIGR03581 EF_0839 conserved hy 24.1 92 0.002 24.7 3.0 46 20-65 188-234 (236)
428 PF10345 Cohesin_load: Cohesin 24.0 5.7E+02 0.012 23.5 9.0 121 11-132 107-251 (608)
429 KOG0624 dsRNA-activated protei 23.9 4.8E+02 0.01 22.6 15.2 54 9-63 160-213 (504)
430 PF04388 Hamartin: Hamartin pr 23.9 6.1E+02 0.013 23.8 13.4 100 18-121 19-124 (668)
431 PLN03192 Voltage-dependent pot 23.9 6.5E+02 0.014 24.1 11.9 47 170-217 630-683 (823)
432 PRK13342 recombination factor 23.7 4.8E+02 0.01 22.5 14.9 46 75-120 231-279 (413)
433 PF03745 DUF309: Domain of unk 23.6 1.9E+02 0.004 17.7 4.3 14 52-65 12-25 (62)
434 cd07229 Pat_TGL3_like Triacylg 23.4 2.1E+02 0.0045 24.8 5.3 130 26-157 101-253 (391)
435 cd08812 CARD_RIG-I_like Caspas 23.2 2.3E+02 0.005 18.7 6.6 33 53-86 48-81 (88)
436 KOG2908 26S proteasome regulat 23.1 3.1E+02 0.0068 23.4 6.0 84 74-157 78-173 (380)
437 PF10475 DUF2450: Protein of u 23.1 1.6E+02 0.0035 24.1 4.5 84 40-126 128-217 (291)
438 PF13646 HEAT_2: HEAT repeats; 23.1 2E+02 0.0044 18.0 7.4 48 37-85 12-59 (88)
439 PRK14963 DNA polymerase III su 22.9 5.6E+02 0.012 23.0 8.3 72 30-105 188-275 (504)
440 PF00619 CARD: Caspase recruit 22.9 2.1E+02 0.0046 18.1 5.7 64 22-91 17-80 (85)
441 PF12069 DUF3549: Protein of u 22.8 4.8E+02 0.01 22.2 9.0 32 104-135 228-259 (340)
442 KOG1585 Protein required for f 22.7 4.3E+02 0.0094 21.7 9.1 14 170-183 238-251 (308)
443 cd08810 CARD_BCL10 Caspase act 22.6 2.4E+02 0.0052 18.6 6.6 57 23-85 18-74 (84)
444 COG1747 Uncharacterized N-term 22.5 6.1E+02 0.013 23.3 9.5 104 79-184 39-156 (711)
445 COG0292 RplT Ribosomal protein 22.5 1.4E+02 0.003 20.9 3.3 38 40-79 74-111 (118)
446 PF04124 Dor1: Dor1-like famil 22.4 1.2E+02 0.0027 25.5 3.8 38 74-111 109-147 (338)
447 KOG2610 Uncharacterized conser 22.3 5.1E+02 0.011 22.3 8.9 106 53-160 117-228 (491)
448 TIGR01716 RGG_Cterm transcript 22.1 3.3E+02 0.0071 20.8 6.0 17 50-66 139-155 (220)
449 cd08315 Death_TRAILR_DR4_DR5 D 21.9 2.6E+02 0.0056 18.8 5.6 48 87-136 47-94 (96)
450 PF07443 HARP: HepA-related pr 21.9 57 0.0012 19.7 1.2 33 85-117 6-38 (55)
451 PF09670 Cas_Cas02710: CRISPR- 21.8 5.2E+02 0.011 22.2 9.0 108 16-129 143-264 (379)
452 cd00280 TRFH Telomeric Repeat 21.8 3.9E+02 0.0084 20.8 7.5 17 81-97 121-137 (200)
453 KOG4414 COP9 signalosome, subu 21.7 3.4E+02 0.0074 20.1 7.2 31 36-66 36-66 (197)
454 KOG2223 Uncharacterized conser 21.5 2.8E+02 0.0062 24.5 5.6 41 26-66 461-501 (586)
455 KOG1920 IkappaB kinase complex 21.3 4.9E+02 0.011 26.2 7.7 164 13-189 860-1056(1265)
456 KOG3677 RNA polymerase I-assoc 20.9 5.9E+02 0.013 22.6 7.4 61 72-133 236-299 (525)
457 KOG4567 GTPase-activating prot 20.6 4.6E+02 0.01 22.2 6.5 57 91-152 263-319 (370)
458 PF03965 Penicillinase_R: Peni 20.6 70 0.0015 22.1 1.7 34 166-201 9-42 (115)
459 PF00356 LacI: Bacterial regul 20.5 1.9E+02 0.004 16.5 4.2 34 4-38 13-46 (46)
460 PRK07452 DNA polymerase III su 20.3 4.9E+02 0.011 21.4 8.8 31 73-105 203-233 (326)
461 KOG1524 WD40 repeat-containing 20.2 4.5E+02 0.0097 24.1 6.7 58 36-96 570-627 (737)
462 PF12816 Vps8: Golgi CORVET co 20.0 2.6E+02 0.0056 21.6 4.8 77 37-115 20-96 (196)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=293.36 Aligned_cols=197 Identities=22% Similarity=0.398 Sum_probs=169.1
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCC-----------------------------------CcHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-----------------------------------NSRFLISRLL 46 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-----------------------------------~~~~~~~~ll 46 (219)
||.++||++|.+|++.|++++|.++|++|.+.|+. ||..+||+||
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 67778888888888888888888888887665554 4555668889
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHH
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 126 (219)
++|+++|++++|.++|++|+.+ |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++.|+++.|.
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 127 ~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
++|+.|.+.|+.||..+||+||++|++.|++ ++|+++|++|.++| +++||+||.+|++.|+
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~------------------~~A~~vf~~m~~~d-~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRM------------------EDARNVFDRMPRKN-LISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCH------------------HHHHHHHHhCCCCC-eeeHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 66666666666666 6666666666666652
Q ss_pred ---------hHHHcCCCCCCc
Q 041894 207 ---------RVVSAGHDADLD 218 (219)
Q Consensus 207 ---------~m~~~g~~pd~~ 218 (219)
+|.+.|+.||.+
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHH
Confidence 466666666654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-38 Score=296.30 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=172.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC------CCCChhhHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK------TPAPPVAWK 75 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~ 75 (219)
||..||+++|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .| |.++||
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 77788888888888888888888888888878888888888888888888888888888887774 46 778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
++|.+|++.|++++|.++|++|.+.|+.|+..+|+++|++|++.|++++|..+|+.|.+.|+.||..+|++||++|++.|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CchhH--HHHH---------------hhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH--------
Q 041894 156 NMDMH--IYDR---------------FQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK-------- 206 (219)
Q Consensus 156 ~~~~~--~~~~---------------~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~-------- 206 (219)
+++.+ +|+. +...+|+.|++++|.++|++|. .+| +++||+||.+|++.|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88766 3333 4444578899999999999885 567 8889999999988884
Q ss_pred -hHHHcCCCCCCcC
Q 041894 207 -RVVSAGHDADLDA 219 (219)
Q Consensus 207 -~m~~~g~~pd~~~ 219 (219)
+|.+.|+.||..|
T Consensus 743 ~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 743 SEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHcCCCCCHHH
Confidence 6888888888653
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-38 Score=294.50 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=198.1
Q ss_pred CCChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041894 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80 (219)
Q Consensus 1 ~P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 80 (219)
.||..||+++|.+|++.|+.+.|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|+.| |.++||++|.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~ 363 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISG 363 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHH
Confidence 48888888888888888888888888888888999999999999999999999999999999999999 99999999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.|.+.|+.|+..+||+||++|++.|+++.|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --HHHHhh------------------------------------------------------------------------
Q 041894 161 --IYDRFQ------------------------------------------------------------------------ 166 (219)
Q Consensus 161 --~~~~~~------------------------------------------------------------------------ 166 (219)
+|+.+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 444311
Q ss_pred --------hhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 167 --------GFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 167 --------~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
..++++|++++|.++|++| .+| +++||+||.+|++.|+ +|.+.|+.||.+|
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d-~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKD-VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 1135688888888899888 788 9999999999999984 7999999999876
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-38 Score=292.99 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=184.7
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSI 77 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~l 77 (219)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .| |.++||++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P-dvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999997 57 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH--hCCCccHHHHHHHHHHHHhcC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR--LGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~y~~~g 155 (219)
|++|++.|++++|.++|++|.+.|+.||..||+++|++|++.|+++.|.++|++|.+ .|+.||..+|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999876 678899999999999999999
Q ss_pred CchhH--HHHHh---------------hhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhhH--------
Q 041894 156 NMDMH--IYDRF---------------QGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFEK-------- 206 (219)
Q Consensus 156 ~~~~~--~~~~~---------------~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~~-------- 206 (219)
++++| +|+.+ ...+|+.|++++|.++|++|.+ +| ..+|+++|.+|++.|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 98877 45443 3335688888888888888884 46 7788888888888873
Q ss_pred -hHHHcCCCCCCc
Q 041894 207 -RVVSAGHDADLD 218 (219)
Q Consensus 207 -~m~~~g~~pd~~ 218 (219)
+|.+.|++||..
T Consensus 673 ~eM~k~G~~pd~~ 685 (1060)
T PLN03218 673 QDARKQGIKLGTV 685 (1060)
T ss_pred HHHHHcCCCCCHH
Confidence 677778888754
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.4e-38 Score=291.09 Aligned_cols=198 Identities=20% Similarity=0.322 Sum_probs=170.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||.+||+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|+.| |+++||++|.+|
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~ 263 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGY 263 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHH
Confidence 5555666666666555555556666666666666666777788999999999999999999999999 999999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~---- 339 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW---- 339 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
++|+++|++|.++| +++||+||.+|++.|+ +|.+.|+.||..|
T Consensus 340 --------------~~A~~vf~~m~~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 340 --------------GEAEKVFSRMETKD-AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred --------------HHHHHHHhhCCCCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 77888888887777 7788888888877773 5777777777654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=281.44 Aligned_cols=215 Identities=16% Similarity=0.270 Sum_probs=188.4
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||..||+++|.+|++.++++.+.++|..|.+.|+.||..+||.||.+|++.|+++.|.++|++|+.| |.++||++|.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -HH-----------HHhhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH---------hHHHcCCCC
Q 041894 161 -IY-----------DRFQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK---------RVVSAGHDA 215 (219)
Q Consensus 161 -~~-----------~~~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~p 215 (219)
+| ..|...++++|+.++|.++|++|. .+| ..||+++|.+|++.|+ .|.+.|+.|
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 23 233344456666666666666664 345 5666666666666664 355666666
Q ss_pred CCc
Q 041894 216 DLD 218 (219)
Q Consensus 216 d~~ 218 (219)
|..
T Consensus 359 d~~ 361 (697)
T PLN03081 359 DIV 361 (697)
T ss_pred Cee
Confidence 653
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.62 E-value=6.8e-16 Score=93.23 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=44.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
+|+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 18899999999999999999999999999999999999999999999875
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=9.6e-15 Score=88.16 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=48.9
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN 51 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~ 51 (219)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999986
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.50 E-value=1e-12 Score=111.78 Aligned_cols=210 Identities=10% Similarity=0.004 Sum_probs=158.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCC-----hhhHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAP-----PVAWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-----~~~~~~l 77 (219)
.++..+...+.+.|+++.|..+|+.+.+.. +++..+++.+...|.+.|++++|.+.++.+.. |.+ ...|..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 467788888889999999999999988753 45677888999999999999999999988752 201 1235567
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
...+.+.|++++|..+|+++.+. .|+ ...+..+...+.+.|+++.|.++++.+.+.+......+++.+..+|++.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 77788889999999999988764 344 446777778888999999999999988776543345678888899999999
Q ss_pred chhHH--HHH-------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhh---hh---------Hh
Q 041894 157 MDMHI--YDR-------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNK---FE---------KR 207 (219)
Q Consensus 157 ~~~~~--~~~-------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~---~~---------~~ 207 (219)
++.++ ++. +...+.+.|+.++|.++|+++.+ |+ ..+++.++..+.. .| +.
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 98772 333 23345678899999999997663 56 6788888888764 22 25
Q ss_pred HHHcCCCCCCc
Q 041894 208 VVSAGHDADLD 218 (219)
Q Consensus 208 m~~~g~~pd~~ 218 (219)
|.+.+++||..
T Consensus 344 ~~~~~~~~~p~ 354 (389)
T PRK11788 344 LVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCCCC
Confidence 67777777753
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.37 E-value=2.9e-11 Score=102.81 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=160.4
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS---RFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~l 77 (219)
+..++..+...+.+.|+++.|..+++.+.+.+-.++ ...+..+...|.+.|++++|..+|+++.. |.+..+++.+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 147 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL 147 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346788899999999999999999999988653322 35688899999999999999999999863 2167899999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
+..+.+.|++++|.+.|+.+.+.+-.++. ..+..+...+.+.|+++.|...++.+.+.. +.+...+..+...|.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 99999999999999999999876533222 235567778889999999999999988765 3346678888899999
Q ss_pred cCCchhH--HHHH---------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 154 SQNMDMH--IYDR---------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 154 ~g~~~~~--~~~~---------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|++++| .|+. +...+++.|+.++|.++++++.+ ++ ...++.+...+.+.|+
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-ADLLLALAQLLEEQEG 297 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhCC
Confidence 9999887 2333 22334688999999999998764 45 5556778888888774
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=5.5e-10 Score=103.22 Aligned_cols=199 Identities=8% Similarity=-0.035 Sum_probs=117.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+...+.+.|+++.|...|..+.+.. +.+...+..+...|.+.|++++|..+|+.+. .|.+..+|..+...+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455555555666666666666666655443 2244455555566666666666666665543 221455666666666
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...|++++|.++++.+.+.. +++...+..+...+.+.|+++.|...+..+.+.+ |+..++..+..+|.+.|+++++.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666665543 3344556666666667777777777777666654 33356666677777777776662
Q ss_pred --HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 --YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 --~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++. +...+.+.|+.++|.+.|+++.+ +++...++.+...+.+.|+
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 222 22334567778888888877653 2215566777666666554
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=6.5e-10 Score=102.73 Aligned_cols=196 Identities=10% Similarity=0.026 Sum_probs=109.5
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
++..+...+.+.|+++.|..+++.+.+.. +++...+..+-..+.+.|++++|...|..+. .| +..++..+...+.+
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444444433 2234444444455555555555555555442 23 33445555555555
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~ 161 (219)
.|++++|.+.+..+.+.. +.+...+..+...|...|+.+.|...++.+.+.. +.+..+++.+...|.+.|+ ..+ .
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 566666665555555432 2344455566666666666666666666666554 3455666666666666666 333 1
Q ss_pred HHH--------------hhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhhHh
Q 041894 162 YDR--------------FQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 162 ~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~~~ 207 (219)
++. +...+++.|+.++|.++|+++.+. + ..++..+...|.+.|+.
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCH
Confidence 221 223345778888888888877743 4 67788888888888754
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.3e-10 Score=94.08 Aligned_cols=181 Identities=15% Similarity=0.072 Sum_probs=137.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH--HhhcCCHH-------------------------H
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVH-------------------------D 57 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~-------------------------~ 57 (219)
.+=|++++-- ..|..+++.-+|+.|++.|...+...--.|+.. |..+.++- -
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3445555443 567888899999999999988777766666553 33332221 1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 58 A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
|.-+|+ ...+ ...+|.++|.++++-...+.|.++|++-.....+.+..+||.+|.+-+-..+ ..++.+|.+..+
T Consensus 196 AdL~~E-~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 ADLLFE-TLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred HHHHHh-hcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 222222 2223 5688999999999999999999999999988889999999999988765443 789999999999
Q ss_pred CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhhHh
Q 041894 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 138 ~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~~~ 207 (219)
.||..|+|+++.+.++.|+++.+. ..|.+++.+|++ |. .-+|.-+|..+++.++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar--------------~aalqil~EmKeiGVePs-LsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDAR--------------KAALQILGEMKEIGVEPS-LSSYHLIIKNFKRESDP 328 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHH--------------HHHHHHHHHHHHhCCCcc-hhhHHHHHHHhcccCCc
Confidence 999999999999999999996555 666777788884 45 56788899888888753
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.06 E-value=2e-10 Score=63.20 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.4
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.|+.||..|||+||++||+.|++ ++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~------------------~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRV------------------DEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCH------------------HHHHHHHHhCc
Confidence 48999999999999999999999 99999999995
No 15
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=3.1e-10 Score=62.44 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=27.2
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888774
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.8e-09 Score=89.34 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 112 (219)
+-+..+|++||.+.|+....+.|.+++++-...+ +..+||.+|.+-.-.-. .++..+|.+..+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 5577899999999999999999999999876321 67889999976554322 6788999999999999999999
Q ss_pred HHHHhcccChhhHH----HHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 113 LKSCTLLVDFRFGE----SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 113 l~~~~~~g~~~~a~----~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+++.++.|+++.|+ +++.+|++.|++|...+|.-+|..++|.++..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 99999999888665 56788999999999999999999999999984
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.92 E-value=3.2e-07 Score=71.31 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=139.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+..+-..+...|+++.|...+++..+.. +.+...+..+-..|...|++++|.+.++... .|.+...+..+-..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 456667778888999999999999988764 4456778888889999999999999998764 2325677888889999
Q ss_pred hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
..|++++|.+.|.+..+....| ....+..+-..+...|+++.|...+....+.. +.+...+..+...+...|++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~---- 185 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY---- 185 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH----
Confidence 9999999999999987653223 33466667778889999999999999887764 23466788888999999999
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++|.+++++... ++....+..+...+...|+
T Consensus 186 --------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 186 --------------KDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred --------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 999988887653 2214455555566655553
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.90 E-value=7.2e-09 Score=93.20 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCcchhhHHHHhhcCCCCCC---eeehhHHHHH------HhhhhHhHHHcCCCCCCcC
Q 041894 171 NGGREASVHEVLDKIPERNG---NVELSSGLAG------CNKFEKRVVSAGHDADLDA 219 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~~~---~~~~n~ll~~------~~~~~~~m~~~g~~pd~~~ 219 (219)
-+|+++.|..++.+|+++.. ..-|..+|-| +.-.-+.|.+.||+||..|
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcch
Confidence 35555999999999998742 2235555555 1222257999999999875
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=3.2e-08 Score=80.82 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..+...+..+.+.++++.+..+++.+.+.. .+++...|..+-..+.+.|+.++|++.+++.- .|.|....+.++..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 34455566666666666666666666665543 33245556666666
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...|+.+++.+++....+.. +.|...+..+-.+|...|+.+.|...++...+.. +.|..+...+-+++...|+.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~--- 264 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRK--- 264 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred HHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccc---
Confidence 666666666666665554432 3444555666666666666666666666655543 33555556666666666666
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcC
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
++|.++..+.
T Consensus 265 ---------------~~A~~~~~~~ 274 (280)
T PF13429_consen 265 ---------------DEALRLRRQA 274 (280)
T ss_dssp -------------------------
T ss_pred ---------------cccccccccc
Confidence 8888887653
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.84 E-value=4.1e-08 Score=88.52 Aligned_cols=151 Identities=12% Similarity=0.005 Sum_probs=120.2
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCC------------------------CCcHHHHHHHHHHHhhcCCHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE------------------------PNSRFLISRLLFIYNNFNLVHD 57 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~------------------------~~~~~~~~~ll~~~~~~g~~~~ 57 (219)
||.+||.++|.-||..|+.+.|. +|..|.-.++ .|...||..|+.+|.+.||+..
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchHH
Confidence 88999999999999999999988 7777763321 3667789999999999887533
Q ss_pred ---HHHHHHhc---------------------------------------------------------------------
Q 041894 58 ---SLCLLDTL--------------------------------------------------------------------- 65 (219)
Q Consensus 58 ---A~~~~~~m--------------------------------------------------------------------- 65 (219)
.++-+..+
T Consensus 102 fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqn 181 (1088)
T KOG4318|consen 102 FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQN 181 (1088)
T ss_pred HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHh
Confidence 22211111
Q ss_pred -----------------C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 66 -----------------K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 66 -----------------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
. .+ ++.+|.+++++-.-+|+.+.|..++.+|.+.|+..+...|..+|-+ .++...++.
T Consensus 182 v~~ntpvekLl~~cksl~e~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~ 257 (1088)
T KOG4318|consen 182 VVDNTPVEKLLNMCKSLVEAP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEF 257 (1088)
T ss_pred ccCCchHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHH
Confidence 0 13 7788888999888899999999999999999999998888888877 788888888
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 128 ~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+...|...|+.|+..|+.--+......|..
T Consensus 258 vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 258 VLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 899999999999999998888777776665
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.79 E-value=1.1e-08 Score=56.10 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
++||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.78 E-value=1e-06 Score=68.43 Aligned_cols=162 Identities=7% Similarity=0.016 Sum_probs=130.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~li~ 79 (219)
...+..+-..+...|+++.|...+.+..+.. +.+...+..+-..+...|++++|...++.... +.....+..+-.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 4567777788899999999999999998875 34567788888899999999999999988742 213456777888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+...|++++|...|.+..+.. +.+...+..+...+...|+++.|...++...+. ...+...+..+...+...|+.
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 219 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDV-- 219 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH--
Confidence 8999999999999999977642 223457778888999999999999999998776 345667777888889999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.++.+.+.
T Consensus 220 ----------------~~a~~~~~~~~ 230 (234)
T TIGR02521 220 ----------------AAAQRYGAQLQ 230 (234)
T ss_pred ----------------HHHHHHHHHHH
Confidence 88888877654
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.69 E-value=3e-08 Score=54.19 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 104 (219)
.+||++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888887
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.68 E-value=2.1e-06 Score=78.33 Aligned_cols=198 Identities=6% Similarity=-0.062 Sum_probs=121.2
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+..+..++...|+++.|...++++.+.. +.+...+..+-..+.+.|+.++|...++... .|.+...+..+...+...
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3444455666778888888888777654 3345566666777777888888887777654 342566777777778888
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--H
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--Y 162 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--~ 162 (219)
|++++|...++.+... .|+.......+..+...|++++|..++..+.+....++...+..+..++.+.|++++++ |
T Consensus 158 g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 158 DKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877766543 23322222222346667788888777777665543344444455566777777776552 2
Q ss_pred HH--------------hhhhccCCcchhh----HHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 163 DR--------------FQGFGFNGGREAS----VHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 163 ~~--------------~~~~~~~~g~~~~----a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
+. +...+.+.|+.++ |...|++... |+....+..+-..+.+.|+.
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 22 2222345566564 6777777663 33244566666666666643
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.65 E-value=3.1e-06 Score=77.21 Aligned_cols=201 Identities=8% Similarity=-0.018 Sum_probs=149.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+.+.|+++.|...++++.+.. +.+...+..+...+...|+.++|...++.+. .|.+...+..+ ..+
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l 187 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSF 187 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHH
Confidence 4556667778889999999999999998763 4456788889999999999999999998763 33134444443 347
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh--
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM-- 159 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~-- 159 (219)
...|++++|...++.+.+..-.++...+..+..++...|++++|...+....+.. ..+...+..+-..|.+.|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH
Confidence 8889999999999998765423344455556778889999999999999988765 3457778888899999999875
Q ss_pred --H--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 160 --H--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 160 --~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
+ .|+. +...+.+.|+.++|...+++... +++...+..+-..|.+.|+.
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3 3433 33334578999999999998764 33245566677777777753
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=1.3e-07 Score=77.15 Aligned_cols=191 Identities=13% Similarity=0.023 Sum_probs=73.2
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
-.-..++++.|...++++.+.+-. +...+..++.. ...+++++|.+++...- .+ +...+..++..+.+.++++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHH
Confidence 344466777777777777766533 45556666666 57777777777765432 33 556677777777777777777
Q ss_pred HHHHHHhHhC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H---H--
Q 041894 91 LTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I---Y-- 162 (219)
Q Consensus 91 ~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~---~-- 162 (219)
.++++..... ..+++...|..+-..+.+.|+.+.|...++...+.. +.|....+.++..+...|+.+.+ + |
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 7777775543 234555666667777777777777777777776664 22455677777777777777543 1 1
Q ss_pred ---------HHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 163 ---------DRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 163 ---------~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
..+...+...|+.++|..+|++... ++++.....+-.++.+.|+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 1122222355666888888887553 32266666777777777753
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.55 E-value=6.7e-06 Score=74.50 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=94.4
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTL-EPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
.++++.|...|+...+.+ ..| ....|+.+-..+...|++++|...|+... .|.+..+|..+-..+...|++++|..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 355666666666666554 223 33445555556666666666666666543 23134455566666666666666666
Q ss_pred HHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-----
Q 041894 93 CFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR----- 164 (219)
Q Consensus 93 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~----- 164 (219)
.|++..+. .| +...|..+-..+...|++++|...++...+.. +.+...+..+-.++.+.|+++++ .|+.
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66665443 23 23455555566666666666666666655543 22344555555666666666655 2222
Q ss_pred ---------hhhhccCCcchhhHHHHhhcCC
Q 041894 165 ---------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 165 ---------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+...+...|++++|.+.|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1112235666699999988744
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=98.51 E-value=1e-05 Score=72.48 Aligned_cols=139 Identities=9% Similarity=-0.090 Sum_probs=106.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
..++++.|...+++..+.. +-+...+..+-..+...|++++|...|++.. .|.+..+|..+-..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4456889999999988775 4467777777778889999999999998864 442567888888999999999999999
Q ss_pred HHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 94 FVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 94 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|++..+. .|+.. .+..++..+...|++++|...+....+...+.+...+..+-.+|...|+.
T Consensus 395 ~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 395 INECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 9998764 45532 23334445667899999999988876654222444567777888899999
No 29
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.49 E-value=1.6e-07 Score=50.09 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677888888888888888888887777664
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.49 E-value=1.1e-05 Score=73.13 Aligned_cols=165 Identities=8% Similarity=-0.108 Sum_probs=107.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.|+.+-..+...|+++.|...+++.++.. +.+...|..+-..+...|++++|...|+... .|.+..+|..+-..+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444445566777777777777776553 2234566666667777777777777776543 22156677777777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
.|++++|...|++..+. .|+ ...+..+-..+.+.|+++.|...++...+.. +.+...|+.+-.+|...|+++.++
T Consensus 412 ~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~- 487 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI- 487 (615)
T ss_pred cCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH-
Confidence 77888887777776553 343 3455556666677777777777777766543 234566777777777777776666
Q ss_pred HHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
+.-.+.++.-+..
T Consensus 488 -------------~~~~~Al~l~p~~ 500 (615)
T TIGR00990 488 -------------EKFDTAIELEKET 500 (615)
T ss_pred -------------HHHHHHHhcCCcc
Confidence 6666666655543
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=1.7e-07 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCC
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN 37 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~ 37 (219)
..+|+++|.+|++.|+++.|.++|+.|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.44 E-value=1.4e-05 Score=75.72 Aligned_cols=193 Identities=8% Similarity=-0.009 Sum_probs=101.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.|..+-.++.. ++...|...+.+..+. .|+......+...+.+.|++++|...|+.+. .| +...+..+...+.+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p-~~~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM-SNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CcHHHHHHHHHHHH
Confidence 33333333333 5666666655555433 2444332222333346677777777776543 23 33445555556666
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH-
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI- 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~- 161 (219)
.|++++|...|+...+.. |+.. .+..+.....+.|++++|...+....+.. |+...|..+-.++.+.|+.++++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 677777777776665442 3322 22222223334466777766666665543 34556666666666667666552
Q ss_pred -HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 -YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 -~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
|+. +...+.+.|+.++|.+.|++..+ |++...+..+-.+|.+.|+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 222 22234456666777777776542 3224556666666666553
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.42 E-value=2.1e-05 Score=74.45 Aligned_cols=180 Identities=9% Similarity=-0.080 Sum_probs=113.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR 79 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~ 79 (219)
|+......+..++.+.|+++.|...|.++... .|+...+..+-..+.+.|+.++|...++.... |.+...+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 44333333334445778888888888876544 33344455556677778888888888876653 202222222333
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.....|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+....+.. +.+...++.+-.++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 344458888888888776643 4666677777777778888888888887776664 2345566666677777888776
Q ss_pred H--HHHH--------------hhhhccCCcchhhHHHHhhcCC
Q 041894 160 H--IYDR--------------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+ .|+. +...+.+.|+.++|+..|++..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 3433 2222346777788888888765
No 34
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.42 E-value=3.7e-07 Score=49.82 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=33.1
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 141 (219)
.+|+++|++|++.|++++|.++|..|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.38 E-value=4.5e-05 Score=65.56 Aligned_cols=169 Identities=7% Similarity=-0.053 Sum_probs=93.0
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC------------------------
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP------------------------ 68 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------------------ 68 (219)
.+...|+++.|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655 335566666677777777777777666655421
Q ss_pred --------------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 69 --------------------APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 69 --------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
.+.....++...+...|+.++|.+++++..+. .||. --.++.+....++.+.+.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHH
Confidence 02333344444445555555555555444431 2222 11122222333444445444
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 129 ~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.+...+.. +-|.....++=..+.+.|++ ++|++.|+...+ |+ ...|-.+-..+.+.|+
T Consensus 317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~------------------~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEW------------------QEASLAFRAALKQRPD-AYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCC
Confidence 44444332 12333344444555555555 999999998774 45 5667777778877775
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.28 E-value=0.00011 Score=71.31 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=107.1
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHH-----------
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWK----------- 75 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~----------- 75 (219)
..-..+...|+++.|...|++..+.. +-+...+..+-..|.+.|++++|...|+... .|.+...+-
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 33444555666666666666665543 2244455555556666666666666665542 221222111
Q ss_pred ---------------------------------HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 76 ---------------------------------SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 76 ---------------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
.+.+.+...|+.++|..+++. .+++...+..+-..+.+.|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 223445555666666666541 233455667777888888999
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHHhh--------------hhccCCcchhhHHHHhhcCC
Q 041894 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ--------------GFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~~~--------------~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.|...++...+.. +.+...+..+...|...|+++.| .++.+. ....+.|+.++|.++|++..
T Consensus 620 ~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 620 AAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999988887765 33677888888889999998877 344422 12236888899999999876
Q ss_pred C
Q 041894 187 E 187 (219)
Q Consensus 187 ~ 187 (219)
.
T Consensus 699 ~ 699 (1157)
T PRK11447 699 P 699 (1157)
T ss_pred h
Confidence 4
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.24 E-value=7.7e-05 Score=69.43 Aligned_cols=174 Identities=7% Similarity=-0.045 Sum_probs=122.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhh-HHHH--HHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSI--IRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~l--i~~~~~ 83 (219)
|...|. .++.|+++.|...|.+..+..-.-....+ .++..+...|+.++|+..++....| +... +..+ ...+..
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 333443 35889999999999999876422112344 8888889999999999999998765 4333 3333 457888
Q ss_pred cCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
.|++++|.++|+++.+. .|+ ...+..+...+.+.++.++|.+.++.+.+. .|+...+-.++..+...++.
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~----- 185 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN----- 185 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH-----
Confidence 89999999999999875 343 456667788889999999999999988765 46666664454444445555
Q ss_pred HHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhh
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~ 205 (219)
.+|.+.++++.+ |++...+.-++.+..+.|
T Consensus 186 -------------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 186 -------------YDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred -------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 568888887774 332444566666666665
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.23 E-value=6.3e-05 Score=67.44 Aligned_cols=151 Identities=11% Similarity=-0.040 Sum_probs=109.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..++..+-..+...|+++.|...|++..+.. +.+...+..+-..+...|++++|...++... .|.+...+..+...+
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 4556666566778899999999999999876 4456678888889999999999999999865 341333444455557
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...|++++|...+++..+.. .|+.. .+..+-.++...|+.++|.+.+..+.... ..+....+.|-..|++.|+-
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred HhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHHH
Confidence 77899999999999976543 45443 35566677789999999999998865442 22344445555667776643
No 39
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.20 E-value=1.8e-05 Score=55.11 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccc--------ChhhHHHHHHHHHHhCCCccHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLV--------DFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
|-..-|..+...+++.....+|+.++++|+ .|+..+|+.+|++-++.. ..-....+++.|..++++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 899999999999998663 23456778999999999999999
Q ss_pred HHHHHHHHHh
Q 041894 144 NNALMNMYAQ 153 (219)
Q Consensus 144 ~~~ll~~y~~ 153 (219)
|+.+|..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.19 E-value=0.00016 Score=70.26 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+..+-..+...|+.++|...|++.. .|.+...+..+...|.+.|++++|...|++..+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566677777777777776653 332445566666777777777777777777654
No 41
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.4e-06 Score=45.35 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=29.2
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
+||+++|++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999875
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.16 E-value=0.00012 Score=68.18 Aligned_cols=147 Identities=6% Similarity=-0.086 Sum_probs=110.0
Q ss_pred hCccccCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCC----hhhHHHHHHHHHhc
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAP----PVAWKSIIRCCTQN 84 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~~li~~~~~~ 84 (219)
.++...+++++|...|+.+.+.+-. |+.. -..+-..|...|++++|+..|+.+.. |.+ ...+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999988632 3321 22246689999999999999998742 201 23456677788999
Q ss_pred CChhHHHHHHHHhHhCC-----------CCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 85 GLLVESLTCFVRMIGSG-----------VYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
|++++|..+++.+.+.. -.|+. ..+..+...+...|++++|..+++.+.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999999999987642 12332 134556678889999999999999987765 4467889999999
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
+...|+++.+
T Consensus 403 ~~~~g~~~~A 412 (765)
T PRK10049 403 LQARGWPRAA 412 (765)
T ss_pred HHhcCCHHHH
Confidence 9999999555
No 43
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.15 E-value=8e-05 Score=64.03 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=103.0
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
++...+......+++......+++.+..++-.++ +|. -..|..++|+.|.+.|.+++++++++.=..-|+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4456688888999999999999999999988876 220 12466799999999999999999999988889999999
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
||+.||+.+.+.|++..|.++...|...+...+..|+.--+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887777767777777667666665
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.11 E-value=0.00015 Score=62.31 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=63.5
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLIS--RLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+.|+++.+...+.++.+. .|+...+. ..-..+...|+.+.|...++... .|.+......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555432 23322221 22334555555555555555543 222344555555555555555555
Q ss_pred HHHHHHhHhCCCCCCc-------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 91 LTCFVRMIGSGVYPDH-------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.+++..+.+.+..++. ..|..++..-....+.+...++++.+.+. .+.+.....++..++.+.|+.+.+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555554432211 12222222222222333333333333221 123444555555666666666444
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.09 E-value=0.00058 Score=58.92 Aligned_cols=116 Identities=6% Similarity=-0.068 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH-HHHHHHh--cccChhhHHHHHHHHHHhC-CCccHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-SVLKSCT--LLVDFRFGESVHACIIRLG-VDLDLYTNN 145 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~--~~g~~~~a~~~~~~m~~~g-~~~~~~~~~ 145 (219)
+...+-.+...+...|+.++|.+++++..+. .||..... .++..+. ..++.+.+.+.++...+.. -.|+.....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4455555666666666666666666665543 23332110 1222222 2344445555554443332 111113444
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc--CC--CCCCeeehhHHHHHHhhhhH
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK--IP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~--m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
++=..+.+.|++ ++|++.|+. .. .++ ...+..+-..+.+.|+
T Consensus 340 sLg~l~~~~~~~------------------~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 340 ALGQLLMKHGEF------------------IEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHcccH------------------HHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCC
Confidence 555556666666 999999993 42 456 6667788777777775
No 46
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00014 Score=62.07 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
...+|+..+...++++.|..+|+++.+. ++...-.+.+.+...++..+|.+++.+..+.. +-+......-.+.|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4566777778889999999999999977 77777788899999999999999999987541 224445555566688999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.+.|..+.+...+.. +.+..+|..|..+|.+.|++ ++|+-.+..++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~------------------e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDF------------------ENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCH------------------HHHHHHHhcCc
Confidence 9999999999988864 34667999999999999999 88888888777
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.08 E-value=0.00054 Score=63.84 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=124.3
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
.+......|+.+.|..++....... +.+...+..+-..+.+.|++++|..+|++.. .|.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3445567899999999999987633 4456678999999999999999999999843 342677788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhh
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~ 167 (219)
++|...+++..+. .|+...+..+-..+...|+.+.|...++...+... .+...+..+..++.+.|..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~---------- 166 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS---------- 166 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh----------
Confidence 9999999998765 44432287888888999999999999999988763 3455566678888888888
Q ss_pred hccCCcchhhHHHHhhcCCC
Q 041894 168 FGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+.+++...
T Consensus 167 --------e~Al~~l~~~~~ 178 (765)
T PRK10049 167 --------APALGAIDDANL 178 (765)
T ss_pred --------HHHHHHHHhCCC
Confidence 777777776554
No 48
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.01 E-value=6.4e-05 Score=61.84 Aligned_cols=150 Identities=10% Similarity=-0.000 Sum_probs=101.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-Chh---hHHHHHHHHHhcCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPV---AWKSIIRCCTQNGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~---~~~~li~~~~~~g~~~ 88 (219)
.+...|+++.|.++... + .+.......+..|.+.++++.|.+.++.|++-. |.+ ...+++........++
T Consensus 111 i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 45567888888777653 2 356667778888899999999999999887431 322 2333444444445789
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
+|+.+|+++.+. ..++..+.+.+.-+....|++++|+.++.+..... +-|..+...++.+..-.|+..
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~---------- 252 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPT---------- 252 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TC----------
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCCh----------
Confidence 999999997654 56777888888888889999999999988765443 235556666777777777763
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
+.+.+++..++.
T Consensus 253 -------~~~~~~l~qL~~ 264 (290)
T PF04733_consen 253 -------EAAERYLSQLKQ 264 (290)
T ss_dssp -------HHHHHHHHHCHH
T ss_pred -------hHHHHHHHHHHH
Confidence 567778887773
No 49
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.98 E-value=6.2e-05 Score=58.47 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+-+-|.+++++|..+|+.||..++..|++.|++.+..=
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 55678999999999999999999999999999988773
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.98 E-value=0.00085 Score=53.11 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=115.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh---hHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV---AWKS 76 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~---~~~~ 76 (219)
...+-.....+.+.|+++.|...|+.+.+..- .| ....+..+-.+|.+.|++++|...++.+. .|.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34555666678889999999999999876541 11 12466777789999999999999999875 331222 3444
Q ss_pred HHHHHHhc--------CChhHHHHHHHHhHhCCCCCCcc-cHH-----------------HHHHHHhcccChhhHHHHHH
Q 041894 77 IIRCCTQN--------GLLVESLTCFVRMIGSGVYPDHN-VFP-----------------SVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 77 li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-t~~-----------------~ll~~~~~~g~~~~a~~~~~ 130 (219)
+-.++... |++++|.+.|+...+. .|+.. .+. .+-..+.+.|+++.|...+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444443 6789999999998764 34432 111 23455678899999999999
Q ss_pred HHHHhCC--CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 131 CIIRLGV--DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 131 ~m~~~g~--~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
...+... ......+..+..+|.+.|++ ++|..+++.+..
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~------------------~~A~~~~~~l~~ 231 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLK------------------DLAQDAAAVLGA 231 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHh
Confidence 8876642 12356888999999999999 899888877653
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.94 E-value=0.00051 Score=59.29 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=38.4
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+.|+.+.|.+.+.+..+..-.+....--+....+...|+.+.|...++.+. .|.+..++..+...+...|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 33445555555555544332211111122222344444555555555554443 2213344445555555555555555
Q ss_pred HHHHHhHhCC
Q 041894 92 TCFVRMIGSG 101 (219)
Q Consensus 92 ~~~~~m~~~g 101 (219)
+.+..+.+.+
T Consensus 208 ~~l~~l~k~~ 217 (409)
T TIGR00540 208 DIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHcC
Confidence 5555555444
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.93 E-value=0.00068 Score=63.26 Aligned_cols=150 Identities=9% Similarity=-0.032 Sum_probs=120.6
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--------CChhhHHHHHHHH
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--------APPVAWKSIIRCC 81 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~li~~~ 81 (219)
.|-++.+.+++.++.+.|+.|...+.+.-.++-..+-++|...+++++|+.++.++-.+ .+......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 34578888999999999999999997655668899999999999999999999987421 0233457899999
Q ss_pred HhcCChhHHHHHHHHhHhCC-----------CCCC--cc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSG-----------VYPD--HN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g-----------~~p~--~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
...+++++|..+++.+.+.- -.|| .. .+..+...+...|++++|++.++.+.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 99999999999999998631 0122 22 23446777889999999999999997765 5688899999
Q ss_pred HHHHHhcCCchhH
Q 041894 148 MNMYAQSQNMDMH 160 (219)
Q Consensus 148 l~~y~~~g~~~~~ 160 (219)
-+.+...|.+++|
T Consensus 457 A~v~~~Rg~p~~A 469 (822)
T PRK14574 457 ASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCHHHH
Confidence 9999999999443
No 53
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=5e-05 Score=65.30 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=99.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
+.+....+++.+....+++++..++-..+.+ ....-..|..++++.|.+.|..+.+..++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5678888999999888999999999998876 34444567789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhh
Q 041894 148 MNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKF 204 (219)
Q Consensus 148 l~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~ 204 (219)
|+.+.+.|++ ..|.++...|... ++..|+.-.+.+|.+-
T Consensus 145 md~fl~~~~~------------------~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNY------------------KSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccH------------------HHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999 9999999887743 2156666666666555
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.0002 Score=58.98 Aligned_cols=118 Identities=10% Similarity=-0.046 Sum_probs=91.4
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccCh
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDF 122 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~ 122 (219)
..+...|++++|++++..- . +.......++.|.+.++++.|.+.++.|.+. ..| .+..-+..++.. ...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--G-SLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc--C-cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 4677789999999988765 4 6677888999999999999999999999864 233 455556665543 2368
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..|..+|+++... ..++..+.|.+..+....|++ ++|++++.+....+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~------------------~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY------------------EEAEELLEEALEKD 231 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H------------------HHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH------------------HHHHHHHHHHHHhc
Confidence 9999999998654 568889999999999999999 99999999866543
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00044 Score=56.92 Aligned_cols=126 Identities=9% Similarity=0.015 Sum_probs=94.2
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHH-HHHHHHHhcC
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWK-SIIRCCTQNG 85 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~-~li~~~~~~g 85 (219)
.+=++|.+.|.+.+|++.++.-.+. .|-+.||-.|-..|.+..++..|+.+|.+-- -| -.+||- -+-+-+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHH
Confidence 4556788899999999998887766 4556677778889999999999999997643 35 334444 3456666678
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
+.++|.++|+...+.. +.+......+-..|.-.++.+.|...+..+.+.|+.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 8999999998876642 234445555566677778899999999999999875
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.88 E-value=0.0045 Score=51.11 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=122.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
|...=..+.+.|+.+.|...|.+..+.. +.+...|+.+=..|...|++++|...|+... .|.+..+|..+-..+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444445677899999999999888765 4467888888899999999999999998764 342567888888888899
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-HHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH-IYD 163 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~-~~~ 163 (219)
|++++|.+.|+...+. .|+..........+...++.++|...++..... ..|+...+ .+... ..|+.... .++
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~~--~lg~~~~~~~~~ 219 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVEF--YLGKISEETLME 219 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHHHH--HccCCCHHHHHH
Confidence 9999999999887653 465432222233344567888998888665432 23333222 22222 34444322 111
Q ss_pred H---------------------hhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhh
Q 041894 164 R---------------------FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKF 204 (219)
Q Consensus 164 ~---------------------~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~ 204 (219)
. +.....+.|+.++|...|++...-+ +. +.+-.-|+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~--~~~e~~~~~~ 278 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY--NFVEHRYALL 278 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc--hHHHHHHHHH
Confidence 1 2222357888899999998877655 33 4444444433
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.87 E-value=0.0022 Score=53.90 Aligned_cols=179 Identities=9% Similarity=-0.084 Sum_probs=110.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR-------FLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVA 73 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~ 73 (219)
+........+|.+.|++.....+...|.+.|.-.+. .+|..++.-....+..++-...|+..+ .. ++..
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~-~p~l 265 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN-DPEL 265 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc-ChhH
Confidence 344556666666777777777777777766654443 256666666666666666666666665 22 4455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH-HHHhCCCccHHHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC-IIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~ll~~y~ 152 (219)
-.+++.-+..-|+.++|.++..+-.+.+.-|.. ..+-.+.+-++.+.-.+..+. +.+.+-.| ..+.+|=..|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~ 339 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLAL 339 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHH
Confidence 566677777777777777777776666555551 112233344454444444443 33333333 45666666666
Q ss_pred hcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhHhH
Q 041894 153 QSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEKRV 208 (219)
Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~~m 208 (219)
+.+.+ .+|.+.|+.-. .++ ..+|+-+-++|.+.|+..
T Consensus 340 k~~~w------------------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 340 KNKLW------------------GKASEALEAALKLRPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhHH------------------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence 66666 99999998644 345 788999999998888643
No 58
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00011 Score=51.25 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
..-|..|...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. . |. ..-.++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~--------------l-D~---------~~ie~k 84 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE--------------L-DS---------EDIENK 84 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc--------------c-cc---------hhHHHH
Confidence 4456677777888888888888888888 888888888887665543 1 11 111235
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
.-+.+.+|.+|..++++|+..||+.++.+..+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 66788899999999999999999999988764
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0026 Score=49.97 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=125.7
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
+=-+|-+.|++..|..-+++.++.. +.+..+|..+-..|-+.|+.+.|.+-|+..- .|.+-.+.|..=.=+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3446778899999999999998876 4466788889999999999999999998743 332556666666667888999
Q ss_pred hHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhh
Q 041894 88 VESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~ 166 (219)
++|...|++-...---| -..||..+--+..+.|+++.|+..++.-.+... -...+.-.+-....+.|+.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y--------- 189 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY--------- 189 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc---------
Confidence 99999999876553222 235788877777899999999999998777642 2345666777788888888
Q ss_pred hhccCCcchhhHHHHhhcCCCCCCeeehhHHHH
Q 041894 167 GFGFNGGREASVHEVLDKIPERNGNVELSSGLA 199 (219)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~ 199 (219)
-.|+-++++...+. ..+=.+|.-
T Consensus 190 ---------~~Ar~~~~~~~~~~-~~~A~sL~L 212 (250)
T COG3063 190 ---------APARLYLERYQQRG-GAQAESLLL 212 (250)
T ss_pred ---------hHHHHHHHHHHhcc-cccHHHHHH
Confidence 77777777766554 333333333
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.00026 Score=62.71 Aligned_cols=180 Identities=8% Similarity=-0.014 Sum_probs=102.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHH---HH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII---RC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li---~~ 80 (219)
+.||.++=++|+-.++.+.|.+.|.+.++.. +...++|+.+=.-+.....+|.|..-|+..-.. |+..||++- -.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHhhhhh
Confidence 4566666666666666666666666655443 224455555544555555566666666655555 555555533 34
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
|.+.++++.|+-.|+.-.+ |.| |.+....+...+-+.|+.++|.++++.........-..-|.. ...+-..++.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~-~~il~~~~~~-- 573 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR-ASILFSLGRY-- 573 (638)
T ss_pred eeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH-HHHHHhhcch--
Confidence 5555666666655544332 444 334444455555566666666666666554443333333333 2333344555
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++|...+++.++ |++...|-.+-..|.+.|+
T Consensus 574 ----------------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 574 ----------------VEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred ----------------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 999999998884 4436677777778877774
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0019 Score=53.14 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=130.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCh------hhHHHHHHHHHhcCChhH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPP------VAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~------~~~~~li~~~~~~g~~~~ 89 (219)
+.+.++|.++|-.|.+.. +-+..+.-+|=+.|-+.|.+|.|+++.+.+- +| |. .+.--|-+-|..+|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999843 2244455666678889999999999998865 55 53 233446677888899999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH----HHHHHHHHHHhcCCchhHHH--H
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY----TNNALMNMYAQSQNMDMHIY--D 163 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~y~~~g~~~~~~~--~ 163 (219)
|.++|..+.+.+ +.-....--|+..|-...+|+.|..+-..+.+.+-++... -|.-|-..+....+++.+.+ .
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999887754 2223356678899999999999999998888877655422 22223333334455555532 1
Q ss_pred H--------------hhhhccCCcchhhHHHHhhcCCCCCCe----eehhHHHHHHhhhhH
Q 041894 164 R--------------FQGFGFNGGREASVHEVLDKIPERNGN----VELSSGLAGCNKFEK 206 (219)
Q Consensus 164 ~--------------~~~~~~~~g~~~~a~~l~~~m~~~~~~----~~~n~ll~~~~~~~~ 206 (219)
+ +....-..|+.+.|.+-++...+.| . .+-..+..+|.+.|+
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhCC
Confidence 1 1122346888899999999888765 3 346778888888885
No 62
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=0.00098 Score=59.16 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=144.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-+.+-..|++.+|..++..+++.. +-....|-.+-.++.+.|+.+.|...|.+.- .| +.....+-+..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP-~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP-DLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc-chhhhhcchhHH
Confidence 3577888888888999999999999998775 3356678888899999999999998887654 45 545444444444
Q ss_pred Hh-cCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCch
Q 041894 82 TQ-NGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 82 ~~-~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~y~~~g~~~ 158 (219)
.+ .|++.+|...|.+-.+. .|.. ..|+.|-..+-..|++-.|.+-|++.++. .|+ ...|-.|=..|-..+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 44 48889998888776654 4553 57788877888889999999999987765 454 345666667777777777
Q ss_pred hH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 159 MH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 159 ~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+| +|.. |.-.+++.|+++.|.+-+++..+ |+....||-|-+|+...|+
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 77 3433 22224689999999999998774 4534568888888877774
No 63
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.64 E-value=0.00044 Score=53.84 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=64.5
Q ss_pred hhHHHHHHhCcccc-----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHH
Q 041894 4 TKTLINLLKNPVSI-----KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78 (219)
Q Consensus 4 ~~~~~~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li 78 (219)
..+|..+|..+.+. |..+-...-+..|.+.|++.|..+|+.||+.+=+..-. -..+|+.+ .
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~------------F 112 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAE------------F 112 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHH------------h
Confidence 34555555554433 45555555566666666666666666666655432211 11122111 1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
..| -.+-+-|.+++++|...|+.||..|+..+++.+++.+..
T Consensus 113 ~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111 125677899999999999999999999999999987754
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.0013 Score=54.13 Aligned_cols=73 Identities=7% Similarity=-0.070 Sum_probs=47.8
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHH-HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPS-VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
..+.+.|..++..-.+. .|+.+--++ +=+.....|+++.|.+.++.+.+....--..+...|..+|...|+.+
T Consensus 193 ~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 193 SSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 44566666666554432 233322222 23445567888888888888888776666778888888888888884
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.63 E-value=0.0046 Score=48.00 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHhHhCCCCC-CcccH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC-TQNGL--LVESLTCFVRMIGSGVYP-DHNVF 109 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p-~~~t~ 109 (219)
+.|...|..+-..|...|++++|...|+... .|.+...+..+-.++ ...|+ .++|.+++++..+. .| +...+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al 147 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTAL 147 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHH
Confidence 3455566666667777777777777776543 232556666666553 45555 36777777776554 23 33455
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 110 PSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 110 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+-..+...|++++|...|+.+.+..
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555666667777777777777766654
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.61 E-value=0.0018 Score=47.61 Aligned_cols=107 Identities=5% Similarity=-0.056 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
+.++++..+. .|+. +..+-..+...|++++|...|+... .|.+..+|..+-..+.+.|++++|...|+...+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3455555543 3443 4456667789999999999998765 3327788999999999999999999999998764
Q ss_pred CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 102 VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 102 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.| +...+..+-.++...|+.++|...+....+..
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45 55677788888889999999999999887754
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.60 E-value=0.0068 Score=50.01 Aligned_cols=155 Identities=6% Similarity=-0.108 Sum_probs=102.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...|+.+=..+.+.|+++.|...|+...+.. +-+..+|..+-..+...|++++|.+.|+... .| +..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-NDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 35778888889999999999999999998764 3356677888888899999999999998764 34 32212222223
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh---CC--C-ccHHHHHHHHHHHHhc
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL---GV--D-LDLYTNNALMNMYAQS 154 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~--~-~~~~~~~~ll~~y~~~ 154 (219)
....+++++|...|.+.... ..|+...+ .+.. ...|+...+ ..+..+.+. .+ . .....|.-|-..|.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 34567899999999775432 23443222 2222 234555544 344444321 11 1 1245788888999999
Q ss_pred CCchhHH--HHH
Q 041894 155 QNMDMHI--YDR 164 (219)
Q Consensus 155 g~~~~~~--~~~ 164 (219)
|+.++|+ |+.
T Consensus 250 g~~~~A~~~~~~ 261 (296)
T PRK11189 250 GDLDEAAALFKL 261 (296)
T ss_pred CCHHHHHHHHHH
Confidence 9999883 544
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.0024 Score=45.81 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+......+...+.+.|++++|...|+... .|.+...|..+-..+.+.|++++|..+|+...+.. +.+...+..+-..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 33455666778888899999999988764 23266788888888888899999999998866543 3355667777778
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHH
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
+...|+.+.|...++...+.. |+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 888899999999998877754 44444
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.58 E-value=0.0032 Score=46.26 Aligned_cols=101 Identities=10% Similarity=-0.086 Sum_probs=77.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+...-.++.+.|+++.|...|....+.. +.+...|..+-..+.+.|++++|...|+... .|.+..++..+-.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344556678889999999998887765 4477788888888899999999999988765 333678888888888889
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
|++++|...|+.-.+. .|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHH
Confidence 9999999999887653 56654443
No 70
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.0052 Score=52.98 Aligned_cols=158 Identities=10% Similarity=-0.030 Sum_probs=97.9
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+...|++++|+..++.+. .|+|+.-+....+-+.+.++.++|.+.++.++.. .|+ ....-.+-+++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445677777777777764 4535555566667777777777777777776654 455 3344455666777777777
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCeee---hhHHH
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNVE---LSSGL 198 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~---~n~ll 198 (219)
|..++....... +-|...|..|-.+|...|+..++.-. -.+.++..|++++|..++..-++. + ..+ +..-|
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-~AE~~~~~G~~~~A~~~l~~A~~~~~~~-~~~~aR~dari 469 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-RAEGYALAGRLEQAIIFLMRASQQVKLG-FPDWARADARI 469 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHhccCC-cHHHHHHHHHH
Confidence 777766655443 45666777777777777777433211 112223456669998888765533 3 222 55667
Q ss_pred HHHhhhhHhHHH
Q 041894 199 AGCNKFEKRVVS 210 (219)
Q Consensus 199 ~~~~~~~~~m~~ 210 (219)
+...+...++++
T Consensus 470 ~~~~~~~~~~k~ 481 (484)
T COG4783 470 DQLRQQNEEFKP 481 (484)
T ss_pred HHHHHHHHHHHh
Confidence 776666666554
No 71
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.55 E-value=0.0044 Score=55.19 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=103.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
++|..+--.|...|+++.|..-+.+.++.. +.=...|+.|-.++-..|++.+|+..++..- .|--..+-|.|-..|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555666666777766666666443 1123456666666666676666666665532 1102344555566666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCchhH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~y~~~g~~~~~ 160 (219)
..|.+++|..+|..-.+ +.|.. ..++.|-..|-+.|++++|...+++..+ ++|+ ...|+.+=..|-..|+...|
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 66666666666655433 33432 3455555566666666666666665544 3343 33455555555555555554
Q ss_pred --HHHH-hh-------------hhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHH
Q 041894 161 --IYDR-FQ-------------GFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGC 201 (219)
Q Consensus 161 --~~~~-~~-------------~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~ 201 (219)
+|.. |+ -..-..|.|.+|.+-+++.. +||....|.-+++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 2322 11 11124566699998888755 345233444444443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.54 E-value=0.0076 Score=50.55 Aligned_cols=154 Identities=11% Similarity=-0.003 Sum_probs=100.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHH---HHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChh
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISR---LLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~---ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~ 88 (219)
+...|+++.|..++++..+.. +.+...+.. +.......+..+.+.+.+..... |........+-..+...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 456688888888888887653 334444442 22222234556666666654321 202233444556778889999
Q ss_pred HHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCC-CccH--HHHHHHHHHHHhcCCchhHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGV-DLDL--YTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
+|...+++..+. .|+ ...+..+-..+...|++++|...++...+... .|+. ..|-.+-..+...|++
T Consensus 132 ~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~------- 202 (355)
T cd05804 132 RAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY------- 202 (355)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH-------
Confidence 999999888764 344 45667777788888999999998887665432 2332 3455677788888888
Q ss_pred hhhhccCCcchhhHHHHhhcCCCC
Q 041894 165 FQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
++|.+++++....
T Consensus 203 -----------~~A~~~~~~~~~~ 215 (355)
T cd05804 203 -----------EAALAIYDTHIAP 215 (355)
T ss_pred -----------HHHHHHHHHHhcc
Confidence 9999999886543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.50 E-value=0.0045 Score=54.65 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=122.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc-----C-CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhcC-------CCCC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-----L-EPNSRF-LISRLLFIYNNFNLVHDSLCLLDTLK-------TPAP 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-----g-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~ 70 (219)
.+++.|=..|++.|+++.|+..++...+- | ..|.+. -++.+...++..+.+++|..+++..- .+.+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 46666667899999999999888876542 2 223333 35677778899999999998876532 2213
Q ss_pred ---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCC-cccHHHHHHHHhcccChhhHHHHHHH----HHHhC
Q 041894 71 ---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPD-HNVFPSVLKSCTLLVDFRFGESVHAC----IIRLG 136 (219)
Q Consensus 71 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~----m~~~g 136 (219)
..+++.|=..|.+.|++++|.++|++.... +..+. ...++-+-..|.+.+..+.|.++|.+ |+..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999996432 22333 45677788888999999999988877 44455
Q ss_pred CC--ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 137 VD--LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 137 ~~--~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.. ....+|..|...|-+.|++ |+|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~------------------e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNY------------------EAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccH------------------HHHHHHHHHHH
Confidence 43 2478899999999999999 88888876543
No 74
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.00071 Score=55.43 Aligned_cols=142 Identities=10% Similarity=0.041 Sum_probs=87.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRC 80 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~ 80 (219)
.+|..+++..-+.+..+.|..+|.+.++.+ ...+.+...++|.. ...++.+.|.++|+..- .. +...|...|+-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 467777777777777888888888877554 34444444444433 33455666888877643 34 66777777777
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
+.+.|+.+.|..+|+..... +.++. ..|...++.=.+.|+++....+.+.+.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77788888888888776644 23222 36777777777777777777777766654 34433444444433
No 75
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0028 Score=54.40 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=116.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
|+-.++.+.|...|.+.++.+ +.....|+.+=.-|..-++...|.+-++... +. |-.+|=.|=++|.-.+.+.-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHH
Confidence 344557788888998888765 3355677777778999999999999888654 45 888999999999999999999
Q ss_pred HHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 91 LTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 91 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+-+|++-.. ++| |...|.+|-++|.+.++.++|...+......| ..+...+..|-+.|-+.++...|
T Consensus 418 LyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 418 LYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 999988665 455 67899999999999999999999999887776 56778899999999999998444
No 76
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.42 E-value=0.0042 Score=44.53 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=84.2
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.....+...+.+.|+++.|...|..+.+.+ +.+...+..+-..|.+.|++++|...++... .|.+...+..+-..+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555667788999999999999998865 5577888889999999999999999998764 2315677777888999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 114 (219)
..|+.++|...|+...+. .|+...+..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 999999999999887764 466655544433
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.41 E-value=0.0043 Score=54.76 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=119.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc-----C-CCCcHHHH-HHHHHHHhhcCCHHHHHHHHHhcC-------CCCC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-----L-EPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK-------TPAP 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~ 70 (219)
.++..+-..|...|+++.|+.++.+..+. | ..|...+. +.+=..|...+.+++|..+|+.+- .+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~-~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE-D 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC-C
Confidence 45556778999999999999999988765 2 23444433 335568888999999998888762 22 2
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHhH---hC--CCCCC-c-ccHHHHHHHHhcccChhhHHHHHHHHHHh---C
Q 041894 71 ----PVAWKSIIRCCTQNGLLVESLTCFVRMI---GS--GVYPD-H-NVFPSVLKSCTLLVDFRFGESVHACIIRL---G 136 (219)
Q Consensus 71 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~--g~~p~-~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g 136 (219)
..+++.|-.+|.+.|++++|..++++-. +. |..+. . .-++.+...|+..+.+++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3567777788999999999999888743 22 22222 2 35677788888999999999998774322 1
Q ss_pred CCcc----HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 137 VDLD----LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 137 ~~~~----~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.++ ..+++.|=..|-..|++ ++|+++|++..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~------------------~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKY------------------KEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcch------------------hHHHHHHHHHH
Confidence 2222 56889999999999999 88888887654
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.021 Score=45.63 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=103.6
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
++...|+-+....+...... ....|............+.|++..|...|.+.. .+ |-.+||.+=-+|-+.|+.++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhH
Confidence 33444554444444333221 123344556667778888888888888888765 34 77888888888888888888
Q ss_pred HHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 90 SLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
|..-|.+-.+- .|+ ...++.+--.+.-.|+.+.|+.++..-...+ .-|..+-..|.-+....|++
T Consensus 153 Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~----------- 218 (257)
T COG5010 153 ARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF----------- 218 (257)
T ss_pred HHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh-----------
Confidence 88888776653 333 3456666667777788888888877766554 34666777777778888888
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
+.|+++...=..
T Consensus 219 -------~~A~~i~~~e~~ 230 (257)
T COG5010 219 -------REAEDIAVQELL 230 (257)
T ss_pred -------HHHHhhcccccc
Confidence 999998875443
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.38 E-value=0.006 Score=47.36 Aligned_cols=106 Identities=9% Similarity=-0.001 Sum_probs=85.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhhcCC--HHHHHHHHHhcC--CCCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI-YNNFNL--VHDSLCLLDTLK--TPAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~A~~~~~~m~--~~~~~~~~~~l 77 (219)
|...|..+-..+...|+++.|...|++..+.. +.+...+..+-.+ |.+.|+ .++|..++++.. .|.+..++..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 56778888889999999999999999998876 4467777777765 577777 599999999875 34377889999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
-..+.+.|++++|...|+.+.+. .+|+..-+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 99999999999999999998865 356654443
No 80
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.38 E-value=0.0046 Score=53.00 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=98.6
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
+-..++++.+...++++.|..+|+++.+.. |+. ...|...+...++-.+|.+++++.- .|.|....+.-.+-+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344567788888899999999999999875 543 4457777777888889999987754 2325566666667788
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
+.++++.|+.+.++..+. .|+. .+|..|..+|.+.|+++.|...+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999998764 6765 599999999999999999998888764
No 81
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0045 Score=53.22 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=81.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
..|+++.|...+.+.++..-.-....||.=+ .+-..|++++|++.|-.+. .. +..+.--+-+-|-...++.+|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHH
Confidence 4577888888887777655333333333322 4556778888888877664 23 44444455566666667777776
Q ss_pred HHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 93 CFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 93 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
++ |+...+.| |..+.+-|-+-|-+-|+-.+|.+.+=.--+. ++.|..+...|-.-|....-+
T Consensus 580 ~~--~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 580 LL--MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HH--HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 66 33333444 4566666777777777777777665443222 344566666666666655555
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.0024 Score=41.23 Aligned_cols=80 Identities=9% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
.+...+...|++++|..+|++..+.. +.+...+..+-..+...++++.|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555544321 1112334444444445555555555555544433 122234445555555555
Q ss_pred Cc
Q 041894 156 NM 157 (219)
Q Consensus 156 ~~ 157 (219)
+.
T Consensus 83 ~~ 84 (100)
T cd00189 83 KY 84 (100)
T ss_pred hH
Confidence 55
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.36 E-value=0.013 Score=54.01 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=90.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
++.++-.|-....+.|.+++|+.+++...+. .| +......+...+.+.+++++|....++.- .|.+....+.+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4556666666777778888888888877755 34 34455666777778888888888777654 3424456666667
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++.+.|++++|..+|++.... .|+ ..++..+-.++-..|+.++|...|......
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777788888888888887762 344 567777777777778888888887776544
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0023 Score=41.35 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
+...+.+.|++++|...|.... .|.+...+..+-..+...|++++|.+.|....+.. +.+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 3344444555555555554432 11022344444555555555555555555544322 11223444444555555555
Q ss_pred hhHHHHHHHHH
Q 041894 123 RFGESVHACII 133 (219)
Q Consensus 123 ~~a~~~~~~m~ 133 (219)
+.|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.34 E-value=0.0013 Score=43.52 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=57.7
Q ss_pred cCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|+++.|..+++++.+..-. ++...+-.+-.+|.+.|++++|..+++..+ .+.+....-.+-.+|.+.|++++|.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 47889999999999887642 345555568889999999999999998743 1203233334468888999999999988
Q ss_pred HH
Q 041894 95 VR 96 (219)
Q Consensus 95 ~~ 96 (219)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 86
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0027 Score=52.03 Aligned_cols=126 Identities=7% Similarity=0.040 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
.+|-.+|...-|.+.++.|+.+|.+....+ .+....++|.-++ .++.+.|.++|+...+. +.-+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999876430 2233344443333 57788899999997765 55677789999999
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccH---HHHHHHHHHHHhcCCchhH--HHHHhhhh
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDL---YTNNALMNMYAQSQNMDMH--IYDRFQGF 168 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~y~~~g~~~~~--~~~~~~~~ 168 (219)
+.+.++.+.++.+|+..... +.++. ..|...++.=.+.|+++.+ +++.+.++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998665 33333 6999999999999998765 55554443
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.29 E-value=0.0093 Score=57.40 Aligned_cols=182 Identities=7% Similarity=0.021 Sum_probs=82.2
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc-CC---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CCC-hhhHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LE---PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-PAP-PVAWKSIIR 79 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~-~~~~~~li~ 79 (219)
.|-.-+.-.-+.+..+.|++++++.+.. ++ .--..+|.++++.-.--|.-+...++|+...+ . | ...|..|..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 3444444445555555555555555432 11 11223455555555555555555555554431 1 2 234555555
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhcCCch
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~y~~~g~~~ 158 (219)
-|.+.+..++|-++|+.|.+. +.-...+|......+.+....+.|..++....+.=.+ -......-....--+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 555555555555555555543 1122334444455555544444444444443322111 01122222222233344444
Q ss_pred hH--HHHH-hhhhc-------------cCCcchhhHHHHhhcCCCCC
Q 041894 159 MH--IYDR-FQGFG-------------FNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 159 ~~--~~~~-~~~~~-------------~~~g~~~~a~~l~~~m~~~~ 189 (219)
+. +|+. +.+|. -+.|+.+.++++|++.....
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 32 3322 22221 13444499999999877543
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.27 E-value=0.011 Score=43.29 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHH-HHH--HHHHHhhcCCHHHHHHHHHhcCC--CCCh----hhHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL-ISR--LLFIYNNFNLVHDSLCLLDTLKT--PAPP----VAWK 75 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~-~~~--ll~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~ 75 (219)
..|..++.+. ..++...+...++.+.+.. +.+... ... +-..+...|++++|...|+.... | |. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHH
Confidence 3455666665 3677777777777777653 223222 222 33566777888888888877652 2 22 2344
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.|-..+...|++++|+..++......+ ....+...=+.+.+.|+.+.|+..|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456677777888888877765433322 223455566677777888888777654
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.0086 Score=43.88 Aligned_cols=123 Identities=10% Similarity=0.068 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc--cHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN--VFPS 111 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ 111 (219)
..|..++..+ ..++...+...++.+. .| +. .+.-.+-..+...|++++|...|+......-.|+.. ..-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566666666 4888888888888876 23 22 223334478888999999999999998876223222 2333
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
+-..+...|+++.|...++...... .....+..+=+.|.+.|+. ++|+..|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~------------------~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDY------------------DEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCH------------------HHHHHHHHH
Confidence 5677788999999999997754433 3344566677899999999 999998874
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0078 Score=48.00 Aligned_cols=125 Identities=15% Similarity=0.042 Sum_probs=101.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
..+...+...+.|++..|...+.+..+.. ++|...|+.+=-+|-+.|+.++|+.-|.+.. .+.+....|.+--.+.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 44456778889999999999999987665 7899999999999999999999999998754 22155777777777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
.|+++.|..++..-...+ .-|..+-..+--.....|+++.|+.+...-
T Consensus 181 ~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 181 RGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred cCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 899999999999887664 235666777788889999999999986543
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.21 E-value=0.013 Score=40.51 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCcccHHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLK 114 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~ 114 (219)
+-.+...+.+.|++++|.+.|..+. .|.+ ...+..+-..+.+.|++++|...|+...... -......+..+-.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555566666666666666553 2201 2344456666666666666666666655431 0111234455555
Q ss_pred HHhcccChhhHHHHHHHHHHhC
Q 041894 115 SCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++.+.|+.+.|...++.+.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5666666666666666666554
No 92
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.004 Score=55.40 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC---Ch-----------------------
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA---PP----------------------- 71 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~---~~----------------------- 71 (219)
.++|...|+.+. .-+..+.++...+=.+|...++.++|+++|+..+. |- +.
T Consensus 335 ~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666666632 22233445556666677777777777777776641 10 33
Q ss_pred --------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH
Q 041894 72 --------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142 (219)
Q Consensus 72 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 142 (219)
.+|-++=++|.-.++.+.|.+.|+.-.+ +.| ..++|+.+=.=+.....+|.|...|..- +..|..
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~r 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPR 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCch
Confidence 4455555555555555555555544332 233 2334433333333334444444444332 334444
Q ss_pred HHHHH---HHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 143 TNNAL---MNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 143 ~~~~l---l~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
.||+. -..|.|.+++ +.|+-.|++-.+-
T Consensus 488 hYnAwYGlG~vy~Kqek~------------------e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKL------------------EFAEFHFQKAVEI 518 (638)
T ss_pred hhHHHHhhhhheeccchh------------------hHHHHHHHhhhcC
Confidence 44443 2344455555 9999989887754
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.19 E-value=0.032 Score=47.06 Aligned_cols=149 Identities=10% Similarity=-0.019 Sum_probs=83.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~ 83 (219)
|-....+--+.|+.+.+-++..+..+.--.++...+-+.-......|+.+.|..-.+++. .. ++.......++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 333344445555555555555555544224444444555555555566555555554432 23 55666667777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCCc-------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDH-------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.|++++...+...|.+.|+--|+ .+|..+++=+...++.+.-..-|+...+. ...+...--+++.-+.++|+
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence 77777777777777666643332 45666666666655555555555555332 34445555666666666666
Q ss_pred c
Q 041894 157 M 157 (219)
Q Consensus 157 ~ 157 (219)
.
T Consensus 279 ~ 279 (400)
T COG3071 279 H 279 (400)
T ss_pred h
Confidence 6
No 94
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.16 E-value=0.0052 Score=44.14 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
|..++.++|.++++.|+++....+++..-.. |+. +-...+. --..+...|+..+..+++.+|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI-~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI-DVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC-CCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 3456777777777777777777777654321 111 0000000 1123345677777777777777
Q ss_pred cccChhhHHHHHHHH-HHhCCCccHHHHHHHHHHHHhc
Q 041894 118 LLVDFRFGESVHACI-IRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
..|++..|.++.+.. .+.+++.+..+|..|++=--..
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 777777777776663 4556666677777777544433
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.15 E-value=0.033 Score=51.32 Aligned_cols=148 Identities=6% Similarity=-0.035 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSV 112 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l 112 (219)
..+...+-.|-....+.|..++|+.+++... .|.+.-..-.+...+.+.+++++|+..++..... .|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3456677788888899999999999999875 4535678888999999999999999999998765 57655 44555
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-hhhh-------ccCCcchhhHHHHh
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR-FQGF-------GFNGGREASVHEVL 182 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~-~~~~-------~~~~g~~~~a~~l~ 182 (219)
-.++.+.|..++|..+|+.+...+ .-+...+..+=.++-+.|+.++| .|+. +..+ ....+++..-..++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAAL 239 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 566678999999999999998843 23477888888999999999666 3433 2222 12334555555555
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
++..
T Consensus 240 ~~~~ 243 (694)
T PRK15179 240 RRLG 243 (694)
T ss_pred HHcC
Confidence 5544
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.021 Score=45.86 Aligned_cols=137 Identities=9% Similarity=-0.049 Sum_probs=90.7
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.|++.++++.|.+.... |-. ......=...+.+..+++-|+..++.|.+-.+-.|.+-|-+++.+ .+..+
T Consensus 117 i~~~~~~~deAl~~~~~----~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL----GEN--LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhcCCChHHHHHHHhc----cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 56777788887776554 111 222222223345566777888888888754234455544444444 46799
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+|+-+|++|-+. ..|+..+.+-...++...|++++|+.+++........ +..+...+|.+---.|.-
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 999999999643 6899999999999999999999999999998766533 334444444444444544
No 97
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.09 E-value=0.0058 Score=49.56 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=85.1
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc--------
Q 041894 56 HDSLCLLDTLK--TPAPPVAWKSIIRCCTQN-----GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-------- 120 (219)
Q Consensus 56 ~~A~~~~~~m~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-------- 120 (219)
-..++.|...+ +. |--+|-+.+..|... +..+--+..++.|.+-|++-|..+|+.||+.+=+-.
T Consensus 51 v~~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 34455666665 45 777888888877654 567777778888999999999999999999887652
Q ss_pred --------ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 121 --------DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 121 --------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
.-+-+..++++|...|+.||..+-..||++|++.|..-..++++
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 34567899999999999999999999999999999875444433
No 98
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0069 Score=56.17 Aligned_cols=184 Identities=7% Similarity=0.072 Sum_probs=119.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+..+.|.++|.+.++.. +-|.+.-|-+=-.++.+|++..|..||.+.++.. +..+|-.+-++|...|++..|.++|.
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887765 4477777777778889999999999999887320 45788899999999999999999998
Q ss_pred HhH-hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC---chhHHHHHhhhhccC
Q 041894 96 RMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN---MDMHIYDRFQGFGFN 171 (219)
Q Consensus 96 ~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~---~~~~~~~~~~~~~~~ 171 (219)
.-. +..-.-+..+.+-|-.++-+.|.+.+|....-......+.-....+|..+-..--.-. ..... +.+....
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t---~eev~~a 781 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT---LEEVLEA 781 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc---HHHHHHH
Confidence 844 4444445667777888888889999888887665555544455566655432211000 00001 1111112
Q ss_pred CcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 172 GGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
-++++.|.++|..|..-.+...--..+.-+++.+
T Consensus 782 ~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c 815 (1018)
T KOG2002|consen 782 VKELEEARRLFTELSKNGDKRISKTVIAQEAQLC 815 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 2444889999998874321222233444444444
No 99
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.03 E-value=0.008 Score=43.18 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=67.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh--cCCCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~li~~ 80 (219)
|..++.++|-++++.|+++....+.+..= |+.++.. ...+. +.. -..| +..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~-------~~~~spl~P-t~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD-------YPPSSPLYP-TSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc-------cCCCCCCCC-CHHHHHHHHHH
Confidence 56789999999999999999888775442 2222111 00000 110 1146 77888888888
Q ss_pred HHhcCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhcccC
Q 041894 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~ 121 (219)
|+.+|++..|+++.+...+. +++.+..+|..|++=+...-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 88888888888888886644 677677788888877765544
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.00 E-value=0.062 Score=46.59 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=98.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
....|+++.|+..+..+++.- +-|++.+......+.+.++.++|.+.++.+. .|.....+-.+-+++.+.|++++|.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 346789999999999987653 4577777888889999999999999999876 4512566777889999999999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.+++.-..+ .+-|...|..|-.+|...|+..++.....+...
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999997765 355778999999999999999998888776543
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.00 E-value=0.11 Score=43.52 Aligned_cols=157 Identities=11% Similarity=-0.019 Sum_probs=97.3
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcC-CCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh-
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ- 83 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~- 83 (219)
.+-..+...++.+.+..-+....+.. ..++..- ....-..+...|++++|...+++.- .|.|...++. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~ 89 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHh
Confidence 33344444567777666666654433 2233322 2222335677899999999988754 3425555553 223333
Q ss_pred ---cCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 84 ---NGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 84 ---~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+..+.+.+.+.. .....|+.. ....+-..+...|+++.|...++...+.. +.+...+..+-.+|...|++
T Consensus 90 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~-- 164 (355)
T cd05804 90 GDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF-- 164 (355)
T ss_pred cccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH--
Confidence 3445555544433 122233332 23344457788999999999999988875 34566788888999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+++++...
T Consensus 165 ----------------~eA~~~l~~~l~ 176 (355)
T cd05804 165 ----------------KEGIAFMESWRD 176 (355)
T ss_pred ----------------HHHHHHHHhhhh
Confidence 999999997664
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.96 E-value=0.017 Score=40.00 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=75.3
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSI 77 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~l 77 (219)
++-.....+.+.|+++.|...|..+.+..- ......+..+-..+.+.|+++.|...|+.+. .| + ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHH
Confidence 455666677889999999999999987541 1123466778889999999999999999875 34 3 3467778
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
-.++.+.|++++|...+++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888999999999999999988763
No 103
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.96 E-value=0.015 Score=43.93 Aligned_cols=127 Identities=7% Similarity=-0.044 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
...|..+-..+...|++++|...|++..+..-.|. ...+..+-..+.+.|+++.|...+....+.. +.+...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34455566666666777777777776654322221 2355666666667777777777776665543 12344555555
Q ss_pred HHHHhcCCchhHH--HHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 149 NMYAQSQNMDMHI--YDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 149 ~~y~~~g~~~~~~--~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.+|...|+...+. ++.-.... ++|.+++++....+ +.-|..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~------~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALF------DKAAEYWKQAIRLA-PNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHH------HHHHHHHHHHHhhC-chhHHHHHHHHHhcC
Confidence 6666666532110 11111111 67777777766655 555666666665555
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.091 Score=49.12 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC--C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH--
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA--P---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-- 110 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-- 110 (219)
|+...+.|-+.|...|+++.+..+...+...- + ...|=-+=.+|...|++++|..+|-+-. +..||..+++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCcccccc
Confidence 33444455555555555555554444332110 0 1123333445555555555555553322 2334432222
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC-
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN- 189 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~- 189 (219)
-+-..+.+.|+++.+...|+.+.+.. +.+..+...|=..|+..+.- .-..++|..++.+..++.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~--------------~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK--------------QEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh--------------hHHHHHHHHHHHHHHhccc
Confidence 24445555555555555555544432 23344444444444444311 112366666665544321
Q ss_pred -C-------------eeehhHHHHHHhhhhHhHHHcCCC
Q 041894 190 -G-------------NVELSSGLAGCNKFEKRVVSAGHD 214 (219)
Q Consensus 190 -~-------------~~~~n~ll~~~~~~~~~m~~~g~~ 214 (219)
+ .-+|-+ +.+|.++.+.+..+|-+
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ 449 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC
Confidence 0 246777 89999998888777643
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.057 Score=43.48 Aligned_cols=139 Identities=7% Similarity=-0.055 Sum_probs=101.2
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 105 (219)
+.+.+.......+......-...|++.+++++|.+........ .....=++.+.+..+.+-|.+-++.|++-. +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---E~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---EAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 4445554445555454555556789999999999999874333 333333455666777899999999998642 4
Q ss_pred cccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHH
Q 041894 106 HNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181 (219)
Q Consensus 106 ~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l 181 (219)
..|.+-|-+++.+ .+...+|..+|++|-.. ..|+.-+.|-...+....|++ ++|+.+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~------------------eeAe~l 229 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY------------------EEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH------------------HHHHHH
Confidence 5566656666653 35688999999999553 568888999999999999999 999999
Q ss_pred hhcCCCCC
Q 041894 182 LDKIPERN 189 (219)
Q Consensus 182 ~~~m~~~~ 189 (219)
+++...++
T Consensus 230 L~eaL~kd 237 (299)
T KOG3081|consen 230 LEEALDKD 237 (299)
T ss_pred HHHHHhcc
Confidence 99887664
No 106
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.037 Score=48.02 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=120.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.+++..|..+|+..+... ..+...|-..+.+=.+++++.+|..+|+... -|.=-..|-..+..=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 356778888999888776 5577788889999999999999999998754 2201133555555555678999999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH--------
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR-------- 164 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~-------- 164 (219)
..-.+ .+|+...|.+.|+-=.+-+.++.|+.+++.-+-.+ |+...|--....=-++|.+..+ +|..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 88655 58999999999999999999999999998865543 8888887777777777777544 3332
Q ss_pred ---------hhhhccCCcchhhHHHHhhcCC
Q 041894 165 ---------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 165 ---------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+..|-.++...+.|.-+|.--.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666665433
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.77 E-value=0.061 Score=48.30 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=128.6
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~ 84 (219)
.|-.-+.-..+.++...-.+.|+..++. .+.....+|...|...-+.+-++-+..+++..-+- ++..-+-.|..+.+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-CHHHHHHHHHHHHhc
Confidence 3444445556777888888888877654 34445567888888888888888999999887655 556678888999999
Q ss_pred CChhHHHHHHHHhHhC------CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC--Ccc--HHHHHHHHHHHHhc
Q 041894 85 GLLVESLTCFVRMIGS------GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV--DLD--LYTNNALMNMYAQS 154 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~--~~~~~~ll~~y~~~ 154 (219)
+++++|-+.+...+.. .-+-+...|.-+.+-.++.-+.-....+ +.+.+-|+ -+| ...|++|-+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999998887533 2344556777776666665444333333 22334443 244 57899999999999
Q ss_pred CCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhhhhHhHHHc
Q 041894 155 QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNKFEKRVVSA 211 (219)
Q Consensus 155 g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~~~~~m~~~ 211 (219)
|++ ++|+++|++-... . +.-|+.+-++|++-...+.++
T Consensus 262 g~~------------------ekarDvyeeai~~v~t-vrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 262 GLF------------------EKARDVYEEAIQTVMT-VRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred hhh------------------HHHHHHHHHHHHhhee-hhhHHHHHHHHHHHHHHHHHH
Confidence 999 9999999874432 3 344778888888777544443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.76 E-value=0.048 Score=42.98 Aligned_cols=131 Identities=10% Similarity=0.042 Sum_probs=92.4
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCC-CcH-HHHHHHHHHHhhc--------CCHHHHHHHHHhcC--CCCChhh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NSR-FLISRLLFIYNNF--------NLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
++..+-.++.+.|+++.|...++.+.+..-. |.. ..+..+-.++.+. |+.++|.+.|+.+. .|.+...
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 5566667888999999999999999876421 221 1333333344433 77899999998875 3412222
Q ss_pred HH-----------------HHHHHHHhcCChhHHHHHHHHhHhCC-CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 74 WK-----------------SIIRCCTQNGLLVESLTCFVRMIGSG-VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 74 ~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
+. .+-..+.+.|++++|...|.+..+.. -.| ....+..+..++...|+.++|...++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 23456778899999999999987652 112 345788999999999999999999988876
Q ss_pred hC
Q 041894 135 LG 136 (219)
Q Consensus 135 ~g 136 (219)
+.
T Consensus 232 ~~ 233 (235)
T TIGR03302 232 NY 233 (235)
T ss_pred hC
Confidence 54
No 109
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.75 E-value=0.022 Score=48.34 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=81.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+...|+++.|..+|.+.++.. +.+...|..+-.+|.+.|++++|...++... .|.+...|..+-.+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3456789999999999998875 4467778888889999999999999998765 332667888888999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...|++..+ +.|+.......+.-|
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999998876 457776666666555
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.75 E-value=0.075 Score=51.55 Aligned_cols=175 Identities=10% Similarity=0.054 Sum_probs=134.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC------C--CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK------T--PAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
.=|+++.++. +.+...|=..|......+++++|++++++.- + . -.-.|.++++--...|.-+...++|++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE-KLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE-KLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH-HHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3466666664 5677889999999999999999999997652 1 1 235688888888888888888899988
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH----------
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR---------- 164 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~---------- 164 (219)
..+-. --...|..|...|.+....++|.++++.|.+. +.-...+|....+.+.+..+-+++ +..+
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 76542 12347889999999999999999999999765 335678999999999998886544 2111
Q ss_pred ---hhhh---ccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhh
Q 041894 165 ---FQGF---GFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFE 205 (219)
Q Consensus 165 ---~~~~---~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~ 205 (219)
|.-| -+++||=++++.+|+..... . .-.|+..|+.=.++|
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccC
Confidence 3333 47899999999999987632 3 567999999888866
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.70 E-value=0.051 Score=47.80 Aligned_cols=134 Identities=5% Similarity=0.013 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 20 KSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.+.....++.++..- ..| ..+|..+|+.--|..-++.|+.+|.+.++.+ .+..++++|.-||. ++..-|+++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 344444555554433 333 3457777887778777899999998886311 67788889988885 6888899999
Q ss_pred HH-hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCc
Q 041894 95 VR-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNM 157 (219)
Q Consensus 95 ~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~ 157 (219)
+- |++-|=. ..--...++.++..++-..++.+|+.....++.+| ...|..+|+-=..-|++
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 76 4443322 22334567778888888999999999888876665 56788888877777777
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.65 E-value=0.0065 Score=38.05 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=28.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+.|+++.|..+|+.+.+.. +-+...+-.+..+|.+.|++++|..+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666666665543 2245555556666666666666666666554
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.57 E-value=0.2 Score=46.55 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
|+++.|++++.+.++.. +.+...|.+|=..|-..|+.+++...|-.. .+. |...|..+-.-..+.|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999999998888776 557778888888999999999988776433 344 7788888888888889999999888
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH----HHHHHhcCCc
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL----MNMYAQSQNM 157 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----l~~y~~~g~~ 157 (219)
.+-.+.. +++...+--=..-|-+.|+...|..-+.++.+.-.+.|..-...+ ++.|...++.
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 8877653 445545555566777888888888888888776543333333333 4445556666
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.57 E-value=0.0059 Score=38.27 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 51 NFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+.|++++|.+.|+..- .|.+...+-.+..+|.+.|++++|..+++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555442 222444444555555555555555555555443
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.56 E-value=0.083 Score=47.04 Aligned_cols=154 Identities=10% Similarity=0.049 Sum_probs=110.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCT 82 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~ 82 (219)
++.-+-..|-..|+++.|....+..++.. |+ +..|..--..|-+.|++++|.+.++..+.. +|-..=+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34444556778999999999999888774 54 557777788899999999999999887743 16677788889999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccH--------HHHHHHHhcccChhhHHHHHHHHHHh--CC---CccHHHHHH---
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVF--------PSVLKSCTLLVDFRFGESVHACIIRL--GV---DLDLYTNNA--- 146 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~a~~~~~~m~~~--g~---~~~~~~~~~--- 146 (219)
++|+.++|.+++..+.+.+..|-...+ .-.-.+|.+.|++..|...+..+.+. .+ +-|.++|..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 999999999999988887765554433 34567788889988888777766543 11 234444421
Q ss_pred HHHHHHhcCCchhHH
Q 041894 147 LMNMYAQSQNMDMHI 161 (219)
Q Consensus 147 ll~~y~~~g~~~~~~ 161 (219)
.+++|...=++++.+
T Consensus 354 t~r~Y~~~L~~ed~l 368 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKL 368 (517)
T ss_pred cHHHHHHHHHHHHHh
Confidence 245565555555443
No 116
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.19 Score=43.56 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.+|+.+=+-|....+...|.+-|+.-++ |.| |...|-.|=++|.-.+...-|.-.++...... +.|...|.+|=++
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~C 441 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGEC 441 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3444444444444444444444444332 222 44556666666666666767777777665543 4588999999999
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.++.++|
T Consensus 442 Y~kl~~~~eA 451 (559)
T KOG1155|consen 442 YEKLNRLEEA 451 (559)
T ss_pred HHHhccHHHH
Confidence 9999999555
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.28 Score=42.57 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=99.6
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH-HhcC-CCCChhhHHHHHHHHHhcCChh
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-DTLK-TPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~-~~m~-~~~~~~~~~~li~~~~~~g~~~ 88 (219)
-+.|-...+..+|.+++.+.. +-++.|+.+.+.|-..|-+.|+..+|...+ +..+ -|.|..|.-=|-..|...--++
T Consensus 565 aniye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 334444455666666655542 124557778888888888888888887764 4444 1215544444444555555568
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHh-cccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+|..+|+.- .=+.|+..-|..++.+|. +.|++..|..++..+.+. ++-|.....-|++.....|..+
T Consensus 644 kai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 644 KAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 888888763 237899999999988875 679999999999988654 6778888888898888888764
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.49 E-value=0.06 Score=40.32 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHH-HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHH
Q 041894 20 KSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 20 ~~~a~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~ 92 (219)
+..+...+..+. ..+-.-....|..+...+...|++++|...|+... .+ + ..+|..+-..+...|++++|..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555553 33433345667777778888899999999988763 22 2 2478888888889999999999
Q ss_pred HHHHhHhCCCCCC-cccHHHHHHHHh-------cccChhhHHHHHHH
Q 041894 93 CFVRMIGSGVYPD-HNVFPSVLKSCT-------LLVDFRFGESVHAC 131 (219)
Q Consensus 93 ~~~~m~~~g~~p~-~~t~~~ll~~~~-------~~g~~~~a~~~~~~ 131 (219)
.++...+. .|+ ..++..+...+. ..|+++.|...+..
T Consensus 94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99887653 333 334555555666 67787766555544
No 119
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.48 E-value=0.17 Score=45.19 Aligned_cols=155 Identities=15% Similarity=0.066 Sum_probs=106.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc----C----------CCCcHHHH--HHHHHHHhhcCCHHHHHHHHHhcC--
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT----L----------EPNSRFLI--SRLLFIYNNFNLVHDSLCLLDTLK-- 66 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~----g----------~~~~~~~~--~~ll~~~~~~g~~~~A~~~~~~m~-- 66 (219)
.+|+.|-.-|.......-...++...... + -.|+...| .-+-..|-+.|+.++|...++...
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45666666665555555555666655433 1 13555444 555567889999999999999765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH---
Q 041894 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--- 143 (219)
Q Consensus 67 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--- 143 (219)
.|-.+..|..--.-+-+.|++.+|.+.+++-++-. .-|.+.=+-....+.++|+.+.|..++..--+.+..|-...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 34124567888888999999999999999887654 34677777888999999999999999988766664332211
Q ss_pred ---H--HHHHHHHHhcCCchhH
Q 041894 144 ---N--NALMNMYAQSQNMDMH 160 (219)
Q Consensus 144 ---~--~~ll~~y~~~g~~~~~ 160 (219)
| ...-.+|.|.|++..|
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 1 2223677788888555
No 120
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.05 Score=45.45 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
+.+..|.-+...|+.+.|.++-.+++-| |..-|-.-|.+++..+++++-.++-. +.- ++.-|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~----skK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAK----SKK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHh----CCC--CCCChHHHHHHHHHCC
Confidence 4555566777789999999999999999 99999999999999999998765433 222 3478889999999999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
...+|..+...+ .+.--+..|.+.|++..|+ +.+.+.+|++.=..+.+.+...
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~-----~~A~~~kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAA-----QEAFKEKDIDLLKQILKRCPGN 304 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHH-----HHHHHcCCHHHHHHHHHHCCCC
Confidence 999888886662 2255688899999987663 3334556666666666666543
No 121
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.46 E-value=0.011 Score=43.30 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=40.0
Q ss_pred cccCChhHHHHHHHHHHHc--C-CCCcHH------------------HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKT--L-EPNSRF------------------LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP 71 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~--g-~~~~~~------------------~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~ 71 (219)
...++.+.+...+.++... | +-|+.. +...++..+...|+++.|..+...+. .|-|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence 4456777777777776653 2 322211 12333333444555555555555443 22144
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
..|-.+|.+|...|+..+|.++|+.+
T Consensus 97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 97 EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555555555555555555555554
No 122
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.45 E-value=0.0031 Score=41.64 Aligned_cols=72 Identities=6% Similarity=0.068 Sum_probs=38.5
Q ss_pred cCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 84 NGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|+++.|..+|+.+.+..- .|+...+-.+-.+|.+.|+++.|..+++. .+.+.. +....-.+-.+|.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCH
Confidence 4667777777777665421 12333344456677777777777777766 222211 222222335667777777
No 123
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.42 E-value=0.34 Score=38.31 Aligned_cols=150 Identities=8% Similarity=0.013 Sum_probs=122.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC---ChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPA---PPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~---~~~~~~~li~ 79 (219)
..+|..+-..|.+.|..+.|.+-|.+..+.. +-+..+.|..=..+|..|.+++|...|+..- .|. -..+|..+--
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 4678888889999999999999999988664 3355667777778899999999999998753 330 2467888888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|..+.|+.+.|...|..-++. -|+ ..+.-.+-+-..+.|+.-.|+..++.....+. ++..+.--.|+.--+.|+-
T Consensus 148 Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 999999999999999987654 233 34677778888899999999999998877765 8888888888888889988
No 124
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.11 Score=45.31 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=64.4
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a 90 (219)
.|.+..+.+...+.|+...+.. +-++.+|..-=-.+.-.+++++|..=|+.-.+. -+...|--+--+.-+.++++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666655544 113333333333344445566666666655432 0233343333344445566777
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
...|++-.+. ++-....|+..-..+.+.++++.|...++.-++.
T Consensus 448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7777665443 3334456666666677777777777666664443
No 125
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.089 Score=45.78 Aligned_cols=153 Identities=11% Similarity=0.153 Sum_probs=119.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN----NFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~----~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
...+.+.+.++|...++ =++-..+|+..+=.+|+ +..++..|.+++.... -| ...+|...|.-=.+.++++.
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP-K~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP-KDKLFKGYIELELQLREFDR 455 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-chhHHHHHHHHHHHHhhHHH
Confidence 35688899999999887 34556789988888886 4688999999998765 45 67889999999999999999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
+..+|+..++-+ +-|..+|.-.-.-=...|+.+.|+.+|...++.. +..-...|.+-|+.=...|.+
T Consensus 456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~----------- 523 (677)
T KOG1915|consen 456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF----------- 523 (677)
T ss_pred HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-----------
Confidence 999999998754 3355677665555567799999999999865543 334456777777777788888
Q ss_pred ccCCcchhhHHHHhhcCCCCC
Q 041894 169 GFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~~ 189 (219)
++|+.++++..+++
T Consensus 524 -------ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 524 -------EKARALYERLLDRT 537 (677)
T ss_pred -------HHHHHHHHHHHHhc
Confidence 99999998877654
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.26 E-value=0.15 Score=38.32 Aligned_cols=112 Identities=11% Similarity=0.003 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPS 111 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 111 (219)
...+..+-..|.+.|++++|...|++.. .| + ...|..+-..+.+.|++++|...+.+..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE-DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3456666667777888888888887653 12 2 246777778888888888888888776653 343 334445
Q ss_pred HHHHHhcccC--------------hhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 112 VLKSCTLLVD--------------FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 112 ll~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+-..+...|+ ++.|.+++....+.+ |+. |..++.-+...|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCcc
Confidence 5555555555 577888888776644 443 66666666666654
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.17 E-value=0.11 Score=45.78 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=118.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHh-cCCCCCh-hhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDT-LKTPAPP-VAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~-m~~~~~~-~~~~~li~~~ 81 (219)
.+|...++.--+...++.|..+|.++.+.+..+ ++++++++|.-||. ++.+-|.++|.. |+.-+|. .--+..++-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 346666777777888999999999999999888 78889999988885 568899999974 5522244 4456788888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHHhcccChhhHHHHHHHHHHh-C--CCccHHHHHHHHHHHHhcCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSCTLLVDFRFGESVHACIIRL-G--VDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--~~~~~~~~~~ll~~y~~~g~ 156 (219)
...++-..+..+|+....+++.|+. .+|..+|+.=+..|++..+.++-+.+... . ..+....-..+++.|.-.++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 8889999999999999988888775 58999999999999999999987775433 1 23344455666777776665
Q ss_pred c
Q 041894 157 M 157 (219)
Q Consensus 157 ~ 157 (219)
.
T Consensus 526 ~ 526 (656)
T KOG1914|consen 526 Y 526 (656)
T ss_pred c
Confidence 5
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.08 E-value=0.15 Score=38.19 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
...|..+...+...|++++|...|+......-.|. ..++..+-..+...|+.++|...+....+.. +....++..+-
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 46678888888899999999999999765432221 2467778888899999999999998877653 33455666777
Q ss_pred HHHH
Q 041894 149 NMYA 152 (219)
Q Consensus 149 ~~y~ 152 (219)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 7777
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.06 E-value=0.03 Score=50.73 Aligned_cols=133 Identities=10% Similarity=0.051 Sum_probs=70.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-cC-CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT-LK-TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-m~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
+.|-.+.|..+|+++ +.|.-.|.+|+..|+.++|..+..+ ++ .| |...|..+-+......-+++|+++
T Consensus 410 slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 410 SLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cchhHHHhhhhccChHHHHHHHHH
Confidence 336666666666653 3455566666666666666666543 33 23 555555554444444444444444
Q ss_pred HHHh-HhC--C-----------------------CCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHH
Q 041894 94 FVRM-IGS--G-----------------------VYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNN 145 (219)
Q Consensus 94 ~~~m-~~~--g-----------------------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~ 145 (219)
++.- .+. - ++|- ..+|=.+=.+..+.++.+.|...|..-+.. .| +...||
T Consensus 480 sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWn 557 (777)
T KOG1128|consen 480 SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWN 557 (777)
T ss_pred hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhh
Confidence 4442 110 0 1111 123322222333556666666666554443 34 577888
Q ss_pred HHHHHHHhcCCchhH
Q 041894 146 ALMNMYAQSQNMDMH 160 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~ 160 (219)
.|-.+|.+.|+-.++
T Consensus 558 Nls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRA 572 (777)
T ss_pred hhhHHHHHHhhhHHH
Confidence 888888888888333
No 130
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=0.15 Score=42.66 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.+.+..|.-+...|+...|.++-.++ -.|+..-|..-|.+++..++|++-+.+-.. .-...-|...++++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 35566677778888888887766555 258888899999999999999866664321 22347788888888
Q ss_pred HhcCCchhHH-------HHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 152 AQSQNMDMHI-------YDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 152 ~~~g~~~~~~-------~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
.+.|..+.|. ++.-..++.++|++.+|.+.--+.++
T Consensus 248 ~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPDEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 8888887662 22233344578888888776555443
No 131
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.02 E-value=0.47 Score=43.07 Aligned_cols=175 Identities=10% Similarity=0.029 Sum_probs=129.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.||+..-..|.+.+.++-+..+|...++-- +.+...|......=-.-|..++...+|+... -|...+.|-.....+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 577788888999999999999999887654 5567788888777777888888888888764 2325678888888899
Q ss_pred hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
.+|+...|..++....+. .| +...|-+.++--..+..++.|+.+|..-.. ..|+..+|.--+..---.+..++++
T Consensus 596 ~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred hcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 999999999999886654 34 557888888888999999999999987655 4577777766666666666775551
Q ss_pred ----------------HHHhhhhccCCcchhhHHHHhhc
Q 041894 162 ----------------YDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 162 ----------------~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
|=++.....+-++++.|++-|..
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 11122333455666677766654
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.99 E-value=0.31 Score=43.50 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred ChhHHHHHHhCccccC-----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc--------CCHHHHHHHHHhcC---
Q 041894 3 STKTLINLLKNPVSIK-----TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF--------NLVHDSLCLLDTLK--- 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~-----~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~--------g~~~~A~~~~~~m~--- 66 (219)
|..+|...+++..... +...|..+|++.++.. +-....|..+-.+|... .++..+.+......
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 4456666666543322 2556677777766553 11233333332222111 11223333333211
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.. +...|-++--.....|++++|...|++..... |+...|..+-+.|...|+.++|...++.-.+..
T Consensus 415 ~~~~-~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 415 ELNV-LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cCcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12 33555555444445577777777777766543 566667777777777777777777776655543
No 133
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.12 Score=45.68 Aligned_cols=137 Identities=9% Similarity=0.071 Sum_probs=93.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----hhhHHHHHHHHHhc
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP-----PVAWKSIIRCCTQN 84 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~-----~~~~~~li~~~~~~ 84 (219)
|.+.++++.|.++|.+....- +.|+...+=+=-.....+.+.+|..+|+.-. .-.+ ..+++.|=++|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 456778888888888766332 3355555555445556777888888886542 1001 23577777888888
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
+..++|...|+.-+.. .+-|..+++++--.|...|+++.|...|.. ...+.||-.+...++..+...
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHHh
Confidence 8889998888886543 244677888888888888899888888764 345678887777777766554
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.88 E-value=0.31 Score=44.40 Aligned_cols=162 Identities=9% Similarity=0.053 Sum_probs=112.2
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
|--..-..+-..+.+.|-.++|..+|+ -...|.-+|-+|...|+..+|..+..+-.+ -.||..-|..+.+..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~E------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFE------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHH------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333344566678899999999999999 347788899999999999999999888776 478999999999988
Q ss_pred hcccChhhHHHHHHHHHHh---CCC---ccHHHHHHHHHHHHhcCCc---hhHHHHHhhhhccCCcchhhHHHHhhcCC-
Q 041894 117 TLLVDFRFGESVHACIIRL---GVD---LDLYTNNALMNMYAQSQNM---DMHIYDRFQGFGFNGGREASVHEVLDKIP- 186 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~---g~~---~~~~~~~~ll~~y~~~g~~---~~~~~~~~~~~~~~~g~~~~a~~l~~~m~- 186 (219)
.+-.-++.|-++.+..... .+- .+...|....+.+-++=.. ...+|-...-.+.++++++.|.+-|....
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 8888888888887764222 110 1112233332222211111 11122223333448889999999998765
Q ss_pred -CCCCeeehhHHHHHHhhhhH
Q 041894 187 -ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 187 -~~~~~~~~n~ll~~~~~~~~ 206 (219)
+||+...||.+=.+|.+.++
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhh
Confidence 56657889999999999885
No 135
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.86 E-value=0.047 Score=45.33 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=91.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH-HHHHHHhcc
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTL-K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-SVLKSCTLL 119 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 119 (219)
+.|=.+|.+.|.+.+|++.|++- + .| -+.||-.|-..|.+..++..|+.+|.+-++. -|-.+||- -.-..+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 77888999999999999999764 3 44 6689999999999999999999999887654 46666653 345556667
Q ss_pred cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+..++|.+++....+.. ..++....++-..|--.|+++.+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 88999999999887765 46777888888888899999544
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.81 E-value=0.092 Score=44.56 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=64.1
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 123 (219)
......|++++|+..|++.. .|.+...|..+-.+|.+.|++++|...++..++. .| +...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 34566788888888887764 3325677777778888888888888888887653 34 3446666777778888888
Q ss_pred hHHHHHHHHHHhC
Q 041894 124 FGESVHACIIRLG 136 (219)
Q Consensus 124 ~a~~~~~~m~~~g 136 (219)
.|...++...+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888777654
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.74 E-value=0.4 Score=45.42 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=73.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh--------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP-------- 71 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~-------- 71 (219)
+...+-.|+..+-..++++.|.++.+...+.. -.+....+..+ .+.+.++.+++..+ .-.. .. +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-~~l~~~~~-~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-NLIDSFSQ-NLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-hhhhhccc-ccchhHHHHH
Confidence 34567778888878888888888877554432 11222222332 56666666665555 2211 11 11
Q ss_pred -----------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 72 -----------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 72 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.++-.+-.+|-+.|+.++|..+|++.++-. .=|....|-+-..|+.. +++.|+++....+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344445566666677777777777766554 22445566666666666 777777666655443
No 138
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.71 E-value=0.056 Score=39.38 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-----HhCCCccHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-----RLGVDLDLYTNN 145 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~ 145 (219)
.+...++..+...|++++|.++........ +.|...|..+|.++...|+...|.++++.+. ..|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345567777888999999999999987653 4578899999999999999999999988854 469988865543
No 139
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.67 E-value=0.49 Score=44.07 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=112.9
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC-C--ChhhHHHHHHHHHhcCC
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPN--SRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-A--PPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--~~~~~~~li~~~~~~g~ 86 (219)
-++.+....+..+.+.....+..+.| +...|.-+-.+|...|++++|..+|..+... + +...|--+-.+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 35666777777787888777777444 5567899999999999999999999998621 1 56789999999999999
Q ss_pred hhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHH--------HHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 87 LVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACI--------IRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m--------~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.++|.+.|...+.. .|+ ...=.+|-.-+-+.|+.++|.++++.+ ...+..|+...-.-....|.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999987764 454 344455666677899999999999884 3445666777777777788888887
Q ss_pred hh
Q 041894 158 DM 159 (219)
Q Consensus 158 ~~ 159 (219)
+.
T Consensus 543 E~ 544 (895)
T KOG2076|consen 543 EE 544 (895)
T ss_pred HH
Confidence 43
No 140
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.4 Score=45.58 Aligned_cols=145 Identities=11% Similarity=0.115 Sum_probs=102.3
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---------------- 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---------------- 66 (219)
|+..|..++..+.+.|.+++-.+.+...++..-+|... +.||-+|++.+++.+-++++..=.
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh
Confidence 57889999999999999999998887777776666554 789999999999888777654211
Q ss_pred -------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc
Q 041894 67 -------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139 (219)
Q Consensus 67 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 139 (219)
-. ++.-|..|-..+...|+++.|..-- ++. -+..||.-+-.+|...+.++.|. |-...+..
T Consensus 1210 y~aAkl~y~-~vSN~a~La~TLV~LgeyQ~AVD~a---RKA---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iiv 1277 (1666)
T KOG0985|consen 1210 YEAAKLLYS-NVSNFAKLASTLVYLGEYQGAVDAA---RKA---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIV 1277 (1666)
T ss_pred hHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHh---hhc---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEE
Confidence 01 4455666777777777777776433 222 35678888888888777776443 33334445
Q ss_pred cHHHHHHHHHHHHhcCCchhHH
Q 041894 140 DLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 140 ~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...-..-|++.|-..|-+++.|
T Consensus 1278 hadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHH
Confidence 5566777888888888886554
No 141
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.51 E-value=0.61 Score=33.63 Aligned_cols=127 Identities=8% Similarity=0.063 Sum_probs=90.0
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
...++..+.+.+.......+++.+.+.+ ..+...++.++..|++.. .+.....+.. .. +......+++-|.+.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KS-NHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-ccCCHHHHHHHHHHcCc
Confidence 4567777877889999999999998887 467888999999999864 4455555552 34 55666778888988888
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc-cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL-VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
++++..++..+. -|.-.++.+... ++.+.|.+....- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~---------~~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDG---------NFKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhc---------CHHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 888888887752 133344444444 7788777776641 255577777776654
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.42 E-value=0.058 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=19.9
Q ss_pred HhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 49 YNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
+.+.|++++|...|++.. .|.+...|..+-.++...|++++|..+|++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444432 1212333444444444444444444444443
No 143
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.25 Score=43.73 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=93.0
Q ss_pred HhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCCcccHHHHHHHHhccc
Q 041894 49 YNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g 120 (219)
|.+.++.+.|.++|.+.- .|.|+...+=+=--....+.+.+|..+|+.-+.. ......-+++.|=.+|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 355667777777776643 2325555555444444457788888888875521 11123446777778888999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHH
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGL 198 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll 198 (219)
..++|...++.-.... +-|..++.++=-.|...|.+ +.|.+.|.+-. .|+ ..+-..+|
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnl------------------d~Aid~fhKaL~l~p~-n~~~~~lL 529 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNL------------------DKAIDHFHKALALKPD-NIFISELL 529 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCh------------------HHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 9999999998876654 45777888888888999999 99999998755 556 45566666
Q ss_pred HHHhhh
Q 041894 199 AGCNKF 204 (219)
Q Consensus 199 ~~~~~~ 204 (219)
.-+...
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 655444
No 144
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.44 Score=45.32 Aligned_cols=150 Identities=10% Similarity=0.149 Sum_probs=104.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
..+-+++|..+|..- ..+....+.||. ..+.++.|.++-+...+| ..|+.+-.+-.+.|...+|.+-|-
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p---~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP---AVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh---HHHHHHHHHHHhcCchHHHHHHHH
Confidence 334455565555543 233444444443 456778887777777777 789999999999999999987763
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-HH---------HHh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH-IY---------DRF 165 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~-~~---------~~~ 165 (219)
. . -|...|.-+++.+.+.|.+++-...+.+..+..-+|. +-+.||-+|++.+++.+. -| +.+
T Consensus 1129 k---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1129 K---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQV 1200 (1666)
T ss_pred h---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHH
Confidence 3 1 3677899999999999999999998887766654554 567899999999998433 11 112
Q ss_pred hhhccCCcchhhHHHHhhc
Q 041894 166 QGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 166 ~~~~~~~g~~~~a~~l~~~ 184 (219)
..-++.+|+.+.|.=+|..
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH
Confidence 2334567777777666654
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.28 E-value=0.22 Score=35.39 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=22.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
..|+.++|..+|++-...|.... ...+--+-+.+...|+.++|..+++...
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555444443322 1233333444444455555555554443
No 146
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.27 E-value=0.51 Score=39.06 Aligned_cols=149 Identities=11% Similarity=0.140 Sum_probs=96.5
Q ss_pred hHHHHHHhCccc--cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cC----CHHHHHHHHHhcC-------CCC
Q 041894 5 KTLINLLKNPVS--IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN--FN----LVHDSLCLLDTLK-------TPA 69 (219)
Q Consensus 5 ~~~~~ll~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~-------~~~ 69 (219)
.++.++|..-.. -..++....+++.|++.|+..+.++|-+....... .. ....|..+++.|+ .+
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~- 139 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP- 139 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc-
Confidence 344455544333 11356677899999999999998888664444433 22 3577899999997 23
Q ss_pred ChhhHHHHHHHHHhcCC----hhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcc-cC--hhhHHHHHHHHHHhCCCccH
Q 041894 70 PPVAWKSIIRCCTQNGL----LVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLL-VD--FRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~-g~--~~~a~~~~~~m~~~g~~~~~ 141 (219)
+-+++.+++.. ...+ .+.+..+|+.+.+.|+..+.. -+.+-+-+++.. .. ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55667777655 2223 367788898888888887654 333333333322 22 44677889999999999887
Q ss_pred HHHHHHHHHHHhcCCc
Q 041894 142 YTNNALMNMYAQSQNM 157 (219)
Q Consensus 142 ~~~~~ll~~y~~~g~~ 157 (219)
..|.. +..++-.++.
T Consensus 218 ~~yp~-lGlLall~~~ 232 (297)
T PF13170_consen 218 MHYPT-LGLLALLEDP 232 (297)
T ss_pred ccccH-HHHHHhcCCc
Confidence 77665 5555555555
No 147
>PLN02789 farnesyltranstransferase
Probab=95.26 E-value=1.5 Score=36.68 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=98.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
++..+-..+...+..++|..+.+++++.. +-+..+|+..=..+.+.| ++++++..++.+. .|.+..+|+---..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34444455566788999999999998764 223345554444455556 6799999998765 2326667776555555
Q ss_pred hcCCh--hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 83 QNGLL--VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 83 ~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
+.|.. ++++.+++.+.+.. +=|...|+---..+...|+++++.+.++.+.+..+ .|...|+-.--.+.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRS 189 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhc
Confidence 56653 67788888887542 22566788878888888999999999999988874 4455666655444444
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.18 E-value=0.19 Score=46.12 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
|.-+-+.|...|+++.|.++|.+- .-|+-.|..|.+.|.+++|.++-. .-.|.+....+|-+--.-+-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~--e~~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE--ECHGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH--HhcCchhHHHHHHHhHHhHHh
Confidence 444445555555555555555331 123344555555555555544422 122333334444444444444
Q ss_pred cCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 154 SQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
.|++ .+|++++-.+.+|+
T Consensus 837 hgkf------------------~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 837 HGKF------------------AEAEQLYITIGEPD 854 (1636)
T ss_pred hcch------------------hhhhheeEEccCch
Confidence 4444 88888888877776
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.96 Score=40.47 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=106.0
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHH--HHHHH--hc
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI--IRCCT--QN 84 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~l--i~~~~--~~ 84 (219)
+=|+-+.+.+++++|.+.-++++..+ +-+...+..=+-+..+.+.+++|+.+.+.-... .+++.. =.+|| +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHc
Confidence 34566778889999999999998877 545666777777888999999999776644321 334444 34444 46
Q ss_pred CChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCC-chhH-
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQN-MDMH- 160 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~-~~~~- 160 (219)
+.+++|+..++ |..++.. +...=-..|-+.|++++|..+++.+.+++... +...=..++.+-..+.- +...
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 78888888776 4555443 55555567788899999999999998877532 22222222222221111 1111
Q ss_pred ------HHHHhhhhcc---CCcchhhHHHHhhcC
Q 041894 161 ------IYDRFQGFGF---NGGREASVHEVLDKI 185 (219)
Q Consensus 161 ------~~~~~~~~~~---~~g~~~~a~~l~~~m 185 (219)
.|+-+=..+| .+|++.+|++++++-
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1222222223 578889999999876
No 150
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.13 E-value=1.3 Score=40.46 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=21.7
Q ss_pred CcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 172 GGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
-|.+-+|+.+|++-+ .|.+...|=..|..=.+.|
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 334488888888655 3332566777777666666
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.09 E-value=0.39 Score=39.00 Aligned_cols=95 Identities=11% Similarity=-0.000 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----ccc
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNV 108 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t 108 (219)
...|...+..+.+.|++++|...|+.+. .| +. .++--+-..|...|++++|...|..+.+.- |+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 3457777777777899999999998876 45 43 355566688888999999999999987542 32 223
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+--+...+...|+.+.|..+++.+.+.-
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3334556678899999999999887765
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.06 E-value=0.48 Score=33.64 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hh-hHHHHHHHHHhcC
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PV-AWKSIIRCCTQNG 85 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~-~~~~li~~~~~~g 85 (219)
+-..|+.++|..+|.+....|+.... ..+-.+=+.|-..|++++|..+|++.. .| + .. ..-.+--++...|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCC
Confidence 44557788888888888877765432 234445556677778888887776653 23 3 11 1111223556667
Q ss_pred ChhHHHHHHHHhH
Q 041894 86 LLVESLTCFVRMI 98 (219)
Q Consensus 86 ~~~~a~~~~~~m~ 98 (219)
++++|.+.+-.-.
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777765543
No 153
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.68 Score=38.27 Aligned_cols=141 Identities=9% Similarity=-0.052 Sum_probs=95.2
Q ss_pred ccccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----------------Ch-----
Q 041894 14 PVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA----------------PP----- 71 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----------------~~----- 71 (219)
..+.|+++.|.+-|+...+. |++| ...||..+- ..+.|+.+.|++...++.++| |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 46889999999999988875 4765 556776664 456788999998887663110 21
Q ss_pred ---hhHHHHHHHH-------HhcCChhHHHHHHHHhH-hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc
Q 041894 72 ---VAWKSIIRCC-------TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140 (219)
Q Consensus 72 ---~~~~~li~~~-------~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 140 (219)
..-+.++.++ .+.|+.+.|.+-+.+|. +..-..|.+|...+--.- -.+++..+.+-++.+..... --
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1234455544 45689999999999986 444567888877642222 22445566666666665543 34
Q ss_pred HHHHHHHHHHHHhcCCch
Q 041894 141 LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~ 158 (219)
..|+..++-.||+..-++
T Consensus 310 ~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFD 327 (459)
T ss_pred hHHHHHHHHHHhhhHHHh
Confidence 668999999999998884
No 154
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.98 E-value=0.42 Score=35.11 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=47.5
Q ss_pred HHcCCCCcHH--HHHHHHHHHhhcCCHHHHHHHHHhcC---------CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhH
Q 041894 31 FKTLEPNSRF--LISRLLFIYNNFNLVHDSLCLLDTLK---------TPAPPVAWKSIIRCCTQNGL-LVESLTCFVRMI 98 (219)
Q Consensus 31 ~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 98 (219)
.+.+..++.. ..|.+|......+++.....+++.+. .. +...|++++.+..+..- ---++.+|.-|.
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3334444432 34666666666666666666665553 12 34556666666654443 234455555555
Q ss_pred hCCCCCCcccHHHHHHHHhcc
Q 041894 99 GSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 99 ~~g~~p~~~t~~~ll~~~~~~ 119 (219)
+.+.+++..-|..+|++|.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555566666666666665553
No 155
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.28 Score=41.37 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC--ChhhHHHHH-HHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccCh
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPA--PPVAWKSII-RCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDF 122 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~ 122 (219)
.+++..|...+|+++|-.+..|. |..+|.+++ ++|.+.+.++.|+++|-.+-- +.+.. ....+-+-|-+.+.+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777666431 456666655 677777888887766544421 11222 233445667777777
Q ss_pred hhHHHHHHHHHHhCCCc
Q 041894 123 RFGESVHACIIRLGVDL 139 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~ 139 (219)
=.|-..|+++......|
T Consensus 478 yyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 478 YYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhhhHHHccCCCc
Confidence 77777787777765444
No 156
>PLN02789 farnesyltranstransferase
Probab=94.95 E-value=1.9 Score=36.11 Aligned_cols=173 Identities=9% Similarity=0.019 Sum_probs=107.1
Q ss_pred CccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC--HHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC
Q 041894 13 NPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 13 ~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~ 86 (219)
.+.+.+ +++.+...++.+.+.. +-+..+|+..--.+.+.|. .+++..+++.+- .. |..+|+-.-..+.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhh
Confidence 334445 5789999999998776 3355567655444555554 256777776654 44 78899998899999999
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc---cCh----hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL---VDF----RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
++++++.++++.+.... |...|+-......+. |.. +.........++.. +-|...|+-+-..|...++.
T Consensus 158 ~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~-- 233 (320)
T PLN02789 158 WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEA-- 233 (320)
T ss_pred HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcc--
Confidence 99999999999876532 344555544444433 222 33445554555543 35678888888888773321
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNK 203 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~ 203 (219)
.+.-.+|.+++.+....+ .+.....+++.|+.
T Consensus 234 ------------l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 234 ------------LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ------------cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 011155666666543322 03345556666654
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.88 E-value=1.1 Score=33.31 Aligned_cols=93 Identities=10% Similarity=0.100 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (219)
.-.+=..+...|++++|.++|+.+. .|-+..-|-.|=-++-..|++++|...|.....-. +=|...+-.+=.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3344455678999999999999876 33155667777778888899999999998876544 22455666677888899
Q ss_pred cChhhHHHHHHHHHHh
Q 041894 120 VDFRFGESVHACIIRL 135 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~ 135 (219)
|+.+.|++.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876544
No 158
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.80 E-value=0.25 Score=42.75 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=95.9
Q ss_pred cccCChhHHHHHHHHHHHcCC----CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKTLE----PNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT--QNGLL 87 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~----~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~ 87 (219)
-+.+++.+++++|.++.+..- .-. ...-+.+|++|...+ ++.-...+..+++......|-.+..+.. +.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 467899999999999876541 112 234578899998766 4444444444442102345666655543 34778
Q ss_pred hHHHHHHHHhHhC--CCCCC------------cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC----ccHHHHHHHHH
Q 041894 88 VESLTCFVRMIGS--GVYPD------------HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD----LDLYTNNALMN 149 (219)
Q Consensus 88 ~~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~ 149 (219)
++|.+.+..-... +-.|. ..-=+....+....|.+.+|+.+++.|...=++ ++..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888776544 32222 122244667788999999999999988765444 89999999998
Q ss_pred HHHhcCCchh
Q 041894 150 MYAQSQNMDM 159 (219)
Q Consensus 150 ~y~~~g~~~~ 159 (219)
+++|+=-++.
T Consensus 176 mlsrSYfLEl 185 (549)
T PF07079_consen 176 MLSRSYFLEL 185 (549)
T ss_pred HHhHHHHHHH
Confidence 8988766644
No 159
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.77 E-value=1.4 Score=37.20 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=105.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHH---HHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHH---HHHHhcCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRL---LFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSII---RCCTQNGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li---~~~~~~g~~~ 88 (219)
.|++..|+.-|...++. |+..|-++ -..|...|+.+.|+.=|...- .| |. +.+-| .-+.+.|.++
T Consensus 51 ~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF--~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP-DF--MAARIQRGVVLLKQGELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cH--HHHHHHhchhhhhcccHH
Confidence 45555665555555433 33333333 335555565555554443322 23 32 22222 2356789999
Q ss_pred HHHHHHHHhHhCCCCCCcc----------------cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPDHN----------------VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
+|..=|+..++.. |+.. .....+..+.-.|+...+......+.+-. .+|...|-.=-++|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 9999998887652 3221 12234556667789988888888887754 467777777789999
Q ss_pred hcCCchhHHHHH----------------hhhhccCCcchhhHHHHhhcCCCCC
Q 041894 153 QSQNMDMHIYDR----------------FQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 153 ~~g~~~~~~~~~----------------~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..|+++.||.++ |...++.-||.+.++..++++.+-|
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 999999997655 6677889999999999998877543
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.77 E-value=0.43 Score=35.50 Aligned_cols=84 Identities=11% Similarity=-0.029 Sum_probs=68.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.+.|+++.|+.+|..+..... -+..-|-.|=.++-..|++++|...+...- .|.|..++=.+=.++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4677999999999999987763 355556677778888999999999998653 3327788888889999999999999
Q ss_pred HHHHHhH
Q 041894 92 TCFVRMI 98 (219)
Q Consensus 92 ~~~~~m~ 98 (219)
+-|+.-.
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 9998754
No 161
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.74 E-value=0.29 Score=45.04 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=109.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
+-.....++.|.-+++.+..... -..-|.-+-..|+..|+++.|+++|-+ .-.++-.|..|.++|++.+|++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e------~~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE------ADLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh------cchhHHHHHHHhccccHHHHHH
Confidence 34455567777777776654432 233477888899999999999999973 3457888999999999999998
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH-----------
Q 041894 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI----------- 161 (219)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~----------- 161 (219)
+-.+. .|-+.....|-+=-.-.-..|.+.+|++++-.+ | .|+. -|.+|-+.|..++++
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 87654 233344555666556666778888888886554 2 4553 377888888886553
Q ss_pred HHH---hhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 162 YDR---FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 162 ~~~---~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.++ +.--+...|++..|++-|-+- .-|.+.++-|-.++
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea------~d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA------GDFKAAVNMYKASE 922 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh------hhHHHHHHHhhhhh
Confidence 111 222234567777777665442 23445555554444
No 162
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.74 E-value=2.1 Score=40.70 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=113.9
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCC
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~ 86 (219)
.++.......++...+.+.+.|...+ -+...+-.+-.+|-+.|+.++|..+|+++- .|.|..+.|.+-..|... +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 56666666667767777777776643 345678888999999999999999999875 233789999999999999 9
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~ 164 (219)
+++|.+++..-... +.....+..+..+|..+..+.. .|...+--+++....+-.+... .+.-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 99999998886544 5555677777777777766542 2222222222222222112111 2333
Q ss_pred hhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCN 202 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~ 202 (219)
+-+++-.+.+++++.++|+.+.+.+ +.....-++..|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344445566699999998877542 1444444555554
No 163
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.66 E-value=0.5 Score=41.08 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHH-hHhCCCCCCccc-HHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPPVAWKSIIRCCTQNGLLVESLTCFVR-MIGSGVYPDHNV-FPS 111 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t-~~~ 111 (219)
..+|..+|+..-+..-++.|+.+|.+.+ .+ ++..++++|.-++. |++.-|.++|+- |+.- ||.-. -.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h-~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH-HVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc-ceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 4567788888888888999999998876 45 78889999988875 788889988866 4332 44433 345
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCch
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~ 158 (219)
.+..+.+.++-+.|+.+|+.-+.+ +.-+ ...|..+|+-=.+-|++-
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 677778889999999998854332 2222 567888887777777773
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.59 E-value=0.17 Score=31.16 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
-..+...|++++|.+.|++.++.. | +...+..+-.++...|++++|...++...+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356788999999999999998875 5 45677788888899999999999999987654
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.49 E-value=1.7 Score=38.84 Aligned_cols=134 Identities=9% Similarity=-0.021 Sum_probs=88.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcC-----CHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC--------ChhHHHHHHHHh
Q 041894 33 TLEPNSRFLISRLLFIYNNFN-----LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG--------LLVESLTCFVRM 97 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g-----~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m 97 (219)
.+.+.+...|...+.+..... +.+.|..+|++.. .|.....|..+-.++.... +...+.+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345678889999999865432 3778999998875 4523455555444333221 122333333322
Q ss_pred HhC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchh
Q 041894 98 IGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA 176 (219)
Q Consensus 98 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~ 176 (219)
... ....+...|.++--.....|++++|...++...... |+...|..+-..+...|+. +
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~------------------~ 470 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDN------------------R 470 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCH------------------H
Confidence 221 122334566665444455799999999999988876 6788999999999999999 9
Q ss_pred hHHHHhhcCC
Q 041894 177 SVHEVLDKIP 186 (219)
Q Consensus 177 ~a~~l~~~m~ 186 (219)
+|.+.+++-.
T Consensus 471 eA~~~~~~A~ 480 (517)
T PRK10153 471 LAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 166
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.44 E-value=0.7 Score=34.82 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH-HHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV-HACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~ll 148 (219)
+...|..+|+.+.+.|++.. +..+.+.++-||.......+-.... ....+.++ ++++.+.+. .+..++
T Consensus 28 ~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~ii 96 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEII 96 (167)
T ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHH
Confidence 55677777777777776543 4466666777776666655544432 33444555 444444442 345566
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
+.+...|++ -+|.++.+.....+ .+....++.+-.+.+
T Consensus 97 evLL~~g~v------------------l~ALr~ar~~~~~~-~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 97 EVLLSKGQV------------------LEALRYARQYHKVD-SVPARKFLEAAANSN 134 (167)
T ss_pred HHHHhCCCH------------------HHHHHHHHHcCCcc-cCCHHHHHHHHHHcC
Confidence 677777777 99999998865554 455566666655554
No 167
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.33 E-value=0.3 Score=39.96 Aligned_cols=87 Identities=8% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN-GLLVESLTCFVR 96 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 96 (219)
+..+-...-+..|.+.|++.|..+|+.||+.+=+-.-.- -|.+-.-|... .+-+=+..++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~nvfQ~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QNVFQKVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HHHHHHHHhhCchhhhHHHHHHHH
Confidence 445555556667777777777777777776554432211 11111111111 123445678888
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccC
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~ 121 (219)
|...|+.||..+=..|++++++.+-
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccc
Confidence 8888888888888888888887654
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.27 E-value=0.19 Score=31.29 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC-ChhHHHHHHHHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG-LLVESLTCFVRM 97 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 97 (219)
.+|..+=..+.+.|++++|+..|.+.. .|.+...|..+=.+|...| ++++|.+.|+.-
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344455555555666666666655432 2213455555555555555 466666555543
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.22 E-value=2.2 Score=34.91 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.08 E-value=0.54 Score=40.91 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH-HHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT-NNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~ll 148 (219)
+.+|-+.|++-.+..-++.|..+|.+.++.| +.++.++++++|..++. |+...|..+|+.=.+. + ||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 4678889999999888999999999999998 67999999999999985 7788888888752222 2 33222 23445
Q ss_pred HHHHhcCCc
Q 041894 149 NMYAQSQNM 157 (219)
Q Consensus 149 ~~y~~~g~~ 157 (219)
..+.+.++-
T Consensus 474 ~fLi~inde 482 (660)
T COG5107 474 LFLIRINDE 482 (660)
T ss_pred HHHHHhCcH
Confidence 556666665
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.69 E-value=0.29 Score=30.43 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhccc-ChhhHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLV-DFRFGESVHACII 133 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 133 (219)
.+|..+=..+...|++++|...|.+..+. .|+ ...|..+-.+|...| ++++|.+.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44445555555555555555555554432 232 234444444444555 4555555554443
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.58 E-value=1.2 Score=36.29 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~l 77 (219)
..|...+.-..+.|+++.|...|+..++..-... ...+--+-..|...|++++|...|..+. .|.+ ..++-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555544566999999999999987642211 2456677778899999999999999885 3412 2344445
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
...+...|+.++|..+|++..+. -|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 66777899999999999998765 3554
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.55 E-value=0.18 Score=32.29 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
.+++.+-..|...|++++|.++|++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444555555555555555443
No 174
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=2.6 Score=37.14 Aligned_cols=148 Identities=10% Similarity=-0.011 Sum_probs=106.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|+.-.+...|+..++..-.++. .|=.+-..|....+.++-...|+.... |-|+.+|--==+-+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 47788889999998887644333 144455568888888888888887652 215556655445555556788888777
Q ss_pred HHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCc
Q 041894 95 VRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173 (219)
Q Consensus 95 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g 173 (219)
++-.+ +.|. ...|.-+-.+.-+.+.++.++..|++.++. ++....+||-.-..+...+++
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF---------------- 478 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF---------------- 478 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH----------------
Confidence 76544 3453 344544444445888999999999998665 677788999999999999999
Q ss_pred chhhHHHHhhcCC
Q 041894 174 REASVHEVLDKIP 186 (219)
Q Consensus 174 ~~~~a~~l~~~m~ 186 (219)
++|.+.|+...
T Consensus 479 --d~A~k~YD~ai 489 (606)
T KOG0547|consen 479 --DKAVKQYDKAI 489 (606)
T ss_pred --HHHHHHHHHHH
Confidence 99999998755
No 175
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=0.77 Score=37.93 Aligned_cols=123 Identities=14% Similarity=0.015 Sum_probs=84.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-------------CcHH--------HHHHHHHH-------HhhcCCHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-------------NSRF--------LISRLLFI-------YNNFNLVH 56 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-------------~~~~--------~~~~ll~~-------~~~~g~~~ 56 (219)
.+||..|- ..+.++..+|.++.++++++|+. ||+. .-+.++.+ +.+.|+.+
T Consensus 180 lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 46777664 45789999999999999999864 2221 12334433 46789999
Q ss_pred HHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 57 DSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 57 ~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.|.+.+-.|+.+. |++|...+--.= -.+++.+.++-+.-+++- .| -..||..++--||+..-++.|-.++.+
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999998431 666654432211 235666666666555443 44 346999999999999999999888765
No 176
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.42 E-value=0.055 Score=39.31 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=63.8
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 88 (219)
.+++.+.+.+.++....+++.+.+.+-..+....+.++..|++.+..+...++++. . +..-...+++.|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~-~~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S-NNYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S-SSS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c-cccCHHHHHHHHHhcchHH
Confidence 35677777888888888888888777667788889999999999887888887773 2 3344566777777888888
Q ss_pred HHHHHHHHhH
Q 041894 89 ESLTCFVRMI 98 (219)
Q Consensus 89 ~a~~~~~~m~ 98 (219)
+|.-+|..+.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8877776653
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=2.1 Score=36.35 Aligned_cols=145 Identities=11% Similarity=0.139 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
.++.|++.|+..-.++..-|+.. -.++-+.+.-..++++++..++.++ .. |..-|| +-++++.-|++.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-D~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-DDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhH-HHHHHHHhcChHHHHHH
Confidence 35566666666655554433322 2334444445556666666666665 22 344343 55677777778888777
Q ss_pred HHHhHhCCCCCCcccHHHHH-HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH-HHHHhcCCchhHHHHHhhhhccC
Q 041894 94 FVRMIGSGVYPDHNVFPSVL-KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM-NMYAQSQNMDMHIYDRFQGFGFN 171 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~y~~~g~~~~~~~~~~~~~~~~ 171 (219)
|-......+ -|..+|.+++ ++|.+.+..+.| |+.|.+..-..+..+.--|| .-+-+.+.+
T Consensus 416 f~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eF-------------- 477 (557)
T KOG3785|consen 416 FIRISGPEI-KNKILYKSMLARCYIRNKKPQLA---WDMMLKTNTPSERFSLLQLIANDCYKANEF-------------- 477 (557)
T ss_pred HhhhcChhh-hhhHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchhHHHHHHHHHHHHHHHHHH--------------
Confidence 755433332 3445555544 455677777644 44455544444444444444 233345555
Q ss_pred CcchhhHHHHhhcCCC
Q 041894 172 GGREASVHEVLDKIPE 187 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~ 187 (219)
--|-+-|+.++.
T Consensus 478 ----yyaaKAFd~lE~ 489 (557)
T KOG3785|consen 478 ----YYAAKAFDELEI 489 (557)
T ss_pred ----HHHHHhhhHHHc
Confidence 667777776663
No 178
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.30 E-value=1.2 Score=41.60 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=65.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH--hhcCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY--NNFNLVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..++++.|....+++.+. .|+.. |...+.++ .|.|..++|..+++....++ |..|..++-.+|...|++++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 445666666666655443 23322 33334433 45666677776666554221 5666677777777777777777
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.+|++..+ .-|+..-...+..+|.+.+.+..-.++-=+|-+
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766543 346666666666777766666555554333433
No 179
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=1.2 Score=37.13 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=76.5
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 32 KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 32 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
..|...+..+...++.--....+++.++..+-.++...+. .+--++++-+.+ -+++++..++..=..-|+=||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3455556666777777777788899999988888732121 222334555554 5799999999888888999999
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+++.+|+.+.+.+++.+|-++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999885555443
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.25 E-value=0.59 Score=29.30 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=31.2
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+.|.+.+++++|.++++.+.+.. +-+...+...-..+.+.|+++.|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34555666666666666655432 1133344444555556666666666666655544
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.15 E-value=2.6 Score=40.12 Aligned_cols=144 Identities=8% Similarity=-0.018 Sum_probs=90.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhcC----CCC--C--hhhHHHHHHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR----FLISRLLFIYNNFNLVHDSLCLLDTLK----TPA--P--PVAWKSIIRCC 81 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~--~--~~~~~~li~~~ 81 (219)
+...|+++.|...++...+.--..+. ...+.+-..+...|++++|...+.+.. ..+ . ..+++.+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45688999999999987763211122 234555556778999999998887653 110 1 23445556677
Q ss_pred HhcCChhHHHHHHHHhHh----CCCC--C-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIG----SGVY--P-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLDLYTNNALMNM 150 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~ 150 (219)
...|++++|...+++... .+.. | ....+..+-..+...|+++.|...+...... +.......+..+-..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999888643 2221 1 1222334444556679999999888775432 211123344445567
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+...|+.
T Consensus 622 ~~~~G~~ 628 (903)
T PRK04841 622 SLARGDL 628 (903)
T ss_pred HHHcCCH
Confidence 7788888
No 182
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.13 E-value=2.3 Score=30.50 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=79.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
..++..+...+..+.+..+++.+... .+....|.+|..|++. +.++..+.+.. .++.+....+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45667777777788888887776422 1456788888888876 35555555542 245566667888888888
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc-CCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHH
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS-QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLA 199 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~-g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~ 199 (219)
.++.+..++..+ |. |.-.+..+... +++ +.|.+++.+- .+ ...|..++.
T Consensus 84 l~~~~~~l~~k~---~~------~~~Al~~~l~~~~d~------------------~~a~~~~~~~--~~-~~lw~~~~~ 133 (140)
T smart00299 84 LYEEAVELYKKD---GN------FKDAIVTLIEHLGNY------------------EKAIEYFVKQ--NN-PELWAEVLK 133 (140)
T ss_pred cHHHHHHHHHhh---cC------HHHHHHHHHHcccCH------------------HHHHHHHHhC--CC-HHHHHHHHH
Confidence 887777776654 21 11223333333 667 9999988873 24 567777777
Q ss_pred HHhh
Q 041894 200 GCNK 203 (219)
Q Consensus 200 ~~~~ 203 (219)
.+..
T Consensus 134 ~~l~ 137 (140)
T smart00299 134 ALLD 137 (140)
T ss_pred HHHc
Confidence 6653
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.88 E-value=2.6 Score=39.61 Aligned_cols=110 Identities=10% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHhCc--cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 7 LINLLKNP--VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 7 ~~~ll~~~--~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
|..+++++ .+.|..+.|..+++.....+.. |..|...+-.+|-..+++++|..+++... .| +......+.-+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-SEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-cHHHHHHHHHHHH
Confidence 44445543 4667777777777766555534 77777777777777888888877777765 34 4455555666666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (219)
+.+++.+-.+.=-+|.+. ++-+.+.|-++++-..+.
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHh
Confidence 666655444333333332 233456677777666543
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=1.3 Score=36.45 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=76.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+.+++..|...|.+.++.. +-|.+-|..--.+|++.|..+.|.+--..-..- .-..+|..|=.+|...|++.+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 346678889999999888765 447777888888999999888887766554432 02467888888899899999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
+.|+.-++ +.|+..+|-.=|+...+
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 88876554 67888888776666553
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.72 E-value=0.45 Score=29.89 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
..|.+.++++.|.++++.+. .|.+...|...=..+.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666666554 232445555555666666666666666666554
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.61 E-value=2.3 Score=37.09 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc----cHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN----VFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
+...|+.+-.+|.+.|++++|...|+.-++ +.|+.. +|..+-.+|...|+.++|...++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666777777777777777766444 245532 3666666667777777777666665543
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.40 E-value=0.22 Score=31.90 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=47.8
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcC--CC---Cc-HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTL--EP---NS-RFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g--~~---~~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
.+|+.+=..+...|++++|...|++..+.. +. |+ ..+++.+=..|...|++++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888889999999999999999887652 22 22 45678888899999999999999875
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.34 E-value=0.99 Score=36.94 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-----CCCCCCcccHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-----SGVYPDHNVFPSVL 113 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll 113 (219)
++..++..+...|+.+.+.+.++++. .|-|...|-.+|.+|.++|+...|.+.|+.+.+ -|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 34555556666666666666666554 222555666666666666666666666666543 25555555444444
Q ss_pred HH
Q 041894 114 KS 115 (219)
Q Consensus 114 ~~ 115 (219)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 189
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.09 E-value=6.5 Score=35.20 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 18 KTKSQAKQLHAQI-FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 18 ~~~~~a~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
..+....++|-.+ .+.+-.+|..++..|=-.|--.|.+++|..-|+..- .|-|-.+||-|=-.++...+..+|...|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445555555555 455656788888888888999999999999998753 4437899999999999888999999999
Q ss_pred HHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHH---HHHhC------CCccHHHHHHHHHHHHhcCCc
Q 041894 95 VRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHAC---IIRLG------VDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 95 ~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~---m~~~g------~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+-++ +.|+.+ ....|-=+|...|.+++|...|=. |.+.+ ..++...|.+|=.++.-.++.
T Consensus 488 ~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 488 NRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 98776 578753 444445578899999998877554 33321 112345788877777777777
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.71 E-value=1.2 Score=36.41 Aligned_cols=149 Identities=6% Similarity=-0.022 Sum_probs=77.4
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC--CC---cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCC--C--hhh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE--PN---SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPA--P--PVA 73 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~--~--~~~ 73 (219)
|...-+.|-..+++++|-..|.+..+... .. -...|.....+|-+. ++++|...+.+.. ..+ + ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44444455556666666666665533221 11 112344444444333 6666666555432 111 1 234
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHhH----hCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-----ccH
Q 041894 74 WKSIIRCCTQN-GLLVESLTCFVRMI----GSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-----LDL 141 (219)
Q Consensus 74 ~~~li~~~~~~-g~~~~a~~~~~~m~----~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~ 141 (219)
+..+-..|-.. |++++|.+.|.+-. ..+ .|. ...+.-+...+.+.|++++|..+++.+...-+. .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 55566666666 78888888887743 233 221 235566777788889999999999988765432 222
Q ss_pred H-HHHHHHHHHHhcCCc
Q 041894 142 Y-TNNALMNMYAQSQNM 157 (219)
Q Consensus 142 ~-~~~~ll~~y~~~g~~ 157 (219)
. .+-..+-++.-.|+.
T Consensus 196 ~~~~l~a~l~~L~~~D~ 212 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDY 212 (282)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 2 222223355556777
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.49 E-value=7.2 Score=37.14 Aligned_cols=181 Identities=10% Similarity=-0.006 Sum_probs=107.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcCC------CC-Chh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKT----LEP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLKT------PA-PPV 72 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------~~-~~~ 72 (219)
+..+-..+...|+++.|...+++..+. +.. + ....+..+-..+...|++++|...+.+... +. ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 344445667889999999988876553 221 1 223344444556777999999988876521 10 123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHH-----HHHHHHhcccChhhHHHHHHHHHHhCCCcc---HHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFP-----SVLKSCTLLVDFRFGESVHACIIRLGVDLD---LYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~ 143 (219)
.+..+-..+...|++++|.+.+.+...-.- ......+. ..+..+...|+.+.+.+.+........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 344455677788999999999888743210 01111111 122444557888888888666433211111 111
Q ss_pred HHHHHHHHHhcCCchhH--HHHHhh--------------------hhccCCcchhhHHHHhhcCCC
Q 041894 144 NNALMNMYAQSQNMDMH--IYDRFQ--------------------GFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~--~~~~~~--------------------~~~~~~g~~~~a~~l~~~m~~ 187 (219)
+..+-.++...|+.+++ .++... ..+.+.|+.++|.+.+.+..+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888988776 232211 113478888999999999873
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=90.97 E-value=2.2 Score=32.00 Aligned_cols=85 Identities=6% Similarity=-0.072 Sum_probs=63.6
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~ 124 (219)
-+...|++++|+.+|.-+. .|.|..-|..|=.++-..+++++|...|.....-.. .|-+.- -.=.++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCCHHH
Confidence 3456899999999999876 332666677888888888999999999987443321 233323 33478888999999
Q ss_pred HHHHHHHHHH
Q 041894 125 GESVHACIIR 134 (219)
Q Consensus 125 a~~~~~~m~~ 134 (219)
|+..|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998766
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.90 E-value=7.8 Score=33.93 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
.+...++.+=.+|.+.|++++|...|+.-- .|.+. .+|..+-.+|.+.|+.++|...|++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355678889999999999999999998743 45123 45999999999999999999999998764
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.77 E-value=11 Score=33.29 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHhh----cCCHHHHHHHHHhcC--CCCChhh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSR-----FLISRLLFIYNN----FNLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~-----~~~~~ll~~~~~----~g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
.+..+|...+=.||-+.+.+++.+..+.+ +.... ..|...+..++- ....+.|.++++.+. .| +...
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP-~s~l 268 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP-NSAL 268 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC-CcHH
Confidence 45667777888899999999888776644 32111 235555554443 467889999999987 48 8877
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHhHhCC--C-CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 74 WKSIIRC-CTQNGLLVESLTCFVRMIGSG--V-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 74 ~~~li~~-~~~~g~~~~a~~~~~~m~~~g--~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
|.-.-.. +...|++++|.+.|++..... . +.....+--+.-.+....++++|...+..+.+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 7766643 444699999999999755322 1 1222333345556677899999999999987653
No 195
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.52 E-value=4.2 Score=33.40 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHh-cC-ChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhcccChh
Q 041894 52 FNLVHDSLCLLDTLKT-----PAPPVAWKSIIRCCTQ-NG-LLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 52 ~g~~~~A~~~~~~m~~-----~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~ 123 (219)
+..+-+|+++|+.... . |..+-..+++.... .+ .+..-+++.+-+... |-.|+..+..++|..++..+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~-d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIF-DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcccceee-ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3446777777774322 2 55666667777766 22 344445555555533 56788899999999999999999
Q ss_pred hHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 124 FGESVHACIIRL-GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 124 ~a~~~~~~m~~~-g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
.-.+++..-... +...|...|..+|+.....|+. +-.+.+.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~------------------~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ------------------EVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH------------------HHHHHHhhC
Confidence 999998886655 6778999999999999999999 877777775
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=12 Score=33.75 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=101.6
Q ss_pred hHHHHHHhCccccCC--hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH--------hcCC--CCChh
Q 041894 5 KTLINLLKNPVSIKT--KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD--------TLKT--PAPPV 72 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~m~~--~~~~~ 72 (219)
+.+.+++..+.+... ...+..++...-+..-.-...+.-+++-.....|+++.|.+++. .+.. . .+-
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-Chh
Confidence 345555555544432 44455555554433322234455666677888999999999988 3331 1 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCcccHHHHHH----HHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLK----SCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
+-.++..-+.+.++-+.|-.++++-.+.. -.+......+++. .=-+.|..++|..+++++.+.. .+|..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 55666777777777777777877755321 1222222222222 2236699999999999998854 588999999
Q ss_pred HHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 147 ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++.+|++. ++ ++|..+=..+.
T Consensus 498 lV~a~~~~-d~------------------eka~~l~k~L~ 518 (652)
T KOG2376|consen 498 LVTAYARL-DP------------------EKAESLSKKLP 518 (652)
T ss_pred HHHHHHhc-CH------------------HHHHHHhhcCC
Confidence 99999985 45 77777766554
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.38 E-value=11 Score=35.71 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=73.8
Q ss_pred hHHHHHHh--CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC------------CCC
Q 041894 5 KTLINLLK--NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT------------PAP 70 (219)
Q Consensus 5 ~~~~~ll~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------------~~~ 70 (219)
+|=..+|+ -|...|+++.|.+-...+. +..+|..|-++|.+..+++-|.--+..|+. .++
T Consensus 727 ~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred HHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 33344443 4556677777665544433 455677777777777777777666666641 101
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH------
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN------ 144 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------ 144 (219)
.+=.-+----...|.+++|..+|++=.+ |..|=+-|-..|.+++|.++-+.=-+-.+..+-+-|
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1111111122345667777776665332 223333444556666666664433332332222222
Q ss_pred ----HHHHHHHHhcCCchhHHHHHhhhhc
Q 041894 145 ----NALMNMYAQSQNMDMHIYDRFQGFG 169 (219)
Q Consensus 145 ----~~ll~~y~~~g~~~~~~~~~~~~~~ 169 (219)
..-|.-|-+.|...--+|+++.++.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 2333444444444333555555554
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=7.3 Score=32.03 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=62.9
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC---ChhHHHHHHHHhHhCCCCCC-ccc
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG---LLVESLTCFVRMIGSGVYPD-HNV 108 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~-~~t 108 (219)
+-|...|-.|=..|.+.|+...|...|..-. .+ |...+..+-.++.... .-.++..+|++..+. .|+ ..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4466777777777888888887777776543 33 5555555555554442 346677777777654 233 334
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
-.-+--.+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4445556667778888888888777764
No 199
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.05 E-value=3.2 Score=36.25 Aligned_cols=133 Identities=10% Similarity=0.074 Sum_probs=92.0
Q ss_pred hhcCCHHHHHHHHHhcC---CC--C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH--hcc
Q 041894 50 NNFNLVHDSLCLLDTLK---TP--A---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLL 119 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~---~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~ 119 (219)
-+.++.++|+++|-.+- +. . ..+.-+-+|++|... +++.....+.+..+. .| ...|-.+..+. -+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 45788999999998764 11 0 135677899999975 677777777776653 34 44555666554 367
Q ss_pred cChhhHHHHHHHHHHh--C------------CCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 120 VDFRFGESVHACIIRL--G------------VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~--g------------~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.++.|.+.++.-... + +-+|...-+...+++...|++ .+++.++++|
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f------------------~EgR~iLn~i 154 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF------------------SEGRAILNRI 154 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc------------------chHHHHHHHH
Confidence 8888888887776544 2 123444456677889999999 9999998887
Q ss_pred CC--------CCCeeehhHHHHHHhhhh
Q 041894 186 PE--------RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 186 ~~--------~~~~~~~n~ll~~~~~~~ 205 (219)
.. -+ +-+||-++--+.|+-
T Consensus 155 ~~~llkrE~~w~-~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 155 IERLLKRECEWN-SDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHhhhhhccc-HHHHHHHHHHHhHHH
Confidence 62 25 778888777776664
No 200
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.96 E-value=2.2 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-HhCCCccHHHHHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDLYTNNALMN 149 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~ 149 (219)
+..+-+..+..-.+.|+..+..+.|++|-+.+++..|.++++-++ +.|- +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 334444455555678888888888888888888888888888765 4332 4446666654
No 201
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=12 Score=32.47 Aligned_cols=79 Identities=9% Similarity=0.062 Sum_probs=47.9
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
...++++.|.-+-++.++.. +.+.. ..++. ++...+++++|.-.|+..+ .|-+...|--|+++|...|.+.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~--alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHE--ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccch--HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 34566777777766666543 11111 22222 4456777888877777654 332677788888888888877777
Q ss_pred HHHHHH
Q 041894 91 LTCFVR 96 (219)
Q Consensus 91 ~~~~~~ 96 (219)
...=++
T Consensus 388 ~~~An~ 393 (564)
T KOG1174|consen 388 NALANW 393 (564)
T ss_pred HHHHHH
Confidence 654433
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.76 E-value=4.8 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=40.0
Q ss_pred hhcCCHHHHHHHHHhcC--CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhc
Q 041894 50 NNFNLVHDSLCLLDTLK--TPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~ 118 (219)
.+.|++++|.+.|+.+. .|. ...+--.|+.+|.+.+++++|...++++++.. -.|+ .-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 35566777777777665 121 23455567777777777777777777765532 2232 355555565553
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.67 E-value=3.9 Score=33.66 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=72.4
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.+.+++++|+..|.+-.+ +.| |.+-|..=-.+|++.|..+.|.+-.+.-.+.. ..-...|..|=.+|.-.|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~--- 165 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY--- 165 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH---
Confidence 556889999999988765 355 56777777888999999988887776655543 23477888888888888888
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHH
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGC 201 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~ 201 (219)
++|.+.|.+-. +|+ ..+|..=|..-
T Consensus 166 ---------------~~A~~aykKaLeldP~-Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 ---------------EEAIEAYKKALELDPD-NESYKSNLKIA 192 (304)
T ss_pred ---------------HHHHHHHHhhhccCCC-cHHHHHHHHHH
Confidence 88888888766 355 44565555543
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.63 E-value=9.3 Score=30.58 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=96.4
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHH---HHHHHHHhhcCCHHHHHHHHHhcC--CCC-ChhhHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLI---SRLLFIYNNFNLVHDSLCLLDTLK--TPA-PPVAWKSIIR 79 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~~li~ 79 (219)
.|..... +.+.|+++.|...|+.+.+.--.+ .... --+..+|.+.++.++|...|+++. .|. ....|--.+.
T Consensus 35 ~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQ-KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3343443 457899999999999998864332 3333 334567899999999999998874 221 2234444444
Q ss_pred HHHh-----------------cCC---hhHHHHHHHHhHhC----CCCCCcccHH------------HHHHHHhcccChh
Q 041894 80 CCTQ-----------------NGL---LVESLTCFVRMIGS----GVYPDHNVFP------------SVLKSCTLLVDFR 123 (219)
Q Consensus 80 ~~~~-----------------~g~---~~~a~~~~~~m~~~----g~~p~~~t~~------------~ll~~~~~~g~~~ 123 (219)
+.+. ..+ ..+|+..|+++++. ...|+....- .+-+-|-+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 4431 112 24566677776654 1222222111 2445688999999
Q ss_pred hHHHHHHHHHHhC--CCccHHHHHHHHHHHHhcCCchhH
Q 041894 124 FGESVHACIIRLG--VDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 124 ~a~~~~~~m~~~g--~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
-|..-++.+.+.= -.......-.++.+|...|..+.+
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 9999999988762 223455556778999999988766
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.62 E-value=6.3 Score=28.71 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+...+++....|.-++-..+...+.+++ +++....-.+-.+|.+.|..
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~ 136 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNT 136 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcch
Confidence 3445666666677777777766665543 55566666667777777777
No 206
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=89.42 E-value=8.1 Score=35.20 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCcHHHHH--HHHHHHhhcCCHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 36 PNSRFLIS--RLLFIYNNFNLVHDSLCLLDTLKTPAPPV---AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 36 ~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
+|+...|+ -+...|-+.|+++.|...++..... .+. .|..=-+-+.++|++++|...+++-++-. .||...=+
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 45665554 4566788899999999999887643 222 24333477788999999999999987654 56665554
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH----------HHHHhcCCchhH
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM----------NMYAQSQNMDMH 160 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll----------~~y~~~g~~~~~ 160 (219)
--.+...++...++|..+...--+.|. +...+-+.+ .+|.|.|++..|
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 566677788999999999888777774 332222222 566777777555
No 207
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.39 E-value=2.6 Score=32.06 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
..+..+-.-|.+.|+.++|++.|.++++....|.. ..+-.+|..+...+++..+........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667777788888888888888887766555543 456667777777777777776655543
No 208
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=89.32 E-value=0.43 Score=34.45 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
...+.|.-.+|+.+|..|+++|-+|| .|+.|+..+.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 34456777889999999999998888 6888887653
No 209
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.23 E-value=4.8 Score=35.99 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=81.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-h-hhHHHHHHHHHhcCChhH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-P-VAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~-~~~~~li~~~~~~g~~~~ 89 (219)
|.-.|.+++|.+-|...++.. +-|..+||.|=..++...+.++|+..+++.. +| + + +-||.-|+ |...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS-~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGIS-CMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-Ceeeeehhhhhh-hhhhhhHHH
Confidence 455789999999999998765 4477899999999999999999999998765 56 4 3 33665554 566799999
Q ss_pred HHHHHHH---hHhCCC------CCCcccHHHHHHHHhcccChhhHHH
Q 041894 90 SLTCFVR---MIGSGV------YPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 90 a~~~~~~---m~~~g~------~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
|.+.|-+ |.+.+- .++...|.+|=.+.+-.+..|.+.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999877 443322 2344577777766666666654443
No 210
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.20 E-value=11 Score=30.96 Aligned_cols=118 Identities=15% Similarity=0.011 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHHHHHhhc-C-CHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCc
Q 041894 35 EPNSRFLISRLLFIYNNF-N-LVHDSLCLLDTLK-----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDH 106 (219)
Q Consensus 35 ~~~~~~~~~~ll~~~~~~-g-~~~~A~~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 106 (219)
+--|..+...++...... + .+..-.++.+-+. .+ +..+--++|..++..+++.+-+++++.-... +-.-|.
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l-~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~ 238 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSL-TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDP 238 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCC-ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC
Confidence 445677777777777662 2 2233333333332 45 7788899999999999999999999875544 445678
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHH-----HHHhCCCccHHHHHHHHHHHHh
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHAC-----IIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
..|..+|+.-...|+....+.+... +++.++..+...-.+|-+.+-+
T Consensus 239 rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 239 RPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred chHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 8999999999999999888887766 5677777777777776666544
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=12 Score=30.73 Aligned_cols=135 Identities=9% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHH-----H
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSII-----R 79 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li-----~ 79 (219)
.++..+--.+.+.-...++...++..-+.++...+.|.+.-.+.|+.+.|...|+..+ .. |..+.+.++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhhhh
Confidence 3344444446666667777777776666678888888888899999999999999654 22 444455444 2
Q ss_pred HHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
-|.-++++-.|...|++..... -.|-.+.=.+++.-|. |+..+|.+..+.|+.. .|...+-++++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3444578888888898876542 2233333334444444 7889999999888775 46555666554
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.84 E-value=4.8 Score=33.00 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH-----hCCCccHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR-----LGVDLDLYTNNA 146 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 146 (219)
.++..++..+..-|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|...+..+.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567778888888899999999999987653 45788999999999999999999999888765 699999888888
Q ss_pred HHHHH
Q 041894 147 LMNMY 151 (219)
Q Consensus 147 ll~~y 151 (219)
..+..
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77773
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.62 E-value=7.6 Score=28.29 Aligned_cols=119 Identities=4% Similarity=-0.062 Sum_probs=70.3
Q ss_pred cCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHH-----------------hhcCCHHHHHHHHHhcCCCCChhhHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIY-----------------NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~-----------------~~~g~~~~A~~~~~~m~~~~~~~~~~~l 77 (219)
.|..++..++......++- +.+=+..|.+=.+- ..+++++....-+..+. . +..-.+..
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-~-~se~vD~A 92 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-K-LSEYVDLA 92 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----HHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-c-hHHHHHHH
Confidence 4667777888777766541 11112222221111 22344444444444332 2 45567888
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
++.....|+-++-.+++.++.+++ +|+......+-++|.+.|+.+++..++.+.=+.|++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 899999999999999999987644 677778888899999999999999999888888863
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=4.9 Score=32.55 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC----CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG----VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNA 146 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ 146 (219)
.|+.-+..+. .|++.+|...|.+.++.. ..||..-| |-.++...|+++.|..+|..+.+.-.+.. ....--
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5999998876 578999999999998763 55665555 67889999999999999999887643321 234555
Q ss_pred HHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 147 ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
|-....+.|+. ++|+..|++..++
T Consensus 221 lg~~~~~l~~~------------------d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNT------------------DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCH------------------HHHHHHHHHHHHH
Confidence 56677788888 9999988887754
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.48 E-value=6.5 Score=31.88 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH---HHHHHHhcCChhHHHHHHHHhHhC-CCCCCc-ccHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS---IIRCCTQNGLLVESLTCFVRMIGS-GVYPDH-NVFPSVL 113 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~ll 113 (219)
.|+.-+..| +.|++..|...|.... .|.+..+=|+ |-+++...|++++|-.+|..+.++ +-.|.. ..+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666554 3445777777777654 2313333333 556777777777777777777654 222222 3444555
Q ss_pred HHHhcccChhhHHHHHHHHHHh
Q 041894 114 KSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+..+.|+.+.|..+++++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666777788888888777665
No 216
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.25 E-value=6.5 Score=27.07 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+-. ...+--+-++.+.+.|++++|..+.+.+..| |...|-+|-. .+.|..+++..-+..|-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~p-dlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYP-DLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCc-hHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345666666666554422 2222233344566777777777777777777 7777766643 34555565555555665
Q ss_pred hCCCCCCcccH
Q 041894 99 GSGVYPDHNVF 109 (219)
Q Consensus 99 ~~g~~p~~~t~ 109 (219)
.+| .|-...|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 555 3433333
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.25 E-value=13 Score=32.94 Aligned_cols=124 Identities=9% Similarity=0.045 Sum_probs=78.1
Q ss_pred HHHHHHhCccc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcCCHHHHHHHHHhcCCCC------ChhhH
Q 041894 6 TLINLLKNPVS----IKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPA------PPVAW 74 (219)
Q Consensus 6 ~~~~ll~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~------~~~~~ 74 (219)
+|..++..++. ....+.++++++.+.++ -|+...|.-.-. .+...|++++|.+.|+.....+ ....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555554443 45788899999998876 567666655444 5566899999999999643210 12223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--cccCh-------hhHHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDF-------RFGESVHACII 133 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~-------~~a~~~~~~m~ 133 (219)
==+..++.-..++++|...|..+.+.. ..+..+|. .+.++| ..|+. ++|..++....
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~-Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYA-YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHH-HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 334455666789999999999988642 22333333 333333 44656 77777777643
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.21 E-value=15 Score=32.24 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcCCHHHHHHH-----------------------HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 42 ISRLLFIYNNFNLVHDSLCL-----------------------LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~-----------------------~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
.+.++.-+-+.|.++.|+.+ -.+. + +...|..|=+...+.|+++-|.+.|....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~--~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL--D-DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC--S-THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc--C-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 56666666666666666555 3222 2 45788888888888888888888886632
Q ss_pred hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 99 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
-|..|+--|.-.|+.+.-.++-+.-...| -+|.-..++.-.|+.
T Consensus 375 ---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 375 ---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDV 418 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred ---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCH
Confidence 45666666777777776666666555555 345555566666777
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=88.17 E-value=4.4 Score=30.42 Aligned_cols=84 Identities=7% Similarity=-0.141 Sum_probs=65.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
+.+.|+++.|+.+|..+-..++. +..-|..|=.++-..+++++|...|... ... |...+=-.=.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 45789999999999999877643 4444677777778889999999998753 233 555555666888999999999
Q ss_pred HHHHHHhHh
Q 041894 91 LTCFVRMIG 99 (219)
Q Consensus 91 ~~~~~~m~~ 99 (219)
...|..-..
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999977655
No 220
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.71 E-value=17 Score=33.47 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=65.1
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC---------CCChhhHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---------PAPPVAWKSI 77 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~~l 77 (219)
|...|.-....+-++.+.+++.+-++ .++..-+-.|..+++.++.++|-+.+..... +.+...|.-+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 33344444444555555555555442 3344456677788888888888888776531 1133445544
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC--CCCc--ccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGV--YPDH--NVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~--~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
-+-..++-+.-..+.+ ++..+.|+ -||. ..|++|-+.|.++|.++.|+.++++-.+
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444443222222211 12222222 2443 3566777777777777777777666443
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=14 Score=30.20 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCC-C--------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTP-A--------PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 112 (219)
+++|+..+.-...+++-...++.=..| . -..+-++++..+.-.|.+.-....+.+.++..-+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455665555544444444444321111 0 2245567888888888899899999888875444566667777
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH-----HHHhcCCchhH-H-HHHhhhh------------cc--C
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN-----MYAQSQNMDMH-I-YDRFQGF------------GF--N 171 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-----~y~~~g~~~~~-~-~~~~~~~------------~~--~ 171 (219)
.+.-.+.||.+.|...|+...+..-..|-.+.+.++. .|.-.+++..+ + |++|..- +| =
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 7777888999999999998876654556555655553 22333344333 2 3332211 12 2
Q ss_pred CcchhhHHHHhhcCCCCCC-eeehhHHHHHH
Q 041894 172 GGREASVHEVLDKIPERNG-NVELSSGLAGC 201 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~~~-~~~~n~ll~~~ 201 (219)
.|+..+|.+.++.|....- ..+-++++-.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 6888999999999986540 34445544443
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=10 Score=31.15 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=84.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCcccHHHHHHHH---hcccChhhHHHHHHHHHHhCCCccHHH
Q 041894 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSC---TLLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
|+|...|--|=..|...|+.+.|..-|.+-.+ .|=+|+ .+..+-.++ ....+..++..++++..+.. ..|...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 44889999999999999999999999998654 444444 443333333 33445778889999988765 346666
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhh
Q 041894 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNK 203 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~ 203 (219)
-.-|=..+-..|++ .+|...++.|.+. . ..+|..+|..-..
T Consensus 230 l~lLA~~afe~g~~------------------~~A~~~Wq~lL~~lp~-~~~rr~~ie~~ia 272 (287)
T COG4235 230 LSLLAFAAFEQGDY------------------AEAAAAWQMLLDLLPA-DDPRRSLIERSIA 272 (287)
T ss_pred HHHHHHHHHHcccH------------------HHHHHHHHHHHhcCCC-CCchHHHHHHHHH
Confidence 66666788889999 9999999998853 3 4788888876543
No 223
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=87.46 E-value=18 Score=33.64 Aligned_cols=124 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHh
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCT 117 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~ 117 (219)
.|...-..+.+.++.++|..-+.+...- -....|.-.=..+...|+..+|.+.|..-.. +.|+.+ +.+++-..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3555666777778888887666655432 0223344443455566888899888877554 567754 7888888889
Q ss_pred cccChhhHHH--HHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 118 LLVDFRFGES--VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 118 ~~g~~~~a~~--~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.|+...+.. ++..+.+.+ +.+...|-.|=..+-+.|+. ++|-+-|+..
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~------------------~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS------------------KQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch------------------HHHHHHHHHH
Confidence 9998887777 888888887 56788899999999999999 8888888753
No 224
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=14 Score=29.94 Aligned_cols=169 Identities=8% Similarity=0.060 Sum_probs=110.3
Q ss_pred ccCChhHHHHHHHHHHH---cC-CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC--h-hhHHHHHHHHHhcC
Q 041894 16 SIKTKSQAKQLHAQIFK---TL-EPNSRF-LISRLLFIYNNFNLVHDSLCLLDTLK--TPAP--P-VAWKSIIRCCTQNG 85 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~---~g-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~--~-~~~~~li~~~~~~g 85 (219)
...+.++..+++.+++. .| ..++.+ .|-.++-+-.-.|+.+-|...++++. -|++ + .....++.+ .|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa---~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA---TG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---hh
Confidence 44567888888888864 34 566766 45677777778889999999988865 2311 1 223333333 47
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--HH
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--YD 163 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--~~ 163 (219)
+.++|.++|+..++.. +-|.+++.-=+-..-..|.--.|.+-+....+. +..|...|--|-+.|...|+++.|+ ++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 8999999999998776 445666654333333334444454444433222 6789999999999999999999884 34
Q ss_pred H--------------hhhhcc---CCcchhhHHHHhhcCCCCC
Q 041894 164 R--------------FQGFGF---NGGREASVHEVLDKIPERN 189 (219)
Q Consensus 164 ~--------------~~~~~~---~~g~~~~a~~l~~~m~~~~ 189 (219)
. +.+..+ -..+++-|+++|.+-.+-+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3 222222 2345677888888766555
No 225
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.32 E-value=13 Score=29.64 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhH---HHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAW---KSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLK 114 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~ 114 (219)
.|.. -..+.+.|++++|.+.|+++. .|.+..+- -.+..++.+.+++++|...|++..+.- -.|+ .-|...+.
T Consensus 35 ~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~ 112 (243)
T PRK10866 35 IYAT-AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMR 112 (243)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHH
Confidence 3443 344566899999999999986 34122322 345688899999999999999987652 2233 24445555
Q ss_pred HHhc-----------------ccC---hhhHHHHHHHHHHhCCC----ccHHHHH------------HHHHHHHhcCCch
Q 041894 115 SCTL-----------------LVD---FRFGESVHACIIRLGVD----LDLYTNN------------ALMNMYAQSQNMD 158 (219)
Q Consensus 115 ~~~~-----------------~g~---~~~a~~~~~~m~~~g~~----~~~~~~~------------~ll~~y~~~g~~~ 158 (219)
+.+. ..+ ...|...++.+++.=.. ++....- .+-+.|-+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 5431 012 34555667776655321 2221111 1225689999997
Q ss_pred hHH
Q 041894 159 MHI 161 (219)
Q Consensus 159 ~~~ 161 (219)
.|+
T Consensus 193 AA~ 195 (243)
T PRK10866 193 AVV 195 (243)
T ss_pred HHH
Confidence 663
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=4.4 Score=37.44 Aligned_cols=142 Identities=10% Similarity=0.001 Sum_probs=92.3
Q ss_pred HHHHHHHH-HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 24 KQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 24 ~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
.+++..+. +.|..-..-+.+--+.-+...|+-++|.++=.+++-| |-..|=-=+.+++..+++++-+++=+.++
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskk---- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKK---- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccC----
Confidence 34444442 2333333334455556667788899999999999888 88888888899999888888665544432
Q ss_pred CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHh
Q 041894 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182 (219)
Q Consensus 103 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~ 182 (219)
+ ..=|-....+|.+.|+.++|...+...... + -.+.+|.+.|++.+|. ..+++..|...-.+++
T Consensus 743 -s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAa-----d~A~~~rd~~~L~ev~ 806 (829)
T KOG2280|consen 743 -S-PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAA-----DLAAEHRDGAELSEVL 806 (829)
T ss_pred -C-CCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHH-----HHHHHhcChHHHHHHH
Confidence 1 445667788999999999998887654111 1 4578888888886653 2223334445555555
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
....
T Consensus 807 ~~~~ 810 (829)
T KOG2280|consen 807 SKCT 810 (829)
T ss_pred HhcC
Confidence 5544
No 227
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.05 E-value=8.4 Score=28.30 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCC---C--CCCcccHHHHHHHHhcccC-hhhHHHHHHHHHHhCCCccHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG---V--YPDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
.-.|+++......+++...+++++.+..-. + ..+..+|.+++++.++... --.+..+|..|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 457888888888889999998888874221 1 3567799999999988877 556778899999988999999999
Q ss_pred HHHHHHHhcCC
Q 041894 146 ALMNMYAQSQN 156 (219)
Q Consensus 146 ~ll~~y~~~g~ 156 (219)
.||.+..+-..
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 99999887533
No 228
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.02 E-value=6 Score=37.33 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=99.9
Q ss_pred CcHHHHHHHHH--HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C--------CCCC
Q 041894 37 NSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G--------VYPD 105 (219)
Q Consensus 37 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~ 105 (219)
-|..|--++|+ .|...|+.+.|.+-.+.+++. ..|..+-+.|.+-.+++-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 46677777776 678899999999998888766 78999999999999999888888888532 2 2443
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--------------HHHhhhhccC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--------------YDRFQGFGFN 171 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--------------~~~~~~~~~~ 171 (219)
...- -+----...|.+++|+.++.+=++.. .|=+.|-..|++++|+ |-.-..++..
T Consensus 801 e~ea-kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEA-KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhh-HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 2221 11122356789999999988766543 3445677778887772 3334456677
Q ss_pred CcchhhHHHHhhcCCCC
Q 041894 172 GGREASVHEVLDKIPER 188 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~ 188 (219)
.+|++.|.++|++-..+
T Consensus 871 r~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVH 887 (1416)
T ss_pred hccHHHHHHHHHhcCCh
Confidence 89999999999986644
No 229
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.99 E-value=5.6 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+-+..+..-.+.|...+..+.|++|.+.+++..|.++++-++.. ..+....|..+|+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33444445567777777888888888888888777777766432 2232336666554
No 230
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=21 Score=31.15 Aligned_cols=170 Identities=11% Similarity=0.011 Sum_probs=98.9
Q ss_pred cccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhh------HHHHHHHHHhcCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA------WKSIIRCCTQNGLL 87 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~li~~~~~~g~~ 87 (219)
+..++...+-..+-.+... -++.|.+....+-+++...|+.++|+..|.+...- |+.+ |..|+ .+.|++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~MD~Ya~LL---~~eg~~ 282 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAMDLYAVLL---GQEGGC 282 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhHHHHHHHH---HhccCH
Confidence 3344555555555544443 36778899999999999999999999999887633 3222 22222 233444
Q ss_pred hHHHHHHHHhHh------------------------------CCCCCCcccHHH-HH--HHHhcccChhhHHHHHHHHHH
Q 041894 88 VESLTCFVRMIG------------------------------SGVYPDHNVFPS-VL--KSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 88 ~~a~~~~~~m~~------------------------------~g~~p~~~t~~~-ll--~~~~~~g~~~~a~~~~~~m~~ 134 (219)
++...+-..+.. ..|..|...-.. +| +.+...++.++|.=.|.....
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 443333333221 112222222221 12 223345667766666666555
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHH------HHHhhhh------------ccCCcchhhHHHHhhcCCCCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHI------YDRFQGF------------GFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~------~~~~~~~------------~~~~g~~~~a~~l~~~m~~~~ 189 (219)
.. +.+..+|.-|++.|.-.|++++|. ++.+.+- ...--.=|+|..++++-.+.+
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 43 357899999999999999999883 3332211 112223388888888766443
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.35 E-value=1.8 Score=23.32 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
|+.|=+.|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666665
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=84.75 E-value=20 Score=32.83 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=33.1
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
...|+.++|......-.+..+ .+.+.|..+=-.+-..+++++|.+.+..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456888888877666655443 3556666666666667788888887764
No 233
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=84.03 E-value=10 Score=25.28 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.++++.+.+.|+- +......+..+-.+.|+.+.|.++++.++ . ..-.|..+++++..-|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-CCcHHHHHHHHHHHcCchhhhh
Confidence 45677888888833 44445555555556788888888888888 6 7788888888888877665543
No 234
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.99 E-value=0.42 Score=34.58 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=18.0
Q ss_pred cchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 173 GREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 173 g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
++++.|.+++.+.. + ...|..++..|...+
T Consensus 110 ~~~~~a~e~~~~~~--~-~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 110 KDYEEAIEYAKKVD--D-PELWEQLLKYCLDSK 139 (143)
T ss_dssp HCSCCCTTTGGGCS--S-SHHHHHHHHHHCTST
T ss_pred ccHHHHHHHHHhcC--c-HHHHHHHHHHHHhcC
Confidence 33366665554443 3 567888888876654
No 235
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.50 E-value=3.8 Score=34.17 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
.+++-..++..-....+++++..++-.++.+ ...|++..+ +++.-|- .-+.+.+..+...=++.|+-||.++.+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 4566677777667678899999998888765 245555433 3344433 3467788888888889999999999999
Q ss_pred HHHHHHhcCCchhH
Q 041894 147 LMNMYAQSQNMDMH 160 (219)
Q Consensus 147 ll~~y~~~g~~~~~ 160 (219)
||+.+.+.++..++
T Consensus 141 l~D~flk~~n~~~a 154 (418)
T KOG4570|consen 141 LMDSFLKKENYKDA 154 (418)
T ss_pred HHHHHHhcccHHHH
Confidence 99999999999765
No 236
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=24 Score=28.66 Aligned_cols=147 Identities=8% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~ 86 (219)
++-+....|+...|...++++.++- |...-...|=. .+-..|+.++|.++++.+-+. -|.++|.-=|-..-..|+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 3444455677788888888876553 32222222222 234568889999999887632 145666654444555566
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.-+|.+-+.+..+. +.-|...|.-+-.-|...|+++.|--.++++.-.. +.+.--+-.+-+.+--.|..++.
T Consensus 136 ~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred cHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 66777777776654 56788889999999999999999988888887654 23444455555555555555444
No 237
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.76 E-value=18 Score=27.24 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
....+.+.+++|....+..++..+.+.|+......++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344455667777777777777777777776666655543
No 238
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=82.57 E-value=21 Score=27.78 Aligned_cols=137 Identities=10% Similarity=-0.014 Sum_probs=99.8
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC---CCCC
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG---VYPD 105 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 105 (219)
...-|+..---.|-.+..+.|+..+|+..|++-- .. |.-..-.+-++....+++-+|...++.+.+.. -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456777777788889999999999999998754 34 77888888899999999999999999976543 3344
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.-.+-..+.-.|...+|+..|+.....-.-|....|-+ ..+++.|+.+++- .+..+++++.
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~--------------aq~~~v~d~~ 223 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREAN--------------AQYVAVVDTA 223 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHH--------------HHHHHHHHHH
Confidence 555667888889999999999999888755555444433 3455666553221 4556667666
Q ss_pred CCC
Q 041894 186 PER 188 (219)
Q Consensus 186 ~~~ 188 (219)
++.
T Consensus 224 ~r~ 226 (251)
T COG4700 224 KRS 226 (251)
T ss_pred Hhc
Confidence 543
No 239
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.53 E-value=12 Score=33.20 Aligned_cols=116 Identities=10% Similarity=0.079 Sum_probs=82.1
Q ss_pred ccCChhHH-HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQA-KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a-~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..|++..| .++|+.+++..-.|+....-+.| +...|+++++...+.... .. ...+--++++...+.|++++|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHH
Confidence 45666665 66888888776677766554444 456788999888876554 34 5678899999999999999999
Q ss_pred HHHHHhHhCCCC-CCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 92 TCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 92 ~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..-..|+.+.|+ |...+..+ -+.-..|.++++...|.++....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa--~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAA--GSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeec--ccHHHHhHHHHHHHHHHHHhccC
Confidence 999888888776 33333322 22334567888888888876543
No 240
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=6.8 Score=34.78 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=72.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-PVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~ 89 (219)
+.+..|+++.|..+|-..+... ++|.+.|+.-..+|.+.|++++|.+==.+-. .| + ...|+-.=.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccHHH
Confidence 4567899999999999988777 5588899999999999999988876544433 23 2 3567777777777889999
Q ss_pred HHHHHHHhHhCCCCC-CcccHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYP-DHNVFPSVLKSC 116 (219)
Q Consensus 90 a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 116 (219)
|..-|.+=++. .| |...++-+.+++
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99888775543 23 334455555555
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.35 E-value=4 Score=22.92 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
+..+-..|.+.|++++|+++|+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555555555544
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.04 E-value=3.7 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
+|..+-..|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776654
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.87 E-value=15 Score=26.84 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
...|+.-..++- .|++++|.+.|+.+... .+.+ ...---++.+|.+.++++.|...++.-++.....-..-|.-.
T Consensus 11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQ-KGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 345666655554 68999999999887755 2333 234556889999999999999999999888876666778888
Q ss_pred HHHHHhcCCc
Q 041894 148 MNMYAQSQNM 157 (219)
Q Consensus 148 l~~y~~~g~~ 157 (219)
+.+++...+.
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 8887765554
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.43 E-value=3.7 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
+|+.|=..|.+.|++++|..++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467777888999999999988876
No 245
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.41 E-value=8.5 Score=26.53 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=12.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
++....+.+.+|.+.+++.-|.++|+.
T Consensus 44 ~P~ii~aALrAcRRvND~a~AVR~lE~ 70 (108)
T PF02284_consen 44 EPKIIEAALRACRRVNDFALAVRILEG 70 (108)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334445555555555555555555533
No 246
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.17 E-value=18 Score=29.76 Aligned_cols=82 Identities=9% Similarity=0.034 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
+-.=|++++..+++++++...-+--+. .++|. +....|--|++.+....+.++-+.-.+..-.-+...|.++.+.|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 344589999999999988766554433 34444 55556667889999998888887776654445566688877666
Q ss_pred H-----hcCCc
Q 041894 152 A-----QSQNM 157 (219)
Q Consensus 152 ~-----~~g~~ 157 (219)
. -.|++
T Consensus 164 Ll~VLlPLG~~ 174 (309)
T PF07163_consen 164 LLHVLLPLGHF 174 (309)
T ss_pred HHHHHhccccH
Confidence 5 47888
No 247
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.11 E-value=11 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..++-++.+....+.|++.+..+.|.+|-|.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.09 E-value=21 Score=26.12 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=63.0
Q ss_pred HHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCc---ccHHHHHHHHhccc
Q 041894 48 IYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDH---NVFPSVLKSCTLLV 120 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~g 120 (219)
+.+..|+++.|++.|.+-- .. ...+||.--+++.-.|+.++|++=+.+-++- |-+ +. ..|.-=-.-|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 5678999999999998753 34 7789999999999999999999888886543 311 21 12222223344567
Q ss_pred ChhhHHHHHHHHHHhC
Q 041894 121 DFRFGESVHACIIRLG 136 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g 136 (219)
+.+.|+.=|+.-.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777766
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=12 Score=29.99 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch---h------HHHHHhhhhccCCcchhhHH
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD---M------HIYDRFQGFGFNGGREASVH 179 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~---~------~~~~~~~~~~~~~g~~~~a~ 179 (219)
....|..|++.|++..|-..+..+.+. ++.+..-+..-|..|-..+++= . .++=....|...+|+.++|.
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888877777666555443 3556666667777777666551 0 02333555666777779999
Q ss_pred HHhhcCC
Q 041894 180 EVLDKIP 186 (219)
Q Consensus 180 ~l~~~m~ 186 (219)
++|++.-
T Consensus 175 ~iyeqva 181 (288)
T KOG1586|consen 175 DIYEQVA 181 (288)
T ss_pred HHHHHHH
Confidence 9998765
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.90 E-value=27 Score=30.09 Aligned_cols=97 Identities=5% Similarity=0.069 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+++.+.-++.+.+++.+|.+.=...+..+ ++|....=-==.+|...|+++.|+..|+.+.+.. +-|...-+-|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3568888889999999999988777766543 3343332233456777789999999999998865 2345555666665
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
--+..... ++..++|..|-
T Consensus 335 ~~k~~~~~-----------------~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYE-----------------EKEKKMYANMF 353 (397)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHh
Confidence 55555442 55677777766
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.87 E-value=4.2 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777777777777777754
No 252
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=79.32 E-value=22 Score=34.36 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=11.7
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHH
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
..|..+..+|..+|....|..+|..
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhh
Confidence 3444444444444444444444443
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.15 E-value=40 Score=28.93 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=97.2
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhh---cCCHHHHHHHHHh-cC---CCCChhhHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNN---FNLVHDSLCLLDT-LK---TPAPPVAWKS 76 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g---~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~-m~---~~~~~~~~~~ 76 (219)
.-.++-+|-...+++...++.+.|.... +.-...+--..--++.| .|+-++|..++.. +. .+ +..+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHH
Confidence 3455667888889999999999987663 22223332334445556 8899999999877 43 33 5555555
Q ss_pred HHHHHHh---------cCChhHHHHHHHHhHhCCCCCCccc---HHHHHHHHhcccC-hhhHHHHH----HHHHHhCC--
Q 041894 77 IIRCCTQ---------NGLLVESLTCFVRMIGSGVYPDHNV---FPSVLKSCTLLVD-FRFGESVH----ACIIRLGV-- 137 (219)
Q Consensus 77 li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~-~~~a~~~~----~~m~~~g~-- 137 (219)
+-..|-. ...+++|...|.+--+ +.||.++ +.+|+...+..-. -.+.+++. ..+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 4433322 1235666666655322 3355432 4445554443211 11233332 22334442
Q ss_pred -CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeeh
Q 041894 138 -DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVEL 194 (219)
Q Consensus 138 -~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 194 (219)
..|-..+.+++.+..-.|+. ++|.+..++|.... +..|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~------------------~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDY------------------EKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHhhcC-Ccch
Confidence 24566677888888888888 99999888887655 5444
No 254
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=78.18 E-value=37 Score=27.89 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 19 TKSQAKQLHAQIFKTLE----PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
..+.|.+.|......+. ..+...-..++....+.|..+.-..+++......+...-..++.+++...+++...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 36678888888887532 34566667788888888988887788877764316778899999999999999988999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHh
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
+.....+..++.... .++.++.
T Consensus 225 ~~~l~~~~v~~~d~~-~~~~~~~ 246 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIR-YVLAGLA 246 (324)
T ss_dssp HHHHCTSTS-TTTHH-HHHHHHH
T ss_pred HHHcCCcccccHHHH-HHHHHHh
Confidence 887776533444443 4445554
No 255
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=76.75 E-value=32 Score=33.35 Aligned_cols=114 Identities=11% Similarity=-0.013 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---cccHHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD---HNVFPSVLKS 115 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~ 115 (219)
.|+.|=.-|+..-+...|.+-|+..-+- .|..++..+.+.|++..++++|+.+. .......|- ...|.-.=-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhcccc
Confidence 4566666666666788888888765432 26788999999999999999999883 222222221 1122222223
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|-..++..++..=|+.-.+-. +-|...|..|..+|.++|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCce
Confidence 445566666665555544433 34788999999999999999
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.18 E-value=29 Score=25.70 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHhcC--CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHH
Q 041894 51 NFNLVHDSLCLLDTLK--TPA--PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 126 (219)
...+++++..+++.|. .|. ...++...| +...|++.+|.++|++..+.+. ...|...|.++|-...-|-.-
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHH
Confidence 3778888888888776 331 334555544 3567889999998888776542 225566666666443333333
Q ss_pred HHH-HHHHHhCCCcc
Q 041894 127 SVH-ACIIRLGVDLD 140 (219)
Q Consensus 127 ~~~-~~m~~~g~~~~ 140 (219)
+.+ ..+...+-.|+
T Consensus 97 r~~A~~~le~~~~~~ 111 (153)
T TIGR02561 97 HVHADEVLARDADAD 111 (153)
T ss_pred HHHHHHHHHhCCCHh
Confidence 332 22344443444
No 257
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.99 E-value=15 Score=27.16 Aligned_cols=49 Identities=6% Similarity=0.052 Sum_probs=25.3
Q ss_pred cCChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 84 NGLLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.++++++..+++.|+- +.|+ ..+|...| +...|++++|.+++..+.+.+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 4566666666666543 2333 33443333 234566666666666665544
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.67 E-value=32 Score=26.03 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-----PPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
...+..+-..|++.|+.+.|.+.+..+...- -...+-.+|....-.+++..+.........
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3468889999999999999999999987430 135677888888889999999888877654
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.03 E-value=42 Score=31.43 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=55.2
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++=+++++| .-|-=+..+|.+.|+.++|.
T Consensus 692 ~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksP---IGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSP---IGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCC---CCchhHHHHHHhcccHHHHh
Confidence 33444555555555533322 456666666666666666666666655555555 55666666666666666666
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
+++-.. .+.. -...+|.+.|++.+|-++
T Consensus 765 KYiprv-----~~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 765 KYIPRV-----GGLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhhcc-----CChH----HHHHHHHHhccHHHHHHH
Confidence 555332 1111 345566666666555554
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.70 E-value=33 Score=25.66 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHH---hhcCCHHHHHHHHHhcC--CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 41 LISRLLFIY---NNFNLVHDSLCLLDTLK--TPA--PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 41 ~~~~ll~~~---~~~g~~~~A~~~~~~m~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
+.+.||... .+.++.++++.+++.++ .|. ...++..+| +...|++.+|..+|+++.... |.. .|...|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~-p~~kAL 83 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGF-PYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCC-hHHHHH
Confidence 344444433 45667888888888776 341 233444444 456788888888888875542 333 344444
Q ss_pred HHHhcccChhhHHHHH-HHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 114 KSCTLLVDFRFGESVH-ACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
-++|-...-+..-+.+ +++...+-.|+. ..|++.+....+.
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADL 125 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccc
Confidence 4444333333333333 334444433332 3344444444433
No 261
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=29 Score=30.96 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=70.2
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~ 124 (219)
+-+..|+++.|...|-+-. .|+|.+.|+.=..+|.+.|++++|++==. ....+.|++ .-|+-.=.+..-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~--k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDAT--KTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHH--HHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567899999999986643 33388889999999999999988864322 233567876 355555555555678888
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
|...++.=.+.. ..|...++-|.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 888877644432 34667777777777
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=73.51 E-value=47 Score=26.86 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=92.4
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC-ChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA-PPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~~l 77 (219)
-..-|+..+..+ +.|+++.|...|+.+.++- ..| ...+.--++-++-+.++.+.|+..+++.. .|. ....|---
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344566666555 7789999999999987553 222 33455556667888999999988887763 110 22334444
Q ss_pred HHHHHhc-------CChhHHHHHHHHh---Hh----CCCCCCcccHH------------HHHHHHhcccChhhHHHHHHH
Q 041894 78 IRCCTQN-------GLLVESLTCFVRM---IG----SGVYPDHNVFP------------SVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 78 i~~~~~~-------g~~~~a~~~~~~m---~~----~g~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~ 131 (219)
|.+++.- .+...+.+-|..| +. +...||...-- .+-+.|.+.|.+..|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4444432 3444444444444 32 23344432211 244566777888888888888
Q ss_pred HHHhCCCccHHHHH---HHHHHHHhcCCc
Q 041894 132 IIRLGVDLDLYTNN---ALMNMYAQSQNM 157 (219)
Q Consensus 132 m~~~g~~~~~~~~~---~ll~~y~~~g~~ 157 (219)
|.++ .+-...+.. .|..+|-..|..
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCCh
Confidence 8877 444444444 446888888888
No 263
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.46 E-value=39 Score=26.97 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh--CCCccHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL--GVDLDLYTNNALMNM 150 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~ 150 (219)
.+..|+.+.+.+.++++....++=++.+ +-|...=..+++-+|-.|+++.|..=++...+. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444555555566666655555443331 223344455556666666665555443333222 112334445544443
No 264
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=73.00 E-value=42 Score=26.13 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-C-CC--ChhhHHHHHHHHHhc
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-T-PA--PPVAWKSIIRCCTQN 84 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~-~~--~~~~~~~li~~~~~~ 84 (219)
.+-.+....|+..+|+..|++....-+--|....-.+-.+....+++-.|...++.+- . |. ...+--.+-..+...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 3456778889999999999998876678888888888888899999999999998753 1 10 234455667888889
Q ss_pred CChhHHHHHHHHhHhCCCCCCc--c-cHHHHHHHHhcccChhhHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDH--N-VFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~--~-t~~~ll~~~~~~g~~~~a~~ 127 (219)
|.+.+|..-|+..... -|+. . -|.-++ .+.|..+++..
T Consensus 174 g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~L---a~qgr~~ea~a 214 (251)
T COG4700 174 GKYADAESAFEVAISY--YPGPQARIYYAEML---AKQGRLREANA 214 (251)
T ss_pred CCchhHHHHHHHHHHh--CCCHHHHHHHHHHH---HHhcchhHHHH
Confidence 9999999999887664 3443 2 333333 44555554443
No 265
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.95 E-value=20 Score=27.26 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTLK-----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
...+.......+.+......+..+ .| +..+|..++..+...|+.++|.+...++..-
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333345555544444433332 56 7888888888899999999998888887653
No 266
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.67 E-value=30 Score=24.18 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+.+.+.+.+- -...+--+-+..+.+.|++++|...=.....| |...|-+|- -.+.|-.+++...+..+-
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~p-dL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYP-DLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--G-GGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCc-cHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 45666777777666653 22223333444566677777773333334456 666665553 345566666666666555
Q ss_pred hCC
Q 041894 99 GSG 101 (219)
Q Consensus 99 ~~g 101 (219)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 544
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.65 E-value=10 Score=19.54 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+|..+-.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666677777777777777766543
No 268
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.24 E-value=11 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=14.7
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
.|-.+++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344445555555555555544444444443
No 269
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.92 E-value=11 Score=21.59 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=17.3
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhC
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+-.+|...|+.+.|+.+++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3466777777777777777776544
No 270
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.77 E-value=67 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=9.1
Q ss_pred CCcchhhHHHHhhcCCC
Q 041894 171 NGGREASVHEVLDKIPE 187 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~~ 187 (219)
..|..+-+.-+++.-..
T Consensus 177 ~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 177 AKGDIAICKMLLDSGAN 193 (413)
T ss_pred HcCCHHHHHHHHhCCCC
Confidence 34444666666665443
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.52 E-value=56 Score=26.47 Aligned_cols=82 Identities=17% Similarity=0.343 Sum_probs=54.1
Q ss_pred hhcCCHHHHHHHHHhc----------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 50 NNFNLVHDSLCLLDTL----------------KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m----------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
...|+..+|..-++.- .+| .+.....++++|.+ +++++|+++++++-+.|+.|.. ..++++
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~P-hP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEP-HPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCC-ChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 4456666666555432 255 66777888888875 6899999999999899988864 455666
Q ss_pred HHHhcccChhhHHHH-HHHHHHhCC
Q 041894 114 KSCTLLVDFRFGESV-HACIIRLGV 137 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~-~~~m~~~g~ 137 (219)
+.+-. .+-++.+ ++.+++-|+
T Consensus 280 Rv~K~---~~~~E~~rlE~ikeig~ 301 (333)
T KOG0991|consen 280 RVVKN---MDVAESLRLEFIKEIGL 301 (333)
T ss_pred HHHHh---ccHHHHHHHHHHHHHhh
Confidence 66643 3345555 455555554
No 272
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.46 E-value=68 Score=27.42 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=87.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCChhH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV--AWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~li~~~~~~g~~~~ 89 (219)
.++.|+.+.+.. +.+.|..|+... -.+.|...++.|+.+-+..+++.=..+ +.. ...+.+......|+.+.
T Consensus 9 A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 9 AILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHH
Confidence 345566655444 456687665533 345556666788887666555532222 211 12234555566788876
Q ss_pred HHHHHHHhHhCCCCC----CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCchhHHHH
Q 041894 90 SLTCFVRMIGSGVYP----DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 90 a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~~~~~~~ 163 (219)
+..+++ .|..+ +..-.+. +...+..|.. ++.+.+.+.|..|+... ..+.+..-++.|+.
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~------ 148 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI------ 148 (413)
T ss_pred HHHHHH----cCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH------
Confidence 554443 33211 1112233 3444455665 45555667777765432 23445566667777
Q ss_pred HhhhhccCCcchhhHHHHhhcCCC---CCCeeehhHHHHHHhhhh----HhHHHcCCCCCC
Q 041894 164 RFQGFGFNGGREASVHEVLDKIPE---RNGNVELSSGLAGCNKFE----KRVVSAGHDADL 217 (219)
Q Consensus 164 ~~~~~~~~~g~~~~a~~l~~~m~~---~~~~~~~n~ll~~~~~~~----~~m~~~g~~pd~ 217 (219)
+-+.-+++.-.. ++ ..-++.+..|..... +.+.+.|..|+.
T Consensus 149 ------------~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 149 ------------KGIELLIDHKACLDIED-CCGCTPLIIAMAKGDIAICKMLLDSGANIDY 196 (413)
T ss_pred ------------HHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc
Confidence 777777664332 23 333444444432221 345566666653
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.42 E-value=9.2 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDS 58 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A 58 (219)
+...|+.+=..|...|+.++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444455555555555555544
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=70.19 E-value=62 Score=26.83 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=8.8
Q ss_pred hhHHHHhhcCCCCC
Q 041894 176 ASVHEVLDKIPERN 189 (219)
Q Consensus 176 ~~a~~l~~~m~~~~ 189 (219)
.++.++++.+++.+
T Consensus 199 ~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 199 ARVIELYNALKKNG 212 (297)
T ss_pred HHHHHHHHHHHHcC
Confidence 56667777666543
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.72 E-value=35 Score=26.58 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCcccHHHHHHHHh
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLKTPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~ 117 (219)
.+.-.+.+.|+- .|.+.|-.++..+ ++..--+|-.-|. ..+++++..++.+.++- +=.+|...+.+|.+.+-
T Consensus 112 llYy~Wsr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 112 LLYYHWSRFGDQ-EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HHHHHhhccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445567777764 5666666665321 3344444555555 67999999999887642 33788889999999999
Q ss_pred cccChhhHH
Q 041894 118 LLVDFRFGE 126 (219)
Q Consensus 118 ~~g~~~~a~ 126 (219)
+.|+.+.|.
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 999998774
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=64 Score=26.76 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=24.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..+++..+..+|+...+..-. +...--.+..+|...|+++.|..+++.++
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 445555555555555444322 23333444555555555555555555554
No 277
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=69.00 E-value=27 Score=22.99 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
...+++.+.+.|+- +......+ -+...+.+.|.++++.++.+ +..+|.++.+++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e~I---~~~~tr~~q~~~LLd~L~~R-G~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIEEI---QAAGSRRDQARQLLIDLETR-GKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHH---HcCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCchHHH
Confidence 34577888888743 22222222 23456688899999999988 889999999999888876554
No 278
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.21 E-value=11 Score=21.83 Aligned_cols=36 Identities=19% Similarity=-0.026 Sum_probs=29.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI 48 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~ 48 (219)
...+.|-.+++..+++.|.+.|+--+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345778888999999999999988888888877753
No 279
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.04 E-value=10 Score=18.63 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=7.0
Q ss_pred HHHHhcCChhHHHHHH
Q 041894 79 RCCTQNGLLVESLTCF 94 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~ 94 (219)
..+...|++++|..++
T Consensus 9 ~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 9 RALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3444444444444443
No 280
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=67.86 E-value=31 Score=26.55 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHHhc
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK--TPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSCTL 118 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~ 118 (219)
-..+...|++++|...|+.+. .|. -..+.-.+..++.+.|++++|...|+++.+. -|+. .-+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 345667899999999999886 231 1345667788999999999999999998764 3443 234444444432
Q ss_pred ccChhhHHHHHHHHHHhCCCcc-------HHHHHHHHHHHHhcCCchhHH------HHH-------hhhhccCCcchhhH
Q 041894 119 LVDFRFGESVHACIIRLGVDLD-------LYTNNALMNMYAQSQNMDMHI------YDR-------FQGFGFNGGREASV 178 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~y~~~g~~~~~~------~~~-------~~~~~~~~g~~~~a 178 (219)
-...+... ....| ...+..+|.-|=.+...+++- -+. +..|..+.|....|
T Consensus 90 ~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 22222111 11222 446777777777777776552 111 55667788888888
Q ss_pred HHHhhcCCCC--CCe----eehhHHHHHHhhhhH
Q 041894 179 HEVLDKIPER--NGN----VELSSGLAGCNKFEK 206 (219)
Q Consensus 179 ~~l~~~m~~~--~~~----~~~n~ll~~~~~~~~ 206 (219)
..-|+.+.+. + + ...-.++.+|-+.|.
T Consensus 161 ~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 161 IIRFQYVIENYPD-TPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCC
Confidence 8888877643 3 2 124456666666664
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.01 E-value=1.4e+02 Score=29.72 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHhcCChhHHHHHHHHhHhC-----CCCCCc--ccHHHHHHHHhccc--ChhhHHHHHHHHHHhC--------CCccHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGS-----GVYPDH--NVFPSVLKSCTLLV--DFRFGESVHACIIRLG--------VDLDLY 142 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~-----g~~p~~--~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~g--------~~~~~~ 142 (219)
+-....++.+=+-+++++.+. .++.|. .-|...|......| -+++.+.+ +++.| ..|+..
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKPDSE 936 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheeccCHH
Confidence 334445666666666655421 122222 13444555555555 34444333 22222 246666
Q ss_pred HHHHHHHHHHh----cCCchhH--HHHH-------hhhhccCCcchhhHHHHhhcCCCC-CCe-eehhHHHHHHhhhhHh
Q 041894 143 TNNALMNMYAQ----SQNMDMH--IYDR-------FQGFGFNGGREASVHEVLDKIPER-NGN-VELSSGLAGCNKFEKR 207 (219)
Q Consensus 143 ~~~~ll~~y~~----~g~~~~~--~~~~-------~~~~~~~~g~~~~a~~l~~~m~~~-~~~-~~~n~ll~~~~~~~~~ 207 (219)
.+.-...+|+. .+.+++| .|.+ +.+|. .+|+|.+|..+...+... +.. .+=-.|+.-+...++.
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~-~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYK-ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHH-HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccc
Confidence 66666655553 4455444 2332 22222 466777777777766543 201 1123455555555544
Q ss_pred HHH
Q 041894 208 VVS 210 (219)
Q Consensus 208 m~~ 210 (219)
+.+
T Consensus 1016 ~eA 1018 (1265)
T KOG1920|consen 1016 YEA 1018 (1265)
T ss_pred hhH
Confidence 443
No 282
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=67.01 E-value=1.1e+02 Score=28.72 Aligned_cols=127 Identities=8% Similarity=-0.038 Sum_probs=88.3
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g 85 (219)
...-..+.+.+..+++.--..+..+. .+-....|...=..+-..|..++|...|..-- .|.++..-.++-..+.+.|
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 33444555666666665222222221 13345556555567777889999999987653 5535678888999999999
Q ss_pred ChhHHHH--HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 86 LLVESLT--CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 86 ~~~~a~~--~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+..-|.. ++.++.+-+ +-+...|--+=..+-+.|+.++|-..|..-.+..
T Consensus 733 ~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9888888 888887754 3356678888888899999999999988765543
No 283
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=66.61 E-value=43 Score=28.08 Aligned_cols=82 Identities=10% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHhcCChhHHHHHHHH-hHhCCCCCCc----ccHHHHHHHHhcccChh-hHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 81 CTQNGLLVESLTCFVR-MIGSGVYPDH----NVFPSVLKSCTLLVDFR-FGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~-m~~~g~~p~~----~t~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
..+...+++......+ |.++.+ |+. ..|+.+|++---+..-+ .|.+++. ...+|.-|+.++|..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcC
Confidence 3333445555554444 666654 443 46888887765443221 2233332 245889999999999
Q ss_pred CCchhHHHHHhhhhccCC
Q 041894 155 QNMDMHIYDRFQGFGFNG 172 (219)
Q Consensus 155 g~~~~~~~~~~~~~~~~~ 172 (219)
|+.+....-.+++||+.+
T Consensus 335 g~sEL~Ll~KvQe~CYen 352 (412)
T KOG2297|consen 335 GQSELELLLKVQEYCYEN 352 (412)
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 999888666677777643
No 284
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=66.27 E-value=47 Score=27.87 Aligned_cols=55 Identities=9% Similarity=-0.026 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh
Q 041894 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 58 A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 123 (219)
|.++|...... ...|.+|+.+.+.+.-+.-.++ ++||..|-...-..+...|.-+
T Consensus 186 ~~~lFk~~~~E---k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~e 240 (412)
T KOG2297|consen 186 AVKLFKEWLVE---KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKE 240 (412)
T ss_pred HHHHHHHHHhh---ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHH
Confidence 55566554322 3356777777765544443333 4788877777777777666433
No 285
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=65.97 E-value=31 Score=22.11 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc---cHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN---VFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~ 124 (219)
..++.|+++-...+++.-... +. -+..+...+..|+.+ +++.+.+.|..|+.. -++.+.- .+..|..
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~-~~--~~~~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~-- 72 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADI-NL--GNTALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHY-AAENGNL-- 72 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTT-TS--SSBHHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH--
T ss_pred HHHHcCCHHHHHHHHHCcCCC-CC--CCCHHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHH-HHHcCCH--
Confidence 345666666666666622222 22 122444444556543 444555566666543 3344433 3344444
Q ss_pred HHHHHHHHHHhCCCcc
Q 041894 125 GESVHACIIRLGVDLD 140 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~ 140 (219)
++.+.+.+.|..++
T Consensus 73 --~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 --EIVKLLLEHGADVN 86 (89)
T ss_dssp --HHHHHHHHTTT-TT
T ss_pred --HHHHHHHHcCCCCC
Confidence 34555556666555
No 286
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.52 E-value=26 Score=32.45 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=53.5
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCCH------HHHHHHHHhcCCCCChhhHHHHHH
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTL--EPNSRFLISRLLFIYNNFNLV------HDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
.+++.+|...|++.++.+++....... -+.-...+|..|....+.|.+ +.|.+.+++-.-.+|..||..|++
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 488999999999999999988887543 333445688888888888875 455566665543336777777665
Q ss_pred HHH
Q 041894 80 CCT 82 (219)
Q Consensus 80 ~~~ 82 (219)
+-.
T Consensus 112 ~sl 114 (1117)
T COG5108 112 ASL 114 (1117)
T ss_pred hhc
Confidence 543
No 287
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.45 E-value=45 Score=23.07 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
.-|..|+.-|...|.+++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5689999999999999999999998876
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.24 E-value=74 Score=28.05 Aligned_cols=112 Identities=9% Similarity=-0.120 Sum_probs=76.8
Q ss_pred HHHHHhCccccCChhHHHHH-------HHHHHHcC----------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 041894 7 LINLLKNPVSIKTKSQAKQL-------HAQIFKTL----------EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA 69 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l-------~~~m~~~g----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 69 (219)
.+.+++-+-+.|..+.|.++ |+..++.| -.++...|..|=+...+.|+++-|++.|....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--- 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--- 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---
Confidence 55666666677776666654 44444444 23578899999999999999999999999653
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 130 (219)
-|..|+--|...|+.+.-.++-+.-...| -++..+.++-..|+.++..+++.
T Consensus 375 ---d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 375 ---DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 36677777888888877666665544444 36777777777888886666643
No 289
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=64.16 E-value=64 Score=24.78 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=85.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC-ChhhHHHHHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA-PPVAWKSIIRCC 81 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~~li~~~ 81 (219)
|.... .+.+.|++..|...|+.+.+..- +--....-.+..++.+.|+.+.|...++.+. .|. ....+--.+.+.
T Consensus 9 Y~~a~-~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 9 YQKAL-EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHH-HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33333 34478999999999999987631 1122345567778999999999999998864 231 112233222222
Q ss_pred Hh-------------cCChhHHHHHHHHhHhCCCCCCcccHH------------------HHHHHHhcccChhhHHHHHH
Q 041894 82 TQ-------------NGLLVESLTCFVRMIGSGVYPDHNVFP------------------SVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 82 ~~-------------~g~~~~a~~~~~~m~~~g~~p~~~t~~------------------~ll~~~~~~g~~~~a~~~~~ 130 (219)
+. .+...+|...|+.+.+. -|+..--. .+-+-|-+.|.+..|..-++
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 21 12345677777777654 24432111 13455667788888888888
Q ss_pred HHHHhCCCc--cHHHHHHHHHHHHhcCCc
Q 041894 131 CIIRLGVDL--DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 131 ~m~~~g~~~--~~~~~~~ll~~y~~~g~~ 157 (219)
.+++.=... .....-.|+.+|-+.|..
T Consensus 166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 166 YVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 877763211 223446667888888877
No 290
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.08 E-value=39 Score=24.38 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 94 FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+.....-.+.|+.......|.+|-+.+|+..|.++++-++.. ..+...+|-.+++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 344445568899999999999999999999999999877532 3344445665553
No 291
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=63.47 E-value=41 Score=22.37 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
++|+.....|+..|..+|..++....-+=.++....++..|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 688988899999999999999998888888888888888886
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=62.65 E-value=37 Score=30.28 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=53.5
Q ss_pred HHHHHhcccChhhHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC--
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRL-GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER-- 188 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~-- 188 (219)
+-.++-+.|..++|.+.+.+|.+. ....+.-+...||.++...+.. .++..++.+=.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y------------------ad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY------------------ADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH------------------HHHHHHHHHhccccC
Confidence 344445779999999998888654 3334667888899999999999 8888888764421
Q ss_pred --CCeeehhHHHHHHhhhh
Q 041894 189 --NGNVELSSGLAGCNKFE 205 (219)
Q Consensus 189 --~~~~~~n~ll~~~~~~~ 205 (219)
...+.|++.+-.+-..+
T Consensus 327 pkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVG 345 (539)
T ss_pred CchHHHHHHHHHHHHHhhc
Confidence 11467888776554443
No 293
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.55 E-value=9.5 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI 48 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~ 48 (219)
-+.|.-.+|..+|..|+++|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3457778899999999999999886 4777654
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.36 E-value=1.1e+02 Score=26.78 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
-.++.+.|++..+-.+++.+-+....|+. +++-.++|.|+.
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdt 310 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDT 310 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCc
Confidence 45667778888888888888887766664 334456677765
No 295
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=61.85 E-value=17 Score=23.10 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=15.4
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
|+.+.+.+++++..+.|+.|.......+..+..+
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4555555555555544444444444334444433
No 296
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.10 E-value=15 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 55 VHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 55 ~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
++...++.+.++ .. |-.---.+|.+|...|++++|.++..++.+
T Consensus 6 ~~~~~~~~~~lR~~RH-D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRH-DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443 22 334444577888888888888887777653
No 297
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.80 E-value=26 Score=26.69 Aligned_cols=20 Identities=10% Similarity=-0.160 Sum_probs=11.9
Q ss_pred CccHHHHHHHHHHHHhcCCc
Q 041894 138 DLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 138 ~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|+..+|..++.++...|+.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~ 160 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDP 160 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCH
Confidence 45555666666666666666
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.72 E-value=87 Score=28.86 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=63.5
Q ss_pred hcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHH
Q 041894 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 130 (219)
+.|+++.|.++-.+.. +..-|..|=++..++|++..|.+.|..-+ -|..|+-.+...|+.+.-..+-+
T Consensus 649 ~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHH
Confidence 4455555554444332 44678888888888888888888876533 45677777777777765555544
Q ss_pred HHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 131 CIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 131 ~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
.-.+.| . .|.-.-+|-..|++ +++.+++.+-
T Consensus 717 ~~~~~g-~-----~N~AF~~~~l~g~~------------------~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-K-----NNLAFLAYFLSGDY------------------EECLELLIST 747 (794)
T ss_pred HHHhhc-c-----cchHHHHHHHcCCH------------------HHHHHHHHhc
Confidence 455555 2 23334456667777 8888888764
No 299
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.43 E-value=1.4e+02 Score=28.91 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCC---CCh---hhHHHHHHHHHhcCCh--hHHHHHHHHhHhCCCCCCcccHHH-
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTP---APP---VAWKSIIRCCTQNGLL--VESLTCFVRMIGSGVYPDHNVFPS- 111 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~---~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~- 111 (219)
-|..|+..|...|.+++|+++|.+.... .|. .-+--+|+-+.+.+.. +-.+++-+-.....-.-....|+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4899999999999999999999988632 011 2233355555555554 444444433332211111122222
Q ss_pred -----------HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 112 -----------VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 112 -----------ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
-+-.|......+.+...++.+....-.++..-.++++..|++.=+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~ 641 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVL 641 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHh
Confidence 233445566777788888888776667788899999999986443
No 300
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=73 Score=27.04 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcC-------CCCChhhHH--HHHHHHHhcCChhHHHHHHHHhHh-----CCCCCCcc-c
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLK-------TPAPPVAWK--SIIRCCTQNGLLVESLTCFVRMIG-----SGVYPDHN-V 108 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~-t 108 (219)
.++...-+.++.++|.++++++. +| +.+.|. .+..++...|++.++.+.+++..+ .+++|+.. .
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555678999999988875 56 766654 455777778999999999999877 68888653 4
Q ss_pred HHHHH-HHHhcccChhhH
Q 041894 109 FPSVL-KSCTLLVDFRFG 125 (219)
Q Consensus 109 ~~~ll-~~~~~~g~~~~a 125 (219)
|..+= ..|-..|++...
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 44443 344455665533
No 301
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.05 E-value=21 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhcCChhHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~ 92 (219)
.+...++++|+.-|++++++.
T Consensus 44 ~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 44 RVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444443
No 302
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.98 E-value=54 Score=21.89 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhh
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKF 204 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~ 204 (219)
..++++.+.+.|+-.+ .-.+-+-.+--..|+. +.|+++++.+. +. ..-|..+++++-+.
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~------------------~~ar~LL~~L~-rg-~~aF~~Fl~aLreT 79 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIEAATENHGNE------------------SGARELLKRIV-QK-EGWFSKFLQALRET 79 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhccccCcH------------------HHHHHHHHHhc-cC-CcHHHHHHHHHHHc
Confidence 4456666666664322 2223222222345666 99999999999 77 88999999999888
Q ss_pred hHhHHH
Q 041894 205 EKRVVS 210 (219)
Q Consensus 205 ~~~m~~ 210 (219)
|....+
T Consensus 80 ~~~~LA 85 (88)
T cd08819 80 EHHELA 85 (88)
T ss_pred Cchhhh
Confidence 864443
No 303
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=57.43 E-value=39 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=10.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcC
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
.+|..|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 33444444455555555555544
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.94 E-value=1.9e+02 Score=27.80 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=94.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHH----cC------------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFK----TL------------EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~----~g------------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 68 (219)
...+.+++++...+.+-.-.-+++...+ .+ .+...-....-|+..++...++-|..+-+.-..
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~- 362 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL- 362 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC-
Confidence 4557777888777776555444444432 22 111223455667777888888888877765543
Q ss_pred CChhhHHHHH----HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 69 APPVAWKSII----RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 69 ~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
|..+--.+. +-+.+.|++++|..-|-+=... ++|. .+|.-|-++..+..-..+++.+.+.|+. +...-
T Consensus 363 -d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 363 -DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 222222333 3445679999998888664322 4454 4667777777777777888889999964 45566
Q ss_pred HHHHHHHHhcCCc
Q 041894 145 NALMNMYAQSQNM 157 (219)
Q Consensus 145 ~~ll~~y~~~g~~ 157 (219)
+.||.+|.+.++.
T Consensus 435 tlLLncYiKlkd~ 447 (933)
T KOG2114|consen 435 TLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHHHHHhcch
Confidence 7889999999999
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.30 E-value=84 Score=28.39 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCC-C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPA-P---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
..-|+.-|.+.+++++|..++..|.-.- . -...+.+.+.+.+..--++....++....+-..|..-.-.+...-|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 3567789999999999999999997310 1 23455566666665444555666666666555554433333333343
Q ss_pred cccChhhHHHHHHHHHHhC
Q 041894 118 LLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g 136 (219)
. -=.+.|++.|..|.+++
T Consensus 491 d-~V~~~aRRfFhhLLR~~ 508 (545)
T PF11768_consen 491 D-PVSDLARRFFHHLLRYQ 508 (545)
T ss_pred H-HHHHHHHHHHHHHHHhh
Confidence 2 22334666666665544
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=55.58 E-value=14 Score=18.51 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=12.5
Q ss_pred HHHHhcCChhHHHHHHHHhHh
Q 041894 79 RCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~ 99 (219)
.++.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 344555666666666666554
No 307
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.11 E-value=18 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPS 111 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 111 (219)
-||..|..-.+.|++++|+++++|-.+.|+.--..||-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367777777777777777777777777776544444433
No 308
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=54.94 E-value=61 Score=21.58 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
...+++.+.+.|+- +...+..+- +..-+.+.+.++++.++.. +..+|.++.+++...|...-
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I~---~~~t~~~k~~~Lld~L~~R-G~~AF~~F~~aL~~~~~~~L 83 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESIM---AKPTSFSQNVALLNLLPKR-GPRAFSAFCEALRETSQEHL 83 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHH---cCCCcHHHHHHHHHHHHHh-ChhHHHHHHHHHHhcChHHH
Confidence 44577888888744 222233332 2445678899999999988 88999999999977665443
No 309
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=54.67 E-value=54 Score=20.91 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=4.8
Q ss_pred HHHHHHhCCCcc
Q 041894 129 HACIIRLGVDLD 140 (219)
Q Consensus 129 ~~~m~~~g~~~~ 140 (219)
++.+.+.|..++
T Consensus 42 ~~~Ll~~g~~~~ 53 (89)
T PF12796_consen 42 VKLLLENGADIN 53 (89)
T ss_dssp HHHHHHTTTCTT
T ss_pred HHHHHHhccccc
Confidence 333334444443
No 310
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=54.25 E-value=78 Score=28.35 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=61.5
Q ss_pred CccccCChhHHHHHHHHHHHcC---CCCc---------------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTL---EPNS---------------------RFLISRLLFIYNNFNLVHDSLCLLDTLK-- 66 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g---~~~~---------------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~-- 66 (219)
+--.+....+++++|.+..+.| +..+ .++-..+-.+.-+.|+.++|.+.|.+|-
T Consensus 209 AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke 288 (539)
T PF04184_consen 209 AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE 288 (539)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 3344566788888888776654 1111 1122233344456788899988888774
Q ss_pred CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHH
Q 041894 67 TPA--PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKS 115 (219)
Q Consensus 67 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~ 115 (219)
.|. +.-..-.||.++...+.+.++..++..--+. .-|.. ..|+..+--
T Consensus 289 ~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 289 FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAALLK 340 (539)
T ss_pred CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHHHH
Confidence 231 2235666888888888898888888775322 23433 356665533
No 311
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=54.03 E-value=62 Score=21.42 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
+..+++.|.+.|+- +..-+..+- .+....++|..+++.++.+ +..+|.++.+++-..|...-|
T Consensus 16 v~~ild~L~~~gvl-t~~~~e~I~---~~~t~~~qa~~Lld~L~tr-G~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVL-TLDEEEKVK---SKATQKEKAVMLINMILTK-DNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHH---cCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCChHHH
Confidence 45688888888843 333333333 2556689999999999988 889999999999887766655
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.70 E-value=1.1e+02 Score=23.98 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh---CCCccHHHHHHHHHHHHhcCCc
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL---GVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..+.| =++|.+.|-++...+.--+......|-..|. ..+.+.+.+++-...+. +-.+|...+.+|...|-+.|++
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 4678888888887775545545555555554 67888888886665433 2357899999999999999999
Q ss_pred hhH
Q 041894 158 DMH 160 (219)
Q Consensus 158 ~~~ 160 (219)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 433
No 313
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=53.35 E-value=87 Score=29.18 Aligned_cols=88 Identities=10% Similarity=-0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-----------cHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-----------VFP 110 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----------t~~ 110 (219)
.-.+-.-+-+...+.-|-++|..|... .++++-....+++++|+.+-+...+ +.||.+ -|.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHH
Confidence 333333344555677788888877532 3456667778888888877766543 344432 245
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
-.=++|.++|+-.+|.++++++-.+.+
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 566788888999999988888765543
No 314
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.25 E-value=1.3e+02 Score=24.98 Aligned_cols=112 Identities=8% Similarity=-0.066 Sum_probs=72.3
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 124 (219)
......|+..+|...|+... .|.+...--.+..+|...|+.+.|..++..+...--........+-|.-..+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 45677899999999998764 2215566778899999999999999999988654322222333344555666666666
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
..++.+..-... -|...--.|-..|.-.|+.+.+
T Consensus 222 ~~~l~~~~aadP--dd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 222 IQDLQRRLAADP--DDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 666655554321 1444444455666666777555
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=52.20 E-value=86 Score=22.54 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=94.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH-H
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR-C 80 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~-~ 80 (219)
..+......+...+.+..+...+...... ........+..+-..+...++.+.+...+..... +.+.......-. .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34445555666667777777777766653 3344555666677777777778888888876653 202122333333 6
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC----CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP----DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+...|+++.|...|.+... ..| ....+......+...++.+.+...+..............+..+-..+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 7788888888888888744 333 2223333334455677888888888777665422246677777777777777
Q ss_pred c
Q 041894 157 M 157 (219)
Q Consensus 157 ~ 157 (219)
+
T Consensus 218 ~ 218 (291)
T COG0457 218 Y 218 (291)
T ss_pred H
Confidence 7
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.00 E-value=1.3e+02 Score=24.44 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHH--HHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQI--FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m--~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~ 79 (219)
.++..+..++-..+..+...+....+ .+..+.-...++-.-|..+.+.++.+.+.+++..|. .- ....+..+++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Q ss_pred HH--HhcCChhHHHHHHHHhHhCCCCCCcc-------cHHHHHHHH----hcccChhhHHHHHHHHHH-hCCCccHHHHH
Q 041894 80 CC--TQNGLLVESLTCFVRMIGSGVYPDHN-------VFPSVLKSC----TLLVDFRFGESVHACIIR-LGVDLDLYTNN 145 (219)
Q Consensus 80 ~~--~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~----~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~ 145 (219)
.+ .....+..|...++.+....+.|... ..-.++..- .....++....+++.+.+ .+-+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
++...+=+.|.- .++.++.+.|.+.|+
T Consensus 244 a~~~LLW~~~~~-----------~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 244 AIHTLLWNKGKK-----------HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHH-----------HHhhcCHHHHHHHHH
No 317
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=51.94 E-value=1.3e+02 Score=24.42 Aligned_cols=157 Identities=12% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCcccHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSV 112 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l 112 (219)
...|+..+.. .+.|++++|.+.|+.+. .|. ...+--.++.++-+.+++++|....++..+. +-.||. -|..-
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 3445555443 35677777777777775 221 2344555667777777777777777775543 344443 44555
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCcc---HHHHHHHHHHHHhcCCchhHH------------HHH-hhhhccCCcchh
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLD---LYTNNALMNMYAQSQNMDMHI------------YDR-FQGFGFNGGREA 176 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~y~~~g~~~~~~------------~~~-~~~~~~~~g~~~ 176 (219)
|.+.+.--.++.. .+...+. ...+..+|.-|=.+.=..+|. +++ |..|+.+.|...
T Consensus 113 lkgLs~~~~i~~~--------~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 113 LKGLSYFFQIDDV--------TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred HHHHHHhccCCcc--------ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 5555521111110 1111111 122233333333333222331 111 455566788888
Q ss_pred hHHHHhhcCCCCC--Ce---eehhHHHHHHhhhh
Q 041894 177 SVHEVLDKIPERN--GN---VELSSGLAGCNKFE 205 (219)
Q Consensus 177 ~a~~l~~~m~~~~--~~---~~~n~ll~~~~~~~ 205 (219)
.|..-+++|.+.- -. ...-.|..+|-+.|
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 8888888777541 01 12444566665555
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.81 E-value=81 Score=25.24 Aligned_cols=89 Identities=6% Similarity=-0.010 Sum_probs=58.4
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc---
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK--- 184 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~--- 184 (219)
|...-++.+.+.+.+.++......-++.. +.|.-.=..|++.||-.|++ ++|..=++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw------------------~kAl~Ql~l~a~ 63 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDW------------------EKALAQLNLAAT 63 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchH------------------HHHHHHHHHHhh
Confidence 45566778888899999999987777765 34666677789999999999 777654443
Q ss_pred CCC---CCCeeehhHHHHHHhhhhHhHHHcCCCCCC
Q 041894 185 IPE---RNGNVELSSGLAGCNKFEKRVVSAGHDADL 217 (219)
Q Consensus 185 m~~---~~~~~~~n~ll~~~~~~~~~m~~~g~~pd~ 217 (219)
|.- +. +.+|..+|.. -..+++.-+-|..|++
T Consensus 64 l~p~~t~~-a~lyr~lir~-ea~R~evfag~~~Pgf 97 (273)
T COG4455 64 LSPQDTVG-ASLYRHLIRC-EAARNEVFAGGAVPGF 97 (273)
T ss_pred cCcccchH-HHHHHHHHHH-HHHHHHHhccCCCCCC
Confidence 331 12 3456666664 2333344444555553
No 319
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.54 E-value=86 Score=25.76 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=56.3
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
.+-+..++......+..++ ....-...|+.+...|++..|+++..+..+.- . ...-|+. ++... ..+++-..
T Consensus 107 ~~rkr~~l~~ll~~L~~i~---~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c-~~~L~--~~L~e~~~ 178 (291)
T PF10475_consen 107 LQRKRQNLKKLLEKLEQIK---TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSC-VRHLS--SQLQETLE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchH-HHHHh--HHHHHHHH
Confidence 3333344444444444442 33445567778888999999999998876431 0 1111111 11111 12222222
Q ss_pred HHHHHHHh-----CCCccHHHHHHHHHHHHhcCCchhH
Q 041894 128 VHACIIRL-----GVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 128 ~~~~m~~~-----g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
..+.+... -..-|...|..++.+|.-.|+.+.+
T Consensus 179 ~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 179 LIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHH
Confidence 22222211 1145677999999999999988554
No 320
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.52 E-value=29 Score=23.88 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHH
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVH 56 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 56 (219)
++..+...+..-.|.++++.+.+.+...+..|....|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444445566677777888777776667777666677777666443
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.51 E-value=1.3e+02 Score=28.69 Aligned_cols=82 Identities=10% Similarity=0.006 Sum_probs=51.5
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV--AWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~li~~~~~~g~~ 87 (219)
+|.-|-.......-..+++.+.+.|+. +...-+.||.+|.+.+++++-.++.+... . ... -.-..+.-+.+.+-+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDVETALEILRKSNYL 479 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeHHHHHHHHHHhChH
Confidence 344444444455555566667777755 34445788889999998888888877665 2 221 245566666666666
Q ss_pred hHHHHHH
Q 041894 88 VESLTCF 94 (219)
Q Consensus 88 ~~a~~~~ 94 (219)
++|..+=
T Consensus 480 ~~a~~LA 486 (933)
T KOG2114|consen 480 DEAELLA 486 (933)
T ss_pred HHHHHHH
Confidence 6665443
No 322
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.40 E-value=63 Score=28.63 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVD--LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...|+.-|-..|++.+|.+...++ |++ ....++.+++.+.-+.|+- +...+++++.-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~------------------t~~ldLLk~cf 570 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDS------------------TMILDLLKECF 570 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcH------------------HHHHHHHHHHH
Confidence 456888888889999988886665 433 4677899999999999987 77777777777
Q ss_pred CCCCeeehhHHHHHHhhhhH
Q 041894 187 ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 187 ~~~~~~~~n~ll~~~~~~~~ 206 (219)
... .+|-|-|=.||.|..+
T Consensus 571 ~sg-lIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 571 KSG-LITTNQMTKGFERVYD 589 (645)
T ss_pred hcC-ceeHHHhhhhhhhhhc
Confidence 777 7888888888877653
No 323
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=50.91 E-value=20 Score=31.69 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc------cChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL------VDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
..|++|..++.++-.+.+. .+=.+|...|-.-+.++ -.|++. .+-+++.++-++-+-.-+.|...+|-
T Consensus 491 sPy~iL~~cl~Rn~g~~d~-~ik~E~i~~~nqkse~i-----m~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twG 564 (650)
T KOG4334|consen 491 SPYNILRDCLSRNLGWNDL-VIKKEMIGNGNQKSEVI-----MILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWG 564 (650)
T ss_pred CHHHHHHHHHHhhcCCcce-eeeeeccCCCCccceeE-----eeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHH
Confidence 4588888888887555421 22234544443333333 334332 45677888876655555789999999
Q ss_pred HHHHHHHhc
Q 041894 146 ALMNMYAQS 154 (219)
Q Consensus 146 ~ll~~y~~~ 154 (219)
+||+.|++.
T Consensus 565 SlLriYGr~ 573 (650)
T KOG4334|consen 565 SLLRIYGRL 573 (650)
T ss_pred HHHHHhhhh
Confidence 999999985
No 324
>PRK14700 recombination factor protein RarA; Provisional
Probab=50.76 E-value=1.4e+02 Score=24.82 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=43.1
Q ss_pred HHHHHHhc---CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC-----hhhHHHHHHHHHHhCC
Q 041894 77 IIRCCTQN---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-----FRFGESVHACIIRLGV 137 (219)
Q Consensus 77 li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~g~ 137 (219)
+|+++.|+ .+++.|+-++..|.+.|.-|....=-.++-++-+.|. +..|...++-....|+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 57777765 6789999999889988887877666667777777774 3344455555556664
No 325
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.62 E-value=1.4e+02 Score=25.84 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
..++..|.-+|.+.+++..|++.=+.. .++ |+...=-==+++...|+++.|...|+.+++ +.|+...-..=|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 445677777888888888877765543 233 554333333566777888888888888776 46776666665555
Q ss_pred Hhcc-cChh-hHHHHHHHHHH
Q 041894 116 CTLL-VDFR-FGESVHACIIR 134 (219)
Q Consensus 116 ~~~~-g~~~-~a~~~~~~m~~ 134 (219)
|.+. .... ....+|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 5433 3333 33566777654
No 326
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=50.23 E-value=22 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=33.8
Q ss_pred cccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..++.+.+.+++++....|..|.....+.+..+.-+-|+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999998889889888888899998888877
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.22 E-value=34 Score=17.30 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHh
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
|..+=..|...|++++|...|++-
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444445566666666666666554
No 328
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.38 E-value=98 Score=28.96 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCC--CC---hhhHHHHHHHHHhcCChh--HHHHHHHHh-HhCCCCCCcccHHHHHHH
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLKTP--AP---PVAWKSIIRCCTQNGLLV--ESLTCFVRM-IGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~~~--~~---~~~~~~li~~~~~~g~~~--~a~~~~~~m-~~~g~~p~~~t~~~ll~~ 115 (219)
+|+.+|..+|++..+..++..+... +| ...||..|+...+.|.++ +..+-..+. ...-+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8889999999999999998887521 12 367899999999988754 333333333 334577788888888877
Q ss_pred HhcccChhhHHHHHHHHH
Q 041894 116 CTLLVDFRFGESVHACII 133 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~ 133 (219)
...-..-..+.-++.++.
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 766444445555544443
No 329
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.14 E-value=82 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHh
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m 97 (219)
..+|..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555566666677766666664
No 330
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=48.98 E-value=1.8e+02 Score=25.14 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCCCCh-h--hHH---HHHHHHHh---cCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTLKTPAPP-V--AWK---SIIRCCTQ---NGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~--~~~---~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
-.++-.|-...+++.-.++.+.++..++. + +-+ -...++.+ .|+.++|.+++.......-.++..||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 45566788889999999999998743111 1 111 23344555 899999999999977777778888888877
Q ss_pred HHHhcc---------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 114 KSCTLL---------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 114 ~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
..|-+. ..++.|...+.. .-.+.||.++---+...+.-.|+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~k--gFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRK--GFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHH--HHcCCccccchHHHHHHHHHcCC
Confidence 766532 123334433332 22344665554444444444454
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=48.15 E-value=30 Score=16.05 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+|..+-..+...|++++|...|.+-.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555566666677777777766544
No 332
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.66 E-value=55 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=40.2
Q ss_pred HHhcCChhHHHHHHHHhHhC---CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
..+.|++.+|.+.|.+-+.. .+.|+..-|...-....+.|++++|..-..+..+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 45678999999999886542 4566666676666777788999988888776644
No 333
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.00 E-value=3.5e+02 Score=29.32 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=60.9
Q ss_pred CccccCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCChhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLD-TLKTPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
+-.+.+.+.+|...+++-..... .-....|-.+...|+.-+++|+..-+.. ....| ..+.- |--....|+++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~q-il~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQ-ILEHEASGNWAD 1467 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHH-HHHHHhhccHHH
Confidence 33455566666666665211100 1122334555557777777777666665 23333 22232 233344577777
Q ss_pred HHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
|...|+.+.+. .|+ ..+++-+++.--..+.++...-..+-
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 77777777654 344 55677666666666666655544333
No 334
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=46.34 E-value=1.4e+02 Score=23.24 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCC------CCChhhHHHHHH-HHHhcCC--hhHHHHHHHHhHhCCCCCCc--
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKT------PAPPVAWKSIIR-CCTQNGL--LVESLTCFVRMIGSGVYPDH-- 106 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~g~~p~~-- 106 (219)
...-++...-.....|++++|..-++.+.+ . -.-.|.-+.. +++..+. +-+|.-+|.- .+.+..|+.
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~-~l~~~pel~~ag~~~~a~QEyvEA~~l~~~-l~~~~~ps~~E 105 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR-LLAGFPELYFAGFVTTALQEYVEATLLYSI-LKDGRLPSPEE 105 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhhcchHHHHHHHHHHHHH-HhcCCCCCHHH
Confidence 445566667777788889999988887752 1 2345666665 5555543 4566655543 444444543
Q ss_pred --ccHHHHHHHHhcc--------------cChhhHHHHHHHHHHh
Q 041894 107 --NVFPSVLKSCTLL--------------VDFRFGESVHACIIRL 135 (219)
Q Consensus 107 --~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~ 135 (219)
+.+...|.+.++. |+++.|++.++.|...
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3555566666643 7788888888777653
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.52 E-value=1.3e+02 Score=22.57 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=63.3
Q ss_pred HHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~g~~ 87 (219)
++..-.+.++.++++.+++.+.-.. -.|...++-.. .+.+.|++.+|.++|+++.... ......+|+..|... .-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cC
Confidence 3344557789999999999987543 12223333333 4678999999999999997431 333344555444433 33
Q ss_pred hHHHHHHHH-hHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 88 VESLTCFVR-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 88 ~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
+..++.+-+ ..+.+-.|+.. .+++.+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 444555544 55554333332 34444444444443333
No 336
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.16 E-value=99 Score=27.08 Aligned_cols=85 Identities=6% Similarity=0.019 Sum_probs=58.3
Q ss_pred ccccCChhHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHH-H--HHHHhcCCh
Q 041894 14 PVSIKTKSQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI-I--RCCTQNGLL 87 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~l-i--~~~~~~g~~ 87 (219)
..+.|.+..|.+.|.+.+... ..|+...|...-....+.|++++|+.-=+....- |..-.-++ . .++.-.+++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 357788899988888887654 5666777777777788889999988777665555 54322222 2 344445778
Q ss_pred hHHHHHHHHhHh
Q 041894 88 VESLTCFVRMIG 99 (219)
Q Consensus 88 ~~a~~~~~~m~~ 99 (219)
++|++-|+.-.+
T Consensus 338 e~AV~d~~~a~q 349 (486)
T KOG0550|consen 338 EEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHh
Confidence 888888877443
No 337
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=44.56 E-value=43 Score=16.79 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
|..+=..+...|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334455555666666666665543
No 338
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.45 E-value=34 Score=26.65 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
.-|....-|.+.|.++.|..+++
T Consensus 183 ivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 183 IVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHcCCchHHHHHHh
Confidence 34555566666666666666554
No 339
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.18 E-value=62 Score=20.16 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
|....++-+++.++....++++...++...++|. -+..+|---++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344444455555555555555555555544442 333344444444443
No 340
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.21 E-value=88 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
-|..|+..|-..|.. ++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h------------------~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLH------------------RKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCcc------------------HHHHHHHHHHhc
Confidence 466677777777777 777777766554
No 341
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=42.96 E-value=1e+02 Score=20.70 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
....+++.+.+.|+- +..-+..+-. ..-..++|..+++.++.+ +..++..+++++. ..++.-+..++
T Consensus 24 ~v~~ilD~Ll~~~Vl-t~ee~e~I~~---~~t~~~qAr~Lld~l~~K-G~~A~~~F~~~L~-e~~~~L~~~L~ 90 (94)
T cd08329 24 SVLPILDSLLSANVI-TEQEYDVIKQ---KTQTPLQARELIDTVLVK-GNAAAEVFRNCLK-KNDPVLYRDLF 90 (94)
T ss_pred hhHHHHHHHHHcCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHhh-hHHHHHHHHHHHH-hcCHhHHHHHH
Confidence 345578888888844 4444444332 333469999999999888 8899999999984 34555544444
No 342
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.82 E-value=2.4e+02 Score=25.05 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=61.3
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----------------CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 32 KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-----------------TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 32 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
+.|+.-+......+... ..|++..|...++.+. .. .......++++.. .+++++|+.++
T Consensus 191 ~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~-~~~~i~~li~si~-~~d~~~Al~~l 266 (472)
T PRK14962 191 AEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLI-PIEVVRDYINAIF-NGDVKRVFTVL 266 (472)
T ss_pred HcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 44665555555555442 2466666666665532 01 1223344555543 58999999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcccChh------hHHHHHHHHHHhCCCcc
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFR------FGESVHACIIRLGVDLD 140 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~------~a~~~~~~m~~~g~~~~ 140 (219)
.+|...|..|....=-.+..++-..|..+ .+..+++...+.|++-.
T Consensus 267 ~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~ 318 (472)
T PRK14962 267 DDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEE 318 (472)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcch
Confidence 99999998887655444445555555433 44445555556665433
No 343
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=42.58 E-value=1.3e+02 Score=21.63 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=102.1
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcCCHHHHHHHHHhcCCC-----CChhhHHHHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTP-----APPVAWKSIIRC 80 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~li~~ 80 (219)
+...-......+.+..+...+.........+ .......-. .+...|+.+.|...+...... .....+......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 3334444555566777888877777655443 122222223 789999999999999875322 022334444444
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...++.+++...+....+..-......+..+-..+...+..+.+...+......... ....+..+-..+...|..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 252 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRY--- 252 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCH---
Confidence 6677899999999988776531113567778888888888899999888887665422 233333333333366667
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+.+...+++....+
T Consensus 253 ---------------~~~~~~~~~~~~~~ 266 (291)
T COG0457 253 ---------------EEALEALEKALELD 266 (291)
T ss_pred ---------------HHHHHHHHHHHHhC
Confidence 77777776655433
No 344
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.24 E-value=3e+02 Score=26.18 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=9.7
Q ss_pred cchhhHHHHhhcCCCCC
Q 041894 173 GREASVHEVLDKIPERN 189 (219)
Q Consensus 173 g~~~~a~~l~~~m~~~~ 189 (219)
.++.+|.++-++..-+.
T Consensus 892 nQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred HHHHHHHHHHHhccchh
Confidence 33466777766655443
No 345
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.62 E-value=32 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCH
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLV 55 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 55 (219)
.+|..+.+....-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34445555555667777777777777666666666666666666643
No 346
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.95 E-value=1.1e+02 Score=20.20 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=30.5
Q ss_pred cccCChhHH----HHHHHHHHHcCCCCc--HHHHH--HHHHHHhhcCCHHHHHHHHHhcC
Q 041894 15 VSIKTKSQA----KQLHAQIFKTLEPNS--RFLIS--RLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 15 ~~~~~~~~a----~~l~~~m~~~g~~~~--~~~~~--~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
.+.+++..| .+.|+...+.+..+. ...+. .+-......|+.++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 367787777 445555544443331 22222 23335667788888888887653
No 347
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=39.93 E-value=1e+02 Score=27.39 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=17.8
Q ss_pred hhHHHHHHhhhh-----HhHHHcCCCCC
Q 041894 194 LSSGLAGCNKFE-----KRVVSAGHDAD 216 (219)
Q Consensus 194 ~n~ll~~~~~~~-----~~m~~~g~~pd 216 (219)
--+|+.+..+.| +.|+++|.+|.
T Consensus 356 rG~Lm~a~~~~g~e~~FEtLveaGy~PE 383 (487)
T PRK05225 356 KGVLMVAMVKAGVELAFETMVDSGIIEE 383 (487)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHcCCCHH
Confidence 445777777776 78999999985
No 348
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.60 E-value=2.7e+02 Score=24.61 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHh----cc---cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 85 GLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCT----LL---VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~----~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+...+.+.++....+-+. .++......+++..+ +. .+++.+..+++.+...|.-|+.....+ |..+|+.=.
T Consensus 149 ~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~-i~vLCsi~~ 227 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPC-IEVLCSIVN 227 (464)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHH-HHHHhhHhc
Confidence 345566666666666543 356666666666433 32 467788899999999999997755555 455554322
Q ss_pred ---chhHHHHHhhhhc
Q 041894 157 ---MDMHIYDRFQGFG 169 (219)
Q Consensus 157 ---~~~~~~~~~~~~~ 169 (219)
+....|+.|..-+
T Consensus 228 ~~~l~~~~w~~m~nL~ 243 (464)
T PF11864_consen 228 SVSLCKPSWRTMRNLL 243 (464)
T ss_pred ccccchhHHHHHHHHH
Confidence 2233677766554
No 349
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.56 E-value=1e+02 Score=20.98 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
++.....+..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 344444444445666666666655555555555556666666655
No 350
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.54 E-value=90 Score=24.26 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCcccHHHHHH-HHhcccChhhHHHH-HHHHHHhCCCccHH---
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLK-SCTLLVDFRFGESV-HACIIRLGVDLDLY--- 142 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~-~~~~~g~~~~a~~~-~~~m~~~g~~~~~~--- 142 (219)
+++-++...-...+.|++++|..-++++.+. .++--...|..+.. +++..+.-+.++.. +-...+.+-.|...
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Confidence 4444555555556678899999988887543 22223345566665 67777765555544 33333333333322
Q ss_pred -HHHHHHHHHHh-cCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 143 -TNNALMNMYAQ-SQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 143 -~~~~ll~~y~~-~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
..-.-|.+.+. -|.+.+.+.+ .-+.|+++.|.++++-|..
T Consensus 108 V~~~~YilGl~D~vGELrR~~le-----~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLE-----LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-----HHHhccHHHHHHHHHHHHH
Confidence 11112222221 1111111100 1245666999988888773
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.41 E-value=1.4e+02 Score=23.83 Aligned_cols=74 Identities=9% Similarity=-0.101 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHhH----hCC-CCCCcccHHHHHHHHhcccChhhHHHHH
Q 041894 57 DSLCLLDTLKTPAPP--VAWKSIIRCCTQNGLLVESLTCFVRMI----GSG-VYPDHNVFPSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 57 ~A~~~~~~m~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 129 (219)
.|..-|...... -. ..---+-.-|.+.|++++|.++|+.+. +.| ..+...+...++.++.+.|+.+....+.
T Consensus 163 ~A~~~f~~~~~~-R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 163 KAYEQFKKYGQN-RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455555544433 21 222234567788899999999998874 233 4566777888888888888888777664
Q ss_pred HH
Q 041894 130 AC 131 (219)
Q Consensus 130 ~~ 131 (219)
=+
T Consensus 242 le 243 (247)
T PF11817_consen 242 LE 243 (247)
T ss_pred HH
Confidence 33
No 352
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.26 E-value=2.6e+02 Score=24.32 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=65.9
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHH-----HhhcCCHHHHHHHHHhcC---CCCChhhHHHHHH
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFI-----YNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIR 79 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~-----~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~ 79 (219)
.|...++.++.+- .+.+.+.|..|+... ..+.+.. ....|+.+-+..+++.=. .+ |..-.+.|..
T Consensus 38 ~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~-d~~g~tpL~~ 112 (480)
T PHA03100 38 PLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP-DNNGITPLLY 112 (480)
T ss_pred hhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCC-CCCCCchhhH
Confidence 3444455566544 444455676655432 2234444 556666666655554322 22 3333444444
Q ss_pred HHH-hcCChhHHHHHHHHhHhCCCCCCcc--cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhc
Q 041894 80 CCT-QNGLLVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQS 154 (219)
Q Consensus 80 ~~~-~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~ 154 (219)
+.. ..|+.+ +++.+.+.|..++.. .-.+.+...+..|. .-.++.+.+.+.|..++... ..+.+...++.
T Consensus 113 A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 113 AISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred HHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 442 445444 334444556555332 12234444555551 12245555666776654332 23456666677
Q ss_pred CCc
Q 041894 155 QNM 157 (219)
Q Consensus 155 g~~ 157 (219)
|+.
T Consensus 187 ~~~ 189 (480)
T PHA03100 187 GNI 189 (480)
T ss_pred CCH
Confidence 766
No 353
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.17 E-value=69 Score=21.05 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred hhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 176 ASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 176 ~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
++|+++++..++++ ...|.++.+++-..|.
T Consensus 47 ~q~~~LLd~L~~RG-~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 47 DQARQLLIDLETRG-KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHhcCc
Confidence 99999999999999 8999999999877764
No 354
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.13 E-value=53 Score=23.99 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC-Ch-hhHHHHHHHHHhcCChh
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA-PP-VAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~-~~-~~~~~li~~~~~~g~~~ 88 (219)
.++-..+.+.|+.++.. --.++..+.+.+..-.|.++++.+.. |+ +. ..|++ ++.+...|-+.
T Consensus 6 ~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~-L~~l~e~Glv~ 72 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRT-LKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHH-HHHHHHCCCEE
Confidence 34566777888776554 35666777777777888888888863 30 22 33544 46666666443
No 355
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.01 E-value=2.6e+02 Score=24.29 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCCcHHHH--HHHHHHHh--hcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcC--ChhHHHHHHHH
Q 041894 25 QLHAQIFKTLEPNSRFLI--SRLLFIYN--NFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNG--LLVESLTCFVR 96 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~--~~ll~~~~--~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g--~~~~a~~~~~~ 96 (219)
++.+.+.+.|..++.... .+.+...+ +.|+.+-+..+++.=... .+..-+ +.+...+..| +.+ +.+.
T Consensus 87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~----iv~~ 161 (480)
T PHA03100 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNKIDLK----ILKL 161 (480)
T ss_pred HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCCChHH----HHHH
Confidence 345555677755433211 23333334 777777777766642222 022223 3455555566 433 4455
Q ss_pred hHhCCCCCCccc--HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--------HHHHHHHHHhcCC
Q 041894 97 MIGSGVYPDHNV--FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--------NNALMNMYAQSQN 156 (219)
Q Consensus 97 m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--------~~~ll~~y~~~g~ 156 (219)
+.+.|..++... -.+.+...+..|..+ +.+.+.+.|..++... +...+..-++.|.
T Consensus 162 Ll~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~ 227 (480)
T PHA03100 162 LIDKGVDINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE 227 (480)
T ss_pred HHHCCCCcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence 566776665322 223455556666654 4455566676655321 1444555566666
No 356
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=38.62 E-value=1.2e+02 Score=25.62 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHH
Q 041894 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114 (219)
Q Consensus 55 ~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 114 (219)
.-...++++.+-.. |+..-++|+++.. .|+.+.-+..|+++.+.|+.++......+..
T Consensus 292 ~y~~~kfvd~L~r~-d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae 349 (354)
T TIGR01914 292 FYSWPKFVDFLARR-DPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAE 349 (354)
T ss_pred hcchHHHHHHHhcc-ChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 33344455544444 4445555555544 3445555555655656665555544444433
No 357
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.89 E-value=1.6e+02 Score=23.48 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=37.2
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHh----C-CCccHHHHHHHHHHHHhcCCchhH
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRL----G-VDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
-+-.-|.+.|+++.|.++++.+... | ..+...+...|..++.+.|+.+..
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4456678889999999998887422 3 345677777888888888888655
No 358
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.89 E-value=1.1e+02 Score=23.91 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
...+.+++.+...|+++.|.+.|.-+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 45677888888888888888888777654
No 359
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=37.69 E-value=1.5e+02 Score=21.01 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhH-hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+......+|+.|--. ++-|++++++.+ ..|+. +..+=..+++...+.|.+++...-++++..+.
T Consensus 25 ~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~Wl~m~~~RN 89 (124)
T PF08780_consen 25 SELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIWLDMLEDRN 89 (124)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 556778888888775 788888888844 56775 44455788888888888877766666555544
No 360
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.55 E-value=75 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=35.6
Q ss_pred CCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 102 VYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 102 ~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
+.||. .-|+..|..-.+.||++.|.+++++-++.|+.--..++-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34543 457899999999999999999999999999876555543
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.22 E-value=1.6e+02 Score=21.35 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=15.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
++..--+-+++|.+.+++.-|.++|+..
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344555555555556666666555443
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.01 E-value=93 Score=26.00 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-----CCCCCCcc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-----SGVYPDHN 107 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 107 (219)
+.+..-+.|..+|.+.+|.++.+... +. +...|..++..+...|+--.+.+-|+.|.+ -|+.-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 34555678888999999999987765 33 677888999999999997777777666632 25555443
No 363
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.60 E-value=48 Score=24.90 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhH
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA---PPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~ 89 (219)
+-+.+++.|+.++..-. .++..+.....+-.|.++++.+.+.+ +..|---.|..+...|-+.+
T Consensus 13 ~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 44556777887666543 55555555566778999998886321 33333334567777775543
No 364
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.56 E-value=1.8e+02 Score=21.74 Aligned_cols=46 Identities=4% Similarity=-0.139 Sum_probs=20.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 121 (219)
+++..+....++-.|.++++.+.+.+..++..|---.|+.+.+.|-
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344444444444455555555544444444433333444444443
No 365
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=36.49 E-value=1.2e+02 Score=19.71 Aligned_cols=59 Identities=3% Similarity=-0.097 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~ 83 (219)
......+++.+.+.|+- +..-|..+.. ..-..++|.++++.++.. +..++..+.+++..
T Consensus 14 v~~v~~ilD~L~~~~Vi-t~e~~~~I~a---~~T~~~kar~Lld~l~~k-G~~A~~~F~~~L~e 72 (82)
T cd08330 14 VTNVDPILDKLHGKKVI-TQEQYSEVRA---EKTNQEKMRKLFSFVRSW-GASCKDIFYQILRE 72 (82)
T ss_pred HhhHHHHHHHHHHCCCC-CHHHHHHHHc---CCCcHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 34566788888888843 4555555544 456688999999999888 88999999988853
No 366
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.68 E-value=53 Score=20.48 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
....++-++..+++..-++++..++.+..++|. .+..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 556788888888888788888888888887774 23334433333333
No 367
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.26 E-value=2.5e+02 Score=23.72 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
..=-.+|.-|...|-.+.|...|..+--..|.-|..
T Consensus 218 ~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL 253 (365)
T PF09797_consen 218 QLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTL 253 (365)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHh
Confidence 333345566666666666666666654444444433
No 368
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.08 E-value=3.4e+02 Score=24.51 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCcccHHHHHH-
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLK- 114 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~- 114 (219)
+....+..|+..+. .-+.+.-.+++.++... ....+..++++....|-..... +..++.++ .+.+. ..-..+..
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~~-~~~~r~~~~Dal~~~GT~~a~~-~i~~~i~~~~~~~~-ea~~~~~~~ 383 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYEK-KKKARRIFLDAVAQAGTPPALK-FIKQWIKNKKITPL-EAAQLLAVL 383 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCHH-HHHHHHHHH
Confidence 34445666666554 44477777777776543 3578999999999998655544 44454444 44432 22222222
Q ss_pred -HHhcccChhhHHHHHHHHHHhCCCccH-------HHHHHHHHHHHhcC
Q 041894 115 -SCTLLVDFRFGESVHACIIRLGVDLDL-------YTNNALMNMYAQSQ 155 (219)
Q Consensus 115 -~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~y~~~g 155 (219)
...+.-..+....+++.+......+.. -++.+|++-+|...
T Consensus 384 ~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 384 PHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 223334455555555555444445543 45556666566544
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.08 E-value=2e+02 Score=23.43 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=43.0
Q ss_pred hcCChhHHHHHHHHhHhC-C-----------CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGS-G-----------VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~-g-----------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
..|+..+|+..++.=... | =.|.......++..|.+ +++++|.+++.++.+.|+.|...+-+
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~ 277 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITT 277 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 356666666665542211 1 15777777778877754 78999999999999999998764433
No 370
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.03 E-value=36 Score=29.79 Aligned_cols=51 Identities=8% Similarity=-0.032 Sum_probs=40.0
Q ss_pred CccccCChhHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEP---NSRFLISRLLFIYNNFNLVHDSLCLLD 63 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~ 63 (219)
-+|+.|+.+....+|+..++.|-. .-..+|+.|=++|.-.+++++|.++..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 368999999999999999999933 233456666677778889999988753
No 371
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.42 E-value=1.2e+02 Score=21.00 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+++........-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45566666666777888888888887777766555557888888876
No 372
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.27 E-value=1.5e+02 Score=25.45 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=42.8
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|.+.|.+++|...|..-.. +.| |.+++..--.+|.+...+..|+.=....+.. -...+.+|.|.+.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 45677888888888765332 346 7778877778888888777666554443222 12335666665544
No 373
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.13 E-value=1.6e+02 Score=26.15 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHH-----------hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCT-----------QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 54 ~~~~A~~~~~~m~~~~~~~~~~~li~~~~-----------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
++++|..+.+.++.. ..+...+.... .-+.+++-.++++.+.+.| .+| ...+-|++|.+.+++
T Consensus 29 d~~eav~y~k~~p~~---k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y 102 (480)
T TIGR01503 29 DLQDAVDYHKSIPAH---KNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRY 102 (480)
T ss_pred CHHHHHHHHHhCCcc---ccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccH
Confidence 677788877777642 22222222222 2345677777777777665 333 444557888899999
Q ss_pred hhHHHHHHHHHH
Q 041894 123 RFGESVHACIIR 134 (219)
Q Consensus 123 ~~a~~~~~~m~~ 134 (219)
+.|+..++.-.+
T Consensus 103 ~~A~~~l~~s~~ 114 (480)
T TIGR01503 103 DEAAVGIKESIK 114 (480)
T ss_pred HHHHHHHHhhhh
Confidence 988888777554
No 374
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.04 E-value=74 Score=16.71 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=24.6
Q ss_pred eeehhHHHHHHhhhhHhHHHcCCCCCCcC
Q 041894 191 NVELSSGLAGCNKFEKRVVSAGHDADLDA 219 (219)
Q Consensus 191 ~~~~n~ll~~~~~~~~~m~~~g~~pd~~~ 219 (219)
.++.+.++++..+..+.+.+.|-.|+-++
T Consensus 4 ~i~~~~~~d~a~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 4 TISKEEYLDMASRVNNFYESNGRLPNYVS 32 (33)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCeee
Confidence 56788899999999999999998888653
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.89 E-value=2.9e+02 Score=23.24 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC------------------------------CCC
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK------------------------------TPA 69 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------------------------~~~ 69 (219)
...|.++|.-+.+..-+ ..+-+.+|..+-...+...|...|.... .-
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~- 225 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY- 225 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc-
Confidence 45889999998876423 3344677888888888888777665331 11
Q ss_pred ChhhHHHHHHHHHhcC-ChhHHHHHHHHhHhCCCCCCc-----------------ccHHHHHHHHhcccChhhHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNG-LLVESLTCFVRMIGSGVYPDH-----------------NVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~-----------------~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
|+.-|-+.+...-... .++++-++...... +.=|+. .++..+-+.|..+|.+.+|.++++.
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666665554432 34555555544322 221211 1234456788899999999999999
Q ss_pred HHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 132 m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..... +.+...|-.|+..|+..|+-
T Consensus 305 ~ltld-pL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 305 ALTLD-PLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHhccc
Confidence 88876 57888999999999999995
No 376
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.74 E-value=30 Score=31.15 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCccHHHHHH-----HHHHHHh---cCCc-------hhHHHHHhhhh--ccCCcchhhHHHHhhcCCCC
Q 041894 126 ESVHACIIRLGVDLDLYTNNA-----LMNMYAQ---SQNM-------DMHIYDRFQGF--GFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 126 ~~~~~~m~~~g~~~~~~~~~~-----ll~~y~~---~g~~-------~~~~~~~~~~~--~~~~g~~~~a~~l~~~m~~~ 188 (219)
..+++.+.-.|+.||..||++ +++.+.+ .|+- +-..-++.++. .||...+|+-+++|++|..-
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kG 332 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKG 332 (712)
T ss_pred HHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhcc
Confidence 345777778899999888775 3333322 2221 00012223332 48999999999999999853
No 377
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.74 E-value=2.9e+02 Score=23.32 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~ 83 (219)
+++|..|.+.+++|.-+++.=+.-.+.+.=.+..+..+|+.+-. |..-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s--D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS--DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc--ChhhhHHHHHHHHH
Confidence 45666677777777777766666666666667777777776653 22235555555543
No 378
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.26 E-value=2.3e+02 Score=22.52 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=57.2
Q ss_pred CHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcC---------ChhHHHHHHHHhHhCCCC-CCcccHHHHH
Q 041894 54 LVHDSLCLLDTLKTPA----------PPVAWKSIIRCCTQNG---------LLVESLTCFVRMIGSGVY-PDHNVFPSVL 113 (219)
Q Consensus 54 ~~~~A~~~~~~m~~~~----------~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~-p~~~t~~~ll 113 (219)
.++.|..++.+|..+. -..-|.++-.+|.+.| +++--.++++.-++.|++ -=...|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 3688999999986320 3467899999999987 444555566666677765 2346788888
Q ss_pred HHHhcccChhhHHHHHHHHH
Q 041894 114 KSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~ 133 (219)
+-=.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77666677888888887664
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.97 E-value=1.8e+02 Score=20.58 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 57 DSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 57 ~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
++..+|..|...+ -..-|...-.-+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666654220 22345555555666666666666664
No 380
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.62 E-value=4.3e+02 Score=24.94 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=36.6
Q ss_pred hHHHHHHhCccccCChhHHHHHHH--HHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHA--QIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~--~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
--|++.-++|.+.++..--+.+.+ ++.++|-.|+...... -++-.|.+++|-++|.+-
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHHHc
Confidence 346677778888888776655543 6778888788764433 334455556665555543
No 381
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.93 E-value=1.3e+02 Score=18.84 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 041894 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 21 ~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 88 (219)
.....+++.+.+.|+- +..-+..+.. .....+.+.++++.+..+ +..+|..++.++...+.+.
T Consensus 13 ~~~~~il~~L~~~~vl-t~~e~~~i~~---~~~~~~k~~~Lld~l~~k-g~~af~~F~~~L~~~~~~~ 75 (80)
T cd01671 13 LDVEDVLDHLLSDGVL-TEEEYEKIRS---ESTRQDKARKLLDILPRK-GPKAFQSFLQALQETDQPH 75 (80)
T ss_pred ccHHHHHHHHHHcCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcCChh
Confidence 4556678888887754 3333444333 233688888899988888 8888999988887766443
No 382
>COG5210 GTPase-activating protein [General function prediction only]
Probab=31.65 E-value=1.4e+02 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=21.0
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
++..|.+.|+.+...++.-++..+.+...++.+.++++.+.-.|..
T Consensus 364 l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH
Confidence 3344444444444444444444444444444444444444444433
No 383
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=31.12 E-value=1.6e+02 Score=19.34 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=14.7
Q ss_pred hcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
..|+.+.|..+++.++ . ..--|..+++++...|.
T Consensus 44 ~~G~~~aa~~Ll~~L~-r-~~~Wf~~Fl~AL~~~~~ 77 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-R-RDNWLEPFLDALRECGL 77 (84)
T ss_pred cCChHHHHHHHHHHHh-c-cCChHHHHHHHHHHcCC
Confidence 3444444444444444 2 33344444444444443
No 384
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.12 E-value=1.7e+02 Score=19.80 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=11.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+|..|...++.++|..-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4444445555555555555544
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.95 E-value=3.1e+02 Score=22.78 Aligned_cols=84 Identities=10% Similarity=0.127 Sum_probs=46.7
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-cCCCC--ChhhHHHHHHHHHh----
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT-LKTPA--PPVAWKSIIRCCTQ---- 83 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-m~~~~--~~~~~~~li~~~~~---- 83 (219)
|.|++..+++.++....=+--+.--+.-..+....|-.|.+.+.+..+.++-.. +..|+ +...|.++..-|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455666666655544322222211111233456667778888887776665432 33332 44557776666655
Q ss_pred -cCChhHHHHHH
Q 041894 84 -NGLLVESLTCF 94 (219)
Q Consensus 84 -~g~~~~a~~~~ 94 (219)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 58888887655
No 386
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.88 E-value=2.1e+02 Score=20.79 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=46.7
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+...+.+.|++++..= ..+++.....++.-.|+.+++.+.+.+..-+..|--.-|+.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3445567787776532 3567778878777889999999998887666555555588888888774
No 387
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.56 E-value=44 Score=20.72 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHcC-CCCcH
Q 041894 19 TKSQAKQLHAQIFKTL-EPNSR 39 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g-~~~~~ 39 (219)
+++.|...|..+...| ++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7889999999998766 55554
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.02 E-value=2.5e+02 Score=21.79 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+-.|.+.|.+++|.++++...+ .|+......-+....+..+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 45567788888888888777655 45555556666666665555
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=29.74 E-value=1.9e+02 Score=20.03 Aligned_cols=86 Identities=17% Similarity=0.055 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHH--HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 54 LVHDSLCLLDTLKTPAPPVAWKSI--IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 54 ~~~~A~~~~~~m~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.+++|..+-+-+...++..-.-.+ ++.+...|++++|..+.+.+ ..||...|-++-. .+.|..+....-+..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 356777776666533122223333 35566789999999877665 4788888766543 366777777777777
Q ss_pred HHHhCCCccHHHHHH
Q 041894 132 IIRLGVDLDLYTNNA 146 (219)
Q Consensus 132 m~~~g~~~~~~~~~~ 146 (219)
|..+| .|....+.+
T Consensus 94 la~sg-~p~lq~Faa 107 (115)
T TIGR02508 94 LAASG-DPRLQTFVA 107 (115)
T ss_pred HHhCC-CHHHHHHHH
Confidence 87777 566555544
No 390
>PHA02884 ankyrin repeat protein; Provisional
Probab=29.64 E-value=1.6e+02 Score=24.39 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=11.4
Q ss_pred CCCCChhhHHHHHHHHHhcCChh
Q 041894 66 KTPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~g~~~ 88 (219)
++. |-.-+++++.+..+.|+.+
T Consensus 26 ~~~-d~~~~~~lL~~A~~~~~~e 47 (300)
T PHA02884 26 KKK-NKICIANILYSSIKFHYTD 47 (300)
T ss_pred hcc-CcCCCCHHHHHHHHcCCHH
Confidence 344 5555555555555555544
No 391
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.98 E-value=4.4e+02 Score=23.84 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=81.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC--ChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA--PPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~ 81 (219)
...|+.+++.+ +.-+.+.-..++.++.. .+ ...+..++++....|......-+.+.+.... +...-..+....
T Consensus 310 ~~~f~~lv~~l-R~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~ 384 (574)
T smart00638 310 AAKFLRLVRLL-RTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLP 384 (574)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34566666555 44566777777777754 11 5678889999999998887777777776430 223333344433
Q ss_pred HhcCC-hhHHHHHHHHhHhC-CCCCCc-------ccHHHHHHHHhcccCh------hhHHHH-HHHHHHhCCCccHHHHH
Q 041894 82 TQNGL-LVESLTCFVRMIGS-GVYPDH-------NVFPSVLKSCTLLVDF------RFGESV-HACIIRLGVDLDLYTNN 145 (219)
Q Consensus 82 ~~~g~-~~~a~~~~~~m~~~-g~~p~~-------~t~~~ll~~~~~~g~~------~~a~~~-~~~m~~~g~~~~~~~~~ 145 (219)
..... -.+.++.+.+|.+. .+.+.. .+|.++++-+|..... +..... .+.+...--.-|..--.
T Consensus 385 ~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 464 (574)
T smart00638 385 HTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQ 464 (574)
T ss_pred HhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhee
Confidence 33322 35566666666654 344443 4566666655544331 222222 22222211112333345
Q ss_pred HHHHHHHhcCCc
Q 041894 146 ALMNMYAQSQNM 157 (219)
Q Consensus 146 ~ll~~y~~~g~~ 157 (219)
..|++++..|..
T Consensus 465 ~~LkaLGN~g~~ 476 (574)
T smart00638 465 LYLKALGNAGHP 476 (574)
T ss_pred eHHHhhhccCCh
Confidence 567888888877
No 392
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.84 E-value=2.2e+02 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
-.|++.++-.|++..|+++++.+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc
Confidence 33444445555555555555444
No 393
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=28.37 E-value=1.8e+02 Score=19.10 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 041894 54 LVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104 (219)
Q Consensus 54 ~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 104 (219)
+.+.+.+.-+..... |..+...++.++...-..+-|.+++..|--+|-.|
T Consensus 21 N~~AVq~~~e~~~~~-nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~tP 70 (81)
T PF09119_consen 21 NTNAVQKYVENQRVE-NQKTLQVFLEALAERYGEETANKVLDKMDLSGGTP 70 (81)
T ss_dssp -HHHHHHHHHCS--S--HHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCC
Confidence 344444455555556 77777888888887777777777777765554444
No 394
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=28.31 E-value=1.8e+02 Score=19.17 Aligned_cols=60 Identities=10% Similarity=-0.059 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 34 LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 34 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
.|.|+...||.+++.....+.+..|..++.....+.+-....-++ ...+..|.++.....
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~ll-----e~~PGaa~qia~~v~ 70 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELL-----EENPGAAMQIAGAVN 70 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHH-----HHCCCHHHHHHHHHH
Confidence 467888899999988888888888877777665441223333333 123444555554443
No 395
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=27.68 E-value=1.4e+02 Score=21.97 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=31.6
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
|...++-+. +.|.....+.+.+.|.+.|+......|+-.+.-
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 444444444 458888889999999999999888888876653
No 396
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=27.67 E-value=5.5e+02 Score=24.57 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=56.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-----------CC
Q 041894 35 EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-----------VY 103 (219)
Q Consensus 35 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~ 103 (219)
++-+....-.+-.++.+.|.-++|.+.|-....| .+.+.+|...+++.+|.++-+...-.. +-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 4555666677777888888888888777665544 245566777777777776665532111 11
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.+..+.. .|.-+.++|..-+|-+++.+|.+
T Consensus 922 ~~~~~~e-aIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 922 ADANHME-AIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hhcchHH-HHHHhhhcccchhHHHHHHHHhH
Confidence 1222221 34556677777777777777654
No 397
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=27.43 E-value=14 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=14.1
Q ss_pred HHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 133 IRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 133 ~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+..+..+..+|.+.|++|+|.|.+
T Consensus 16 ~QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 16 KQYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHHTTTTTTTB------TTSS--EE
T ss_pred HHHHhhcccceeeeeecccccceEE
Confidence 4667888899999999999999976
No 398
>PHA02878 ankyrin repeat protein; Provisional
Probab=27.40 E-value=4.2e+02 Score=23.17 Aligned_cols=47 Identities=11% Similarity=-0.072 Sum_probs=21.8
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
++.|+.+-+..+ .+.|..++... -.+-+..-+..|+.+.+..+++..
T Consensus 45 ~~~g~~e~vk~L----l~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~ 93 (477)
T PHA02878 45 VEARNLDVVKSL----LTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSI 93 (477)
T ss_pred HHcCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHH
Confidence 445555544433 44564443321 122333345556666665555543
No 399
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.09 E-value=2.3e+02 Score=20.02 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
++|+...++...++|..+.+.|.+.| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56888888889999999999999998 445444444433
No 400
>PRK11906 transcriptional regulator; Provisional
Probab=26.98 E-value=4.5e+02 Score=23.37 Aligned_cols=107 Identities=9% Similarity=-0.002 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-PVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
....|.++-....+.+ +.|......+=....-.++++.|...|++.. .| | ..+|-..=..+.-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555555555 3455555555555566666888888887655 33 3 2223222223334577888887777
Q ss_pred H-hHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 96 R-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 96 ~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
+ ++-+-.+....+....++.|+..+ ++.+.++
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 7 444333334445555555555543 3444444
No 401
>PRK12357 glutaminase; Reviewed
Probab=26.88 E-value=3.8e+02 Score=22.66 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=18.7
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
++...|..+..-.+|++++++++-+...-
T Consensus 178 AlA~~Lks~g~i~~d~e~~Ld~Yf~qCsi 206 (326)
T PRK12357 178 ALAYYLKETGFLESDVEETLEVYLKQCSI 206 (326)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhcc
Confidence 34444555655567788888888766543
No 402
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.73 E-value=5.3e+02 Score=24.08 Aligned_cols=82 Identities=10% Similarity=-0.159 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
+..-|..|=++..+.+++..|.+-|.. ..-|..|+-.+...|+-+....+=..-.+.| ..|...-+|-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~------a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~ 732 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLR------ARDLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYF 732 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHh------hcchhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHH
Confidence 455688898999999999999999873 3446677777777777765444444444444 2344556677
Q ss_pred cccChhhHHHHHHH
Q 041894 118 LLVDFRFGESVHAC 131 (219)
Q Consensus 118 ~~g~~~~a~~~~~~ 131 (219)
..|+++++.+++..
T Consensus 733 l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 733 LSGDYEECLELLIS 746 (794)
T ss_pred HcCCHHHHHHHHHh
Confidence 78888877777543
No 403
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.68 E-value=2e+02 Score=26.11 Aligned_cols=63 Identities=6% Similarity=-0.013 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
....-++.-|.+.+++++|..++..|-=+-. .--....+.+.+...+...-++.+..++....
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4455688899999999999999988831100 11123455566666666544555555555443
No 404
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.44 E-value=2e+02 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=21.0
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL 34 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g 34 (219)
..+.+|+-|...|+++.|.+.|..+++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 45667777777777777777777777654
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.41 E-value=90 Score=15.06 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL 46 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll 46 (219)
|+.+.+..+|+++.+.- +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 45667777777776543 23455555544
No 406
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.39 E-value=1.1e+02 Score=24.26 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHHHhcCC----hhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--cccChhhHHHHHHHHHHhCCCccHHH
Q 041894 70 PPVAWKSIIRCCTQNGL----LVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
+..|+-.||.-+-+... +.|=..+|..+. -|-.+...|- ++|.++ --++.+-+...|...+...
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~---------~Wr~vF~~~D~D~SG~I~-~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKYIN---------QWRNVFRTYDRDRSGTID-SSELRQALTQLGYRLSPQF 161 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH---------HHHHHHHhcccCCCCccc-HHHHHHHHHHcCcCCCHHH
Confidence 55666666666665432 222222332221 2333344443 234443 3355555667799999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
++.|++-|.+.+.- +..|+.+.+++ .....+.+..+++
T Consensus 162 ~~~lv~kyd~~~~g-~i~FD~FI~cc------v~L~~lt~~Fr~~ 199 (221)
T KOG0037|consen 162 YNLLVRKYDRFGGG-RIDFDDFIQCC------VVLQRLTEAFRRR 199 (221)
T ss_pred HHHHHHHhccccCC-ceeHHHHHHHH------HHHHHHHHHHHHh
Confidence 99999999987522 34677777777 6666665555543
No 407
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.23 E-value=4.7e+02 Score=23.31 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
-.++..+.+.|+.+...++.-++..+.+.-.++.|.++|+-+-
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf 404 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLF 404 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4578888899999999999999999999999999999999764
No 408
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=26.13 E-value=1.8e+02 Score=21.80 Aligned_cols=81 Identities=12% Similarity=-0.067 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHcC----CCCcH---HHHHHHHHHHhhcCCHHHHHHHHH-hcC-CCCChhhHHHHHHHHHhcCChhH
Q 041894 19 TKSQAKQLHAQIFKTL----EPNSR---FLISRLLFIYNNFNLVHDSLCLLD-TLK-TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g----~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~-~m~-~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
+-+.|..+|..+.+.. +.++. ......+..+.+..+++-. ..|. ... .+ ...+..-++..+.+.-.++.
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~-~~l~~~~~i~~-~~~~~~W~~~lF~~~~~~~~ 185 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLY-KHLKDKLGIDP-SLYALRWFLTLFARELPLEI 185 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHH-HHHHHhcCCCc-hhHHHHHHHHHHHhhCCHHH
Confidence 4566766776665543 33442 2334444445555554433 3333 243 45 66777778888888778999
Q ss_pred HHHHHHHhHhCC
Q 041894 90 SLTCFVRMIGSG 101 (219)
Q Consensus 90 a~~~~~~m~~~g 101 (219)
+.++|+.+...|
T Consensus 186 ~~riwD~~l~eG 197 (199)
T smart00164 186 VLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHhcC
Confidence 999999988776
No 409
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=26.06 E-value=58 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHH
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPS 111 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 111 (219)
++++.. .|+.+.|.++++.+...|++|-...|..
T Consensus 4 L~Da~L-~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 4 LIDALL-AGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 344544 5889999999999999998888765543
No 410
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=25.81 E-value=2.1e+02 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcC
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFN 53 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g 53 (219)
|.+.+-+.|+..+...++.|++-|.+.+
T Consensus 146 L~~Al~~~Gy~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 146 LRQALTQLGYRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred HHHHHHHcCcCCCHHHHHHHHHHhcccc
Confidence 3344444455555555555555555443
No 411
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.76 E-value=3.2e+02 Score=21.18 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=14.4
Q ss_pred cCCcchhhHHHHhhcCCCC
Q 041894 170 FNGGREASVHEVLDKIPER 188 (219)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~ 188 (219)
++.||+.+|.+.|+.+...
T Consensus 178 ~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccchHHHHHHHHHHHcc
Confidence 4566669999999987754
No 412
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=25.69 E-value=1.2e+02 Score=17.79 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHhHhCCCCCC
Q 041894 85 GLLVESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~ 105 (219)
|--.+++.+.-++.+.|+.|.
T Consensus 18 gLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 18 GLDRETLSICIELCENGVNPE 38 (48)
T ss_pred CCCHHHHHHHHHHHHCCCCHH
Confidence 444444444445555554443
No 413
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=25.54 E-value=4.7e+02 Score=23.05 Aligned_cols=174 Identities=11% Similarity=-0.051 Sum_probs=95.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHH--HHHHHHHHhh---cCCHHHHHHHHHhcC--CCCChhh-HH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFL--ISRLLFIYNN---FNLVHDSLCLLDTLK--TPAPPVA-WK 75 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~--~~~ll~~~~~---~g~~~~A~~~~~~m~--~~~~~~~-~~ 75 (219)
..+.+.|...|..|+++.|.++.+.-++.. +.++..- -..||.+-.. ..+...|...-.+-. .| |.+. --
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p-dlvPaav 267 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP-DLVPAAV 267 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-ccchHHH
Confidence 455667777777777777777777666554 3444432 1222222111 223444444433222 34 4332 22
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH-HHHHHHHhCCCc-cHHHHHHHHHHHHh
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES-VHACIIRLGVDL-DLYTNNALMNMYAQ 153 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-~~~~m~~~g~~~-~~~~~~~ll~~y~~ 153 (219)
.--.++.+.|++.++-.+++.+=+..=.|+ ++ .+....+.|+....+- -...+.. ++| +..+--++.++-..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHh
Confidence 344788899999999999998877644444 33 3344556666433321 1222222 233 45566666777777
Q ss_pred cCCchhHH---------------HHHhhhhc-cCCcchhhHHHHhhcC
Q 041894 154 SQNMDMHI---------------YDRFQGFG-FNGGREASVHEVLDKI 185 (219)
Q Consensus 154 ~g~~~~~~---------------~~~~~~~~-~~~g~~~~a~~l~~~m 185 (219)
.|++..+. |=-|.... .+.||-.+++..+.+-
T Consensus 342 a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 77775441 11122222 3568888998888653
No 414
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.47 E-value=3.1e+02 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHhCccccCChhHHHHHHHHHHHc
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKT 33 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~ 33 (219)
.+++.|.+.|.+++|.+++....+.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L 135 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRL 135 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHH
Confidence 4556666666666666666655443
No 415
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.37 E-value=2e+02 Score=18.63 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHhcC---CCCChhhHHHHHHHHHh
Q 041894 56 HDSLCLLDTLK---TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 56 ~~A~~~~~~m~---~~~~~~~~~~li~~~~~ 83 (219)
+-|..++..++ .+ .+..||++-.-+.+
T Consensus 14 EmA~~mL~DLr~dekR-sPQLYnAI~k~L~R 43 (82)
T PF11123_consen 14 EMAQQMLADLRDDEKR-SPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHhcchhhc-ChHHHHHHHHHHHH
Confidence 44444554444 12 34555555544444
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.34 E-value=3.9e+02 Score=22.97 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=22.6
Q ss_pred hcccChhhHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCc
Q 041894 117 TLLVDFRFGESVHACIIRL-GVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+.|++++|.+.+..+.+. .+..-..+...||+++....-+
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777776665433 2222333445566666655555
No 417
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.29 E-value=2e+02 Score=20.55 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHH
Q 041894 56 HDSLCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 56 ~~A~~~~~~m~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+++.++|..|... .+ .-|-..-.-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467788888755 32 346666666777899999998885
No 418
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=25.06 E-value=3.8e+02 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.051 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
....+.|+.|.+.+.+++|-..+..-.
T Consensus 89 DlLp~tIDSyTR~N~Ye~AavgL~~Si 115 (485)
T COG4865 89 DLLPSTIDSYTRLNRYEEAAVGLKKSI 115 (485)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHhh
Confidence 344555666666666666555554433
No 419
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.01 E-value=1.4e+02 Score=17.66 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHHhHh
Q 041894 80 CCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~ 99 (219)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555544
No 420
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=24.93 E-value=1.5e+02 Score=18.55 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 041894 57 DSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 57 ~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.|.++++.++.. ...++..++.++...|..+-|
T Consensus 34 ~a~~ll~~l~~~-~~~a~~~~~~vL~~~~~~~la 66 (69)
T cd08304 34 AANELLNILESQ-YNHTLQLLFALFEDLGLHNLA 66 (69)
T ss_pred HHHHHHHHHHHh-CcchHHHHHHHHHHcCCHhHH
Confidence 566777777655 556777777777777665544
No 421
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.80 E-value=2.1e+02 Score=18.88 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=22.1
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++++.+.++.-.++|.++.+.|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56777888888899999999998888
No 422
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=24.71 E-value=4.2e+02 Score=22.16 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC-------------ChhhHH--HHHHHHHhc
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA-------------PPVAWK--SIIRCCTQN 84 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~-------------~~~~~~--~li~~~~~~ 84 (219)
....+-....+.|+..+......|+..+. |+...+..-++.+. .++ +..++| -++++.. .
T Consensus 145 l~~~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail-~ 221 (334)
T COG1466 145 LPQWIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALL-K 221 (334)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHH-C
Confidence 33445566778889988888888888877 66666666555543 110 111222 2444444 5
Q ss_pred CChhHHHHHHHHhHhCCCCCC
Q 041894 85 GLLVESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~ 105 (219)
|+..+|..+++.+...|.+|-
T Consensus 222 g~~~~a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 222 GDVKKALRLLRDLLLEGEEPL 242 (334)
T ss_pred CCHHHHHHHHHHHHHcCCcHH
Confidence 899999999999988886664
No 423
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=24.56 E-value=2.2e+02 Score=18.84 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFN---LVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 82 (219)
+.++++.+.+.|+- +.....-+. ++.. +-++|..+++-++.. +..+|.++.+++-
T Consensus 18 ~~~l~d~L~q~~VL-t~~d~EeI~---~~~t~~~r~~ka~~LLdiL~~r-G~~Af~~F~~aL~ 75 (86)
T cd08785 18 PSRLTPYLRQCKVL-DEQDEEEVL---SSPRLPIRANRTGRLLDILATR-GKRGYVAFLESLE 75 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHh---CCCccccHHHHHHHHHHHHHhc-CcchHHHHHHHHH
Confidence 34477777777733 222223322 2333 348888888888877 7788888888883
No 424
>PRK11619 lytic murein transglycosylase; Provisional
Probab=24.49 E-value=5.8e+02 Score=23.79 Aligned_cols=125 Identities=8% Similarity=-0.084 Sum_probs=78.3
Q ss_pred CHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 54 LVHDSLCLLDTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 54 ~~~~A~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
..++...++++-+ .|.....=...+..+.+.+++.+...++. . -+.+..--.....+....|+.+.|......+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666666666665 23122333445556666777776555221 1 1334444466777777888887777666666
Q ss_pred HHhCCCccHHHHHHHHHHHHhcCCchhH-HHHHhhhhccCCcchhhHHHHhhcC
Q 041894 133 IRLGVDLDLYTNNALMNMYAQSQNMDMH-IYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 133 ~~~g~~~~~~~~~~ll~~y~~~g~~~~~-~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
-..| ......++.++..+.+.|.+... +|.++.... ..|+...|..+...+
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al-~~~~~~lA~~l~~~l 207 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAM-KAGNTGLVTYLAKQL 207 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHhc
Confidence 6666 34566899999999988877653 777766554 456666666666655
No 425
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.49 E-value=1.1e+02 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc-----------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL-----------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
++++|..+.+.+ |....|.-.+....+. +.+++-.++++.+.+.| .+| ....-|+.|-|.
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeeccccc
Confidence 566666665544 3333444444443322 45777778888887776 344 344458999999
Q ss_pred CCchh
Q 041894 155 QNMDM 159 (219)
Q Consensus 155 g~~~~ 159 (219)
++++.
T Consensus 100 n~y~~ 104 (480)
T TIGR01503 100 NRYDE 104 (480)
T ss_pred ccHHH
Confidence 99943
No 426
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.30 E-value=3.6e+02 Score=24.22 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
|+...|..++++....+ ....++..+...+ ... +...+..++.+....+....|+.++++|
T Consensus 214 Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l----------------g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l 274 (484)
T PRK14956 214 GSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI----------------GYH-GIEFLTSFIKSLIDPDNHSKSLEILESL 274 (484)
T ss_pred ChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q ss_pred HhCCCCC
Q 041894 98 IGSGVYP 104 (219)
Q Consensus 98 ~~~g~~p 104 (219)
.+.|..|
T Consensus 275 ~~~G~d~ 281 (484)
T PRK14956 275 YQEGQDI 281 (484)
T ss_pred HHcCCCH
No 427
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.09 E-value=92 Score=24.66 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 20 KSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
.+-...+..-.++.|++ -=+++|+++|+--.-.-++++..+++..+
T Consensus 188 l~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 188 LDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 44444555555555532 23345555555444444455555555443
No 428
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.00 E-value=5.7e+02 Score=23.46 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=66.4
Q ss_pred HhCccccCChhHHHHHHHHHHHcC----CCCcHHHHHHH-HHHHhhcCCHHHHHHHHHhcC----CCCC--hhhHHHHHH
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTL----EPNSRFLISRL-LFIYNNFNLVHDSLCLLDTLK----TPAP--PVAWKSIIR 79 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~----~~~~--~~~~~~li~ 79 (219)
+..+.+.+... |....+..++.- ..+=...+.-+ +..+...++...|.+.++.+. .++| +.++-+++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 44444444444 777777655432 22333344444 333333478888888887764 1213 345555555
Q ss_pred HHHhc--CChhHHHHHHHHhHhCC--C-------CCCcccHHHHHHHHh--cccChhhHHHHHHHH
Q 041894 80 CCTQN--GLLVESLTCFVRMIGSG--V-------YPDHNVFPSVLKSCT--LLVDFRFGESVHACI 132 (219)
Q Consensus 80 ~~~~~--g~~~~a~~~~~~m~~~g--~-------~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m 132 (219)
+.... +.++++.+..++..... + .|-..+|..+++.|+ ..|+.+.+.+.+.++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55543 55677777777663321 1 234567777777776 446655666655543
No 429
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=23.89 E-value=4.8e+02 Score=22.59 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 63 (219)
..|..+.-.|+...+......+++.. +.|...|..--.+|...|.+..|+.=+.
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34555666777777777777777654 4567777777778888887777765444
No 430
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.89 E-value=6.1e+02 Score=23.80 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLL-VESLTCFVR 96 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 96 (219)
+..+++..++.+....+ ......+.|++.|.+.|.. .|..++-..+.| -..-+-..|+.|...... -.++.+|..
T Consensus 19 ~~~~~~~~~~~~~~~~~--~~~~l~~~l~~y~~~t~s~-~~~~il~~~~~P-~~K~~~~~l~~~~~~~~~Rl~~L~Ll~~ 94 (668)
T PF04388_consen 19 SVLEEIKALLQELLNSD--REPWLVNGLVDYYLSTNSQ-RALEILVGVQEP-HDKHLFDKLNDYFVKPSYRLQALTLLGH 94 (668)
T ss_pred hhHHHHHHHHHHHhhcc--chHHHHHHHHHHHhhcCcH-HHHHHHHhcCCc-cHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 34556666666655443 3457789999999999965 556677778877 667777888888876554 678899999
Q ss_pred hHhCCC-----CCCcccHHHHHHHHhcccC
Q 041894 97 MIGSGV-----YPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 97 m~~~g~-----~p~~~t~~~ll~~~~~~g~ 121 (219)
++...- ..+..-|..|+++.-.-.+
T Consensus 95 ~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~ 124 (668)
T PF04388_consen 95 FVRSQPPWLYKILQTPLFKSLLKCLQFDTS 124 (668)
T ss_pred HHhcCCchHHHHhcChhHHHHHHHHhhccc
Confidence 887641 1234557777777754443
No 431
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=23.86 E-value=6.5e+02 Score=24.11 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=26.5
Q ss_pred cCCcchhhHHHHhhcCCC---CCCeeehhHHHHHHhhhh----HhHHHcCCCCCC
Q 041894 170 FNGGREASVHEVLDKIPE---RNGNVELSSGLAGCNKFE----KRVVSAGHDADL 217 (219)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~---~~~~~~~n~ll~~~~~~~----~~m~~~g~~pd~ 217 (219)
+.+|+++-++.+++.-.. +| ..-.+.+..|..... +...++|..++.
T Consensus 630 a~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~ 683 (823)
T PLN03192 630 AKRNDLTAMKELLKQGLNVDSED-HQGATALQVAMAEDHVDMVRLLIMNGADVDK 683 (823)
T ss_pred HHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence 345555888888875443 23 344555555533222 356677877664
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.74 E-value=4.8e+02 Score=22.54 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=23.7
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 75 KSIIRCCTQ---NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 75 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
-.+++++.+ .++++.|+..+..|.+.|..|....=-.++.++-..|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 334444444 2556666666666666665555444444444444443
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.62 E-value=1.9e+02 Score=17.73 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=6.3
Q ss_pred cCCHHHHHHHHHhc
Q 041894 52 FNLVHDSLCLLDTL 65 (219)
Q Consensus 52 ~g~~~~A~~~~~~m 65 (219)
.|++=+|.++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444455554444
No 434
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.41 E-value=2.1e+02 Score=24.85 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=64.9
Q ss_pred HHHHHHHcCCCCcHH---HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHH--H--HHHhcCChhHHHHHHHHhH
Q 041894 26 LHAQIFKTLEPNSRF---LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII--R--CCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 26 l~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li--~--~~~~~g~~~~a~~~~~~m~ 98 (219)
+...+.+.|+.|+.. +-.+++.++.-.+..++..+++.... . +...+...- . .+...+....-...+....
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l 178 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-I-DLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLL 178 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-h-hhhhhhhhccccccccccccccchHHHHHHHHH
Confidence 566777889888875 46778887777777777777776321 0 111000000 0 0000011111222233333
Q ss_pred hCCCCCCcccHHHHHHHHhcccChhhHHHHHHH----------------HHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC----------------IIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 99 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~----------------m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+.|.-.|...+.-.++.+...--+++|.+.-.. +...--.||..+|+++....+--|-+
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~ 253 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAAL 253 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcccc
Confidence 344444444444444443333333333311111 11222458999999999888887777
No 435
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=23.22 E-value=2.3e+02 Score=18.66 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCC
Q 041894 53 NLVHDSLCLLDTLKT-PAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 53 g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~ 86 (219)
|+.+.|..+++.+.. . ..--|..+++|+-..|.
T Consensus 48 g~~~aa~~Ll~~L~~~r-~~~wf~~Fl~AL~~~g~ 81 (88)
T cd08812 48 GNIAAAEELLDRLERCD-KPGWFQAFLDALRRTGN 81 (88)
T ss_pred ChHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHcCC
Confidence 444555555544442 2 23444445555544443
No 436
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.10 E-value=3.1e+02 Score=23.42 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCcccHHH--HHHHHhcccChhhHHHHHHHHHH-----hCCCccHH-
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPS--VLKSCTLLVDFRFGESVHACIIR-----LGVDLDLY- 142 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~- 142 (219)
.-.++...-+.++.++|+++++++... --+|+.+.|.. ....+-..|++..++..+....+ -++.|+++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344555555667999999999998743 34677776654 44555678999999999888776 57777433
Q ss_pred HHHHHH-HHHHhcCCc
Q 041894 143 TNNALM-NMYAQSQNM 157 (219)
Q Consensus 143 ~~~~ll-~~y~~~g~~ 157 (219)
.|..+- ..|-+-|++
T Consensus 158 ~fY~lssqYyk~~~d~ 173 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDF 173 (380)
T ss_pred hHHHHHHHHHHHHHhH
Confidence 344443 333344444
No 437
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.08 E-value=1.6e+02 Score=24.13 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-----CCCCcccHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-----VYPDHNVFPSVL 113 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll 113 (219)
..-...|......|++.+|.++..+...-. ...-|+++ +.. ..++++-....+++.+.. ...|...|..++
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~-~~L--~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV-RHL--SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH-HHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334556667778899999999887665210 10111111 111 123455555555544331 267888999999
Q ss_pred HHHhcccChhhHH
Q 041894 114 KSCTLLVDFRFGE 126 (219)
Q Consensus 114 ~~~~~~g~~~~a~ 126 (219)
.||.-.|+.+.+.
T Consensus 205 ~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 205 EAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHhhhHHHH
Confidence 9999888765544
No 438
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.06 E-value=2e+02 Score=17.98 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g 85 (219)
++...-...+...++.++.+-...+.+.+..+ |..+-...+.++.+.|
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLKDE-DPMVRRAAARALGRIG 59 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 34444444555555555444444444444444 5555555555555554
No 439
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.91 E-value=5.6e+02 Score=23.04 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=46.7
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------------CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 30 IFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----------------TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 30 m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----------------~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
+.+.|+..+......++... .|++..|...++.+. .+ .....-.+++++. .++.++|+.+
T Consensus 188 ~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~-~~~~if~Li~al~-~~d~~~Al~~ 263 (504)
T PRK14963 188 LEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLP-PQERLRGIAAALA-QGDAAEALSG 263 (504)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC-cHHHHHHHHHHHH-cCCHHHHHHH
Confidence 34567766666555555433 477777777666542 11 2233444666664 4899999999
Q ss_pred HHHhHhCCCCCC
Q 041894 94 FVRMIGSGVYPD 105 (219)
Q Consensus 94 ~~~m~~~g~~p~ 105 (219)
++++...|..|.
T Consensus 264 l~~Ll~~G~~~~ 275 (504)
T PRK14963 264 AAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHcCCCHH
Confidence 999999986665
No 440
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=22.90 E-value=2.1e+02 Score=18.11 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
....+++.+.+.|+- +..-+..+.. .....+.+..+++.++.+ +..+|..++.++.+ +++.-|.
T Consensus 17 ~~~~ild~L~~~~vl-t~~e~e~I~~---~~t~~~k~~~LLd~l~~k-g~~a~~~F~~~L~~-~~~~La~ 80 (85)
T PF00619_consen 17 DLDDILDHLLSRGVL-TEEEYEEIRS---EPTRQDKARKLLDILKRK-GPEAFDIFCQALRE-NQPHLAD 80 (85)
T ss_dssp HHHHHHHHHHHTTSS-SHHHHHHHHT---SSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCC-CHHHHHHHHc---cCChHHHHHHHHHHHHHH-CHHHHHHHHHHHHh-hCHHHHH
Confidence 456677888887744 3333444433 455677888888888877 88888888888877 4444443
No 441
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.84 E-value=4.8e+02 Score=22.21 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
||......++++.+...........+..+...
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQS 259 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcC
Confidence 66666777777776655555444444444433
No 442
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.69 E-value=4.3e+02 Score=21.66 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.5
Q ss_pred cCCcchhhHHHHhh
Q 041894 170 FNGGREASVHEVLD 183 (219)
Q Consensus 170 ~~~g~~~~a~~l~~ 183 (219)
+..||+|++.++..
T Consensus 238 yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 YDEGDIEEIKKVLS 251 (308)
T ss_pred hccCCHHHHHHHHc
Confidence 35666688877764
No 443
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=22.56 E-value=2.4e+02 Score=18.60 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g 85 (219)
+.++++.+.+.|+- +....-. ..+...+.+.|..+++-++ . +..+|.++++++-..+
T Consensus 18 ~~~l~d~L~s~~IL-t~~d~Ee---I~~~~t~~~qa~~LLdiL~-r-Gp~Af~~F~esL~~~~ 74 (84)
T cd08810 18 ADRHFDYLRSKRIL-TRDDCEE---ISCRTTSRKQAGKLLDILA-E-NPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHHHcCCC-CHHHHHH---HhccCCcHHHHHHHHHHHh-h-CchHHHHHHHHHHHcc
Confidence 34578888888743 2222222 2336677888989999888 7 8899999998887765
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.49 E-value=6.1e+02 Score=23.26 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
..+....+.--|+.+-.-+.-+.-..|..-..+++.-+++.-.....+.+..+|...| -+...|-.++++|...|.-+
T Consensus 39 ~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n~~ 116 (711)
T COG1747 39 EHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGNEQ 116 (711)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCchh
Q ss_pred hH-HHHHhhhhccC-------------CcchhhHHHHhhc
Q 041894 159 MH-IYDRFQGFGFN-------------GGREASVHEVLDK 184 (219)
Q Consensus 159 ~~-~~~~~~~~~~~-------------~g~~~~a~~l~~~ 184 (219)
-. +|++|.+++++ .++.+++-.+|.+
T Consensus 117 l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~K 156 (711)
T COG1747 117 LYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHH
No 445
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=22.49 E-value=1.4e+02 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
.+|+.+|.++-+.| ++-=.+++.+|--. |+.+|+.+++
T Consensus 74 lsYS~fi~gLkkA~-I~inRKvLadlAi~-d~~aF~~lv~ 111 (118)
T COG0292 74 LSYSRFINGLKKAG-IEIDRKVLADLAIN-DPAAFAALVE 111 (118)
T ss_pred CcHHHHHHHHHHcC-chhhHHHHHHHHhc-CHHHHHHHHH
Confidence 34555555544444 33333444444444 4444444443
No 446
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=22.44 E-value=1.2e+02 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPS 111 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ 111 (219)
--.+++.|.++|.+++|+++....++-. --|+......
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~ 147 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKS 147 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHH
Confidence 3467888888888888888887755432 2366444433
No 447
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=5.1e+02 Score=22.35 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHH--hcccChhhHH
Q 041894 53 NLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSC--TLLVDFRFGE 126 (219)
Q Consensus 53 g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~--~~~g~~~~a~ 126 (219)
|.+.+|-..|+++- .|.|..+++-.=.+|.-.|+.......++...-. .+||. ++|..=|-++ ...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44445444555443 2327778888888888888888877777775432 24444 2333323333 3567788887
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 127 ~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
..-+.-.+.+ +.|.-.-.++-+.+-..|++++.
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhH
Confidence 7755544333 24555556666666677777433
No 448
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=22.09 E-value=3.3e+02 Score=20.83 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=9.5
Q ss_pred hhcCCHHHHHHHHHhcC
Q 041894 50 NNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~ 66 (219)
.+.++.+.|..+++.++
T Consensus 139 i~~~~~~~a~~~l~~l~ 155 (220)
T TIGR01716 139 IEKNEFSYAQYFLEKLE 155 (220)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34456666666665554
No 449
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.85 E-value=2.6e+02 Score=18.78 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.+..++.+..-... ..-..|+..|+.++.+.|.-..|+.+-+.+..+|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 45555555443322 1235678888888888888888888877777666
No 450
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=21.85 E-value=57 Score=19.67 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
|-..+...+|+.|..+..-|....|+-.|+-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 445566677777777666666666666665554
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.81 E-value=5.2e+02 Score=22.20 Aligned_cols=108 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhh--cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRF--LISRLLFIYNN--FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~--~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+++..|.++++.+.++ ++++.. .+..+..+|.. .-++++|.+.|+..... +.. +..-.-..+...+..
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~----l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKA----LNQEREGLKELVEVL 216 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhh----hHhHHHHHHHHHHHH
Q ss_pred HHHHHhHhCCCCCCcc----cHHHHHHHHhcc------cChhhHHHHH
Q 041894 92 TCFVRMIGSGVYPDHN----VFPSVLKSCTLL------VDFRFGESVH 129 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~----t~~~ll~~~~~~------g~~~~a~~~~ 129 (219)
+-+............. ++..+.+-+..+ |++++|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarl 264 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARL 264 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.79 E-value=3.9e+02 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=8.3
Q ss_pred HHhcCChhHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRM 97 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m 97 (219)
|.++|.+++|.++++..
T Consensus 121 Cm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 121 CMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHhcCchHHHHHHHHHH
Confidence 44445555555555443
No 453
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.71 E-value=3.4e+02 Score=20.10 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
.|+...|...+.+|.-..+.+.|+-+|..++
T Consensus 36 ~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP 66 (197)
T KOG4414|consen 36 THDDWPYAIHLAGYFLHDDCDNARFLWKRIP 66 (197)
T ss_pred CCCcchHHHHHHHHHHhccchhHHHHHHhCC
Confidence 4778899999999999999999999999986
No 454
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.50 E-value=2.8e+02 Score=24.54 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+|..+.+..+.||.+.+--+...|.+.--++-|-++|+-..
T Consensus 461 L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~ 501 (586)
T KOG2223|consen 461 LFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYC 501 (586)
T ss_pred HHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheee
Confidence 44444555566666666666666666666666666666554
No 455
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.31 E-value=4.9e+02 Score=26.21 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=94.7
Q ss_pred CccccCChhHHHHHHHHHHH-----cCCCCcHH--HHHHHHHHHhhcC--CHHHHHHHHHhcC---------CCCChhhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFK-----TLEPNSRF--LISRLLFIYNNFN--LVHDSLCLLDTLK---------TPAPPVAW 74 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~-----~g~~~~~~--~~~~ll~~~~~~g--~~~~A~~~~~~m~---------~~~~~~~~ 74 (219)
|-....|.++-.-++..+.+ +.+.-|.+ -|...|....++| -++++..+.++=. .| |...+
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~-~~e~~ 938 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKP-DSEKQ 938 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheecc-CHHHH
Confidence 33445667776666666652 12333333 3666777777777 5666666654322 35 55554
Q ss_pred HHHH----HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--HHHHH
Q 041894 75 KSII----RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--NNALM 148 (219)
Q Consensus 75 ~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll 148 (219)
.-+. +.+.....+++|--.|+.--+ -.-.+.+|-.+|+++++..+..++.. .-|... -..|+
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHH
Confidence 4444 444555777777766643211 12457888888999999988887622 122222 24556
Q ss_pred HHHHhcCCchhH--H-------HHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 149 NMYAQSQNMDMH--I-------YDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 149 ~~y~~~g~~~~~--~-------~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
.-+...|++-+| + .+.....+|+...+++|.++-..-...+
T Consensus 1007 s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 666666666444 1 1223344567777788888877655443
No 456
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.89 E-value=5.9e+02 Score=22.55 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC--CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
.+.--||+.+.-.|+++...+..+.|.+. |-.| -.+||- +=-+|.-.+++.+|.++|....
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~-VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQ-VGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 34445777777788888888888888765 3344 345643 3344555667777777766544
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.64 E-value=4.6e+02 Score=22.19 Aligned_cols=57 Identities=5% Similarity=-0.039 Sum_probs=35.4
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
.++|+.|...++.|..+.|-=+.--+++.=.+.+..++|+.+... ..-+..|+..+|
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 457777777778888777655555555555777777777776432 222555555444
No 458
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=20.64 E-value=70 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred hhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHH
Q 041894 166 QGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201 (219)
Q Consensus 166 ~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~ 201 (219)
..+.|+.|. -.+.++.+.+.++. .+.|+++..-.
T Consensus 9 M~~lW~~~~-~t~~eI~~~l~~~~-~~~~sTv~t~L 42 (115)
T PF03965_consen 9 MEILWESGE-ATVREIHEALPEER-SWAYSTVQTLL 42 (115)
T ss_dssp HHHHHHHSS-EEHHHHHHHHCTTS-S--HHHHHHHH
T ss_pred HHHHHhCCC-CCHHHHHHHHHhcc-ccchhHHHHHH
Confidence 344455555 66788888888775 67777776666
No 459
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.47 E-value=1.9e+02 Score=16.55 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=21.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS 38 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~ 38 (219)
..|..-+|+.- ..=..+...++.+.+.+.|+.||
T Consensus 13 ~~TVSr~ln~~-~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 13 KSTVSRVLNGP-PRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHTTC-SSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCC
Confidence 34555666655 23345566778888888888886
No 460
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=20.27 E-value=4.9e+02 Score=21.38 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 105 (219)
.|. ++++... |+..+|.++++.+...|..|-
T Consensus 203 if~-l~dai~~-~~~~~A~~~l~~L~~~g~~p~ 233 (326)
T PRK07452 203 SLQ-LADALLQ-GNTGKALALLDDLLDANEPAL 233 (326)
T ss_pred HHH-HHHHHHC-CCHHHHHHHHHHHHHCCCcHH
Confidence 343 5555553 667777777777776665554
No 461
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=20.16 E-value=4.5e+02 Score=24.07 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
+.+...|-.+|.-|...+.+++|.++=+..++. ..|.++--.-.++.+..-++..|..
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~eq---TMWAtlAa~Av~~~~m~~~EiAYaA 627 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQEQ---TMWATLAAVAVRKHQMQISEIAYAA 627 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhccch---HHHHHHHHHHHhhccccHHHHHHHH
Confidence 345556888888889999999998887766544 6666666555555555444444433
No 462
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=20.00 E-value=2.6e+02 Score=21.57 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+.+.....++..|...|+.+..+++.-.+.. ...-.+.+++-|.+.|-++.-.-++......-+.|=...+..+-+.
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~--~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~~i~~~ 96 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLDP--SSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLELIRSA 96 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCH--HhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHHHHHHh
Confidence 4557889999999999999999999988842 2222466777788887777666666665555566655555444433
Done!